Citrus Sinensis ID: 025534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEccccccEEEEEEccccccEEEEcccEEEEcccccHHHHHcccHHccccccccEEEEEccccHHHHHHHHccccccEEEEEEccHHHHHHHHHccHHHccccccccEEEEEcHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEccEEEEEEEccccEEEEEEEcccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccEEEEEEccHHHHHHHHHHcHHHHcccccccEEEEEccHHHHHccccccEEEEEEccccHHHHccHHHHHcHHHHHHHHHHHcccccEEEEccccccHHHcHHHHHHHHHHHHHHcccEEEEEEc
Coil and Loop (DISEMBL)
mgeiscsngisqangadaknvaltgyrkscwyEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDgklqsaevdefiyheslvhpallhhpnpktifimgggegsTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprleLVINDARAELESRKESYDVIigdladpieggpcyklytKSFYEFvvkprlnpegifvtqagpagifshTEVFSCIYNTLRQVFKCGYNLTLL
Flexible Loop (DISEMBL)
mgeiscsngisqangadaknvaLTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprlelVINDARAelesrkesydvIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Low Complexity Region (SEG)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Disordered region (IsUnstruct)
******************KNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT**
Disordered Region (DISOPRED)
***************************KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Disordered Region (DISEMBL)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Disordered Region (DISPRO)
*GEISCSNGISQA*******VALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9S7X6	339	Thermospermine synthase A	yes	no	0.960	0.710	0.669	8e-99
Q9YE02	314	Probable spermidine synth	yes	no	0.884	0.707	0.441	1e-48
Q5SK28	314	Spermidine synthase OS=Th	yes	no	0.780	0.624	0.49	2e-48
Q72K55	314	Spermidine synthase OS=Th	yes	no	0.780	0.624	0.49	2e-48
Q975S5	300	Probable spermidine synth	yes	no	0.772	0.646	0.47	4e-44
Q2JQS1	312	Spermidine synthase OS=Sy	yes	no	0.776	0.625	0.437	1e-43
Q2JQ57	312	Spermidine synthase OS=Sy	yes	no	0.864	0.695	0.404	2e-43
Q9HV34	349	Spermidine synthase 2 OS=	yes	no	0.788	0.567	0.425	2e-42
B0K172	277	Spermidine synthase OS=Th	yes	no	0.840	0.761	0.413	4e-42
B0K9I5	277	Spermidine synthase OS=Th	yes	no	0.840	0.761	0.413	4e-42

>sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1

 Score =  359 bits (922), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 162/242 (66%), Positives = 202/242 (83%), Gaps = 1/242 (0%)

Query: 3   EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
           E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct: 6   EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query: 62  LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
           LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct: 66  LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query: 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
           +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct: 126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query: 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
           DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct: 186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query: 242 FK 243
           FK
Sbjct: 246 FK 247

Required for correct xylem specification through regulation of the lifetime of the xylem elements. Prevents premature death of the xylem vessel elements.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 9

>sp|Q9YE02|SPEE_AERPE Probable spermidine synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=speE PE=3 SV=2

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 151/231 (65%), Gaps = 9/231 (3%)

Query: 15  GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVI 74
           G   K+V L    K  W+ E +  +      +  ++  G +R+Q+IA++     GK LV+
Sbjct: 3   GGSEKSVFL----KWSWFLEWLTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVL 58

Query: 75  DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134
           DGK QS+E DEF+YHE+LVHPA++ H +P+ + I+GGGEG+T RE+L+H++VEK VM DI
Sbjct: 59  DGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDI 118

Query: 135 DEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKES-YDVIIGDLADPIEGGPC 192
           DE VV   + +L   ++ AF DPR E+VI+DA   + S+ E+ +DV+I DL DP+E GP 
Sbjct: 119 DETVVNVAREHLREWHRGAFDDPRAEVVIDDAWNYVASKAETGFDVVIADLVDPLEAGPA 178

Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +LY++ +Y  +VK  +NP G+FVTQA    I   TE  + I NT+ +VFK
Sbjct: 179 TRLYSEEYYR-MVKDVMNPGGVFVTQA--VSISHLTEYHAIIRNTVARVFK 226

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q5SK28|SPEE_THET8 Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Has broad substrate specificity. Is also active with agmatine and norspermidine. Has lower activity with homospermidine, mitsubishine and thermine.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q72K55|SPEE_THET2 Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q975S5|SPEE_SULTO Probable spermidine synthase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=speE PE=3 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 129/200 (64%), Gaps = 6/200 (3%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104
           A+  ++   +T YQ   L++   FGKAL++DGK+QS   DEFIYHE+LVHP LL   NP+
Sbjct: 20  AITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPE 79

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
            I I+GGGEG+T RE+L+HKT++ V M DID  V++F K YL   ++ AF +P+ +LVI 
Sbjct: 80  KILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQEWHQGAFDNPKSKLVIE 139

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           D    ++  KE +D ++ DL DPI+  P   LYTK FYE V   R++  GI      P+ 
Sbjct: 140 DGYKFIKETKEKFDAVVIDLTDPIKDSPSQMLYTKEFYEEV--KRISKWGIVTQATSPS- 196

Query: 224 IFSHTEVFSCIYNTLRQVFK 243
            FS  E FS IYNT++ VFK
Sbjct: 197 -FS-LETFSIIYNTIKHVFK 214

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQS1|SPEE_SYNJA Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 135/208 (64%), Gaps = 13/208 (6%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN-- 102
           A+  IL   +TR+Q++ + +T  +GK L++DG  QS   DEF+YHE+LVHPAL+      
Sbjct: 23  AITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAG 82

Query: 103 --PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
             P+ + I+GG EG+T RE+LR ++VE+VVM DID EVVE C+ +L  +++ +F+DPR E
Sbjct: 83  GIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADPRAE 142

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           +VI DA   L   +  +D I+ DL+DP+E GP Y+L+T+ F+   V+ +L   G FV QA
Sbjct: 143 VVIADALDFLGQTEPIWDAILSDLSDPVEAGPAYRLFTQEFFR-QVRSKLQTAGAFVIQA 201

Query: 220 GPAG---IFSHTEVFSCIYNTLRQVFKC 244
           GP G   ++ HT     I +TL+ VF  
Sbjct: 202 GPTGPVELWQHTR----IVHTLKTVFAA 225

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQ57|SPEE_SYNJB Spermidine synthase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=speE PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 13/230 (5%)

Query: 23  LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
           ++  R   W +E        + A+  IL   +T +Q++ + +T  FGK L++DG  QS  
Sbjct: 1   MSSPRSFFWVQEYFTPWDYTARAVTRILAYRKTPFQEMLIAETGAFGKGLMLDGHWQSTT 60

Query: 83  VDEFIYHESLVHPALLHHPN----PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138
           VDEF+YHE+LVHPA++        P+ + ++GG EG+T RE+LR ++VE+VVM DID EV
Sbjct: 61  VDEFLYHEALVHPAMVQVVQAGGIPRRVLVLGGAEGATLREVLRWRSVEQVVMVDIDGEV 120

Query: 139 VEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197
           V  C+ +L  +++ +F DPR+E+VI DA   L+     +DVI+ DL+DPIE GP Y+L+T
Sbjct: 121 VAACREHLPEMHQGSFEDPRVEVVIADALDFLQETGPIWDVILSDLSDPIESGPAYRLFT 180

Query: 198 KSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKC 244
           + F+   ++ +L P+G F  QAGP G   +  HT     I  TL+ VF  
Sbjct: 181 QEFFR-QIRSKLQPDGAFTIQAGPTGPVELHQHTR----IVRTLKTVFAA 225

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9HV34|SPEE2_PSEAE Spermidine synthase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=speE2 PE=3 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 131/207 (63%), Gaps = 9/207 (4%)

Query: 41  RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH 100
           ++ + L  +L+ G TR+Q++ + DT  + + L++DG +QSAE DE +YHE LV PA+L H
Sbjct: 43  QYVYRLRRVLYQGRTRWQNVLIADTYNYDRVLMLDGAIQSAESDESLYHELLVQPAMLAH 102

Query: 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
             P+ + I+GGGEG+T RE+L H +V + VM D+D E+VE C+ +L   ++ AF DPR E
Sbjct: 103 DEPRDVLIIGGGEGATLREVLSHASVRRAVMVDLDRELVELCREHLFQWHQGAFDDPRCE 162

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           L+  D RA LE     YDV+I D+ D ++ GP   LYT+ FYE ++  RL P G+   Q 
Sbjct: 163 LLAEDGRAYLERDPSLYDVVIIDVVDMLDNGPAQALYTRQFYE-LLHSRLRPGGVVAVQ- 220

Query: 220 GPAGI-FSHTE--VFSCIYNTLRQVFK 243
              G+ FSH++    + +  TLR VF 
Sbjct: 221 ---GLEFSHSDDKPHAALARTLRSVFS 244

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|B0K172|SPEE_THEPX Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 9/220 (4%)

Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            W+ E  +ENLR+S  +   L   +T YQ +A+LDT  FG+ L +DG LQ+ E DEF+YH
Sbjct: 3   LWFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYH 62

Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E +VH  L  H NPK++ I+GGG+G + RE+L+H +VE+VV+ +IDE VV   K YL   
Sbjct: 63  EMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTI 122

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
            +A  DPR+E++I D    +   K  +DV+I D  DPI  GP   L+T  FY+ V +  L
Sbjct: 123 SQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CL 179

Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT 249
             +GI V Q     I+        + N L ++FK  Y +T
Sbjct: 180 KEDGIIVAQTESPFIYGK------LINKLSKMFKEIYPIT 213

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|B0K9I5|SPEE_THEP3 Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 9/220 (4%)

Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            W+ E  +ENLR+S  +   L   +T YQ +A+LDT  FG+ L +DG LQ+ E DEF+YH
Sbjct: 3   LWFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYH 62

Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E +VH  L  H NPK++ I+GGG+G + RE+L+H +VE+VV+ +IDE VV   K YL   
Sbjct: 63  EMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTI 122

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
            +A  DPR+E++I D    +   K  +DV+I D  DPI  GP   L+T  FY+ V +  L
Sbjct: 123 SQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CL 179

Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT 249
             +GI V Q     I+        + N L ++FK  Y +T
Sbjct: 180 KEDGIIVAQTESPFIYGK------LINKLSKMFKEIYPIT 213

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
444436449	334	SPDSY-like protein [Eucalyptus cladocaly	0.968	0.727	0.860	1e-123
225432624	329	PREDICTED: thermospermine synthase ACAUL	0.952	0.726	0.872	1e-122
449433323	338	PREDICTED: thermospermine synthase ACAUL	0.968	0.718	0.835	1e-120
255551457	336	spermine synthase, putative [Ricinus com	0.968	0.723	0.853	1e-119
356536017	334	PREDICTED: thermospermine synthase ACAUL	0.968	0.727	0.832	1e-118
255648363	334	unknown [Glycine max]	0.968	0.727	0.828	1e-117
359807232	334	uncharacterized protein LOC100801533 [Gl	0.968	0.727	0.824	1e-117
224102051	338	predicted protein [Populus trichocarpa]	0.968	0.718	0.852	1e-115
118484280	338	unknown [Populus trichocarpa]	0.968	0.718	0.852	1e-115
388492066	335	unknown [Lotus japonicus]	0.968	0.725	0.800	1e-115

>gi|444436449|gb|AGE09592.1| SPDSY-like protein [Eucalyptus cladocalyx]

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/243 (86%), Positives = 226/243 (93%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+IS SNGIS  NG + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG +++QDI
Sbjct: 1   MGDISVSNGISNGNGVNGKSHSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASQFQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALL+HPNPKT+FIMGGGEGSTAREI
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLYHPNPKTLFIMGGGEGSTAREI 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHK VEKV MCDIDEEVV+FC+SYLVVN+EAF DPRLEL+INDARAELESRKE +DVII
Sbjct: 121 LRHKAVEKVSMCDIDEEVVDFCRSYLVVNREAFCDPRLELIINDARAELESRKECFDVII 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLTHNGIFVTQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFK 243
           VFK
Sbjct: 241 VFK 243

Source: Eucalyptus cladocalyx

Species: Eucalyptus cladocalyx

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432624|ref|XP_002281882.1| PREDICTED: thermospermine synthase ACAULIS5 [Vitis vinifera] gi|297737031|emb|CBI26232.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/243 (87%), Positives = 227/243 (93%), Gaps = 4/243 (1%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+ISCSNG    N  + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG T+YQDI
Sbjct: 1   MGDISCSNG----NEVNGKSHSLAGYRKSCWYEEEIEENLRWCFALNSILHTGATQYQDI 56

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALLHHPNPK+IFIMGGGEGSTAREI
Sbjct: 57  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNPKSIFIMGGGEGSTAREI 116

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYLVVN+EAF DPRLELVINDARAELESR+E +DVII
Sbjct: 117 LRHKTVEKVVMCDIDEEVVDFCKSYLVVNREAFCDPRLELVINDARAELESREECFDVII 176

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCY+LYTKSFYE  VKPRL+P GIFVTQAGPAG+FSHTEVFSCI+NTLRQ
Sbjct: 177 GDLADPIEGGPCYQLYTKSFYESTVKPRLSPGGIFVTQAGPAGVFSHTEVFSCIHNTLRQ 236

Query: 241 VFK 243
           VFK
Sbjct: 237 VFK 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433323|ref|XP_004134447.1| PREDICTED: thermospermine synthase ACAULIS5-like [Cucumis sativus]

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/243 (83%), Positives = 222/243 (91%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           M ++S +N ++  N    K  +L GYRKSCWYEEEIEENLRWSFALNSILHTG ++YQDI
Sbjct: 1   MADVSSANLVNNGNELIEKGHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLHHPNPK+IFIMGGGEGSTARE+
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTAREL 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYL+VNKEAF DPRLEL+INDARAELE+R E YDVI+
Sbjct: 121 LRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIV 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL  +GIF+TQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFK 243
           VFK
Sbjct: 241 VFK 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551457|ref|XP_002516774.1| spermine synthase, putative [Ricinus communis] gi|223543862|gb|EEF45388.1| spermine synthase, putative [Ricinus communis]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/245 (85%), Positives = 223/245 (91%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQA-NGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MG+I+CSNGIS   NG + K + +  GYRKSCWYEEEIEENLRW FALNSILHTG ++YQ
Sbjct: 1   MGDIACSNGISNGTNGVNGKGHPSPNGYRKSCWYEEEIEENLRWCFALNSILHTGVSQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAEVDEFIYHE LVHPA+LHH N KTIFIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHECLVHPAILHHSNSKTIFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           EILRH+TVEKVVMCDIDEEVV+FCK+YL VN+EAF DPRLE++INDAR ELESRKE YDV
Sbjct: 121 EILRHRTVEKVVMCDIDEEVVDFCKAYLAVNREAFCDPRLEIIINDARNELESRKECYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPIEGGPCYKLYTKSFYE  VKPRLN  GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIEGGPCYKLYTKSFYELTVKPRLNQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536017|ref|XP_003536537.1| PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/245 (83%), Positives = 221/245 (90%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648363|gb|ACU24632.1| unknown [Glycine max]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 220/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIG LADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGGLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807232|ref|NP_001241620.1| uncharacterized protein LOC100801533 [Glycine max] gi|255644595|gb|ACU22800.1| unknown [Glycine max]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/245 (82%), Positives = 220/245 (89%), Gaps = 2/245 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT++KVVMCDIDEEVV FCKSY VVNKEAF D RLE+VINDAR ELE+R ESYDV
Sbjct: 121 ELLRHKTIDKVVMCDIDEEVVNFCKSYFVVNKEAFRDTRLEVVINDARVELEARDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFK 243
           RQVFK
Sbjct: 241 RQVFK 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102051|ref|XP_002312526.1| predicted protein [Populus trichocarpa] gi|222852346|gb|EEE89893.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 222/244 (90%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484280|gb|ABK94019.1| unknown [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 222/244 (90%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492066|gb|AFK34099.1| unknown [Lotus japonicus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/246 (80%), Positives = 220/246 (89%), Gaps = 3/246 (1%)

Query: 1   MGEISCSNGISQA---NGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRY 57
           MGE++ S+GIS     NG + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++Y
Sbjct: 1   MGEVAFSSGISNGSVNNGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQY 60

Query: 58  QDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117
           QDIALLDTKPFGKALVI GKLQSAE DEFIYHE LVHPALLHHPNPK +FIMGGGEGSTA
Sbjct: 61  QDIALLDTKPFGKALVIVGKLQSAETDEFIYHECLVHPALLHHPNPKNVFIMGGGEGSTA 120

Query: 118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177
           RE+LRHKT++KV+MCDIDEE V FCKSYLVVNKEAF D RLE++INDAR ELE+R+E+YD
Sbjct: 121 RELLRHKTIDKVLMCDIDEEAVNFCKSYLVVNKEAFCDLRLEVIINDARGELEAREENYD 180

Query: 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237
           VI+GDLADPI+GGPCYKLYTKSFYEF VKP+L   GIFVTQAGPAGIFSH EVFSCIYNT
Sbjct: 181 VIVGDLADPIDGGPCYKLYTKSFYEFTVKPKLKQGGIFVTQAGPAGIFSHKEVFSCIYNT 240

Query: 238 LRQVFK 243
           LRQVFK
Sbjct: 241 LRQVFK 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2180816	339	ACL5 "ACAULIS 5" [Arabidopsis	0.960	0.710	0.669	1.2e-90
TIGR_CMR|CHY_1240	273	CHY_1240 "spermidine synthase"	0.824	0.758	0.386	5.3e-40
UNIPROTKB|P09158	288	speE "SpeE" [Escherichia coli	0.752	0.656	0.417	6.3e-37
TIGR_CMR|BA_5619	275	BA_5619 "spermidine synthase"	0.824	0.752	0.334	1.9e-35
TIGR_CMR|CHY_1621	277	CHY_1621 "spermidine synthase"	0.737	0.667	0.386	4e-35
CGD|CAL0006284	297	SPE3 [Candida albicans (taxid:	0.864	0.730	0.352	6.5e-35
POMBASE|SPBC12C2.07c	298	SPBC12C2.07c "spermidine synth	0.836	0.704	0.336	2.2e-34
ASPGD|ASPL0000062169	292	spdA [Emericella nidulans (tax	0.752	0.647	0.365	7.4e-34
DICTYBASE|DDB_G0268630	284	spsA "Spermidine synthase" [Di	0.737	0.651	0.373	2e-33
WB|WBGene00012909	366	spds-1 [Caenorhabditis elegans	0.780	0.535	0.363	2.5e-33

TAIR|locus:2180816 ACL5 "ACAULIS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 162/242 (66%), Positives = 202/242 (83%)

Query:     3 EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
             E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct:     6 EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query:    62 LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
             LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct:    66 LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query:   122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
             +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct:   126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query:   182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
             DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct:   186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query:   242 FK 243
             FK
Sbjct:   246 FK 247

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016768 "spermine synthase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010487 "thermospermine synthase activity" evidence=IDA

GO:0048759 "vessel member cell differentiation" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009826 "unidimensional cell growth" evidence=IGI

TIGR_CMR|CHY_1240 CHY_1240 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/212 (38%), Positives = 134/212 (63%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             WY E+  EN +  + ++ IL+  +T YQ++A+++   FG++L++D  +Q+ E DE++YHE
Sbjct:     2 WYIEKHNENYQVGWRVSDILYQKKTPYQNLAIVEFAEFGRSLILDDAVQTTEKDEYVYHE 61

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              LVHPA   H +P+   I+GGG+G T RE+L+HKT+EKV + +IDEEV++  K +L    
Sbjct:    62 MLVHPAAFTHKSPRRALIIGGGDGGTLREVLKHKTIEKVDLVEIDEEVIKASKQFLPSLS 121

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             E+F+DPR+E++I+D    ++  K  YD+I  D +DP+  GP   LY++ FY  +    L 
Sbjct:   122 ESFNDPRVEVIIDDGIRYVKKVKNYYDLIFVDASDPV--GPAVVLYSEEFYRSLFDA-LT 178

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              +GI   Q+     +   ++F  I  TLR +F
Sbjct:   179 ADGIAAVQSESPNFYP--DIFVKIVTTLRDIF 208

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

UNIPROTKB|P09158 speE "SpeE" [Escherichia coli K-12 (taxid:83333)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/194 (41%), Positives = 119/194 (61%)

Query:    28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
             K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct:     4 KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 62

Query:    88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
             YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct:    63 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 122

Query:   148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
               N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct:   123 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEGC-K 179

Query:   207 PRLNPEGIFVTQAG 220
               LNP GIFV Q G
Sbjct:   180 RCLNPGGIFVAQNG 193

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;IMP;IDA

TIGR_CMR|BA_5619 BA_5619 "spermidine synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 71/212 (33%), Positives = 125/212 (58%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+  ++   +  +N  LHT +T +Q + +++T+ FG  L++DG + + E DEF+YHE
Sbjct:     4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              + H  L  HPNP+ + ++GGG+G   RE+L+H +V+K  + +ID +V+E+ K YL    
Sbjct:    64 MVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIA 123

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
              A  + R+E+ + D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct:   124 GALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISKA-LK 180

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              +GIFV Q      F+  E+ + ++  ++++F
Sbjct:   181 EDGIFVAQTDNPW-FT-PELITTVFKDVKEIF 210

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1621 CHY_1621 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 73/189 (38%), Positives = 118/189 (62%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+   N+  +  +   LHT  T +Q++A+++T  FG+ LV+DG +Q+  VDEF+YHE
Sbjct:     4 WFTEKQTPNVGITCKITRTLHTETTPFQELAVIETLQFGRMLVLDGMVQTTVVDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
              + H AL  HPNP+ + ++GGG+G T REI++H  V+K V+ +IDE V+E  K YL  + 
Sbjct:    64 MIAHVALNTHPNPEKVMVIGGGDGGTIREIVKHPKVKKAVLVEIDERVIEVSKQYLPEIA 123

Query:   150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                  +P++E+ + D    ++  K  YDVII D  +P+  GP  +L+++ FY+ V +  L
Sbjct:   124 VALMGNPKVEVRVEDGIKHVKEHKGEYDVIIIDSTEPV--GPAVELFSEDFYKNVYES-L 180

Query:   210 NPEGIFVTQ 218
               +GI V Q
Sbjct:   181 KDDGIMVAQ 189

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

CGD|CAL0006284 SPE3 [Candida albicans (taxid:5476)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 81/230 (35%), Positives = 129/230 (56%)

Query:    28 KSCWYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
             K  W+ E I + + W     S  +  +LH  +++YQD+ +  +  +G  LV+D  +Q  E
Sbjct:    11 KDGWFAE-ISDTM-WPGQAMSLKVEKVLHVEKSKYQDVLVFKSTTYGNVLVLDNCIQVTE 68

Query:    83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
              DEF Y E + H AL  HPNPK   ++GGG+G   REIL+H+++E+  +CDIDE V+E  
Sbjct:    69 RDEFSYQEMITHLALNSHPNPKKALVIGGGDGGVLREILKHESIEEAWLCDIDETVIEVS 128

Query:   143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202
             K YL    +++ DPR  + I D    LE  K  +DVII D +DP EG P   L+ K +++
Sbjct:   129 KKYLPNMAKSYDDPRTRVHIGDGFKFLEEYKNQFDVIITDSSDP-EG-PAESLFQKPYFQ 186

Query:   203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG-YNLTLL 251
              ++K  L  +G+  TQA    ++ H ++ S +     ++F    Y  T++
Sbjct:   187 -LLKDALTEKGVITTQA--ENMWIHMDIISKLKKDCNEIFPVAEYAYTMI 233

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

POMBASE|SPBC12C2.07c SPBC12C2.07c "spermidine synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 73/217 (33%), Positives = 126/217 (58%)

Query:    28 KSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
             K  W+ E   +      +  +  +L+ G+++YQD+ + +++ +G  LV+DG +Q+ E DE
Sbjct:    12 KDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDE 71

Query:    86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
             F Y E + H AL  HPNPK + ++GGG+G   RE+++H+ VE+ ++CDIDE+V++  K Y
Sbjct:    72 FSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131

Query:   146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
             L      F+ P++++ I D    L+  + ++DVII D +DP   GP   L+ K +++ ++
Sbjct:   132 LPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDP--DGPAEALFQKPYFQ-LL 188

Query:   206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
                L   G+  TQA    I  H  V S +   ++ VF
Sbjct:   189 SDALRGGGVITTQAECMWI--HLGVISNVLTAVKTVF 223

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0015940 "pantothenate biosynthetic process" evidence=ISO

ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 71/194 (36%), Positives = 114/194 (58%)

Query:    28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
             K  W+ E+ E       +  +N ILH  +++YQD+ + ++  +G  LV+D  +Q  E DE
Sbjct:    10 KDGWFSEQSEMWPGQAMNLRVNQILHHEKSKYQDVLVFESSDYGTVLVLDNVIQCTERDE 69

Query:    86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
             F Y E + H A+  HPNPK + ++GGG+G   RE+++H+TVE+ ++CDIDE V+   K Y
Sbjct:    70 FSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHETVEEAILCDIDEAVIRVSKKY 129

Query:   146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
             L      F  P +++ + D    L+ R+  +DVII D +DP EG P   L+ K ++E ++
Sbjct:   130 LPGMSIGFQHPNVKVHVGDGFEFLKQRQNEFDVIITDSSDP-EG-PAESLFQKPYFE-LL 186

Query:   206 KPRLNPEGIFVTQA 219
             +  L   G+  TQA
Sbjct:   187 RDALRDGGVITTQA 200

GO:0016768 "spermine synthase activity" evidence=RCA

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 71/190 (37%), Positives = 111/190 (58%)

Query:    31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
             W+ E  E      +S  +  +LH  ++ YQD  +  +K FG  LV+DG +Q+ E DEF Y
Sbjct:     8 WFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAY 67

Query:    89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
              E + H  L  HP+PK + ++GGG+G   RE+++H  VE V +C+ID+ V+E  +++L  
Sbjct:    68 QEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPN 127

Query:   149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
              +  F  P++ L I D    +  RK  +DVII D +DPI  GP   L+ +++YE ++K  
Sbjct:   128 MRVGFDHPKVTLFIGDGMEFMRQRKGEFDVIITDSSDPI--GPAQGLFERAYYE-LLKAA 184

Query:   209 LNPEGIFVTQ 218
             L P GI  +Q
Sbjct:   185 LAPGGIVCSQ 194

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

WB|WBGene00012909 spds-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 73/201 (36%), Positives = 122/201 (60%)

Query:    42 WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
             +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  +  HP
Sbjct:    48 FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107

Query:   102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
             +PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L+L 
Sbjct:   108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167

Query:   162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
               D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q G 
Sbjct:   168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ-GE 223

Query:   222 AGIFSHTEVFSCIYNTLRQVF 242
                +   ++ S + ++ R +F
Sbjct:   224 CP-WLDMKLISTVIHSARDLF 243

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7X6	ACL5_ARATH	2, ., 5, ., 1, ., 7, 9	0.6694	0.9601	0.7109	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.79	LOW CONFIDENCE prediction!
4th Layer	2.5.1.16	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019965001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (329 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	pVvSAMDC	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (360 aa)						•	•		0.919
	SAMDC	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (360 aa)						•	•		0.919
	GSVIVG00019871001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (350 aa)						•	•		0.913
	GSVIVG00017121001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (387 aa)						•	•		0.911
	grip58	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (265 aa)						•	•		0.910
	GSVIVG00016806001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (496 aa)	•					•	•		0.906
	GSVIVG00026899001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)						•			0.899
	GSVIVG00016601001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (445 aa)						•			0.899
	ACS1	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_1179, whole ge [...] (469 aa)						•			0.899
	GSVIVG00026399001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (348 aa)	•						•		0.557

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN02823	336	PLN02823, PLN02823, spermine synthase	1e-172
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	7e-82
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	4e-70
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	4e-68
TIGR00417	271	TIGR00417, speE, spermidine synthase	2e-66
PRK03612	521	PRK03612, PRK03612, spermidine synthase; Provision	2e-54
PLN02366	308	PLN02366, PLN02366, spermidine synthase	5e-48
COG4262	508	COG4262, COG4262, Predicted spermidine synthase wi	1e-41
PRK01581	374	PRK01581, speE, spermidine synthase; Validated	1e-28
PRK04457	262	PRK04457, PRK04457, spermidine synthase; Provision	8e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	9e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-05
PRK00536	262	PRK00536, speE, spermidine synthase; Provisional	2e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	0.002

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score =  478 bits (1231), Expect = e-172
 Identities = 181/244 (74%), Positives = 207/244 (84%), Gaps = 1/244 (0%)

Query: 1   MGEISCSNGISQANGADAKNVA-LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
             EI   NG S          A  + Y KS WYEEEIE++LRWS+A+NS+LHTG + +QD
Sbjct: 1   AVEIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IAL+DTKPFGK L+IDGK+QSAE DEF+YHESLVHPALLHHPNPKT+FIMGGGEGSTARE
Sbjct: 61  IALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           +LRHKTVEKVVMCDID+EVV+FC+ +L VN+EAF D RLEL+INDARAELE R E +DVI
Sbjct: 121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADP+EGGPCY+LYTKSFYE +VKP+LNP GIFVTQAGPAGI +H EVFS IYNTLR
Sbjct: 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR 240

Query: 240 QVFK 243
           QVFK
Sbjct: 241 QVFK 244

Length = 336

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score =  246 bits (630), Expect = 7e-82
 Identities = 88/215 (40%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E + +N   SF +  +L+  ++ +Q I + +T  FG+ L +DG + + E DEFIYHE
Sbjct: 5   WFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVN 149
            + H  L  HPNPK + I+GGG+G T RE+L+H +VEK+ + +IDE VVE C+ YL  + 
Sbjct: 65  MMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA 124

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
             A+ DPR+ELVI D    +   + S+DVII D  DP+  GP   L+TK FYE   +  L
Sbjct: 125 GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKR-AL 181

Query: 210 NPEGIFVTQAG-PAGIFSHTEVFSCIYNTLRQVFK 243
             +GIFV Q+G P   F   +    ++  L++VF 
Sbjct: 182 KEDGIFVAQSGSP---FYQADEIKDMHRKLKEVFP 213

Length = 283

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score =  216 bits (552), Expect = 4e-70
 Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  +  LR  F +  +L+  ++ YQDI + +++ FGK LV+DG +Q  E DEFIYHE
Sbjct: 5   WFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  LL HPNPK + I+GGG+G T RE+L+H  VE++ M +ID  V+E  + YL    
Sbjct: 65  MLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+E++I+D    L   +E +DVII D  DP+  GP   L+T+ FYE   +  L 
Sbjct: 125 GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV--GPAEALFTEEFYE-GCRRALK 181

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GIFV QAG    F   E  +  Y  + +VF 
Sbjct: 182 EDGIFVAQAG--SPFLQDEEIALAYRNVSRVFS 212

Length = 282

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score =  209 bits (535), Expect = 4e-68
 Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 7/215 (3%)

Query: 31  WYEEEIEEN--LRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E ++    L   + +  +L+  ++ YQDI + ++K FGK LV+DG++Q  E DEFIY
Sbjct: 2   WFTEILDLWPGLAVEYKVEKVLYEEKSEYQDIEIFESKTFGKILVLDGRVQLTERDEFIY 61

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  L  HPNPK + I+GGG+G   RE+++H +VEK+ + +IDE+V+EF K +L  
Sbjct: 62  HEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPS 121

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               F DPR+++VI D    L+     +DVII D  DP+  GP   L++K FY+ + +  
Sbjct: 122 LAGGFDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTDPV--GPAENLFSKEFYDLLKR-A 178

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L  +G+FVTQA     + H E+   I    ++VF 
Sbjct: 179 LKEDGVFVTQAE--SPWLHLELIINILKNGKKVFP 211

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score =  206 bits (526), Expect = 2e-66
 Identities = 83/213 (38%), Positives = 132/213 (61%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  ++N   +  ++ +L+  ++ +QD+ + +T+ FG  LV+DG +Q+ E DEFIYHE
Sbjct: 1   WFTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNPK + ++GGG+G   RE+L+HK+VE   + DIDE+V+E  + YL    
Sbjct: 61  MITHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA 120

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
            ++ DPR++LVI+D    L   + ++DVII D  DP+  GP   L+TK FYE ++K  LN
Sbjct: 121 GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPV--GPAETLFTKEFYE-LLKKALN 177

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           P+GIFV Q+     +   E+   +   L++ F 
Sbjct: 178 PDGIFVAQSE--SPWLQLELIIDLKRKLKEAFP 208

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional

 Score =  182 bits (465), Expect = 2e-54
 Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 14/219 (6%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIAL---LDTKPFGKALVIDGKLQSAEVDEFI 87
              + IE         + +++  +T YQ I +    + +     L ++G+LQ +  DE+ 
Sbjct: 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYR 282

Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE+LVHPA+     P+ + ++GGG+G   RE+L++  VE+V + D+D  + E  ++   
Sbjct: 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342

Query: 148 V---NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP--IEGGPCYKLYTKSFYE 202
           +   N  A  DPR+ +V +DA   L    E +DVII DL DP     G   KLY+  FY 
Sbjct: 343 LRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALG---KLYSVEFYR 399

Query: 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
            ++K RL P+G+ V Q+     +   + F  I  TL   
Sbjct: 400 -LLKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAA 435

Length = 521

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score =  160 bits (407), Expect = 5e-48
 Identities = 72/202 (35%), Positives = 115/202 (56%), Gaps = 6/202 (2%)

Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ +QD+ + ++  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 32  SLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   REI RH +VE++ +C+ID+ V++  K +       F DPR+ L I
Sbjct: 92  PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI 151

Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D    L++  E +YD II D +DP+  GP  +L+ K F+E V +  L P G+  TQA  
Sbjct: 152 GDGVEFLKNAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARA-LRPGGVVCTQA-- 206

Query: 222 AGIFSHTEVFSCIYNTLRQVFK 243
             ++ H ++   +    R+ FK
Sbjct: 207 ESMWLHMDLIEDLIAICRETFK 228

Length = 308

>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

 Score =  148 bits (375), Expect = 1e-41
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 15/203 (7%)

Query: 49  ILHTGETRYQDIALLDTKPFGK--ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           I+H  ++ YQ I +      G    L +DG LQ +  DE+ YHESLV+PAL      +++
Sbjct: 237 IIHAIQSPYQRIVVTR---RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSV 293

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVIN 163
            ++GGG+G   RE+L++  VE++ + D+D  ++E      V   +N+ +FSDPR+ +V +
Sbjct: 294 LVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND 353

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           DA   L +  + +DV+I DL DP       +LY+  FY  ++   L   G+ V QAG   
Sbjct: 354 DAFQWLRTAADMFDVVIVDLPDP-STPSIGRLYSVEFYR-LLSRHLAETGLMVVQAGSP- 410

Query: 224 IFSHTEVFSCIYNTLRQVFKCGY 246
            +    VF  I  T++     GY
Sbjct: 411 -YFTPRVFWRIDATIK---SAGY 429

Length = 508

>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated

 Score =  110 bits (277), Expect = 1e-28
 Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 7/176 (3%)

Query: 47  NSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           ++ L   ++ YQ+I LL        L +D +LQ + VDE IYHE+LVHP +    +PK +
Sbjct: 97  HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRV 154

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVIN 163
            I+GGG+G   RE+L+++TV  V + D+D  ++   ++    + +NK AF D R+ + + 
Sbjct: 155 LILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC 214

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           DA+  L S    YDVII D  DP        LYT   +  +    L  +G FV Q+
Sbjct: 215 DAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFARIAT-FLTEDGAFVCQS 268

Length = 374

>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 97  LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP 156
           LL +P P+ I  +G G GS A+ I  +    +    +I+ +V+   +++  +     +  
Sbjct: 61  LLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL---PENGE 117

Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           R E++  D    +   + S DVI+ D  D    G    L T+ F++   +  L+ +GIFV
Sbjct: 118 RFEVIEADGAEYIAVHRHSTDVILVDGFD--GEGIIDALCTQPFFD-DCRNALSSDGIFV 174

Query: 217 T 217
            
Sbjct: 175 V 175

Length = 262

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169
           G G G+ A  +       +V   DI    +E  +        A     +E++  DA    
Sbjct: 6   GCGTGALALALASGP-GARVTGVDISPVALELARK----AAAALLADNVEVLKGDAEELP 60

Query: 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
               ES+DVII D                 F E   +  L P G+ V  
Sbjct: 61  PEADESFDVIISDPP-----LHHLVEDLARFLE-EARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +   G G G+      R     +VV  ++D E     +  L     A   PR+ +V+
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRL---ALAGLAPRVRVVV 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFY-EFVVK--PRLNPEGIFV 216
            DAR  LE    S+D+++G+   P           +  Y  F+      L P G+ V
Sbjct: 58  GDARELLELPDGSFDLVLGNP--PYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +  +G G GS A E+ R     +V   D+  E++E  +     N +    PR+  V 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE----NAKLALGPRITFVQ 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
            DA   L+   E +D +         GG   +L         +   L P G  V  A
Sbjct: 58  GDAPDALDL-LEGFDAVFIGGG----GGDLLELLDA------LASLLKPGGRLVLNA 103

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 11/154 (7%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L       F++ E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNKQLL---FKNFLHIE 58

Query: 91  S--LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           S  L H         K + I+ G +   A ++ ++ T   V     DE++++   S+   
Sbjct: 59  SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGD 182
             E  ++         A+  L+   + YD+II  
Sbjct: 117 FHEVKNNKNFTH----AKQLLDLDIKKYDLIICL 146

Length = 262

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)

Query: 102 NPKTIFIMGGGEG-STAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
            PK I  +G   G S       L      ++   + DEE  E  +  L    EA  D R+
Sbjct: 59  GPKRILEIGTAIGYSALWMALALPDDG--RLTTIERDEERAEIARENL---AEAGVDDRI 113

Query: 159 ELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           EL++     ++ SR    S+D++  D AD        K     + E  + P L P G+ V
Sbjct: 114 ELLLGGDALDVLSRLLDGSFDLVFID-AD--------KADYPEYLERAL-PLLRPGGLIV 163

Query: 217 T 217
            
Sbjct: 164 A 164

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	100.0
PLN02823	336	spermine synthase	100.0
PRK00811	283	spermidine synthase; Provisional	100.0
PRK00536	262	speE spermidine synthase; Provisional	100.0
PLN02366	308	spermidine synthase	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	100.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	100.0
PRK01581	374	speE spermidine synthase; Validated	100.0
COG4262	508	Predicted spermidine synthase with an N-terminal m	100.0
PRK03612	521	spermidine synthase; Provisional	100.0
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	100.0
PRK04457	262	spermidine synthase; Provisional	99.95
COG2521	287	Predicted archaeal methyltransferase [General func	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.68
COG4123	248	Predicted O-methyltransferase [General function pr	99.66
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.62
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.59
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.53
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.52
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.51
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.5
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.49
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.47
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.46
COG2890	280	HemK Methylase of polypeptide chain release factor	99.46
COG4122	219	Predicted O-methyltransferase [General function pr	99.46
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.45
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.45
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.45
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.45
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.44
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.44
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.43
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.42
PLN02476	278	O-methyltransferase	99.42
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.42
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.41
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.41
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.41
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.41
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.4
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.4
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.39
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.39
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.39
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.39
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.38
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.38
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.38
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.38
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.38
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.38
PRK07402	196	precorrin-6B methylase; Provisional	99.37
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.36
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.36
PLN02244	340	tocopherol O-methyltransferase	99.36
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.36
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.34
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.34
PRK14967	223	putative methyltransferase; Provisional	99.34
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.32
PRK11207	197	tellurite resistance protein TehB; Provisional	99.32
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.32
PLN03075	296	nicotianamine synthase; Provisional	99.32
PLN02672	1082	methionine S-methyltransferase	99.32
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.32
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.31
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.31
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.3
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.3
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.29
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.29
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.29
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.28
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.27
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.27
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.27
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.26
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.26
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.25
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.25
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.25
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.25
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.25
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.25
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.25
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.23
PRK14968	188	putative methyltransferase; Provisional	99.23
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.23
PRK04266	226	fibrillarin; Provisional	99.22
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.22
PHA03411	279	putative methyltransferase; Provisional	99.22
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.22
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.21
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.21
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.2
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.19
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.19
PLN02490	340	MPBQ/MSBQ methyltransferase	99.19
PLN02336	475	phosphoethanolamine N-methyltransferase	99.18
PHA03412	241	putative methyltransferase; Provisional	99.18
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.18
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.17
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.17
PRK12335	287	tellurite resistance protein TehB; Provisional	99.16
TIGR00438	188	rrmJ cell division protein FtsJ.	99.16
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.14
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.14
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.14
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.13
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.13
PRK06922	677	hypothetical protein; Provisional	99.12
PRK08317	241	hypothetical protein; Provisional	99.12
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.12
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.12
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.11
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.11
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.11
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.09
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.09
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.07
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.07
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.07
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.07
KOG4300	252	consensus Predicted methyltransferase [General fun	99.07
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.06
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.06
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.05
PRK05785	226	hypothetical protein; Provisional	99.04
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.04
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.03
PTZ00146	293	fibrillarin; Provisional	99.03
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.02
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.02
PLN02336	475	phosphoethanolamine N-methyltransferase	99.01
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.0
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.0
TIGR03438	301	probable methyltransferase. This model represents	98.99
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.99
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.99
KOG2899	288	consensus Predicted methyltransferase [General fun	98.97
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.97
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.97
KOG1271	227	consensus Methyltransferases [General function pre	98.96
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.96
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.95
KOG2904	328	consensus Predicted methyltransferase [General fun	98.93
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.92
KOG3010	261	consensus Methyltransferase [General function pred	98.91
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.91
PRK06202	232	hypothetical protein; Provisional	98.89
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.89
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.89
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.86
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.83
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.78
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.77
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.76
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.75
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.75
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.71
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.69
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.68
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.67
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.67
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.65
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.64
COG2520	341	Predicted methyltransferase [General function pred	98.63
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.63
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.61
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.6
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.59
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.59
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.57
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.55
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.54
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.54
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.52
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.45
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.44
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.44
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.4
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.38
PRK10742	250	putative methyltransferase; Provisional	98.37
KOG2940	325	consensus Predicted methyltransferase [General fun	98.33
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.33
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.27
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.26
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.26
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.25
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.25
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.23
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.22
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.21
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.21
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.19
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.18
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.17
PRK04148	134	hypothetical protein; Provisional	98.12
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.08
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	98.05
COG4076	252	Predicted RNA methylase [General function predicti	98.03
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.03
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.02
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.02
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.99
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.92
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.91
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.9
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.89
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.83
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.82
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.82
KOG2361	264	consensus Predicted methyltransferase [General fun	97.78
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.72
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.65
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.63
KOG2730	263	consensus Methylase [General function prediction o	97.62
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.59
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.57
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.56
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.55
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.51
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.43
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.43
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.37
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.36
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.31
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.31
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.25
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.21
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.18
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.14
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.99
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.96
KOG3115	249	consensus Methyltransferase-like protein [General	96.94
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.92
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.89
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.89
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.85
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.81
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.81
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.8
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.77
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.74
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.73
COG0286	489	HsdM Type I restriction-modification system methyl	96.73
COG3897	218	Predicted methyltransferase [General function pred	96.73
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.71
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.68
PF13679	141	Methyltransf_32: Methyltransferase domain	96.6
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.51
PRK11524	284	putative methyltransferase; Provisional	96.47
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.45
PTZ00357	1072	methyltransferase; Provisional	96.44
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.33
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.3
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.25
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.14
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.85
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.73
COG1568	354	Predicted methyltransferases [General function pre	95.72
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.59
PRK13699	227	putative methylase; Provisional	95.55
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.54
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.51
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.49
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.3
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.27
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.26
PHA01634	156	hypothetical protein	95.06
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.04
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.94
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.93
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.73
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	94.73
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.72
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.68
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	94.66
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.58
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.5
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.38
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.26
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.12
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	94.06
COG4121	252	Uncharacterized conserved protein [Function unknow	94.06
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.03
PRK11524	284	putative methyltransferase; Provisional	94.02
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.99
COG2961	279	ComJ Protein involved in catabolism of external DN	93.96
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.87
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.85
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.78
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.62
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.59
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.37
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.21
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.0
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.96
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.85
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.78
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.69
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	92.66
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	92.61
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.5
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.49
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.35
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.34
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.04
PRK13699	227	putative methylase; Provisional	92.0
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.94
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	91.88
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.85
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	91.82
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.81
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.76
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.69
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.5
COG3129	292	Predicted SAM-dependent methyltransferase [General	91.44
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	91.41
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.37
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.36
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.24
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.13
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.1
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.1
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.08
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.05
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.98
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.89
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.81
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	90.76
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.71
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.66
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.6
PRK10458	467	DNA cytosine methylase; Provisional	90.57
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.47
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.39
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.36
COG4798	238	Predicted methyltransferase [General function pred	90.18
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.15
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	89.71
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	89.67
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	89.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.65
PLN02740	381	Alcohol dehydrogenase-like	89.62
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	89.54
KOG1331	293	consensus Predicted methyltransferase [General fun	89.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	89.38
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	89.37
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.34
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.3
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	89.22
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	89.2
KOG1227	351	consensus Putative methyltransferase [General func	89.09
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	89.06
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	89.02
PLN02827	378	Alcohol dehydrogenase-like	89.0
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	88.99
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.96
TIGR00497	501	hsdM type I restriction system adenine methylase (	88.79
PTZ00117	319	malate dehydrogenase; Provisional	88.79
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.66
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.64
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	88.6
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.59
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	88.51
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.48
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	88.36
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.34
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	88.28
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.27
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.21
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.14
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	88.08
PLN02494	477	adenosylhomocysteinase	87.9
PRK07417	279	arogenate dehydrogenase; Reviewed	87.72
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	87.63
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	87.62
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.51
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	87.37
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	87.07
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	87.04
PRK09496	453	trkA potassium transporter peripheral membrane com	86.97
KOG2912	419	consensus Predicted DNA methylase [Function unknow	86.88
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.63
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	86.53
PRK10637	457	cysG siroheme synthase; Provisional	86.48
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.38
PRK07904	253	short chain dehydrogenase; Provisional	86.27
COG4017	254	Uncharacterized protein conserved in archaea [Func	86.19
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	85.86
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	85.83
PRK07340	304	ornithine cyclodeaminase; Validated	85.81
COG1565	370	Uncharacterized conserved protein [Function unknow	85.72
PRK06223	307	malate dehydrogenase; Reviewed	85.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.59
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.5
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	85.46
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	85.22
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	85.06
PRK07102	243	short chain dehydrogenase; Provisional	84.99
PRK03659	601	glutathione-regulated potassium-efflux system prot	84.95
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	84.75
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	84.66
PLN02256	304	arogenate dehydrogenase	84.57
PRK08507	275	prephenate dehydrogenase; Validated	84.44
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	84.43
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	84.19
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	84.14
PRK06949	258	short chain dehydrogenase; Provisional	84.03
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	83.94
PRK06194	287	hypothetical protein; Provisional	83.92
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	83.86
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	83.81
PTZ00075	476	Adenosylhomocysteinase; Provisional	83.78
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	83.76
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	83.72
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	83.69
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	83.66
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	83.6
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	83.52
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	83.47
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	83.42
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	83.4
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	83.23
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	83.09
PRK10669	558	putative cation:proton antiport protein; Provision	82.96
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	82.93
COG0569	225	TrkA K+ transport systems, NAD-binding component [	82.62
PRK08328	231	hypothetical protein; Provisional	82.56
PRK06172	253	short chain dehydrogenase; Provisional	82.55
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	82.46
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.42
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.32
PRK08618	325	ornithine cyclodeaminase; Validated	82.18
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	82.11
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	82.01
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	81.88
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	81.86
PLN02702	364	L-idonate 5-dehydrogenase	81.78
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	81.39
PRK07035	252	short chain dehydrogenase; Provisional	81.36
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	81.36
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.35
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	81.18
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	81.14
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.13
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	81.08
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	81.06
PRK12548	289	shikimate 5-dehydrogenase; Provisional	80.91
PRK07454	241	short chain dehydrogenase; Provisional	80.87
KOG2920	282	consensus Predicted methyltransferase [General fun	80.8
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	80.74
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.7
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	80.68
PLN02427	386	UDP-apiose/xylose synthase	80.62
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	80.61
PRK05867	253	short chain dehydrogenase; Provisional	80.54
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	80.53
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.5
PRK12829	264	short chain dehydrogenase; Provisional	80.48
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	80.38
PRK07890	258	short chain dehydrogenase; Provisional	80.12

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=100.00  E-value=6.2e-46  Score=320.25  Aligned_cols=216  Identities=46%  Similarity=0.833  Sum_probs=197.5

Q ss_pred             ceEEeeec---cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534           30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (251)
Q Consensus        30 ~w~~~~~~---~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V  106 (251)
                      +|++|.++   ++.+..|++.+++++.+|+||+|.|++++.+|+++++||.+|+++++++.|||+|+|+|++.++++++|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V   80 (246)
T PF01564_consen    1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV   80 (246)
T ss_dssp             TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred             CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence            69999999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD  185 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~-~fD~Ii~D~~~  185 (251)
                      |+||+|+|+++++++++++..+|++|||||+++++|+++|+.....+++||++++++||+.|+++..+ +||+|++|+++
T Consensus        81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen   81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD  160 (246)
T ss_dssp             EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred             EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence            99999999999999999877899999999999999999998654446789999999999999998777 99999999999


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                      |.  ++...|++.+||+. ++++|+|||++++|..+|  +.....++.+.++|+++|+.|.+|..
T Consensus       161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~  220 (246)
T PF01564_consen  161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTA  220 (246)
T ss_dssp             TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEE
Confidence            77  44456999999999 799999999999999777  56788999999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02823 spermine synthase

Probab=100.00  E-value=3.6e-45  Score=327.15  Aligned_cols=246  Identities=74%  Similarity=1.224  Sum_probs=214.0

Q ss_pred             ceeeecCCcccccCCccCcCCCC-ccccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccc
Q 025534            3 EISCSNGISQANGADAKNVALTG-YRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA   81 (251)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~   81 (251)
                      ||--.||.|..........++.. +-.+.|+.|...++.++.+.+.++|++.+|+||+|.|++++.+|++|++||..|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~   82 (336)
T PLN02823          3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA   82 (336)
T ss_pred             ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence            56667777754332211112211 22568999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE
Q 025534           82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV  161 (251)
Q Consensus        82 ~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~  161 (251)
                      +.+++.|||+|+|++++.+++|++||+||+|+|+++++++++++..+|++||+|++++++|+++|+.+.+.+.+||++++
T Consensus        83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~  162 (336)
T PLN02823         83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI  162 (336)
T ss_pred             cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence            99999999999999999999999999999999999999999877789999999999999999999876556778999999


Q ss_pred             EcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHH-HHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       162 ~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~-~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      .+|+++|++..+++||+|++|.++|...+|+.+|++.+||+ . ++++|+|||++++|.+++..+...+.++.++++|++
T Consensus       163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~  241 (336)
T PLN02823        163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ  241 (336)
T ss_pred             EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence            99999999877789999999999886545667899999998 8 699999999999998876445567789999999999


Q ss_pred             hCCceeeec
Q 025534          241 VFKCGYNLT  249 (251)
Q Consensus       241 ~F~~v~~~~  249 (251)
                      +||+|.+|.
T Consensus       242 vF~~v~~y~  250 (336)
T PLN02823        242 VFKYVVPYT  250 (336)
T ss_pred             hCCCEEEEE
Confidence            999999986

>PRK00811 spermidine synthase; Provisional

Probab=100.00  E-value=4.7e-44  Score=314.72  Aligned_cols=217  Identities=41%  Similarity=0.748  Sum_probs=199.3

Q ss_pred             ccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (251)
Q Consensus        28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL  107 (251)
                      ..+|+.|..+++.++.+.++++|++.+|+||+|.|++++++||+|++||..|+++++++.|||+++|+|++.++++++||
T Consensus         2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL   81 (283)
T PRK00811          2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL   81 (283)
T ss_pred             CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (251)
Q Consensus       108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~  186 (251)
                      +||||+|.++++++++++..+|++||+|+++++.|+++++. +.+.+++||++++.+|+++|++...++||+|++|+++|
T Consensus        82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp  161 (283)
T PRK00811         82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP  161 (283)
T ss_pred             EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence            99999999999999987778999999999999999999873 33334689999999999999987678999999999988


Q ss_pred             CCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      .  +|...|++.+||+. ++++|+|||+++++.++|  +...+.++++.++|+++|+++.+|.
T Consensus       162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~  219 (283)
T PRK00811        162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQ  219 (283)
T ss_pred             C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEE
Confidence            7  55568999999999 799999999999998877  5567889999999999999999886

>PRK00536 speE spermidine synthase; Provisional

Probab=100.00  E-value=2e-44  Score=311.26  Aligned_cols=200  Identities=17%  Similarity=0.222  Sum_probs=181.6

Q ss_pred             ceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEE
Q 025534           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (251)
Q Consensus        30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~i  109 (251)
                      +|++|..+++.+..++++++|++.+|+||+|+|++++.|||+|.|| ..|.++.||+.|||||+|+|++.|++|+|||+|
T Consensus         1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi   79 (262)
T PRK00536          1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_pred             CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence            5999999999999999999999999999999999999999999999 555689999999999999999999999999999


Q ss_pred             ecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025534          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (251)
Q Consensus       110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~  189 (251)
                      |+|+|+++++++||+  .+|+.||||++|+++||+|++...++++|||++++.    .+.+...++||+||+|..     
T Consensus        80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~-----  148 (262)
T PRK00536         80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE-----  148 (262)
T ss_pred             cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence            999999999999996  399999999999999999998655678999999997    133323478999999953     


Q ss_pred             CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       190 ~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                            ++++||+. ++++|+|||++++|+++|  +...+.++++.++++++|+.+.||..
T Consensus       149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~  200 (262)
T PRK00536        149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVA  200 (262)
T ss_pred             ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEe
Confidence                  34699999 799999999999999999  66788999999999999999999964

>PLN02366 spermidine synthase

Probab=100.00  E-value=6.5e-44  Score=316.04  Aligned_cols=219  Identities=33%  Similarity=0.615  Sum_probs=198.1

Q ss_pred             CccccceEEeee--ccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCC
Q 025534           25 GYRKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN  102 (251)
Q Consensus        25 ~~~~~~w~~~~~--~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~  102 (251)
                      .....+|+.|..  +++....++++++|++.+|+||+|.|++++.+|++|++||.+|+++++++.|+|+++|+|++.+++
T Consensus        12 ~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~   91 (308)
T PLN02366         12 STVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN   91 (308)
T ss_pred             chhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCC
Confidence            356689999884  577889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~  181 (251)
                      +++||+||||+|+++++++++++..+|++||+|++++++|+++|+.....+++||++++++|+++|+++. +++||+|++
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            9999999999999999999997778999999999999999999975333467899999999999999765 578999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC-ceeee
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK-CGYNL  248 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~-~v~~~  248 (251)
                      |.++|.  +|...|++.+||+. ++++|+|||++++|.++|  +...+.++.+.++|+++|+ .+..|
T Consensus       172 D~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~  234 (308)
T PLN02366        172 DSSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYA  234 (308)
T ss_pred             cCCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEE
Confidence            999887  56678999999999 799999999999999887  7778899999999999995 55443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-43  Score=308.63  Aligned_cols=218  Identities=41%  Similarity=0.740  Sum_probs=203.3

Q ss_pred             ccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (251)
Q Consensus        28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL  107 (251)
                      ..+|+.|..+++.+..+.++.++++++|.||.|.+++++.+|++|.+||..|+++.+++.|||+++|++++.++++++||
T Consensus         2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL   81 (282)
T COG0421           2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL   81 (282)
T ss_pred             CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence            46899999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025534          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (251)
Q Consensus       108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~  187 (251)
                      +||+|.|++++++++|.+.+++++||||++++++||++|+.......+||++++++|+++|+++..++||+||+|.++|.
T Consensus        82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~  161 (282)
T COG0421          82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV  161 (282)
T ss_pred             EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence            99999999999999998889999999999999999999986543334899999999999999988779999999999995


Q ss_pred             CCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       188 ~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                        +|+..|++.+||+. ++++|+|+|++++|+++|  +...+....+.+.++.+|+.+.+|..
T Consensus       162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~  219 (282)
T COG0421         162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVA  219 (282)
T ss_pred             --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhcccccccee
Confidence              88889999999999 699999999999999887  66678899999999999999887753

>TIGR00417 speE spermidine synthase

Probab=100.00  E-value=3e-40  Score=288.92  Aligned_cols=214  Identities=38%  Similarity=0.750  Sum_probs=196.2

Q ss_pred             eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEe
Q 025534           31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG  110 (251)
Q Consensus        31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG  110 (251)
                      |+.|..+++.+..+.++++|++.+|+||+|.|++++++|++|++||..|+++.+++.|+++++|++++.+++|++||+||
T Consensus         1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG   80 (270)
T TIGR00417         1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG   80 (270)
T ss_pred             CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence            89999999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             cCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCC
Q 025534          111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG  190 (251)
Q Consensus       111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~  190 (251)
                      ||+|.++++++++.+..++++||+|+++++.|+++++.....+.+++++++.+|++++++...++||+|++|++++.  .
T Consensus        81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~  158 (270)
T TIGR00417        81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G  158 (270)
T ss_pred             CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence            99999999999986567999999999999999999865434456899999999999999877789999999998776  4


Q ss_pred             cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       191 p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      +...|++.+|++. ++++|+|||+++++..+|  +...+.++.+.++++++|+++.+|.
T Consensus       159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~  214 (270)
T TIGR00417       159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYT  214 (270)
T ss_pred             cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            5567899999999 799999999999998777  5678899999999999999999885

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=100.00  E-value=1.4e-39  Score=290.38  Aligned_cols=237  Identities=32%  Similarity=0.467  Sum_probs=196.4

Q ss_pred             eeecCCc-----ccccCCccCcCCCCcccc---ceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcC
Q 025534            5 SCSNGIS-----QANGADAKNVALTGYRKS---CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG   76 (251)
Q Consensus         5 ~~~~~~~-----~~~~~~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg   76 (251)
                      +-+.||.     |-|...+|||-+-+-..+   .|-  +.+- ..+..+..++|++.+|+||+|.|+++..+  .|+|||
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG  124 (374)
T PRK01581         50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EISL-KEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK  124 (374)
T ss_pred             eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHHH-HHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence            3455664     556677788776443332   232  2221 12223556899999999999999999976  689999


Q ss_pred             ccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh---cccCCC
Q 025534           77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF  153 (251)
Q Consensus        77 ~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~  153 (251)
                      .+|+++.|+++|||+++|+++..+++|++||+||||+|.++++++++++..+|++||+|++|+++|++++.   +++..+
T Consensus       125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~  204 (374)
T PRK01581        125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF  204 (374)
T ss_pred             eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence            99999999999999999999999999999999999999999999998777899999999999999998543   344456


Q ss_pred             CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHH
Q 025534          154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (251)
Q Consensus       154 ~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~  233 (251)
                      .+||++++++|+++|++...++||+|++|+++|.. .+...+++.+||+. ++++|+|||+++++.++|  +.....++.
T Consensus       205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~  280 (374)
T PRK01581        205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS  280 (374)
T ss_pred             CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence            78999999999999998777899999999988763 23468999999999 799999999999999887  555677889


Q ss_pred             HHHHHHhhCCceeeecc
Q 025534          234 IYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       234 i~~~l~~~F~~v~~~~~  250 (251)
                      +.++|+++|+.+.+|..
T Consensus       281 i~~tL~~af~~v~~y~t  297 (374)
T PRK01581        281 IGNTIEHAGLTVKSYHT  297 (374)
T ss_pred             HHHHHHHhCCceEEEEE
Confidence            99999999999998864

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=266.83  Aligned_cols=210  Identities=31%  Similarity=0.503  Sum_probs=189.8

Q ss_pred             eccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchH
Q 025534           36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS  115 (251)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~  115 (251)
                      ++...++.+..+++||..+|+||+|-|.+.++. +.|++||..|.+++||++|||.++++++...+..++||++|+|+|.
T Consensus       224 it~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d-~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGL  302 (508)
T COG4262         224 ITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDD-LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGL  302 (508)
T ss_pred             eeehHHHHhhcCceeeeccCccceEEEEEecCc-eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchH
Confidence            344456667788999999999999999998753 7789999999999999999999999988777788999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEECChHHHHHHHhch---hcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcc
Q 025534          116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC  192 (251)
Q Consensus       116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~---~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~  192 (251)
                      .+++++|+|...+|+-||+||+|++++++..   ..|++.+.|||++++..|+++|+++..++||+||+|.+||.... .
T Consensus       303 AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~  381 (508)
T COG4262         303 ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-I  381 (508)
T ss_pred             HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-h
Confidence            9999999987899999999999999999653   36778899999999999999999988899999999999998432 3


Q ss_pred             cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       193 ~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                      ..+|+.|||.. ++++|+++|++++|.++|  +..++.++++.+|+++..-.++||.+
T Consensus       382 ~rlYS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv  436 (508)
T COG4262         382 GRLYSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHV  436 (508)
T ss_pred             hhhhhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEE
Confidence            68999999999 899999999999999999  78889999999999999888999975

>PRK03612 spermidine synthase; Provisional

Probab=100.00  E-value=6.4e-35  Score=275.96  Aligned_cols=215  Identities=32%  Similarity=0.536  Sum_probs=184.6

Q ss_pred             eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecC-ce--eEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534           31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (251)
Q Consensus        31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~-~g--~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL  107 (251)
                      |..+.........+..++++++.+|+||+|.|++++. +|  +.|++||..|+++.+++.|+|+++|++++.++++++||
T Consensus       223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL  302 (521)
T PRK03612        223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL  302 (521)
T ss_pred             HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence            4444444444555677899999999999999999876 35  88999999999999999999999999998888999999


Q ss_pred             EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch--h-cccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~--~-~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +||||+|.++++++++++..+|++||+|+++++.+++++  + .+...+++||++++++|++++++..+++||+|++|++
T Consensus       303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~  382 (521)
T PRK03612        303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP  382 (521)
T ss_pred             EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence            999999999999999865579999999999999999953  3 3444567899999999999999877789999999998


Q ss_pred             CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCceeeecc
Q 025534          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGYNLTL  250 (251)
Q Consensus       185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~  250 (251)
                      ++.... ..++++.|||+. ++++|+|||++++|..+|  +.+.+.++++.++++++ | .+.+|..
T Consensus       383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~  444 (521)
T PRK03612        383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHV  444 (521)
T ss_pred             CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEe
Confidence            876222 257999999999 799999999999999888  56788899999999999 8 7888764

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-33  Score=241.02  Aligned_cols=222  Identities=32%  Similarity=0.612  Sum_probs=205.5

Q ss_pred             CCCCccccceEEeeecc-----ccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhH
Q 025534           22 ALTGYRKSCWYEEEIEE-----NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA   96 (251)
Q Consensus        22 ~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~   96 (251)
                      +..+....+|+.|....     +....+.++++++.++|.||++.|+++.-+|+.|.+||..|.++++++.|.||++|+|
T Consensus        36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~  115 (337)
T KOG1562|consen   36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA  115 (337)
T ss_pred             cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence            56778889999988763     7888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCc
Q 025534           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES  175 (251)
Q Consensus        97 ~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~  175 (251)
                      ++.+++|++||+||+|+|++.++..+|..+..++.+|+|..+++..++|++.....++++++.++.+|++.|++.. .++
T Consensus       116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~  195 (337)
T KOG1562|consen  116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP  195 (337)
T ss_pred             cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence            9999999999999999999999999998889999999999999999999997666799999999999999999876 589


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce-eee
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG-YNL  248 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v-~~~  248 (251)
                      ||+||.|+.+|.  +|+..+|.+.+|+. +++.||+||+++++..+-  |...+...+..+..+.+|+.+ +||
T Consensus       196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~  264 (337)
T KOG1562|consen  196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAI  264 (337)
T ss_pred             ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceee
Confidence            999999999998  88889999999999 899999999999998654  888899999999999999966 354

>PRK04457 spermidine synthase; Provisional

Probab=99.95  E-value=1.1e-26  Score=202.34  Aligned_cols=181  Identities=22%  Similarity=0.379  Sum_probs=147.2

Q ss_pred             EeecCCCcEEEEEecCceeEEEEcCc-cccc----ccc--chhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcC
Q 025534           52 TGETRYQDIALLDTKPFGKALVIDGK-LQSA----EVD--EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK  124 (251)
Q Consensus        52 ~~~s~~~~i~v~~~~~~g~~l~ldg~-~q~~----~~~--~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~  124 (251)
                      -.++.|++|.|+|... .|+|.+|+. .|+.    .|.  .+.|+++|.. .+...+++++||+||||+|.++..++++.
T Consensus        11 ~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~   88 (262)
T PRK04457         11 PAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYL   88 (262)
T ss_pred             cccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence            4567799999999886 589999884 6764    222  3468887753 34445678999999999999999998876


Q ss_pred             CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHH
Q 025534          125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV  204 (251)
Q Consensus       125 ~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~  204 (251)
                      +..+|++||+||++++.|+++|..+.   .+++++++++|+++++....++||+|++|.++..  .+...+.+.+|++. 
T Consensus        89 p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~-  162 (262)
T PRK04457         89 PDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD-  162 (262)
T ss_pred             CCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH-
Confidence            66799999999999999999987643   3589999999999999876789999999987644  33357889999999 


Q ss_pred             HcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       205 ~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      ++++|+|||++++|.     +.....+..++++++++|+++
T Consensus       163 ~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~  198 (262)
T PRK04457        163 CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGR  198 (262)
T ss_pred             HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCc
Confidence            699999999999986     333456788899999999863

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.76  E-value=2.4e-17  Score=137.81  Aligned_cols=166  Identities=22%  Similarity=0.268  Sum_probs=134.2

Q ss_pred             eEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc
Q 025534           70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN  149 (251)
Q Consensus        70 ~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~  149 (251)
                      -++.+||..+..+.....+.+++......-..++.+|||.+.|-|.++.+.++. ++.+|..||.||.++++|.-+ +++
T Consensus       102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS  179 (287)
T COG2521         102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS  179 (287)
T ss_pred             CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence            467899987776655566777777665544457899999999999999999996 556999999999999999876 333


Q ss_pred             cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCC-CCC
Q 025534          150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH  227 (251)
Q Consensus       150 ~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~-~~~  227 (251)
                      .+ +...+++++.+|+.+++++. +++||+||.|||--.   .+.+||+.+||++ +.++|+|||.++-.++.|+. +..
T Consensus       180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG  254 (287)
T COG2521         180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG  254 (287)
T ss_pred             cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence            32 23458999999999999875 477999999998533   2358999999999 89999999999988888863 345


Q ss_pred             hHHHHHHHHHHHhhC
Q 025534          228 TEVFSCIYNTLRQVF  242 (251)
Q Consensus       228 ~~~~~~i~~~l~~~F  242 (251)
                      .+..+.+.+.|+++.
T Consensus       255 ~d~~~gVa~RLr~vG  269 (287)
T COG2521         255 LDLPKGVAERLRRVG  269 (287)
T ss_pred             CChhHHHHHHHHhcC
Confidence            678889999999983

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.68  E-value=1.1e-16  Score=120.93  Aligned_cols=109  Identities=20%  Similarity=0.197  Sum_probs=84.2

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||||||+|.++.++++..+..+|++||+||++++.|++++...+   ..++++++++|+ .+.....++||+|++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            579999999999999999994345799999999999999999984322   458999999999 4444445789999998


Q ss_pred             C-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      . ..+.  ... .-...++++. ++++|+|||+++++.
T Consensus        78 ~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            7 2211  010 0123468888 799999999999864

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.66  E-value=1.8e-15  Score=129.44  Aligned_cols=145  Identities=20%  Similarity=0.306  Sum_probs=109.7

Q ss_pred             chhHH-HHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc
Q 025534           85 EFIYH-ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN  163 (251)
Q Consensus        85 ~~~y~-e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~  163 (251)
                      .+.|. +.+....+...+..++|||||||.|.++..++++.+..+|++||+++++.+.|++++.++.   -.+|++++++
T Consensus        26 ~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~  102 (248)
T COG4123          26 GFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEA  102 (248)
T ss_pred             ccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehh
Confidence            34443 3333333333445799999999999999999987444799999999999999999998764   4589999999


Q ss_pred             chHHHHhcCC-CceeEEEEcCCCCCC--C-Cc--c-------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHH
Q 025534          164 DARAELESRK-ESYDVIIGDLADPIE--G-GP--C-------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV  230 (251)
Q Consensus       164 D~~~~l~~~~-~~fD~Ii~D~~~~~~--~-~p--~-------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~  230 (251)
                      |.-+|.+... .+||+|++|||....  . .+  .       ..+.-.++++. ++++|||||.+.+       .++++.
T Consensus       103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~-------V~r~er  174 (248)
T COG4123         103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAF-------VHRPER  174 (248)
T ss_pred             hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEE-------EecHHH
Confidence            9999987644 469999999983211  0 11  0       12223678887 7999999999987       356778


Q ss_pred             HHHHHHHHHh
Q 025534          231 FSCIYNTLRQ  240 (251)
Q Consensus       231 ~~~i~~~l~~  240 (251)
                      +.+++..|++
T Consensus       175 l~ei~~~l~~  184 (248)
T COG4123         175 LAEIIELLKS  184 (248)
T ss_pred             HHHHHHHHHh
Confidence            8899999997

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.62  E-value=3e-15  Score=114.06  Aligned_cols=112  Identities=27%  Similarity=0.375  Sum_probs=86.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~  181 (251)
                      +.+|||+|||+|.++..+++.. ..+++++|+||..+++++++++..+   ...+++++++|+++.... ..++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEE
Confidence            3589999999999999999876 5799999999999999999988653   346899999999998733 4689999999


Q ss_pred             cCCCCCC-C-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIE-G-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~-~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|.... . .....-...+|++. +.++|+|||++++.+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT  115 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9984321 0 11112234689999 799999999998753

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.59  E-value=1.8e-15  Score=123.69  Aligned_cols=109  Identities=20%  Similarity=0.252  Sum_probs=84.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ..++|||+|||+|.++..++++.+..+|+++|+|+.+++.+++++..++    -.+++++..|..+.+.  .++||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~~~~~~--~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDLFEALP--DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----cccccccccccccccc--ccceeEEEE
Confidence            6689999999999999999997665689999999999999999998764    1239999999877653  589999999


Q ss_pred             cCCCCCCCCcc-cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |||...  +.. ......+|++. ++++|+|||.+++-.
T Consensus       105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVI  140 (170)
T ss_dssp             ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEe
Confidence            998433  211 12234788998 799999999886544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.55  E-value=1.9e-13  Score=114.70  Aligned_cols=129  Identities=17%  Similarity=0.154  Sum_probs=96.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~I  179 (251)
                      +..+|||||||+|..+..+++..+..+|++||+++.+++.|++++..++    .++++++++|+.+.+.  ..+++||+|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V  115 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI  115 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence            5678999999999999999876555689999999999999999876442    2679999999944443  235789999


Q ss_pred             EEcCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++.++|+...+.  .......+++. +.++|+|||++++.+.      .......+.+.+++.
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~  172 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE  172 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence            9987666532111  12234789999 7999999999998642      345566677777653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=2.1e-13  Score=113.77  Aligned_cols=129  Identities=13%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      +..+|||||||+|.++..+++..+..++++||+++.+++.|+++....+    -++++++.+|+.++...  ..+.+|.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence            4568999999999999988886556799999999999999998876432    25899999999887643  23589999


Q ss_pred             EEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++.++||....  ...+...++++. +.++|+|||.+.+.+.      ....+..+.+.+.+.
T Consensus        92 ~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        92 FLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN  148 (194)
T ss_pred             EEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence            999988873221  123455789999 7999999999988652      344566666776654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.53  E-value=2.1e-13  Score=113.17  Aligned_cols=103  Identities=19%  Similarity=0.280  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|+++...++    -++++++.+|+.++. . .++||+|+
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~-~-~~~fDlV~  117 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFG-Q-EEKFDVVT  117 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCC-C-CCCccEEE
Confidence            44789999999999999988875455799999999999999999887553    235999999998853 2 57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++...    .      -.++++. +.+.|+|||++++..+
T Consensus       118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKG  146 (187)
T ss_pred             Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeC
Confidence            97531    1      1478888 7999999999998754

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.52  E-value=1.1e-12  Score=120.51  Aligned_cols=126  Identities=25%  Similarity=0.319  Sum_probs=91.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      ++++|||+|||+|+++..++.. +..+|++||+|+.+++.|++++..++  +...+++++.+|++++++.   .+++||+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            5789999999999998876664 45699999999999999999998774  2224899999999999854   2468999


Q ss_pred             EEEcCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534          179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~  235 (251)
                      |++|||.-.. .. ..+.     -.++++. +.++|+|||++++-++++  ....+.+..++
T Consensus       297 VilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~--~~~~~~f~~~v  353 (396)
T PRK15128        297 IVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG--LMTSDLFQKII  353 (396)
T ss_pred             EEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC--cCCHHHHHHHH
Confidence            9999984221 11 1111     1244455 578999999999866655  33444444443

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.51  E-value=5.7e-13  Score=121.41  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=92.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~  178 (251)
                      ++++||++-|-||+++.+++.. ++.+||.||+|...+++|++++.+|+  +...+++++++|+++|++..   +++||+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            4899999999999999998884 66799999999999999999999986  35578999999999999763   459999


Q ss_pred             EEEcCCCCCCCCcccCCcc-----HHHHHHHHcccCCCCcEEEEecCCC
Q 025534          179 IIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~-----~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ||+|||.-.. ++. ..+.     .+.... +.++|+|||++++-+++.
T Consensus       294 IilDPPsF~r-~k~-~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         294 IILDPPSFAR-SKK-QEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             EEECCccccc-Ccc-cchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence            9999985332 221 1221     244555 479999999999877655

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.51  E-value=3.9e-13  Score=110.98  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|.++..++...+..+|++||+|+.+++.++++....+    .++++++.+|+.++.  ..++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence            4789999999999999888765555789999999999999998876442    246999999998852  3478999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +...    .      -.++++. +.+.|+|||++++..++
T Consensus       116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcCC
Confidence            8521    1      1367787 69999999999987643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.50  E-value=2e-13  Score=124.39  Aligned_cols=130  Identities=17%  Similarity=0.209  Sum_probs=93.6

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ..+|||||||+|.++..+++..+..+|++||+|+.+++.|++++..+... ...+++++.+|+...+  .+++||+|++|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence            46999999999999999988755679999999999999999998755311 1247899999987654  23589999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      ||.+........ ...++++. ++++|+|||.+.+-...     ..    .....|++.|+.+.
T Consensus       306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~l----~y~~~L~~~fg~~~  358 (378)
T PRK15001        306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----HL----DYFHKLKKIFGNCT  358 (378)
T ss_pred             cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----Cc----CHHHHHHHHcCCce
Confidence            885442111111 23578888 79999999998875421     11    23345556666553

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.49  E-value=1.1e-13  Score=110.68  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=83.3

Q ss_pred             CCCeEEEEecCchHHHHHHH-hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I  179 (251)
                      +..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+...+    -++++++++|..+ +... .++||+|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~I   77 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDII   77 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeEE
Confidence            56899999999999999999 44455799999999999999999876442    3489999999999 5431 2789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++.+.++.  +    ....+++. +.+.|+++|++++..
T Consensus        78 ~~~~~l~~~--~----~~~~~l~~-~~~~lk~~G~~i~~~  110 (152)
T PF13847_consen   78 ISNGVLHHF--P----DPEKVLKN-IIRLLKPGGILIISD  110 (152)
T ss_dssp             EEESTGGGT--S----HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcCchhhc--c----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            999653221  1    12368888 799999999998765

...

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=2.6e-13  Score=118.58  Aligned_cols=126  Identities=16%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ..+|||+|||.|.++..+++..+..++|.||+|...++.||+++..|+    -++..++.+|..+-+.   ++||+|++|
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~s~~~~~v~---~kfd~IisN  231 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASNLYEPVE---GKFDLIISN  231 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEEeccccccc---ccccEEEeC
Confidence            459999999999999999998777899999999999999999998764    2333788888766543   499999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      ||-+..... .+-...++++. .+++|++||.|.+-...   .      ......|++.|.+|.
T Consensus       232 PPfh~G~~v-~~~~~~~~i~~-A~~~L~~gGeL~iVan~---~------l~y~~~L~~~Fg~v~  284 (300)
T COG2813         232 PPFHAGKAV-VHSLAQEIIAA-AARHLKPGGELWIVANR---H------LPYEKKLKELFGNVE  284 (300)
T ss_pred             CCccCCcch-hHHHHHHHHHH-HHHhhccCCEEEEEEcC---C------CChHHHHHHhcCCEE
Confidence            986642111 12234589999 79999999977654321   1      133457778888664

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.47  E-value=2e-12  Score=114.02  Aligned_cols=113  Identities=20%  Similarity=0.256  Sum_probs=85.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|++++..++   ...+++++.+|+.+.+.  .++||+|++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEE
Confidence            4578999999999999999987555699999999999999999987553   23589999999877652  357999999


Q ss_pred             cCCCCCCC-----------CcccCC--------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEG-----------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~-----------~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |||.-...           .|...+        +...+++. +.++|+|||.+++..+
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~-a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE-AADHLNENGVLVVEVG  252 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            98731100           111111        12456777 6899999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.46  E-value=4.8e-13  Score=102.34  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|||+|||+|..+..+++..+..+|+++|+++.+++.+++++...+    .++++++.+|+...+....++||+|+
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence            34579999999999999999987544799999999999999999876442    35789999997754433346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++....       .  ..++++. +.+.|+|||.++++.
T Consensus        94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA  122 (124)
T ss_pred             ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence            974311       1  2478898 799999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.7e-12  Score=114.13  Aligned_cols=141  Identities=22%  Similarity=0.325  Sum_probs=95.7

Q ss_pred             eeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc
Q 025534           69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (251)
Q Consensus        69 g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (251)
                      |..+.++-.+-...++.....+.+.  ..... .+.+|||||||+|.++..+++..+..+|+++|+|+.++++|+++...
T Consensus        80 gl~~~v~~~vliPr~dTe~Lve~~l--~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          80 GLRFKVDEGVLIPRPDTELLVEAAL--ALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             ceeeeeCCCceecCCchHHHHHHHH--Hhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence            4555566555454455433333322  11111 12279999999999999999987667999999999999999999886


Q ss_pred             ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------cHHHHHHHHcccC
Q 025534          149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRL  209 (251)
Q Consensus       149 ~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~----------~~p~~~l~--------~~ef~~~~~~~~L  209 (251)
                      ++   . .++.++.+|.++-+   .++||+|++|||. |..          ..|...|+        ...|... +.+.|
T Consensus       157 ~~---l-~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~-a~~~l  228 (280)
T COG2890         157 NG---L-VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE-APDIL  228 (280)
T ss_pred             cC---C-ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh-hHHHc
Confidence            64   1 56777777766554   3599999999983 221          11211111        2456666 68999


Q ss_pred             CCCcEEEEecC
Q 025534          210 NPEGIFVTQAG  220 (251)
Q Consensus       210 ~pgG~l~~~~~  220 (251)
                      +|||.+++..+
T Consensus       229 ~~~g~l~le~g  239 (280)
T COG2890         229 KPGGVLILEIG  239 (280)
T ss_pred             CCCcEEEEEEC
Confidence            99999999875

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=110.19  Aligned_cols=104  Identities=26%  Similarity=0.357  Sum_probs=88.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~fD  177 (251)
                      ..+++||+||++.|..+.+++.. +...+++.+|+|++.++.|++++...+   -+++++++. +|+.+.+.. ..++||
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCcc
Confidence            47899999999999999999885 436799999999999999999997554   457799999 699999975 468999


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +||+|+...         ..++||+. +.++|+|||++++
T Consensus       135 liFIDadK~---------~yp~~le~-~~~lLr~GGliv~  164 (219)
T COG4122         135 LVFIDADKA---------DYPEYLER-ALPLLRPGGLIVA  164 (219)
T ss_pred             EEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEE
Confidence            999997422         23589999 6899999999986

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.45  E-value=2.1e-12  Score=117.48  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      ....+||||||+|..+..+++..+...+++||+++.+++.|.+.....+    -++++++.+|++.++.. .++.+|.|+
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I~  197 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKIF  197 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence            4568999999999999999886556799999999999999988876442    35799999999876543 357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +..++||...+...+...+|++. ++++|+|||.+.+.+.      ..+.+..+++.+.+.
T Consensus       198 lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~  251 (390)
T PRK14121        198 VHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL  251 (390)
T ss_pred             EeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence            99999985333335667899999 7999999999998763      345566666665543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.45  E-value=4.8e-12  Score=105.97  Aligned_cols=146  Identities=16%  Similarity=0.119  Sum_probs=96.8

Q ss_pred             cEEEEEecCceeEEEE-cCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChH
Q 025534           59 DIALLDTKPFGKALVI-DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus        59 ~i~v~~~~~~g~~l~l-dg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~  137 (251)
                      .++|+..+..|+.|.. ++.. . .+....-.+.+.. .+.......+|||+|||+|.++.+++... ..+|++||+|++
T Consensus        12 ~mrIi~g~~~g~~l~~~~~~~-~-Rp~~d~v~e~l~~-~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~   87 (199)
T PRK10909         12 QIRIIGGQWRGRKLPVPDSPG-L-RPTTDRVRETLFN-WLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA   87 (199)
T ss_pred             CEEEEeeccCCCEeCCCCCCC-c-CcCCHHHHHHHHH-HHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence            4778877766777643 1110 1 1111111122221 11111345799999999999999766643 479999999999


Q ss_pred             HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc--ccCCCCcEE
Q 025534          138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIF  215 (251)
Q Consensus       138 vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~--~~L~pgG~l  215 (251)
                      +++.+++++..++    -.+++++.+|+.+++....++||+|++|||...  +    + ..+.++. +.  ..|+|+|++
T Consensus        88 a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv  155 (199)
T PRK10909         88 VAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALI  155 (199)
T ss_pred             HHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEE
Confidence            9999999987653    247999999999988544457999999998432  1    1 2334444 33  458999999


Q ss_pred             EEecC
Q 025534          216 VTQAG  220 (251)
Q Consensus       216 ~~~~~  220 (251)
                      ++...
T Consensus       156 ~ve~~  160 (199)
T PRK10909        156 YVESE  160 (199)
T ss_pred             EEEec
Confidence            98763

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.45  E-value=5.2e-13  Score=114.60  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  174 (251)
                      .++++||+||||+|..+..+++. ++..+|+++|+|++.++.|++++...+   -..+++++.+|+.+.+...     .+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence            36789999999999988888764 445799999999999999999997654   2468999999999987541     36


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +||+|++|...+.         -.++++. +.+.|+|||++++
T Consensus       144 ~fD~VfiDa~k~~---------y~~~~~~-~~~ll~~GG~ii~  176 (234)
T PLN02781        144 EFDFAFVDADKPN---------YVHFHEQ-LLKLVKVGGIIAF  176 (234)
T ss_pred             CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCeEEEE
Confidence            8999999975321         1367888 6899999999886

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.45  E-value=3e-12  Score=117.29  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++..+|||+|||+|.++..+++..+..+|+++|+|+++++.|+++...++     .+++++.+|..+......++||+|+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIV  324 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIV  324 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEE
Confidence            34569999999999999988875455799999999999999999986542     3799999998664211235799999


Q ss_pred             EcCCC-CCC----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~-~~~----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|||. +..          ..|...|+        -+.+++. +.++|+|||.+++..+
T Consensus       325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~-a~~~LkpgG~lilEiG  382 (423)
T PRK14966        325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQG-APDRLAEGGFLLLEHG  382 (423)
T ss_pred             ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHH-HHHhcCCCcEEEEEEC
Confidence            99973 110          01111122        1244555 4689999999988764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.44  E-value=6.8e-12  Score=104.89  Aligned_cols=122  Identities=19%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++..++   ...+++++.+|+.+++....++||.|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhcCCCCCEE
Confidence            45689999999999999988774 334689999999999999999876542   13579999999988876555789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++....   .      -.++++. +.++|+|||.+++...      ..+.+..+...|++.
T Consensus       116 ~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~  161 (198)
T PRK00377        116 FIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENI  161 (198)
T ss_pred             EECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHc
Confidence            9964211   1      2467888 7899999999987542      345567777777654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=113.12  Aligned_cols=106  Identities=22%  Similarity=0.351  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+.+|||+|||+|.++..+++. + .+|+++|+++++++.|+++....+   ..++++++++|+.+......++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~-g-~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL-G-HQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            45689999999999999999986 3 589999999999999999876432   246899999999886434457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-++...|      ..+++. +.+.|||||++++.
T Consensus       118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~  148 (255)
T PRK11036        118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM  148 (255)
T ss_pred             ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence            87542221122      367888 79999999999764

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.43  E-value=2.4e-12  Score=110.12  Aligned_cols=107  Identities=19%  Similarity=0.209  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||||-++..+++..+..+|+++|+++.|++.+++.....+    ...++++.+||.+ |.-.+++||+|.
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt  124 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT  124 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence            36899999999999999999997666899999999999999999876321    1239999999876 456789999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.-.-.+...      -...+++ +.|+|||||++++..
T Consensus       125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle  156 (238)
T COG2226         125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE  156 (238)
T ss_pred             eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence            9754322111      2467888 799999999887654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=5e-12  Score=112.67  Aligned_cols=111  Identities=19%  Similarity=0.232  Sum_probs=85.2

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      .+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++++|+.+.+.  .++||+|++||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEECC
Confidence            78999999999999999886555799999999999999999987543   23579999999887653  35799999998


Q ss_pred             CCCCC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534          184 ADPIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       184 ~~~~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |.-..           ..|...++        ...+++. +.++|+|||.+++..+
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~-a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE-APDYLTEDGVLVVEVG  264 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            73110           01211111        2466777 6899999999999865

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.43  E-value=8.1e-13  Score=109.75  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=90.1

Q ss_pred             HHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534           90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (251)
Q Consensus        90 e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l  169 (251)
                      +.+.+++.   ..+.+|.|||||.|..+..|+++.+.+.|+++|.|++|++.|++.+         |++++..+|.++| 
T Consensus        21 dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w-   87 (257)
T COG4106          21 DLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW-   87 (257)
T ss_pred             HHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc-
Confidence            45555554   3578999999999999999999878899999999999999998763         6789999999998 


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +.....|+|+.|+.-+|.  | .   -.+.+.. +...|+|||++++|+
T Consensus        88 -~p~~~~dllfaNAvlqWl--p-d---H~~ll~r-L~~~L~Pgg~LAVQm  129 (257)
T COG4106          88 -KPEQPTDLLFANAVLQWL--P-D---HPELLPR-LVSQLAPGGVLAVQM  129 (257)
T ss_pred             -CCCCccchhhhhhhhhhc--c-c---cHHHHHH-HHHhhCCCceEEEEC
Confidence             345789999999876662  2 1   1366777 688999999999997

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.42  E-value=6.8e-12  Score=110.65  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=84.3

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      .+|||+|||+|.++..+++..+..+|+++|+++++++.|+++...++   ...+++++.+|..+.+.  .++||+|++||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNP  190 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNP  190 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECC
Confidence            68999999999999999987555799999999999999999976543   23469999999877542  24899999998


Q ss_pred             CCCCC-----------CCcccCC--------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          184 ADPIE-----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       184 ~~~~~-----------~~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |.-..           ..|...|        +.+.+++. +.+.|+|||.+++..+.
T Consensus       191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~-a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL-APDYLKPNGFLVCEIGN  246 (284)
T ss_pred             CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc
Confidence            73111           0111111        12456676 67899999999998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02476 O-methyltransferase

Probab=99.42  E-value=1.8e-12  Score=113.38  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  174 (251)
                      .++++||+||+++|..+.++++. ++..+|+.+|.|++..+.|++++...+   ..++++++.+|+.+.+.+.     .+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~~~~  193 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNGEGS  193 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence            46899999999999999998874 334689999999999999999998654   2469999999999988642     36


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++|+....         ..++|+. +.++|+|||++++.
T Consensus       194 ~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D  227 (278)
T PLN02476        194 SYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence            8999999975321         2478888 68999999998864

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.42  E-value=4.5e-12  Score=104.92  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.+++++..++    -++++++.+|+...+   .++||+|+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v~  102 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAIF  102 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEEE
Confidence            46689999999999999999886555799999999999999999876542    247999999975433   36899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++....         ...++++. +.+.|+|||.++++.
T Consensus       103 ~~~~~~---------~~~~~l~~-~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        103 IGGSGG---------NLTAIIDW-SLAHLHPGGRLVLTF  131 (187)
T ss_pred             ECCCcc---------CHHHHHHH-HHHhcCCCeEEEEEE
Confidence            974311         12467888 799999999998864

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.41  E-value=1.5e-12  Score=112.87  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++.           +++++.+|+.++.  ..++||+|+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~   94 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV   94 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence            456899999999999999998864446899999999999999762           4788999987763  346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++..-++...      ...+++. ++++|||||.+++..
T Consensus        95 ~~~~l~~~~d------~~~~l~~-~~~~LkpgG~l~~~~  126 (255)
T PRK14103         95 SNAALQWVPE------HADLLVR-WVDELAPGSWIAVQV  126 (255)
T ss_pred             EehhhhhCCC------HHHHHHH-HHHhCCCCcEEEEEc
Confidence            9876444211      2578888 799999999998864

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.41  E-value=8.6e-13  Score=110.90  Aligned_cols=105  Identities=22%  Similarity=0.331  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  174 (251)
                      .++++||+||++.|..+.++++. ++..+|+.+|+|++..+.|++++...+   ...+++++.+|+.+++.+.     .+
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence            36899999999999999999975 445799999999999999999997543   2469999999999988641     24


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++|....         .-.++|+. +.++|+|||++++.
T Consensus       121 ~fD~VFiDa~K~---------~y~~y~~~-~~~ll~~ggvii~D  154 (205)
T PF01596_consen  121 QFDFVFIDADKR---------NYLEYFEK-ALPLLRPGGVIIAD  154 (205)
T ss_dssp             SEEEEEEESTGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ceeEEEEccccc---------chhhHHHH-HhhhccCCeEEEEc
Confidence            899999997421         12478888 68999999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.41  E-value=8.6e-12  Score=102.02  Aligned_cols=120  Identities=24%  Similarity=0.224  Sum_probs=98.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+++|||||+|+++.+++...+..+|+++|-|+++++..+++....+    -++++++.+|+-+.+.+.+ ++|.|+
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~~-~~daiF  107 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDLP-SPDAIF  107 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCCC-CCCEEE
Confidence            35578999999999999999976667899999999999999999976442    4799999999999997654 899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      +.-..          --.+.++. +..+|+|||++++|..      ..+....+++.|++.-
T Consensus       108 IGGg~----------~i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~g  152 (187)
T COG2242         108 IGGGG----------NIEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQLG  152 (187)
T ss_pred             ECCCC----------CHHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHcC
Confidence            98431          12477888 6899999999999963      3566777778887653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.41  E-value=7.8e-12  Score=108.41  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~  181 (251)
                      +.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..+       +++++.+|..+++.. ..++||+|++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAA  159 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEE
Confidence            46899999999999999887644468999999999999999998654       247899999887643 2357999999


Q ss_pred             cCCC-CCC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          182 DLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       182 D~~~-~~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      |+|. +..           ..|...+.        ..++++. +.++|+|||.+++..+.       +...++...|++
T Consensus       160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~-------~~~~~v~~~l~~  230 (251)
T TIGR03704       160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSE-------RQAPLAVEAFAR  230 (251)
T ss_pred             CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc-------chHHHHHHHHHH
Confidence            9973 210           01111111        2466776 68999999999987532       123455555654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.40  E-value=3.3e-12  Score=125.40  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=89.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++  +...+++++.+|++++++..+++||+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            5789999999999999999985 55689999999999999999998775  22258999999999998655678999999


Q ss_pred             cCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCC
Q 025534          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       182 D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |||.-.........+     -.+++.. +.++|+|||++++.+++
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence            997422100000111     1346666 57899999999886654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.40  E-value=1.2e-11  Score=106.41  Aligned_cols=113  Identities=18%  Similarity=0.289  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...+    .++++++.+|+.+.+  ..++||+|+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi  159 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV  159 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence            34569999999999999999986555699999999999999999876542    247999999987754  247899999


Q ss_pred             EcCCCCCCCC------------cccCC--------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGG------------PCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~------------p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|+|......            |...+        .-..+++. +.+.|+|||.+++..+
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG  218 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence            9987321100            00000        01357777 6899999999998753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.39  E-value=2.2e-12  Score=111.51  Aligned_cols=108  Identities=17%  Similarity=0.289  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHh--cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ++..+|||||||+|..+..+++  ..+..++++||+++.|++.|++++...+   ...+++++.+|+.+..   ...+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence            4668999999999999888876  2345799999999999999999876432   2358999999987642   246999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++...-+.. .+   -....+++. +++.|+|||.+++..
T Consensus       129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~e  164 (247)
T PRK15451        129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLSE  164 (247)
T ss_pred             EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            9987543221 11   112468898 799999999998753

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.39  E-value=3.2e-12  Score=115.42  Aligned_cols=107  Identities=17%  Similarity=0.195  Sum_probs=82.8

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++     -..+++.+|+...+   .++||+|++|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEEC
Confidence            468999999999999999987555689999999999999999887653     23578888876543   4789999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.+..... ..-...++++. +.++|+|||.+.+-.
T Consensus       269 PPFH~g~~~-~~~~~~~~i~~-a~~~LkpgG~L~iVa  303 (342)
T PRK09489        269 PPFHDGIQT-SLDAAQTLIRG-AVRHLNSGGELRIVA  303 (342)
T ss_pred             CCccCCccc-cHHHHHHHHHH-HHHhcCcCCEEEEEE
Confidence            875541111 01123688998 799999999887654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5e-12  Score=107.76  Aligned_cols=122  Identities=23%  Similarity=0.321  Sum_probs=99.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||+.|.|+|.++..|++. .+..+|+.+|+.++..+.|++++...+   -..++++..+|..+....  +.||+|
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~---l~d~v~~~~~Dv~~~~~~--~~vDav  167 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG---LGDRVTLKLGDVREGIDE--EDVDAV  167 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc---cccceEEEeccccccccc--cccCEE
Confidence            46789999999999999999974 445799999999999999999987542   234599999999998743  499999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCce
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCG  245 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v  245 (251)
                      ++|.++||           ++++. +++.|+|||.+++.+  |+    -+..+.....|++. |-+.
T Consensus       168 ~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P~----veQv~kt~~~l~~~g~~~i  216 (256)
T COG2519         168 FLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--PT----VEQVEKTVEALRERGFVDI  216 (256)
T ss_pred             EEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--CC----HHHHHHHHHHHHhcCccch
Confidence            99999887           56778 799999999999875  32    45677888888877 5443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.39  E-value=8.2e-12  Score=106.42  Aligned_cols=107  Identities=13%  Similarity=0.070  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.+++++...    ..++++++.+|+.++. ...++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V  118 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV  118 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence            35689999999999999998875 34469999999999999999887533    2358999999987742 235789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++..-++.  +    ...++++. +.++|+|||.+++..
T Consensus       119 ~~~~~l~~~--~----~~~~~l~~-~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       119 TIGFGLRNV--P----DYMQVLRE-MYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEecccccC--C----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence            987543321  1    12467888 699999999988654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.39  E-value=3.4e-12  Score=110.65  Aligned_cols=101  Identities=17%  Similarity=0.274  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++         ++++++.+|+.++.  ..++||+|+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~   98 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF   98 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence            4568999999999999999987644579999999999999999863         46889999988764  346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++..-++...      ...+++. +.++|+|||.+++..
T Consensus        99 ~~~~l~~~~d------~~~~l~~-~~~~LkpgG~~~~~~  130 (258)
T PRK01683         99 ANASLQWLPD------HLELFPR-LVSLLAPGGVLAVQM  130 (258)
T ss_pred             EccChhhCCC------HHHHHHH-HHHhcCCCcEEEEEC
Confidence            9876544211      2478898 799999999999875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.38  E-value=1.2e-11  Score=117.25  Aligned_cols=112  Identities=22%  Similarity=0.326  Sum_probs=83.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++.+|..+.+.  .++||+|++|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEEC
Confidence            468999999999999988875445799999999999999999976543   23589999999876552  3689999999


Q ss_pred             CCCCC-C-----------CCcccCCc----c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPI-E-----------GGPCYKLY----T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~-~-----------~~p~~~l~----~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|.-. .           ..|...|+    .    ..+++. +.++|+|||.+++..+
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig  270 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG  270 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence            87311 0           01211222    1    234555 5789999999998764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.38  E-value=1.3e-12  Score=112.00  Aligned_cols=106  Identities=22%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..++++ .+..+|+++|+++.|++.|++.....+    ..+++++++|+.+. ...+++||+|
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~v  120 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDAV  120 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeEE
Confidence            45789999999999999999886 334699999999999999999876432    24899999999874 3456899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++...-..  -+    .-...+++ +.|+|||||.+++-
T Consensus       121 ~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il  152 (233)
T PF01209_consen  121 TCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL  152 (233)
T ss_dssp             EEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence            98653221  11    12468888 79999999988764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.38  E-value=7.6e-13  Score=96.14  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=73.5

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~  186 (251)
                      ||+|||+|..+..++++ +..+++++|+++++++.+++...       ..+++++.+|+.++ .-.++.||+|++...-+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence            89999999999999998 45799999999999999999764       24567999998776 44568999999986532


Q ss_pred             CCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +.      -.-..++++ ++|.|||||++++
T Consensus        72 ~~------~~~~~~l~e-~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HL------EDPEAALRE-IYRVLKPGGRLVI   95 (95)
T ss_dssp             GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred             ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence            21      113578898 7999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.38  E-value=3.9e-12  Score=111.73  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      .+.++||++-|-+|+++..+++. ++.+|+.||.|..+++++++++.+|+  ++..+++++.+|++++++.  ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            35789999999999999998874 67799999999999999999999886  3446899999999999864  3579999


Q ss_pred             EEEcCCCCCCCCcccCCc--cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534          179 IIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~--~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~  235 (251)
                      ||+|||.-.. +. ..+.  -.+.... +.++|+|||.+++-++++.  ...+.+.+++
T Consensus       199 IIlDPPsF~k-~~-~~~~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~~~  252 (286)
T PF10672_consen  199 IILDPPSFAK-SK-FDLERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLEAV  252 (286)
T ss_dssp             EEE--SSEES-ST-CEHHHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHHHH
T ss_pred             EEECCCCCCC-CH-HHHHHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHHHH
Confidence            9999984321 11 1110  1235555 4789999999988777663  3444444433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=2.5e-11  Score=106.01  Aligned_cols=113  Identities=20%  Similarity=0.333  Sum_probs=84.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...    ...+++++.+|..+.+.  .++||+|+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv  180 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV  180 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence            3567899999999999999988755579999999999999999987621    24689999999855432  46899999


Q ss_pred             EcCCCCCC------------CCcccCCcc--------HHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIE------------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~------------~~p~~~l~~--------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|+|....            ..|...++.        ..+++. +.+.|+|||.+++..+
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIG  239 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence            99873110            011111211        456666 5799999999998764

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.38  E-value=1.8e-11  Score=100.58  Aligned_cols=148  Identities=20%  Similarity=0.243  Sum_probs=103.5

Q ss_pred             EEEEEecCceeEE-EEcCccccccccchhHHHHHHHhHhhc-CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChH
Q 025534           60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus        60 i~v~~~~~~g~~l-~ldg~~q~~~~~~~~y~e~l~~~~~~~-~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~  137 (251)
                      ++|+..+..||.| ..+|.  .+.|....-.|.+.. .+.. .-.+.++||+-+|+|+++.+++.+ ++.+++.||.|.+
T Consensus         2 mRIi~G~~kgr~L~~p~~~--~~RPT~drVREalFN-il~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~   77 (187)
T COG0742           2 MRIIGGKYKGRKLKTPDGP--GTRPTTDRVREALFN-ILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK   77 (187)
T ss_pred             eEEEeccccCCcccCCCCC--CcCCCchHHHHHHHH-hccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence            4566666667766 34441  111222233455532 2222 246799999999999999999997 5789999999999


Q ss_pred             HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc--eeEEEEcCCCCCCCCcccCCc--cHHHHHHHHcccCCCCc
Q 025534          138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG  213 (251)
Q Consensus       138 vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~--fD~Ii~D~~~~~~~~p~~~l~--~~ef~~~~~~~~L~pgG  213 (251)
                      ++...+++....+   ...+.+++..|+..++++...+  ||+|++|||...  +    +.  ...+....-...|+|+|
T Consensus        78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~--~----l~~~~~~~~~~~~~~~L~~~~  148 (187)
T COG0742          78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK--G----LLDKELALLLLEENGWLKPGA  148 (187)
T ss_pred             HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc--c----hhhHHHHHHHHHhcCCcCCCc
Confidence            9999999987543   2478999999999998776555  999999998653  1    22  12222210258899999


Q ss_pred             EEEEecC
Q 025534          214 IFVTQAG  220 (251)
Q Consensus       214 ~l~~~~~  220 (251)
                      .+++...
T Consensus       149 ~iv~E~~  155 (187)
T COG0742         149 LIVVEHD  155 (187)
T ss_pred             EEEEEeC
Confidence            9999864

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.37  E-value=1.8e-11  Score=102.11  Aligned_cols=104  Identities=21%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ....+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++...+    .++++++.+|+.+.+......+|.|+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence            35579999999999999998875444799999999999999999886542    24799999999775543334578888


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++..     .+     -.++++. +.++|+|||.+++..
T Consensus       115 ~~~~-----~~-----~~~~l~~-~~~~LkpgG~li~~~  142 (196)
T PRK07402        115 IEGG-----RP-----IKEILQA-VWQYLKPGGRLVATA  142 (196)
T ss_pred             EECC-----cC-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence            7642     11     2477888 789999999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.36  E-value=1.4e-11  Score=101.19  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++..+++...  +|+++|+|+.+++.+++++..++     .+++++.+|..+..   .++||+|+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi   87 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL   87 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence            3567899999999999999988642  89999999999999999987542     36899999976643   35899999


Q ss_pred             EcCCCCCCCCcc---------------cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~---------------~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++++......+.               ......++++. +.++|+|||.+++..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQ  140 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEE
Confidence            998742211100               00013568888 799999999988764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.36  E-value=3e-12  Score=108.33  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+.+|||+|||+|.++..+++. + ++|+++|++++.|+.|+.+...++     -.++.......+.... .++||+|+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence            36789999999999999999997 4 799999999999999999976543     2366777777776543 48999999


Q ss_pred             EcCCCCCCCCcccCCcc-HHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYT-KSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~-~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +---       .+|+-+ ..|.+. +.+++||||++++.+
T Consensus       130 cmEV-------lEHv~dp~~~~~~-c~~lvkP~G~lf~ST  161 (243)
T COG2227         130 CMEV-------LEHVPDPESFLRA-CAKLVKPGGILFLST  161 (243)
T ss_pred             EhhH-------HHccCCHHHHHHH-HHHHcCCCcEEEEec
Confidence            8632       122222 358888 599999999998754

>PLN02244 tocopherol O-methyltransferase

Probab=99.36  E-value=4.1e-12  Score=114.77  Aligned_cols=107  Identities=15%  Similarity=0.203  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|++||+++.+++.+++.....+   ..++++++.+|+.+. ...+++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence            3568999999999999999988653 699999999999999998765432   236799999998764 23457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....+.  .+    ....++++ +.++|||||.+++..
T Consensus       192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~~  223 (340)
T PLN02244        192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIVT  223 (340)
T ss_pred             ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8643222  11    12478898 799999999988753

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=6.2e-12  Score=109.62  Aligned_cols=109  Identities=14%  Similarity=0.026  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. ++..+|++||++++|++.|++....... ...++++++++|+.+. ...+++||+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V  149 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI  149 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence            45679999999999999988875 3346999999999999999876542110 0235899999998764 3345789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++...-++...      -.+++++ +.++|||||.+++-
T Consensus       150 ~~~~~l~~~~d------~~~~l~e-i~rvLkpGG~l~i~  181 (261)
T PLN02233        150 TMGYGLRNVVD------RLKAMQE-MYRVLKPGSRVSIL  181 (261)
T ss_pred             EEecccccCCC------HHHHHHH-HHHHcCcCcEEEEE
Confidence            98654332111      2478898 79999999998764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.34  E-value=4.2e-12  Score=111.28  Aligned_cols=105  Identities=20%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||.|+++..+++..+ .+|++|.+|++..+.+++.+...+   ...++++...|.+++    +.+||.|+
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~Iv  132 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRIV  132 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEEE
Confidence            4678999999999999999999755 599999999999999999876443   346899999997764    34999999


Q ss_pred             EcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-- +.+.  ++   -.-..||+. +.+.|+|||+++++.
T Consensus       133 Si~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred             EEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            763 2322  21   123689999 799999999999876

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.34  E-value=5.3e-12  Score=113.00  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++. + .+|++||+++++++.|++++....   ...+++++++|+.++. ..+++||+|++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-g-~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-G-ATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence            3468999999999999988874 3 689999999999999998865432   2357999999987753 33578999998


Q ss_pred             cCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ... .+.. .|      .+|++. ++++|||||.+++..
T Consensus       205 ~~vLeHv~-d~------~~~L~~-l~r~LkPGG~liist  235 (322)
T PLN02396        205 LEVIEHVA-NP------AEFCKS-LSALTIPNGATVLST  235 (322)
T ss_pred             hhHHHhcC-CH------HHHHHH-HHHHcCCCcEEEEEE
Confidence            643 2221 22      478898 799999999998765

>PRK14967 putative methyltransferase; Provisional

Probab=99.34  E-value=1.7e-11  Score=104.30  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++..++     .+++++.+|..+.+.  .++||+|++
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi~  107 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVVS  107 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEEE
Confidence            4579999999999999998886 34599999999999999999876542     358899999877643  468999999


Q ss_pred             cCCCCCCCC-------cc--------cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGG-------PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~-------p~--------~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++......       +.        .......+++. +.++|+|||++++..
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLVQ  159 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            976321100       00        00012457777 689999999988743

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.32  E-value=1.2e-11  Score=106.77  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------C
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~  173 (251)
                      .++++||+||++.|..+.++++. ++..+|+.+|+|++..+.|+++|...+   ...+++++.+|+.+.+.+.      .
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccccC
Confidence            46789999999999999988874 445799999999999999999997543   2479999999999998652      2


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++||+|++|....         ...++|+. +.++|+|||++++.
T Consensus       155 ~~fD~iFiDadK~---------~Y~~y~~~-~l~ll~~GGviv~D  189 (247)
T PLN02589        155 GTFDFIFVDADKD---------NYINYHKR-LIDLVKVGGVIGYD  189 (247)
T ss_pred             CcccEEEecCCHH---------HhHHHHHH-HHHhcCCCeEEEEc
Confidence            6899999996421         12478888 58999999999863

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.32  E-value=8.4e-12  Score=104.33  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++.....+    ..+++++..|..++-  .+++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~-g-~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~~  101 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN-G-FDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFILS  101 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEEE
Confidence            5689999999999999999986 3 599999999999999998776432    246889999987642  2467999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ...-++. .+   -....+++. +++.|+|||.+++
T Consensus       102 ~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~  132 (197)
T PRK11207        102 TVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI  132 (197)
T ss_pred             ecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence            7543221 11   113578888 7999999998543

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.32  E-value=2.1e-12  Score=96.22  Aligned_cols=96  Identities=24%  Similarity=0.428  Sum_probs=71.0

Q ss_pred             EEEEecCchHHHHHHHhcC---CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      |||+|||+|..+..+++..   +..++++||+|+++++.+++++...     .++++++++|+.++ ....++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence            7999999999999998763   2269999999999999999987642     24899999999885 4456799999993


Q ss_pred             -C-CCCCCCCcccCCccHHHHHHHHcccCCCCc
Q 025534          183 -L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (251)
Q Consensus       183 -~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG  213 (251)
                       . ..+.  .+   -....++++ +.++|+|||
T Consensus        75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHL--SP---EELEALLRR-IARLLRPGG  101 (101)
T ss_dssp             TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred             CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence             3 2221  11   113578898 799999998

>PLN03075 nicotianamine synthase; Provisional

Probab=99.32  E-value=2e-11  Score=107.43  Aligned_cols=108  Identities=14%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             CCCeEEEEecCchHH-HHHHH-hcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGST-AREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+++|++||||.|.+ +..++ ++.+..+++++|+|+++++.||+++.. .+   -.++++|+.+|+.+... ..++||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcCE
Confidence            789999999997744 33333 355567999999999999999999853 22   25789999999988532 2368999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++++...+...     .-.+.++. +.++|+|||++++.+
T Consensus       199 VF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence            999954333111     12578898 799999999999876

>PLN02672 methionine S-methyltransferase

Probab=99.32  E-value=6.5e-11  Score=119.39  Aligned_cols=118  Identities=21%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC------------CCCCCeEEEEcchHHHHh
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA------------FSDPRLELVINDARAELE  170 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~------------~~~~rv~~~~~D~~~~l~  170 (251)
                      +.+|||||||+|.++..+++..+..+|+++|+|+++++.|+++...++..            ....|++++++|..+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999988655579999999999999999998764210            012479999999988774


Q ss_pred             cCCCceeEEEEcCCC-CCC-----------CC---------cccCCcc-----------HHHHHHHHcccCCCCcEEEEe
Q 025534          171 SRKESYDVIIGDLAD-PIE-----------GG---------PCYKLYT-----------KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~-~~~-----------~~---------p~~~l~~-----------~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ....+||+|++|+|. +..           ..         |...|+.           +.+.+. ..++|+|||.++++
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lE  277 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFN  277 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEE
Confidence            333479999999982 100           01         1122322           345555 46899999999999


Q ss_pred             cCC
Q 025534          219 AGP  221 (251)
Q Consensus       219 ~~~  221 (251)
                      .+.
T Consensus       278 iG~  280 (1082)
T PLN02672        278 MGG  280 (1082)
T ss_pred             ECc
Confidence            863

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.32  E-value=8.1e-11  Score=104.02  Aligned_cols=121  Identities=21%  Similarity=0.267  Sum_probs=88.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++   ...++++..+|....   ..++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~~---~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQP---IEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecccccc---cCCCceEEE
Confidence            35689999999999999888876 45699999999999999999987654   235677777763222   246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCc
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~  244 (251)
                      ++....    +     ..+++.. +.+.|+|||.+++..     +. ......+.+.+++.|..
T Consensus       231 an~~~~----~-----l~~ll~~-~~~~LkpgG~li~sg-----i~-~~~~~~v~~~~~~~f~~  278 (288)
T TIGR00406       231 ANILAE----V-----IKELYPQ-FSRLVKPGGWLILSG-----IL-ETQAQSVCDAYEQGFTV  278 (288)
T ss_pred             EecCHH----H-----HHHHHHH-HHHHcCCCcEEEEEe-----Cc-HhHHHHHHHHHHccCce
Confidence            986421    1     1467888 799999999998753     11 23345666666665543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.31  E-value=1.5e-11  Score=101.67  Aligned_cols=109  Identities=20%  Similarity=0.326  Sum_probs=80.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      ..+.+|||+.+|+|+++.+++.+ ++.+|+.||.|+..++..++++...+   ...+++++..|+..++.+   ..++||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence            36789999999999999999986 57899999999999999999987442   234799999999998864   368999


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~~  220 (251)
                      +|++|||...  .    +.-.+.++. +  ...|+++|+++++..
T Consensus       117 iIflDPPY~~--~----~~~~~~l~~-l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  117 IIFLDPPYAK--G----LYYEELLEL-LAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEEE--STTS--C----HHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred             EEEECCCccc--c----hHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence            9999997533  1    112345555 3  389999999999874

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.31  E-value=1.4e-11  Score=104.19  Aligned_cols=102  Identities=22%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|..+..+++..+ ..+|++||+++++++.|++++...+    ..+++++.+|+.+... ...+||+|
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I  150 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWE-PLAPYDRI  150 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCc-ccCCCCEE
Confidence            4568999999999999998888643 3479999999999999999987542    3579999999877543 23689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +++...+.  .          .+. +.+.|+|||++++..+
T Consensus       151 i~~~~~~~--~----------~~~-~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       151 YVTAAGPK--I----------PEA-LIDQLKEGGILVMPVG  178 (215)
T ss_pred             EEcCCccc--c----------cHH-HHHhcCcCcEEEEEEc
Confidence            99865322  1          133 5678999999988654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=1.4e-11  Score=103.56  Aligned_cols=101  Identities=20%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +..+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+   ...+++++.+|+.+.+.. ..+||+|+
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~Ii  147 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAII  147 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEEE
Confidence            45799999999999998887753 23589999999999999999886442   124799999999876532 46899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...+.            +.+. +.+.|+|||++++..
T Consensus       148 ~~~~~~~------------~~~~-l~~~L~~gG~lvi~~  173 (205)
T PRK13944        148 VTAAAST------------IPSA-LVRQLKDGGVLVIPV  173 (205)
T ss_pred             EccCcch------------hhHH-HHHhcCcCcEEEEEE
Confidence            9865321            1234 577899999998754

>TIGR00740 methyltransferase, putative

Probab=99.30  E-value=5.4e-11  Score=102.17  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ++..+|||||||+|..+..++++  .+..+++++|+++.+++.|++++....   ...+++++.+|+.++-   .+.+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence            45678999999999999988874  234799999999999999999875322   2357999999987652   246999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++...-++. .+   -.-..+++. ++++|+|||.+++..
T Consensus       126 v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       126 VILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLSE  161 (239)
T ss_pred             EeeecchhhC-CH---HHHHHHHHH-HHHhcCCCeEEEEee
Confidence            8886543321 11   012478898 799999999998763

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.29  E-value=3.2e-11  Score=100.71  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=96.7

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEEEEc
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~D  182 (251)
                      -+||||||.|.....+++..+...+.+||+....+..+.+.....    .-+++.++++|+..++..  .+++.|-|.+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            799999999999998888656689999999999999988776543    347999999999998764  35799999999


Q ss_pred             CCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       183 ~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      -|+||....  ...+.+.+|+.. +.++|+|||.+.+.+.      ..+.+..+++.+.+.
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES  149 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence            999984322  257899999999 8999999999998763      356777778887774

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.29  E-value=3.4e-11  Score=103.76  Aligned_cols=128  Identities=19%  Similarity=0.234  Sum_probs=93.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHh-cCCCce
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELE-SRKESY  176 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~-~~~~~f  176 (251)
                      ..++.+||+-|.|+|+++..+++. .+..+|...|+.++-.+.|+++|...+   ...++++.+.|..+ -.. .....+
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~Dv~~~g~~~~~~~~~  114 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRDVCEEGFDEELESDF  114 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-GGCG--STT-TTSE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecceecccccccccCcc
Confidence            356799999999999999999974 445799999999999999999998654   35689999999863 222 224689


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccC-CCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCceeee
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGYNL  248 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L-~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~  248 (251)
                      |.|++|.++||.           .+.. +.+.| ++||++++.+  |+    .+...+....|++. |..+..+
T Consensus       115 DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P~----ieQv~~~~~~L~~~gf~~i~~~  170 (247)
T PF08704_consen  115 DAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--PC----IEQVQKTVEALREHGFTDIETV  170 (247)
T ss_dssp             EEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--SS----HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--CC----HHHHHHHHHHHHHCCCeeeEEE
Confidence            999999999883           2455 68889 8999999875  43    56677778888874 6554433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=1.1e-12  Score=97.17  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~  186 (251)
                      ||||||+|.++..+++..+..+++++|+|+.+++.+++++..... ....++++...|..+.  ...++||+|++...-+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence            799999999999999875668999999999999989888764320 0111333333333222  1225999999876533


Q ss_pred             CCCCcccCCccHHHHHHHHcccCCCCcEE
Q 025534          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIF  215 (251)
Q Consensus       187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l  215 (251)
                      +..      ...++++. +++.|+|||+|
T Consensus        78 ~l~------~~~~~l~~-~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLE------DIEAVLRN-IYRLLKPGGIL   99 (99)
T ss_dssp             --S-------HHHHHHH-HTTT-TSS-EE
T ss_pred             hhh------hHHHHHHH-HHHHcCCCCCC
Confidence            311      13588998 79999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=2.8e-11  Score=102.36  Aligned_cols=102  Identities=24%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++.. ...+|+++|+++++++.+++++...+    ..+++++.+|+..... ...+||+|
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I  149 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI  149 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence            456899999999999998888753 23599999999999999999887442    3579999999876542 24689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +++...+.            ..+. +.+.|+|||++++..+
T Consensus       150 ~~~~~~~~------------~~~~-l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        150 YVTAAGPD------------IPKP-LIEQLKDGGIMVIPVG  177 (212)
T ss_pred             EECCCccc------------chHH-HHHhhCCCcEEEEEEc
Confidence            99854221            1134 4678999999988654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.28  E-value=1.1e-11  Score=105.06  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=79.5

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      ++|||||||+|..+..+++..+..+|+++|+++++++.+++++...+   ..++++++..|..+..  ..++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence            47999999999999998886544689999999999999999876432   3468999999975431  246899999754


Q ss_pred             CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .-+.  .+    ....+++. ++++|+|||.+++..
T Consensus        76 ~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHH--IK----DKMDLFSN-ISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHh--CC----CHHHHHHH-HHHHcCCCCEEEEEE
Confidence            3221  11    12578999 799999999988754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.27  E-value=1.4e-10  Score=100.41  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+.+. +..+|+++|+|+.+++.|++++..++   ...++.+..+|.         +||+|+
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~~~---------~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQGDL---------KADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccCCC---------CcCEEE
Confidence            46789999999999999887775 34579999999999999999987653   123444444332         799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++....    +     ...+++. +.++|+|||.+++....      ......+.+.+++.
T Consensus       185 ani~~~----~-----~~~l~~~-~~~~LkpgG~lilsgi~------~~~~~~v~~~l~~~  229 (250)
T PRK00517        185 ANILAN----P-----LLELAPD-LARLLKPGGRLILSGIL------EEQADEVLEAYEEA  229 (250)
T ss_pred             EcCcHH----H-----HHHHHHH-HHHhcCCCcEEEEEECc------HhhHHHHHHHHHHC
Confidence            985421    1     1367777 78999999999986421      22344566666654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.27  E-value=4.4e-11  Score=103.36  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|.++..+.+. + .+++++|+++.+++.|+++..         ..+++.+|+... ...+++||+|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s  109 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER-G-SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS  109 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence            4679999999999999888775 3 689999999999999998632         346788998663 233568999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..-++...      ..+++.+ +.++|+|||.+++..
T Consensus       110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT  140 (251)
T ss_pred             CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence            876544212      2478888 799999999998764

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.27  E-value=5.5e-11  Score=98.86  Aligned_cols=107  Identities=20%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~  178 (251)
                      ...+|||++||+|.++.+++.+ +..+|++||+|+.+++.+++++..++   ...+++++.+|+.+++...   ...||+
T Consensus        49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCCCceE
Confidence            5689999999999999999997 45699999999999999999988664   2347999999999887532   235899


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~  219 (251)
                      |+.|||...  .    + ..+.++.+. ...|+++|++++..
T Consensus       125 v~~DPPy~~--~----~-~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       125 IYLDPPFFN--G----A-LQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             EEECcCCCC--C----c-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence            999997532  1    1 233444311 46899999999875

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=2.9e-11  Score=105.39  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++.+|||||||.|+++.+++++.+ .+|++|++|++..+.+++.+...+   ...+++++..|-+++    .++||-|
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~g---l~~~v~v~l~d~rd~----~e~fDrI  141 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARG---LEDNVEVRLQDYRDF----EEPFDRI  141 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcC---CCcccEEEecccccc----cccccee
Confidence            35679999999999999999999865 699999999999999999876443   235899999997765    3569999


Q ss_pred             EEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++-- +.+.  ++   -.-.+||+. +++.|+|||++++++
T Consensus       142 vSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~  176 (283)
T COG2230         142 VSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS  176 (283)
T ss_pred             eehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence            9853 4443  22   123589999 799999999999886

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.26  E-value=6.3e-12  Score=115.58  Aligned_cols=138  Identities=20%  Similarity=0.231  Sum_probs=112.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------CCc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------KES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~~  175 (251)
                      .+.++|++|.|+|++...+..+.+..++|+||+||++++.|++||.+..    +.|.+++..|+.+|++++      +..
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~V~i~dGl~~~~~~~k~~~~~~~  370 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNKVHIADGLDFLQRTAKSQQEDIC  370 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhhhhHhhchHHHHHHhhccccccC
Confidence            4678999999999999988877666799999999999999999998764    348999999999999753      357


Q ss_pred             eeEEEEcCC--CCC-CCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          176 YDVIIGDLA--DPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       176 fD~Ii~D~~--~~~-~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      ||+++.|.-  ++. ...|...+.+..+++. ++..|.|.|++++|..++    +......+...|+.+||+.+-+
T Consensus       371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r----~~~~~~~~~~~l~~vf~~l~~~  441 (482)
T KOG2352|consen  371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTR----NSSFKDEVLMNLAKVFPQLYHH  441 (482)
T ss_pred             CcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecC----CcchhHHHHHhhhhhhHHHhhh
Confidence            999999874  321 1234456667889998 899999999999998654    4556778889999999987644

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.25  E-value=3.4e-11  Score=105.08  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++.+..      .++++++.+|+.+. ...+++||+|+
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~V~  122 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDMIY  122 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEEEE
Confidence            4568999999999999998877543 5999999999999999987542      35799999997642 12347899999


Q ss_pred             Ec-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +. ...+.  ..   -....+++. +.++|||||.+++..
T Consensus       123 s~~~l~h~--~~---~d~~~~l~~-i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        123 SRDAILHL--SY---ADKKKLFEK-CYKWLKPNGILLITD  156 (263)
T ss_pred             EhhhHHhC--CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            84 33222  10   012478888 799999999998754

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.4e-11  Score=100.48  Aligned_cols=100  Identities=25%  Similarity=0.300  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+||+||||+|..+.-+++.-  .+|+.||++++..+.|++++...+    -.++.++++|+...... ..+||.|+
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD~I~  143 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYDRII  143 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcCEEE
Confidence            456899999999999999998874  499999999999999999987553    34699999999887643 47899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +....+.  .|          +. +.+.|+|||++++-.+
T Consensus       144 Vtaaa~~--vP----------~~-Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         144 VTAAAPE--VP----------EA-LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EeeccCC--CC----------HH-HHHhcccCCEEEEEEc
Confidence            9986544  34          12 4567999999998765

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.25  E-value=3.8e-10  Score=98.52  Aligned_cols=134  Identities=14%  Similarity=0.129  Sum_probs=93.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++.. ....|+++|+++..++.+++++...+    -.+++++..|+..+.. ..++||.|
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~V  144 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAI  144 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEE
Confidence            345789999999999998887753 23589999999999999999987553    2469999999987643 33569999


Q ss_pred             EEcCCCCCC----CCccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~----~~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|....    ..|..  ..          ...++++. +.+.|||||+++..+.+   + ..+....+.+.+-+.++
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs---~-~~~Ene~vv~~~l~~~~  219 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCS---L-EPEENEAVVDYLLEKRP  219 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC---C-ChHHHHHHHHHHHHhCC
Confidence            999984321    11110  00          12457777 68999999999866543   2 23334455555555544


Q ss_pred             c
Q 025534          244 C  244 (251)
Q Consensus       244 ~  244 (251)
                      .
T Consensus       220 ~  220 (264)
T TIGR00446       220 D  220 (264)
T ss_pred             C
Confidence            3

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.25  E-value=6.1e-11  Score=100.70  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.+++.+.        ++++++.+|+.+.. ..+++||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence            34579999999999999999887555679999999999999988643        47889999987653 2357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...++...      ...+++. +++.|+|||.+++..
T Consensus       104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST  135 (240)
T ss_pred             EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence            9865443212      2468888 799999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.25  E-value=7.1e-12  Score=107.00  Aligned_cols=102  Identities=19%  Similarity=0.336  Sum_probs=76.6

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCC---CeEEEEcchHHHHhcCCCceeEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~---rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +++|||+|||+|.++..|++..  ++|+++|+++++|+.|+++..... .++.+   |+++.+.|+...    .++||+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~----~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGL----TGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhc----cccccee
Confidence            4789999999999999999974  699999999999999999943321 11222   577777876554    3569999


Q ss_pred             EEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++--- .|.. .|      ++|.+. +.++|+|+|.+++-+
T Consensus       163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEeee
Confidence            98632 3321 23      478887 799999999998754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.25  E-value=6.2e-11  Score=103.62  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|..+..+++.. ...+|+++|+++.+++.|+++....+    .++++++.+|+.+. ...++.||+|
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l-~~~~~~fD~V  150 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL-PVADNSVDVI  150 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC-CCCCCceeEE
Confidence            456899999999999887776642 33589999999999999999876432    25889999997653 3335689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++...+.  .+    .....+++ +.++|||||++++.
T Consensus       151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~  182 (272)
T PRK11873        151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS  182 (272)
T ss_pred             EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            98864322  11    12467888 79999999999874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=2.3e-10  Score=106.47  Aligned_cols=135  Identities=17%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..++... +..+|+++|+++..++.+++++...+    -.+++++.+|+..+-....++||.|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~V  311 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDRI  311 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCEE
Confidence            356799999999999998888753 34699999999999999999986442    2468999999987642334689999


Q ss_pred             EEcCCCCCCC----Cccc--C--------C--ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIEG----GPCY--K--------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~~----~p~~--~--------l--~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|.....    .|..  .        +  ...+.+.. +.+.|+|||.++.-+++.   . ++.....++.+-+.+|
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~---~-~eEne~vv~~fl~~~~  386 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV---T-KEENTEVVKRFVYEQK  386 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC---C-hhhCHHHHHHHHHhCC
Confidence            9999853211    1100  0        0  12556777 689999999998776543   2 3334444444434444


Q ss_pred             c
Q 025534          244 C  244 (251)
Q Consensus       244 ~  244 (251)
                      .
T Consensus       387 ~  387 (431)
T PRK14903        387 D  387 (431)
T ss_pred             C
Confidence            3

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.23  E-value=5.8e-11  Score=100.24  Aligned_cols=126  Identities=21%  Similarity=0.345  Sum_probs=87.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH------h-cC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------E-SR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l------~-~~  172 (251)
                      .++.+|||||||+|..+..+++.. +..+|++||+++.           .    ..++++++++|+.+.-      . ..
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            456799999999999999988863 2358999999981           1    1256899999987641      1 12


Q ss_pred             CCceeEEEEcCCCCCCCCcccCC-----ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      .++||+|++|...++...+....     ...+.++. +.+.|+|||.+++..     + ..+.+..++..++..|..+..
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV  187 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence            47899999997432211121000     01457787 699999999999854     2 223466778888888887765


Q ss_pred             e
Q 025534          248 L  248 (251)
Q Consensus       248 ~  248 (251)
                      +
T Consensus       188 ~  188 (209)
T PRK11188        188 R  188 (209)
T ss_pred             E
Confidence            4

>PRK14968 putative methyltransferase; Provisional

Probab=99.23  E-value=2.1e-10  Score=94.24  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++..+++. + .+++++|+++++++.+++++..++  ..+.+++++.+|..+.+.  .++||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence            45678999999999999999887 3 699999999999999999876543  122238899999876543  34899999


Q ss_pred             EcCCCCCCCCccc----------------CCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCY----------------KLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~----------------~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++++.... .+..                ......++++ +.++|+|||.+++...
T Consensus        96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQS  149 (188)
T ss_pred             ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEEc
Confidence            99763110 0100                0112467888 7899999998887653

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.23  E-value=5e-11  Score=99.52  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++.....+     -++++...|...+-  .+++||+|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~-g-~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~~--~~~~fD~I~~  100 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA-G-YDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAAA--LNEDYDFIFS  100 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhcc--ccCCCCEEEE
Confidence            4689999999999999999986 3 589999999999999998765332     13677778865431  2467999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ...-+.. .+   -...++++. ++++|+|||.+++
T Consensus       101 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~lli  131 (195)
T TIGR00477       101 TVVFMFL-QA---GRVPEIIAN-MQAHTRPGGYNLI  131 (195)
T ss_pred             ecccccC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence            7543221 11   113478888 7999999998443

Part of a tellurite-reducing operon tehA and tehB

>PRK04266 fibrillarin; Provisional

Probab=99.22  E-value=1.4e-10  Score=99.09  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--hcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~~~~~~fD~  178 (251)
                      .++.+|||+|||+|.++..+++..+..+|+++|+++++++.+++....      .+++.++.+|+.+..  ....++||+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCCE
Confidence            356799999999999999998864345899999999999977665431      257899999986421  112356999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC-CCCCC--CChHHHHHHHHHHHhh-CC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG-PAGIF--SHTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~-~p~~~--~~~~~~~~i~~~l~~~-F~  243 (251)
                      |++|..+++  .      ...+++. +++.|||||.+++... .+..+  .....++...+.+++. |.
T Consensus       145 i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~  204 (226)
T PRK04266        145 IYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE  204 (226)
T ss_pred             EEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence            999866433  1      1245677 6899999999887321 00001  1224455566777665 44

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.22  E-value=6.4e-11  Score=97.76  Aligned_cols=128  Identities=14%  Similarity=0.188  Sum_probs=85.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+.-.++|++|||.|.++..|+.+.  .+++++|+++..++.||+....      .++|++++.|..++.  +.++||+|
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDLI  110 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDLI  110 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEE
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeEE
Confidence            3455899999999999999999874  6899999999999999998752      378999999998874  45899999


Q ss_pred             EEcCCCCCCCCcccCCcc----HHHHHHHHcccCCCCcEEEEecCCC--C-CCCChHHHHHHHHHHHhhCCce
Q 025534          180 IGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPA--G-IFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~----~ef~~~~~~~~L~pgG~l~~~~~~p--~-~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      ++.--       ...|..    ..+.+. +.++|+|||.+++-.-..  + .|.+...-.++...|.+.+-.+
T Consensus       111 V~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~  175 (201)
T PF05401_consen  111 VLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEV  175 (201)
T ss_dssp             EEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEE
T ss_pred             EEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhe
Confidence            98742       122322    236676 689999999998743100  0 0223334557777777766544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.22  E-value=1.4e-10  Score=100.98  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=80.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||+|||+|.++..++++.+..+|++||+|+.+++.+++.+         ++++++.+|++++..  .++||+|++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs  132 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS  132 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence            357899999999999988877643469999999999999999853         468999999998853  468999999


Q ss_pred             cCCCCCCC---CcccCCc-----------cHHHHHHHHcccCCCCcEEEE-ecCCC
Q 025534          182 DLADPIEG---GPCYKLY-----------TKSFYEFVVKPRLNPEGIFVT-QAGPA  222 (251)
Q Consensus       182 D~~~~~~~---~p~~~l~-----------~~ef~~~~~~~~L~pgG~l~~-~~~~p  222 (251)
                      |+|.....   .....-+           -.+++.. +...|+|+|.+.+ ..+.|
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~yss~~  187 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFAYSGRP  187 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEEEeccc
Confidence            99743210   0000011           2567788 7899999996654 33444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=3.1e-10  Score=106.13  Aligned_cols=116  Identities=22%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+    -.+++++.+|+.++.....++||+|
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~V  324 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDKI  324 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCEE
Confidence            345789999999999999888753 34699999999999999999987543    1359999999987643223689999


Q ss_pred             EEcCCCCCC----CCcccCC------------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPCYKL------------YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~~~l------------~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|++....    ..|....            ...++++. +.++|+|||.++..+.+
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystcs  381 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcCC
Confidence            999873211    0111000            12467888 68999999999876543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=3.4e-11  Score=105.79  Aligned_cols=122  Identities=20%  Similarity=0.205  Sum_probs=87.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++..+++. ++.+|.++|+||..++.|++++..|+.   .+.++.-..+.....  ..++||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~--~~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP--ENGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc--ccCcccEEE
Confidence            47899999999999999999997 567899999999999999999988752   222333333333332  236999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh-hCCc
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKC  244 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~  244 (251)
                      .|...    .|.     ..+... ++++|+|||.+++..     .. .+....+...+.+ -|..
T Consensus       235 ANILA----~vl-----~~La~~-~~~~lkpgg~lIlSG-----Il-~~q~~~V~~a~~~~gf~v  283 (300)
T COG2264         235 ANILA----EVL-----VELAPD-IKRLLKPGGRLILSG-----IL-EDQAESVAEAYEQAGFEV  283 (300)
T ss_pred             ehhhH----HHH-----HHHHHH-HHHHcCCCceEEEEe-----eh-HhHHHHHHHHHHhCCCeE
Confidence            99742    231     366777 789999999999754     22 2335666677743 4543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=3.9e-10  Score=105.44  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+    -.+++++.+|+..+.  ..++||+|
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~V  322 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDAI  322 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCEE
Confidence            345799999999999988877642 23589999999999999999986542    246999999998864  34689999


Q ss_pred             EEcCCCCCC----CCcc--cCC----------ccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          180 IGDLADPIE----GGPC--YKL----------YTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       180 i~D~~~~~~----~~p~--~~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ++|+|....    ..|.  +.+          ...+++.. +.+.|+|||+++..+++.
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence            999874221    0110  011          12357787 689999999999887653

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.20  E-value=1.5e-10  Score=104.08  Aligned_cols=111  Identities=21%  Similarity=0.068  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|+++.+++.. + .+++++|+|+.+++.+++++...+    .++++++.+|+.+. ....++||+|+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~-~-~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv  253 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLM-G-AKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA  253 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHh-C-CeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence            45678999999999999887764 3 689999999999999999886543    23489999998874 33357899999


Q ss_pred             EcCCCCCCCCcccC---CccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYK---LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~---l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+|..........   -...++++. ++++|+|||.+++..
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV  294 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence            99874321111111   113578888 799999999988765

This family is found exclusively in the Archaea.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=4e-10  Score=104.88  Aligned_cols=115  Identities=21%  Similarity=0.265  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+.++++..+..+|+++|+++.+++.+++++...+     .+++++.+|+.+.... ..++||.|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence            35689999999999999999886433699999999999999999987543     2478999999764321 24679999


Q ss_pred             EEcCCCCCC----CCcccC-Cc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPCYK-LY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~~~-l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|+|....    ..|... ..           ..++++. +.+.|+|||.++..+++
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystcs  374 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATCS  374 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence            999974211    011100 01           1357777 68999999999977654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.19  E-value=6.7e-11  Score=99.75  Aligned_cols=102  Identities=25%  Similarity=0.332  Sum_probs=74.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++...+    ..+++++++|+..-... ..+||.|
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~I  145 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDRI  145 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCEE
Confidence            46689999999999999888875 334579999999999999999987542    35899999999876543 4689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++....+.  .|          .. +.+.|++||++++-.+
T Consensus       146 ~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  146 IVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred             EEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence            99875432  23          22 3456999999998554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.19  E-value=1.4e-10  Score=104.40  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||||||+|.++..+++..+..+++++|+++++++.|+++.+       .++++++.+|+.+. ...++.||+|++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVIs  184 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYVS  184 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEEE
Confidence            4579999999999999888875444689999999999999998754       24688999998763 223578999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ...-+....      ....+++ +.+.|+|||.+++.
T Consensus       185 ~~~L~~~~d------~~~~L~e-~~rvLkPGG~LvIi  214 (340)
T PLN02490        185 AGSIEYWPD------PQRGIKE-AYRVLKIGGKACLI  214 (340)
T ss_pred             cChhhhCCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence            653222111      2357888 79999999998763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.18  E-value=2.9e-10  Score=107.06  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++...     ...+++++.+|+.+.. ..+++||+|+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~  337 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY  337 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence            3467999999999999998888654 5899999999999999987542     2357999999976532 2346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.+...      ...+++. +++.|+|||.+++..
T Consensus       338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~  369 (475)
T PLN02336        338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD  369 (475)
T ss_pred             ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence            9643222111      2478888 799999999998764

>PHA03412 putative methyltransferase; Provisional

Probab=99.18  E-value=1.5e-10  Score=98.60  Aligned_cols=103  Identities=11%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+.+|||+|||+|.++..+++.   .+..+|++||+|+.+++.|+++.         ++++++.+|+..+.  ..++||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence            3679999999999999988764   12358999999999999999763         35889999987643  2468999


Q ss_pred             EEEcCCCCCCCCc------ccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~~~~~p------~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ||+|||.......      ...+....+++. +.+++++|+ +++
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~-~IL  160 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGT-FII  160 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCE-EEe
Confidence            9999984321110      012334567777 566555555 444

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=6.3e-10  Score=103.73  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh---cCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~---~~~~~f  176 (251)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+    -.+++++.+|+.++..   ...++|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence            356899999999999999888752 33589999999999999999987543    2469999999987642   124689


Q ss_pred             eEEEEcCCCCCC----CCccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          177 DVIIGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       177 D~Ii~D~~~~~~----~~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |.|++|+|....    ..|..  ..          ...+++.. +.+.|||||.++..+++
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvystcs  386 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYATCT  386 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence            999999974221    01110  00          02567888 68999999999876543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.17  E-value=2.7e-10  Score=102.26  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||||||+|..+..+++.. ...|+++|+++.++..++..-....   .+++++++.+|+.+. .. .++||+|+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~  194 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF  194 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence            356899999999999999998874 4579999999998865432211111   245899999998765 32 57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-.+...|      .++++. +++.|+|||.+++.
T Consensus       195 s~~vl~H~~dp------~~~L~~-l~~~LkpGG~lvl~  225 (322)
T PRK15068        195 SMGVLYHRRSP------LDHLKQ-LKDQLVPGGELVLE  225 (322)
T ss_pred             ECChhhccCCH------HHHHHH-HHHhcCCCcEEEEE
Confidence            85432111122      468888 79999999999875

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.17  E-value=4.1e-11  Score=105.84  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++..+++. ++.+|+++|+||.+++.|+++...|+   -..++++.  ...+.   ..++||+|+
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~--~~~~~---~~~~~dlvv  230 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS--LSEDL---VEGKFDLVV  230 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES--CTSCT---CCS-EEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE--Eeccc---ccccCCEEE
Confidence            45689999999999999999987 56899999999999999999999885   23466553  11111   238999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      .|...    .+   |  .+.... +.++|+|||.+++..     +.. +....+.+.+++
T Consensus       231 ANI~~----~v---L--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~  274 (295)
T PF06325_consen  231 ANILA----DV---L--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQ  274 (295)
T ss_dssp             EES-H----HH---H--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHT
T ss_pred             ECCCH----HH---H--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHC
Confidence            99752    11   1  355666 688999999999854     222 223456666654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.16  E-value=1.3e-10  Score=102.68  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.++++....+     .++++...|+....  .+++||+|+
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~  189 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL-G-FDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL  189 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence            35679999999999999999885 3 599999999999999998876432     26888888876542  257899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +...-+.. .+   -....+++. ++++|+|||.+++
T Consensus       190 ~~~vl~~l-~~---~~~~~~l~~-~~~~LkpgG~~l~  221 (287)
T PRK12335        190 STVVLMFL-NR---ERIPAIIKN-MQEHTNPGGYNLI  221 (287)
T ss_pred             EcchhhhC-CH---HHHHHHHHH-HHHhcCCCcEEEE
Confidence            88643221 11   112478888 7999999998554

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.16  E-value=3.3e-10  Score=93.87  Aligned_cols=124  Identities=20%  Similarity=0.250  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-----Hh--cC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-----l~--~~  172 (251)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+++.+        .       .++++++.+|..+.     +.  ..
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence            457899999999999998887753 34589999999864        1       14578888887542     11  12


Q ss_pred             CCceeEEEEcCCCCCCCCcc-cCCc----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~-~~l~----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      .++||+|++|...+....+. .++.    ...+++. +.+.|+|||++++....      ...+..+++.++..|..+.
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~~------~~~~~~~l~~l~~~~~~~~  167 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVFQ------GEEIDEYLNELRKLFEKVK  167 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEcc------CccHHHHHHHHHhhhceEE
Confidence            46899999986422110110 0111    1467888 79999999999986422      2334567777777775443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.14  E-value=3.6e-10  Score=96.06  Aligned_cols=106  Identities=19%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+||++|||+|..+..+++..+ ..+++++|+++.+++.+++++....   ..++++++.+|+.+.. ...++||+|+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I~  126 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAVT  126 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEEE
Confidence            457999999999999999888643 4799999999999999999875421   2467899999987643 2356899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-+..  +    ...++++. +.+.|+|||.+++.
T Consensus       127 ~~~~l~~~--~----~~~~~l~~-~~~~L~~gG~li~~  157 (239)
T PRK00216        127 IAFGLRNV--P----DIDKALRE-MYRVLKPGGRLVIL  157 (239)
T ss_pred             EecccccC--C----CHHHHHHH-HHHhccCCcEEEEE
Confidence            86432221  1    13578888 79999999988764

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.14  E-value=6.5e-10  Score=94.73  Aligned_cols=111  Identities=19%  Similarity=0.204  Sum_probs=93.9

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~  181 (251)
                      .-+|+||||.|.....+++..+...+.+||+....+..|.+.....+    -+++++++.||.+.+...  +++.|-|.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence            47999999999999999987666799999999999999988776432    238999999999998753  349999999


Q ss_pred             cCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-||||.....  ..+...+|++. +.+.|+|||.+-+.+
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT  164 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT  164 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence            99999953322  47889999999 799999999999865

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.14  E-value=4.2e-10  Score=81.53  Aligned_cols=103  Identities=23%  Similarity=0.265  Sum_probs=78.9

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +++++|||.|..+..+++. ...+++++|+++..++.+++.....    ...+++++.+|..++......+||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence            5899999999999998883 4579999999999999998532222    2467999999999886433578999999976


Q ss_pred             CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ....     .-....+++. +.+.|+|+|.+++.
T Consensus        76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence            4320     1123577887 68999999998863

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.13  E-value=2.8e-10  Score=104.36  Aligned_cols=101  Identities=23%  Similarity=0.373  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..++++.+ .+|+++|+++++++.|++...       ..++++...|..+.    .++||+|+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv  233 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV  233 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence            4567999999999999999988654 589999999999999998753       12488889997653    46899998


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +... .+.  +.   -.-..+++. +.++|||||.+++..
T Consensus       234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~  267 (383)
T PRK11705        234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT  267 (383)
T ss_pred             EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            7643 221  11   112478898 799999999998864

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.13  E-value=7.6e-10  Score=99.02  Aligned_cols=105  Identities=12%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||+|||+|.++..+++. . .+|+++|+++.+++.|+++...++    -++++++.+|+.++.....++||+|++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~-~-~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP-G-MQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            4689999999999999999985 3 699999999999999999987653    257999999999987544457999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |||..   +-     ..+..+. + ..++|++++.+.+++.
T Consensus       247 dPPr~---G~-----~~~~~~~-l-~~~~~~~ivyvsc~p~  277 (315)
T PRK03522        247 NPPRR---GI-----GKELCDY-L-SQMAPRFILYSSCNAQ  277 (315)
T ss_pred             CCCCC---Cc-----cHHHHHH-H-HHcCCCeEEEEECCcc
Confidence            98732   11     2344444 3 3478888887766543

>PRK06922 hypothetical protein; Provisional

Probab=99.12  E-value=3.4e-10  Score=108.47  Aligned_cols=112  Identities=20%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii  180 (251)
                      ++.+|||+|||+|..+..+++..+..+++++|+++.|++.|++.....     ..+++++.+|+.+.-. ..+++||+|+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence            468999999999999988887555579999999999999999875432     2478899999877421 2357899999


Q ss_pred             EcCCCCCC--CCcc-----cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIE--GGPC-----YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~--~~p~-----~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++..-++.  ..|.     ..-....+++. +.++|||||.+++..
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D  537 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD  537 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            87643210  0010     00123578888 799999999999864

>PRK08317 hypothetical protein; Provisional

Probab=99.12  E-value=5e-10  Score=94.91  Aligned_cols=106  Identities=23%  Similarity=0.238  Sum_probs=80.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|..+..++++. +..+++++|+++.+++.++++...     ..++++++.+|+...- ...++||+|
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~v   91 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDAV   91 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceEE
Confidence            456899999999999999988764 456999999999999999987322     2367899999976532 234789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-.....      ...+++. +.++|+|||.+++..
T Consensus        92 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~  124 (241)
T PRK08317         92 RSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD  124 (241)
T ss_pred             EEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence            98754222111      2468888 799999999988654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.12  E-value=6.6e-10  Score=90.53  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||||||+|.++.+++++  ..++++||+|+.+++.+++++..      .++++++.+|+.++.. ...+||.|+.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi~   83 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVVG   83 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEEE
Confidence            4578999999999999999987  36899999999999999988742      3589999999988642 2346999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHc-ccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~-~~L~pgG~l~~~~~  220 (251)
                      |+|...         +.+.+..++. ..+.++|+++++..
T Consensus        84 n~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       84 NLPYNI---------STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             CCCccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            986432         1233444233 23558899998763

>TIGR00452 methyltransferase, putative

Probab=99.12  E-value=5.6e-10  Score=99.63  Aligned_cols=106  Identities=17%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||||||+|..+..++... ...|++||+++.++..++..-....   ..+++.+...|..+.-  ...+||+|+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp--~~~~FD~V~  193 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLH--ELYAFDTVF  193 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCC--CCCCcCEEE
Confidence            456899999999999998888763 4589999999999875432111111   2367888888876542  235899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.+...|      .+++++ +++.|+|||.+++..
T Consensus       194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet  225 (314)
T TIGR00452       194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET  225 (314)
T ss_pred             EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence            87532221122      378888 799999999998753

Known examples to date are restricted to the proteobacteria.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.11  E-value=6.8e-10  Score=93.40  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++..      .++++++.+|+.+.. ...++||+|
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~i  110 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDAV  110 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEEE
Confidence            35789999999999999988886443 5899999999999999988651      357899999987753 234689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++....+....      ...+++. +++.|+|||.+++.
T Consensus       111 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~  142 (223)
T TIGR01934       111 TIAFGLRNVTD------IQKALRE-MYRVLKPGGRLVIL  142 (223)
T ss_pred             EEeeeeCCccc------HHHHHHH-HHHHcCCCcEEEEE
Confidence            98643222111      2478888 79999999998864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.11  E-value=4.5e-10  Score=94.74  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=76.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+||++|||+|..+..+++..  .+|+++|+++++++.+++++...+    -.+++++.+|+.+.+. ..++||+|+
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I~  149 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRIL  149 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEEE
Confidence            356899999999999998777753  489999999999999999886442    2459999999865432 236899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++...+.            +.+. +.+.|+|||++++...
T Consensus       150 ~~~~~~~------------~~~~-l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        150 VTAAAPE------------IPRA-LLEQLKEGGILVAPVG  176 (212)
T ss_pred             EccCchh------------hhHH-HHHhcCCCcEEEEEEc
Confidence            9864221            1234 5678999999988664

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.11  E-value=1.5e-09  Score=100.98  Aligned_cols=136  Identities=21%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+  . ..++.+..+|+..... ...++||.|
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~-~~~v~~~~~d~~~~~~~~~~~~fD~V  313 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--L-TIKAETKDGDGRGPSQWAENEQFDRI  313 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEeccccccccccccccccCEE
Confidence            34689999999999999998886444699999999999999999987543  1 1234446677654321 124679999


Q ss_pred             EEcCCCCCCC----Cccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIEG----GPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~~----~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|.....    .|..  ..          ...+++.. +.+.|||||.++..+++-   . ++....+++.+-+.+|
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~---~-~~Ene~~v~~~l~~~~  388 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV---L-PEENSEQIKAFLQEHP  388 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC---C-hhhCHHHHHHHHHhCC
Confidence            9998743210    1210  00          12567887 689999999999876542   2 3333444444444454


Q ss_pred             c
Q 025534          244 C  244 (251)
Q Consensus       244 ~  244 (251)
                      .
T Consensus       389 ~  389 (426)
T TIGR00563       389 D  389 (426)
T ss_pred             C
Confidence            3

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.09  E-value=1.3e-09  Score=92.84  Aligned_cols=109  Identities=22%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC------cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~  174 (251)
                      .+..++||++||+|-++..++++-+.      .+|+++||||+|+..+++.... .....++++.++.+||.+. ...+.
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence            35689999999999999999987544      6899999999999999988632 1122456899999998774 45568


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .||...+.---..      .-.-...+++ +.|+|||||++.+-
T Consensus       177 s~D~yTiafGIRN------~th~~k~l~E-AYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  177 SFDAYTIAFGIRN------VTHIQKALRE-AYRVLKPGGRFSCL  213 (296)
T ss_pred             cceeEEEecceec------CCCHHHHHHH-HHHhcCCCcEEEEE
Confidence            8998887532110      1112356788 79999999998753

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.09  E-value=1.2e-09  Score=99.91  Aligned_cols=103  Identities=10%  Similarity=0.145  Sum_probs=81.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||+|||+|.++..++.. . .+|++||+|+.+++.|++++..++    -.+++++.+|+.+++....++||+|++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            4578999999999999999874 3 689999999999999999987663    248999999999987543356999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |||..   +.     ..++.+. +. .++|++++.+.+.
T Consensus       307 DPPr~---G~-----~~~~l~~-l~-~~~p~~ivyvsc~  335 (374)
T TIGR02085       307 NPPRR---GI-----GKELCDY-LS-QMAPKFILYSSCN  335 (374)
T ss_pred             CCCCC---CC-----cHHHHHH-HH-hcCCCeEEEEEeC
Confidence            98742   21     2466676 44 5899998888664

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.07  E-value=1.6e-09  Score=101.37  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=80.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      +..+|||+|||+|.++..+++..  .+|+++|+|+.+++.|++++..++    -.+++++.+|+.+++..   .+++||+
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~  370 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK  370 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence            45799999999999999998863  689999999999999999987653    24699999999887642   2357999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |++|+|..   +.      .+.++. +.+ ++|++++.+.++|
T Consensus       371 Vi~dPPr~---g~------~~~~~~-l~~-~~~~~ivyvSCnp  402 (443)
T PRK13168        371 VLLDPPRA---GA------AEVMQA-LAK-LGPKRIVYVSCNP  402 (443)
T ss_pred             EEECcCCc---Ch------HHHHHH-HHh-cCCCeEEEEEeCh
Confidence            99998742   11      245565 444 7999988887654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.07  E-value=5.9e-10  Score=94.36  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=75.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--------CCCCCCCeEEEEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      +++.+||++|||.|..+..++++ + .+|++||+++.+++.+.+......        ......+++++++|+.++-...
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999986 3 589999999999998644221110        0012357999999988763222


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .++||.|+-...-.. ..|   -....+++. +.+.|+|||++++
T Consensus       111 ~~~fD~i~D~~~~~~-l~~---~~R~~~~~~-l~~lLkpgG~~ll  150 (213)
T TIGR03840       111 LGPVDAVYDRAALIA-LPE---EMRQRYAAH-LLALLPPGARQLL  150 (213)
T ss_pred             CCCcCEEEechhhcc-CCH---HHHHHHHHH-HHHHcCCCCeEEE
Confidence            357999886543211 011   113457888 7999999997443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.07  E-value=9.9e-10  Score=93.72  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+||+||||+|.++..+.+. . .+++++|+++.+++.+++++....     .+++++..|+.++.....++||+|++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEEE
Confidence            4678999999999999988885 3 589999999999999998876432     35788899988876445579999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-.....      ..++++. +.+.|+|||.+++..
T Consensus       121 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~  151 (233)
T PRK05134        121 MEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST  151 (233)
T ss_pred             hhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence            643222111      2467888 799999999988764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.07  E-value=1.4e-09  Score=97.45  Aligned_cols=101  Identities=19%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++..+ ..+|++||+++++++.|++++...+    ..+++++.+|+.+.+.. ..+||+|
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I  153 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI  153 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence            3557999999999999999888643 2479999999999999999876543    25799999998876543 3579999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++...+            +.... +.+.|+|||++++..
T Consensus       154 i~~~g~~------------~ip~~-~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        154 FVTVGVD------------EVPET-WFTQLKEGGRVIVPI  180 (322)
T ss_pred             EECCchH------------HhHHH-HHHhcCCCCEEEEEe
Confidence            9984321            11223 467899999988753

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.07  E-value=4.9e-10  Score=92.69  Aligned_cols=104  Identities=18%  Similarity=0.229  Sum_probs=80.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeE-EEEcchHHHHhcCCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~-~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ..+||++|||+|..-...-.. +..+||++|.++.|-+.+.+.+..+    ..+++. ++++|+++..+-.+.+||.|++
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVVC  151 (252)
T ss_pred             ccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence            457899999999987775443 4579999999999999999988755    346776 9999999876446789999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      -.--.....|      .+.+++ ++++|+|||++++.
T Consensus       152 TlvLCSve~~------~k~L~e-~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  152 TLVLCSVEDP------VKQLNE-VRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEeccCCH------HHHHHH-HHHhcCCCcEEEEE
Confidence            7532111123      467788 79999999988764

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.06  E-value=2.7e-09  Score=93.46  Aligned_cols=94  Identities=19%  Similarity=0.306  Sum_probs=71.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC---CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ...+|||+|||+|..+..+++..+   ..+++++|+++.+++.|++..         +++++..+|+.+. ...+++||+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCceeE
Confidence            457899999999999998876422   137999999999999998752         4688999997763 233578999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++...      |       .++++ ++++|+|||.+++..
T Consensus       155 I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~  181 (272)
T PRK11088        155 IIRIYA------P-------CKAEE-LARVVKPGGIVITVT  181 (272)
T ss_pred             EEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence            997421      2       12456 688999999998765

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.06  E-value=1.6e-09  Score=99.20  Aligned_cols=100  Identities=23%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      .+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..|+    -.+++++.+|+..++.. .++||+|++||
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP  133 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP  133 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence            58999999999999998775455689999999999999999998774    24578999999998854 46799999998


Q ss_pred             CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |.    .+      .+|+.. ..+.++++|++.+-.
T Consensus       134 ~G----s~------~~~l~~-al~~~~~~gilyvSA  158 (382)
T PRK04338        134 FG----SP------APFLDS-AIRSVKRGGLLCVTA  158 (382)
T ss_pred             CC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence            61    22      367776 467799999998764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.05  E-value=1.4e-09  Score=92.08  Aligned_cols=105  Identities=19%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+||++|||+|.++..+++..  .+++++|+++.+++.+++++...+    ..++++..+|+.++....+++||+|++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            46799999999999999888753  479999999999999998876432    126899999998876544578999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-.....      ...+++. +.+.|+|||.+++..
T Consensus       119 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       119 MEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST  149 (224)
T ss_pred             hhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence            743221112      2467888 799999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05785 hypothetical protein; Provisional

Probab=99.04  E-value=3.8e-09  Score=90.23  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+.+.. ..+|+++|++++|++.|++.            ...+++|+.+. .-.+++||+|++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~l-p~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEAL-PFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhhC-CCCCCCEEEEEe
Confidence            46899999999999999998864 25899999999999999863            12467887653 344689999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ...-++...      ....+++ ++++|||.+ .++..+.|
T Consensus       117 ~~~l~~~~d------~~~~l~e-~~RvLkp~~-~ile~~~p  149 (226)
T PRK05785        117 SFALHASDN------IEKVIAE-FTRVSRKQV-GFIAMGKP  149 (226)
T ss_pred             cChhhccCC------HHHHHHH-HHHHhcCce-EEEEeCCC
Confidence            754322111      2468888 799999943 23344333

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.04  E-value=1.3e-09  Score=97.04  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..+|||||||+|.++..++++.+..+++++|+ |.+++.++++....+   ..+|++++.+|+++.  .. ..+|+|++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~--~~-~~~D~v~~  221 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE--SY-PEADAVLF  221 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC--CC-CCCCEEEe
Confidence            457999999999999999998755579999998 899999998876432   246899999998752  12 34799876


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .-.-+.. .+   -....+++. +++.|+|||++++.
T Consensus       222 ~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~  253 (306)
T TIGR02716       222 CRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL  253 (306)
T ss_pred             EhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            5432210 11   112467888 79999999999775

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.7e-09  Score=88.47  Aligned_cols=90  Identities=20%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .-.++.|+|+|||+|.++..++-. +..+|++||+||++++.++++.+..     ..+++++++|+.++    ..++|.+
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtv  112 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTV  112 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceE
Confidence            346778999999999999988776 4579999999999999999997642     35899999998776    4789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHH
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEF  203 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~  203 (251)
                      ++|||-...   ..+ .+.+|++.
T Consensus       113 imNPPFG~~---~rh-aDr~Fl~~  132 (198)
T COG2263         113 IMNPPFGSQ---RRH-ADRPFLLK  132 (198)
T ss_pred             EECCCCccc---ccc-CCHHHHHH
Confidence            999974321   112 35667665

>PTZ00146 fibrillarin; Provisional

Probab=99.03  E-value=5.6e-09  Score=91.79  Aligned_cols=128  Identities=18%  Similarity=0.189  Sum_probs=84.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~fD  177 (251)
                      .+..+|||+|||+|.++..+++.- +...|++||+++++.+...+...      ..+++..+.+|++.-  .....+.+|
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD  204 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD  204 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence            455799999999999999999863 23589999999976543333221      125789999998642  121235799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--C-ChHHHHHHHHHHHhh-CC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S-HTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~-~~~~~~~i~~~l~~~-F~  243 (251)
                      +|++|...++  .      ...+... +++.|||||.+++..-..+..  . ..+.+.+-.+.|++. |.
T Consensus       205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~  265 (293)
T PTZ00146        205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK  265 (293)
T ss_pred             EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence            9999986433  1      1234455 688999999988743211111  1 123455555778876 66

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.02  E-value=6e-09  Score=97.06  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      +..+|||+|||+|.++..+++..  .+|++||+++.+++.|++++..++    ..+++++.+|+.+++..   ...+||+
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D~  365 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPDV  365 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence            45789999999999999998853  589999999999999999987653    35899999999887653   2357999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++|++..   +     ...++++. +. .++|++++.+.+
T Consensus       366 vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc  396 (431)
T TIGR00479       366 LLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC  396 (431)
T ss_pred             EEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence            99998742   1     12467776 45 489998776643

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.02  E-value=1.6e-09  Score=91.10  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||+|||+|..+..+.+..+..++++||+|+++++.|++++         ++++++.+|+.+.  ..+++||+|+
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V~  110 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLVL  110 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEEE
Confidence            5678999999999999999988634468999999999999999863         3577888998762  2457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLN  210 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~  210 (251)
                      +...-... .| .  .-.++++. +.++++
T Consensus       111 ~~~vL~hl-~p-~--~~~~~l~e-l~r~~~  135 (204)
T TIGR03587       111 TKGVLIHI-NP-D--NLPTAYRE-LYRCSN  135 (204)
T ss_pred             ECChhhhC-CH-H--HHHHHHHH-HHhhcC
Confidence            87642211 22 1  12467777 677763

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.01  E-value=1.7e-09  Score=101.80  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~~~~fD~Ii  180 (251)
                      +..+|||||||+|.++..++++.  .+|++||+++.+++.+++..+      ..++++++.+|+... +...+++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence            45789999999999999999863  589999999999998776322      136799999998642 222357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +..+-++. .+   -...++++. +++.|+|||.+++.
T Consensus       109 ~~~~l~~l-~~---~~~~~~l~~-~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMYL-SD---KEVENLAER-MVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHhC-CH---HHHHHHHHH-HHHhcCCCeEEEEE
Confidence            98653221 10   012578888 69999999999875

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.00  E-value=3.1e-09  Score=96.98  Aligned_cols=101  Identities=23%  Similarity=0.214  Sum_probs=85.1

Q ss_pred             CeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      -+|||+.+|+|..+.++++. .++.+|+++|+||..++.+++++..++    ..+++++++|+..++....++||+|++|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            48999999999999999886 356799999999999999999998774    2468999999999997656789999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+.    .|      .+|+.. +.+.++++|++.+-.
T Consensus       122 PfG----s~------~~fld~-al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 PFG----TP------APFVDS-AIQASAERGLLLVTA  147 (374)
T ss_pred             CCC----Cc------HHHHHH-HHHhcccCCEEEEEe
Confidence            862    22      268888 678899999988763

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.00  E-value=3.5e-09  Score=89.70  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=74.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|||||||+|.++..+++. . .+|+++|+|+++++.|++++....   ...++++.++|+.+.    .++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~-~-~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR-G-AIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence            35789999999999999999875 3 589999999999999999876432   124799999997653    27899998


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +... .+.  .+ .  ....+++. +.+.+++++++.+
T Consensus       125 ~~~~l~~~--~~-~--~~~~~l~~-i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIHY--PA-S--DMAKALGH-LASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHhC--CH-H--HHHHHHHH-HHHHhCCCEEEEE
Confidence            7432 221  11 0  12356777 6777887666554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03438 probable methyltransferase

Probab=98.99  E-value=4.1e-09  Score=93.75  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC----c
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~----~  175 (251)
                      +++.+|||+|||+|..+..+++... ..++++||+|++|++.|++.+...   +..-+++.+++|..+.+.....    .
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~  138 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR  138 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence            4567899999999999999988632 368999999999999999876531   1123467789998765422211    2


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..+++++..-... .+   -....+++. ++++|+|||.+++-.
T Consensus       139 ~~~~~~gs~~~~~-~~---~e~~~~L~~-i~~~L~pgG~~lig~  177 (301)
T TIGR03438       139 RLGFFPGSTIGNF-TP---EEAVAFLRR-IRQLLGPGGGLLIGV  177 (301)
T ss_pred             eEEEEecccccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEec
Confidence            3345444432211 11   113478999 799999999998754

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.99  E-value=4e-09  Score=94.23  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEE-cchHHHHh---cCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~-~D~~~~l~---~~~~~f  176 (251)
                      ...++||||||+|.+...++......+++++|+|+.+++.|++++..+ +   -..+++++. .|......   ...++|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhcccccCCce
Confidence            457999999999988776665433468999999999999999998866 2   235788864 44433332   235789


Q ss_pred             eEEEEcCCCC
Q 025534          177 DVIIGDLADP  186 (251)
Q Consensus       177 D~Ii~D~~~~  186 (251)
                      |+|++|||..
T Consensus       191 DlivcNPPf~  200 (321)
T PRK11727        191 DATLCNPPFH  200 (321)
T ss_pred             EEEEeCCCCc
Confidence            9999999843

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.99  E-value=1.5e-09  Score=90.02  Aligned_cols=104  Identities=18%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.++||||||.|-.+.+|++. + -.|+++|+|+..++.+++.....     .-.++....|..++-  .++.||+|+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~-G-~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I~   99 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQ-G-FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFIV   99 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHT-T--EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEEE
Confidence            46789999999999999999997 4 58999999999999887765432     234889999976542  347899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +......- .+   -.-+..++. +++.++|||.+++.
T Consensus       100 st~v~~fL-~~---~~~~~i~~~-m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMFL-QR---ELRPQIIEN-MKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGGS--G---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EEEEeccC-CH---HHHHHHHHH-HHhhcCCcEEEEEE
Confidence            86432210 11   122567888 79999999987764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.97  E-value=3.6e-09  Score=89.56  Aligned_cols=113  Identities=18%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC------------------------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------------------------------  151 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------------------------------  151 (251)
                      .++.+|||||-+|.++..++++.+...|.+||||+..|..|+++.+....                              
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            46889999999999999999998888999999999999999998653211                              


Q ss_pred             --------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          152 --------AFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       152 --------~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                              .+...+..+-..|   |+.....+||+|++=+-.-|..---..-=-..||+. +.++|.|||+|++.
T Consensus       138 t~~~p~n~~f~~~n~vle~~d---fl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~k-is~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDD---FLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRK-ISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecch---hhhhccccccEEEEEEeeeeEecccccHHHHHHHHH-HHHhhCcCcEEEEc
Confidence                    0011122223333   333335789999986542221000000012589999 89999999999985

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.97  E-value=2.2e-09  Score=85.54  Aligned_cols=95  Identities=23%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++..+|||||||.|.++..+.+. + .+++++|+++.+++.  .+            +.....+.... ...+++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~~-~~~~~~fD~i~   83 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK--RN------------VVFDNFDAQDP-PFPDGSFDLII   83 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH--TT------------SEEEEEECHTH-HCHSSSEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh--hh------------hhhhhhhhhhh-hccccchhhHh
Confidence            56789999999999999999775 3 399999999999998  11            11111111122 12357999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.+  -+    .-.++++. ++++|||||.+++..
T Consensus        84 ~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~  115 (161)
T PF13489_consen   84 CNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD  115 (161)
T ss_dssp             EESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred             hHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence            9854222  11    13578888 799999999998865

...

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.97  E-value=1e-08  Score=93.46  Aligned_cols=100  Identities=14%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC----------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----------  172 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~----------  172 (251)
                      +.+|||++||+|.++..+++.  ..+|++||+++.+++.++++...++    -.+++++.+|+.++++..          
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence            357999999999999988875  3589999999999999999987664    248999999999987531          


Q ss_pred             -----CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       173 -----~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                           ..+||+|++|||..   +.     ..+.++. +.+   +++++.+.+.
T Consensus       281 ~~~~~~~~~D~v~lDPPR~---G~-----~~~~l~~-l~~---~~~ivyvSC~  321 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRA---GL-----DDETLKL-VQA---YERILYISCN  321 (362)
T ss_pred             cccccCCCCCEEEECCCCC---CC-----cHHHHHH-HHc---cCCEEEEEeC
Confidence                 12599999999842   21     2455565 443   7888877654

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.96  E-value=3.1e-09  Score=86.42  Aligned_cols=112  Identities=20%  Similarity=0.331  Sum_probs=76.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..||||||||.|.+...|++..-....++||.++.++++|+.-....+   ....+++.+.|...- ....++||+|+-
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEee
Confidence            3449999999999999999986322359999999999999886654433   234599999997653 234578888874


Q ss_pred             cCC-CCCC---CCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~-~~~~---~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      --+ +...   ..+..++  .-++.. +.+.|+|||++++-++
T Consensus       143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSC  182 (227)
T ss_pred             cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEec
Confidence            322 1110   1222222  123445 7899999999998764

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.96  E-value=1.3e-08  Score=92.44  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=77.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---------C
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K  173 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---------~  173 (251)
                      +.+|||+|||+|.++..+++..  .+|++||+++++++.|++++..++    -.+++++.+|+.+++...         .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence            3579999999999999888753  589999999999999999988764    247999999999988631         1


Q ss_pred             ------CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       174 ------~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                            .+||+|++|||. .  +.     ..++++. +.   +|++++.+.+.
T Consensus       272 ~~~~~~~~~d~v~lDPPR-~--G~-----~~~~l~~-l~---~~~~ivYvsC~  312 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPR-A--GL-----DPDTCKL-VQ---AYERILYISCN  312 (353)
T ss_pred             ccccccCCCCEEEECCCC-C--CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence                  248999999983 2  21     2355555 43   37888887664

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.95  E-value=2.7e-09  Score=90.67  Aligned_cols=109  Identities=12%  Similarity=0.040  Sum_probs=75.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--------CCCCCCCeEEEEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      +++.+||++|||.|..+..|+++ + .+|++||+++..++.+.+......        ..+...+++++++|++++-...
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~-G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ-G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC-C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            35579999999999999999986 3 589999999999998643211110        0123468999999998874322


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ..+||.|+--..-..  -|.  -....+++. +.+.|+|||+++
T Consensus       114 ~~~fd~v~D~~~~~~--l~~--~~R~~~~~~-l~~lL~pgG~~~  152 (218)
T PRK13255        114 LADVDAVYDRAALIA--LPE--EMRERYVQQ-LAALLPAGCRGL  152 (218)
T ss_pred             CCCeeEEEehHhHhh--CCH--HHHHHHHHH-HHHHcCCCCeEE
Confidence            357999985432111  111  113567888 799999998533

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=1.4e-08  Score=87.52  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE----EcchHHHHhcCCCc
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES  175 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~----~~D~~~~l~~~~~~  175 (251)
                      +.++..+||+|||+|+++..+++.-+...|++||.++.++.+|.++.....   ...++.++    ..|...-.....++
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~  222 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK  222 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence            345668999999999999999886446799999999999999999875432   24578777    44544333233489


Q ss_pred             eeEEEEcCCCC-CC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534          176 YDVIIGDLADP-IE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       176 fD~Ii~D~~~~-~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|+|++|+|.- ..           ..|...|.        -..++.. +.|+|+|||.+.++..
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence            99999999821 10           11111111        1245555 5799999999998875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.92  E-value=2.3e-08  Score=84.91  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..  .+|+++|+++.+++.|++++...+   ...+++++.+|. ..   ..+.||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~~---~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-ES---LLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-hh---ccCCcCEEE
Confidence            456799999999999999998863  479999999999999999876432   125899999993 22   246899999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      +... .+.   +..  .....++. +.+.+++++++.
T Consensus       133 ~~~~l~~~---~~~--~~~~~l~~-l~~~~~~~~~i~  163 (230)
T PRK07580        133 CLDVLIHY---PQE--DAARMLAH-LASLTRGSLIFT  163 (230)
T ss_pred             EcchhhcC---CHH--HHHHHHHH-HHhhcCCeEEEE
Confidence            8643 222   111  12355666 566665444443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.91  E-value=4.2e-09  Score=89.09  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .-+-++|+|||+|..++-++.++  .+|+++|++++|++.|+++.+...   .+-..++...|...++. .+++.|+|++
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI~~  106 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLITA  106 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeeehh
Confidence            33479999999998888888886  589999999999999999876432   33455666667666653 3689999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCc-EEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG-~l~~~~  219 (251)
                      .-.-||       +...+||+. ++++||++| +++++.
T Consensus       107 Aqa~HW-------Fdle~fy~~-~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen  107 AQAVHW-------FDLERFYKE-AYRVLRKDGGLIAVWN  137 (261)
T ss_pred             hhhHHh-------hchHHHHHH-HHHHcCCCCCEEEEEE
Confidence            765555       224689999 899999977 777765

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.91  E-value=1.8e-08  Score=84.83  Aligned_cols=105  Identities=20%  Similarity=0.282  Sum_probs=84.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~  174 (251)
                      -.++++|+||.-+|..+...+. .++..+|+++|+|+...+++.+..+..+   .+.+++++++++.+-+.+     ..+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence            3689999999999998766654 4667899999999999999987766443   467999999999988764     247


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||++|+|..-.        .|. .+++. +-+.||+||++++.
T Consensus       149 tfDfaFvDadK~--------nY~-~y~e~-~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  149 TFDFAFVDADKD--------NYS-NYYER-LLRLLRVGGVIVVD  182 (237)
T ss_pred             ceeEEEEccchH--------HHH-HHHHH-HHhhcccccEEEEe
Confidence            899999996421        222 78888 58999999999874

>PRK06202 hypothetical protein; Provisional

Probab=98.89  E-value=7.9e-09  Score=88.30  Aligned_cols=103  Identities=16%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      .++.+|||||||+|.++..+++.    ....+|+++|+++.+++.|++....       +++++...|+... ...+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence            45679999999999998887753    2235899999999999999987532       3456666654333 2245789


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|++...-++...+    ...++++. +.+.++  |.++++
T Consensus       131 D~V~~~~~lhh~~d~----~~~~~l~~-~~r~~~--~~~~i~  165 (232)
T PRK06202        131 DVVTSNHFLHHLDDA----EVVRLLAD-SAALAR--RLVLHN  165 (232)
T ss_pred             cEEEECCeeecCChH----HHHHHHHH-HHHhcC--eeEEEe
Confidence            999998643221111    12468888 688887  444444

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.89  E-value=2.9e-09  Score=89.09  Aligned_cols=100  Identities=25%  Similarity=0.401  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+...|||+.||-|.++..++++.....|.++|+||..++..+++..+|+   -..++.++.+|+++++.  ...||.|+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~~~i~~~~~D~~~~~~--~~~~drvi  174 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VENRIEVINGDAREFLP--EGKFDRVI  174 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CCCeEEEEcCCHHHhcC--ccccCEEE
Confidence            46789999999999999999986566789999999999999999999885   34689999999999986  67999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ++.|..          +.+|+.. +.+++++||++-
T Consensus       175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPES----------SLEFLDA-ALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred             ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence            997632          2367777 678899998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.89  E-value=3.3e-08  Score=88.36  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+|||||||+|.++..+++. + .+|+++|+++.+++.++++.+.... .....++++...|....    .++||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence            4679999999999999999986 3 5899999999999999998753210 00124688899996543    47899998


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +... .+.   |...  ..++++. +. .+.++|+++.
T Consensus       218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs  248 (315)
T PLN02585        218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIIS  248 (315)
T ss_pred             EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEE
Confidence            7532 221   1100  1245665 44 4667776653

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.86  E-value=9.4e-09  Score=84.73  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      +++.||||||||+|.+...|.+.. ..+..+||+|++-+..|.++           .+.++++|+-+.+.. .+++||.|
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V   79 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV   79 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence            567999999999999999988865 46899999999998888764           578999999998864 56899999


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      |+.-+
T Consensus        80 Ilsqt   84 (193)
T PF07021_consen   80 ILSQT   84 (193)
T ss_pred             ehHhH
Confidence            99865

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.85  E-value=6.9e-09  Score=90.63  Aligned_cols=111  Identities=15%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             CCCeEEEEecCchH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhchh-c-----------------ccCCC-
Q 025534          102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-V-----------------NKEAF-  153 (251)
Q Consensus       102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~-~-----------------~~~~~-  153 (251)
                      ++.+|+++|||+|.    ++..+++..+     ..+|+++|+|+.+++.|++..- .                 .++.+ 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4444544321     3589999999999999998531 0                 00000 


Q ss_pred             ----CCCCeEEEEcchHHHHhcCCCceeEEEEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          154 ----SDPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       154 ----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                          -..++++...|+.+.- ...++||+|++-. ....  .+   -....+++. +.++|+|||.+++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~~---~~~~~~l~~-l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--DE---PTQRKLLNR-FAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--CH---HHHHHHHHH-HHHHhCCCeEEEEEC
Confidence                0136888999976632 1257899999943 2211  11   112468888 799999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.83  E-value=7.1e-08  Score=91.60  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=97.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      ...-+|+||||.|..+..+++..+...+.+||+....+..+.+.....    .-.++.++..|+..+... .+.+.|.|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i~  422 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGIY  422 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence            456799999999999988888656678999999999888776654322    235789999997655443 347899999


Q ss_pred             EcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          181 GDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       181 ~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      +.-||||....  ...+.+.+|++. +++.|+|||.+.+.+.      ..+++..++..+.+
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~  477 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ  477 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence            99999994321  347889999999 8999999999988652      34556566666554

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.78  E-value=2.8e-08  Score=92.73  Aligned_cols=105  Identities=19%  Similarity=0.315  Sum_probs=73.3

Q ss_pred             CCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+-|||+|+|+|.++..+++.    ....+|.+||.|+.++...++....++  + ..+|+++.+|.+++-  .+++.|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence            356999999999998776653    234699999999998887766544332  2 468999999999873  3579999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ||+-.....  +- .+ ...|.+.. ..+.|||||+++=
T Consensus       262 IVSElLGsf--g~-nE-l~pE~Lda-~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  262 IVSELLGSF--GD-NE-LSPECLDA-ADRFLKPDGIMIP  295 (448)
T ss_dssp             EEE---BTT--BT-TT-SHHHHHHH-GGGGEEEEEEEES
T ss_pred             EEEeccCCc--cc-cc-cCHHHHHH-HHhhcCCCCEEeC
Confidence            999886433  21 22 35678887 6899999999873

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.77  E-value=9e-08  Score=84.09  Aligned_cols=113  Identities=18%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             hHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHH---HhchhcccCCCCCCCeEEEEc
Q 025534           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC---KSYLVVNKEAFSDPRLELVIN  163 (251)
Q Consensus        87 ~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a---~~~~~~~~~~~~~~rv~~~~~  163 (251)
                      -+.+..-|++   .-.+++|||||||.|..+..+++. +++.|+++|.++...-..   +++++      .++++. ...
T Consensus       103 KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~-~lp  171 (315)
T PF08003_consen  103 KWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLG------QDPPVF-ELP  171 (315)
T ss_pred             hHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhC------CCccEE-EcC
Confidence            4555444442   347899999999999999999986 557899999988765542   22222      122333 333


Q ss_pred             chHHHHhcCCCceeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          164 DARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       164 D~~~~l~~~~~~fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+.+.+.. .+.||+|++--- .|. ..|      .+.+++ +++.|+|||.+++++
T Consensus       172 lgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  172 LGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLET  219 (315)
T ss_pred             cchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEE
Confidence            56666655 578999998642 222 144      267778 799999999999764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.76  E-value=3.5e-07  Score=85.90  Aligned_cols=135  Identities=18%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+++|.|+=+.+++..- +...|+++|+++.-++..++++...+    -.++.+...|+..+.....+.||.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I  187 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI  187 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence            356899999999999888887752 33589999999999999999886432    3578999999987654445789999


Q ss_pred             EEcCCCCCC----CCccc-CCc-----------cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~----~~p~~-~l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|....    ..|.. .-+           ..+++.. +.+.|||||+++-.+++   + .++....+++.+-+.++
T Consensus       188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT---~-~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT---L-NREENQAVCLWLKETYP  262 (470)
T ss_pred             EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC---C-CHHHHHHHHHHHHHHCC
Confidence            999985432    11210 011           2567777 67999999999755543   3 35556666666655565


Q ss_pred             c
Q 025534          244 C  244 (251)
Q Consensus       244 ~  244 (251)
                      .
T Consensus       263 ~  263 (470)
T PRK11933        263 D  263 (470)
T ss_pred             C
Confidence            4

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.75  E-value=2.8e-08  Score=80.38  Aligned_cols=75  Identities=23%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEEEc
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~-~fD~Ii~D  182 (251)
                      .|+|+.||.|+.+.++++..  .+|++||+||.-++.|+.+...-+   ...+++++++|.++.++... . .||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            58999999999999999974  589999999999999999987543   35689999999999886532 2 28999999


Q ss_pred             CC
Q 025534          183 LA  184 (251)
Q Consensus       183 ~~  184 (251)
                      ||
T Consensus        77 PP   78 (163)
T PF09445_consen   77 PP   78 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            86

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.75  E-value=1.1e-07  Score=84.40  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|||||||.|.++..+++..  .+|+++|+|+.+++.+++++...+   ..++++++.+|+.+.-   -..||.|+
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv  106 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV  106 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence            345789999999999999998863  589999999999999999876432   2468999999987752   24799999


Q ss_pred             EcCCCC
Q 025534          181 GDLADP  186 (251)
Q Consensus       181 ~D~~~~  186 (251)
                      .|+|..
T Consensus       107 aNlPY~  112 (294)
T PTZ00338        107 ANVPYQ  112 (294)
T ss_pred             ecCCcc
Confidence            998743

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.7e-07  Score=76.29  Aligned_cols=126  Identities=22%  Similarity=0.239  Sum_probs=90.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++=+|+||||+|.++..+.+. .+.....+.||||.+.+..++-...|+     -+++.++.|...-++.  ++.|+++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-----~~~~~V~tdl~~~l~~--~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-----VHIDVVRTDLLSGLRN--ESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-----CccceeehhHHhhhcc--CCccEEE
Confidence            4677999999999999888774 344678899999999999888776653     5689999999998875  8999999


Q ss_pred             EcCCC-CCCCCcc--------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLAD-PIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~-~~~~~p~--------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      .+++. |....+.              ..-.+..++.+ +...|+|.|++.+.....      ..-+++++.|++.
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~~------N~p~ei~k~l~~~  184 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALRA------NKPKEILKILEKK  184 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehhh------cCHHHHHHHHhhc
Confidence            99872 3221111              11113456777 689999999998876332      1224556655543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.70  E-value=5.3e-08  Score=81.00  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  179 (251)
                      +++.+|||||||+|.++..+++..+ ..++++|+++++++.+++.           +++++.+|+.+.+. ..+++||+|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEE
Confidence            3567999999999999988876543 5789999999999988742           46788899876443 235789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP  211 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p  211 (251)
                      ++...-++...      ...++++ +.+.+++
T Consensus        80 i~~~~l~~~~d------~~~~l~e-~~r~~~~  104 (194)
T TIGR02081        80 ILSQTLQATRN------PEEILDE-MLRVGRH  104 (194)
T ss_pred             EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence            99864322111      2356666 5665553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.69  E-value=4.5e-09  Score=88.36  Aligned_cols=100  Identities=21%  Similarity=0.306  Sum_probs=74.7

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii~  181 (251)
                      -+++||||||||..+-.+...  +.++++||||..|++.|.+.=.         -=++.++|+..|++ .++++||+|..
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence            479999999999999887664  4689999999999999987521         12577889988997 45689999986


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ----+.. +   .|  ..+|.. +...|+|||.|++.+.
T Consensus       195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE  226 (287)
T COG4976         195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE  226 (287)
T ss_pred             hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence            4211111 1   11  345666 6899999999988664

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.68  E-value=7.5e-08  Score=80.62  Aligned_cols=105  Identities=19%  Similarity=0.173  Sum_probs=79.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.=+||||||+|..+..+... + -..++|||+|.|++.|.+. ...        -.++.+|.-+-+...+++||-+|+-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             CcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence            667999999999999887764 3 4799999999999999862 111        2577788777777778999988876


Q ss_pred             CCCCCC-------CCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          183 LADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       183 ~~~~~~-------~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ..-.|.       ..|...  ...||.. +..+|++|+..++|..+
T Consensus       120 SAvQWLcnA~~s~~~P~~R--l~~FF~t-Ly~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKR--LLRFFGT-LYSCLKRGARAVLQFYP  162 (270)
T ss_pred             eeeeeecccCccccChHHH--HHHHhhh-hhhhhccCceeEEEecc
Confidence            553332       122212  2468998 79999999999999854

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.67  E-value=7.5e-08  Score=83.83  Aligned_cols=74  Identities=18%  Similarity=0.361  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..+|||||||+|.++..+++..  .+|++||+|+.+++.+++++..      .++++++++|+.++-   -..||.|++
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv~   97 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVVS   97 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEEE
Confidence            46789999999999999999873  5899999999999999987642      368999999987642   245899999


Q ss_pred             cCCCC
Q 025534          182 DLADP  186 (251)
Q Consensus       182 D~~~~  186 (251)
                      ++|..
T Consensus        98 NlPy~  102 (258)
T PRK14896         98 NLPYQ  102 (258)
T ss_pred             cCCcc
Confidence            98743

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.67  E-value=1.5e-07  Score=80.16  Aligned_cols=110  Identities=12%  Similarity=0.039  Sum_probs=77.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc--------cCCCCCCCeEEEEcchHHHHh--
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE--  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--------~~~~~~~rv~~~~~D~~~~l~--  170 (251)
                      +++.|||+.|||.|.-+.+|+.+ + -+|++||+++..++.+.+.....        ...+...+++++++|.+++-.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~-G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK-G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC-C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            35689999999999999999997 3 47999999999999986632110        001234589999999988621  


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ...++||+|+--.+-... .|   -....+.+. +.+.|+|||.+++
T Consensus       120 ~~~~~fD~VyDra~~~Al-pp---~~R~~Y~~~-l~~lL~pgg~lll  161 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIAL-PN---DLRTNYAKM-MLEVCSNNTQILL  161 (226)
T ss_pred             cccCCcCeeeeehhHhcC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence            122589998865442210 12   124567777 7999999997764

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.65  E-value=5.4e-08  Score=82.68  Aligned_cols=107  Identities=14%  Similarity=0.145  Sum_probs=75.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHh-chhccc-------CCCCCCCeEEEEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~~~~~~-------~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      +.+.+||+.|||.|.-+..|+++ + -+|++||+++.+++.+.+ +.....       ......+++++++|.+++-...
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            45679999999999999999997 4 589999999999999843 321110       0123568999999998864333


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~  214 (251)
                      .++||+|+=-.+-..  -|  .-...++.+. ++++|+|||.
T Consensus       114 ~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~  150 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR  150 (218)
T ss_dssp             HHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred             cCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence            358999996654322  22  1234567777 8999999998

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.64  E-value=1e-07  Score=80.11  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...++||+|+|-|-++..++.. -..+|+.||..+..++.|++++...    .....++++.-..+|... ..+||+|++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P~-~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTPE-EGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccCC-CCcEeEEEe
Confidence            4578999999999999988764 2579999999999999999987642    123356777777777543 468999999


Q ss_pred             cCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ...-       .+|..   .+|++. +++.|+|+|++++.
T Consensus       129 QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             hHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence            8541       34544   468999 59999999999984

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.63  E-value=4.6e-07  Score=81.36  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=88.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.+|+   -..++..+++|++++.... ..+|-|+
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-GVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc-ccCCEEE
Confidence            4589999999999999999999754 459999999999999999999986   3456999999999998654 7899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +..+..          +.+|+.. ..+.++++|++-.....|
T Consensus       262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccc
Confidence            997631          3466776 678899999998876544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.63  E-value=8.1e-08  Score=82.47  Aligned_cols=98  Identities=22%  Similarity=0.233  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ...++|+|||+|.|.++..+++..+..+++..|+ |++++.+++          .+|++++.+|.+   ...+. +|+|+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~  163 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL  163 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence            3457899999999999999998766679999999 999999988          269999999976   33445 99999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCC--cEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pg--G~l~~~~  219 (251)
                      +--. +.|  .+   -.....++. +++.|+||  |+|++..
T Consensus       164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred             eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence            8654 223  11   113467888 69999998  9887754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=3.9e-07  Score=84.71  Aligned_cols=105  Identities=20%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~I  179 (251)
                      ...+|||+=||.|.++..+++.  ..+|++||+++++++.|+++...|+    ..+++++.+|+.++....  ...+|.|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V  366 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV  366 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence            3468999999999999999974  4799999999999999999998875    345999999999998764  3689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ++|||-..   -     .+++.+. + ..++|..++.+.+++.
T Consensus       367 vvDPPR~G---~-----~~~~lk~-l-~~~~p~~IvYVSCNP~  399 (432)
T COG2265         367 VVDPPRAG---A-----DREVLKQ-L-AKLKPKRIVYVSCNPA  399 (432)
T ss_pred             EECCCCCC---C-----CHHHHHH-H-HhcCCCcEEEEeCCHH
Confidence            99998532   1     3577787 3 5789999998877543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.60  E-value=1.2e-07  Score=83.13  Aligned_cols=75  Identities=16%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..++++.  .+|+++|+|+++++.+++.+.       .++++++++|+.++-. .+-.+|.|+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~-~~~~~~~vv  110 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDL-SELQPLKVV  110 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCH-HHcCcceEE
Confidence            356789999999999999999874  389999999999999998653       2689999999887521 111159999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      .++|.
T Consensus       111 ~NlPY  115 (272)
T PRK00274        111 ANLPY  115 (272)
T ss_pred             EeCCc
Confidence            99863

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.59  E-value=5.4e-07  Score=72.48  Aligned_cols=107  Identities=18%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hc-CCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ES-RKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~-~~~~f  176 (251)
                      .+..||++|.|+|.+++.++++. ....++++|.|++.+....+.+         |.++++.+|+++.=   .. .+..|
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq~~  118 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQFF  118 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCCee
Confidence            45689999999999999999973 2368999999999999888865         45679999988642   22 35789


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |.||+..|--.  -|.  -.+.+.++. +..+|..||.++.-...|
T Consensus       119 D~viS~lPll~--~P~--~~~iaile~-~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         119 DSVISGLPLLN--FPM--HRRIAILES-LLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             eeEEecccccc--CcH--HHHHHHHHH-HHHhcCCCCeEEEEEecC
Confidence            99999886322  221  224578888 789999999888655333

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.8e-07  Score=77.75  Aligned_cols=106  Identities=23%  Similarity=0.290  Sum_probs=78.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcc------cCCCCCCCeEEEEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      .++.+.|++|.|+|.++..+.+.  .+.....+||.-|++++.+++++...      ..-+..+++.++.+|++..-. .
T Consensus        81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~-e  159 (237)
T KOG1661|consen   81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA-E  159 (237)
T ss_pred             ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-c
Confidence            35689999999999988776653  22234599999999999999987532      223567899999999987643 4


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ..+||.|.+-+..+.  .|          +. +-..|++||.+++-.+
T Consensus       160 ~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  160 QAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG  194 (237)
T ss_pred             cCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence            579999999865433  22          34 5677999998887543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.57  E-value=3.3e-07  Score=75.51  Aligned_cols=111  Identities=21%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcE---------EEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~  171 (251)
                      .+...|||--||+|+++.+.+.......         +.++|+|+++++.|++++...+   ....+.+...|+.++- .
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~  102 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L  102 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence            3457899999999999988876422223         8899999999999999987443   2356899999998864 3


Q ss_pred             CCCceeEEEEcCCCCCCCCc---ccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p---~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ..+.+|+|++|+|.....+.   ...| -.+|++. ++++|++..++++
T Consensus       103 ~~~~~d~IvtnPPyG~r~~~~~~~~~l-y~~~~~~-~~~~l~~~~v~l~  149 (179)
T PF01170_consen  103 PDGSVDAIVTNPPYGRRLGSKKDLEKL-YRQFLRE-LKRVLKPRAVFLT  149 (179)
T ss_dssp             TTSBSCEEEEE--STTSHCHHHHHHHH-HHHHHHH-HHCHSTTCEEEEE
T ss_pred             ccCCCCEEEECcchhhhccCHHHHHHH-HHHHHHH-HHHHCCCCEEEEE
Confidence            45789999999985432111   1122 2457777 6899999545554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=5e-07  Score=78.22  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC--ceeEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~--~fD~Ii  180 (251)
                      ...||+||.|.|+++..|++..  .+|++||+|+.+++..++.+..      .++++++++|+..+=  .++  .++.|+
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d--~~~l~~~~~vV  100 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFD--FPSLAQPYKVV  100 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCc--chhhcCCCEEE
Confidence            5789999999999999999974  5899999999999999988752      368999999988752  223  789999


Q ss_pred             EcCCCC
Q 025534          181 GDLADP  186 (251)
Q Consensus       181 ~D~~~~  186 (251)
                      .|.|..
T Consensus       101 aNlPY~  106 (259)
T COG0030         101 ANLPYN  106 (259)
T ss_pred             EcCCCc
Confidence            998754

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.54  E-value=5.2e-07  Score=80.71  Aligned_cols=121  Identities=23%  Similarity=0.117  Sum_probs=87.1

Q ss_pred             HHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chH
Q 025534           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR  166 (251)
Q Consensus        88 y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~  166 (251)
                      +.+.|+.++.  ..++..|||--||||+++.++.-. + .++.+.|+|.+|++-|+.|+..-+    -+...++.. |+.
T Consensus       185 lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~  256 (347)
T COG1041         185 LARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDAT  256 (347)
T ss_pred             HHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccc
Confidence            4455554332  345679999999999999998765 4 699999999999999999987542    245656666 876


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCC-Ccc---cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          167 AELESRKESYDVIIGDLADPIEG-GPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~-~p~---~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      + ++-.+.++|.|++|||..... ...   ..| ..++++. ..++|++||.+++..
T Consensus       257 ~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~-~~evLk~gG~~vf~~  310 (347)
T COG1041         257 N-LPLRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALES-ASEVLKPGGRIVFAA  310 (347)
T ss_pred             c-CCCCCCccceEEecCCCCcccccccccHHHH-HHHHHHH-HHHHhhcCcEEEEec
Confidence            5 333334699999999854321 111   122 3578888 799999999998865

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.54  E-value=6e-07  Score=77.85  Aligned_cols=74  Identities=22%  Similarity=0.353  Sum_probs=60.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee---
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD---  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD---  177 (251)
                      .++.+|||||||+|.++..+++..  .+++++|+|+.+++.+++.+..      .++++++.+|+.++-.   ..||   
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~   96 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL   96 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence            356799999999999999999875  4699999999999999987642      3689999999876421   2466   


Q ss_pred             EEEEcCCC
Q 025534          178 VIIGDLAD  185 (251)
Q Consensus       178 ~Ii~D~~~  185 (251)
                      +|+.+++.
T Consensus        97 ~vvsNlPy  104 (253)
T TIGR00755        97 KVVSNLPY  104 (253)
T ss_pred             eEEEcCCh
Confidence            89988763

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.52  E-value=3e-07  Score=75.31  Aligned_cols=108  Identities=22%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--h-cCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~-~~~~~fD  177 (251)
                      .++++||+||||+|..+..+++..+..+|++-|.++ +++.++++...|.. ...+++++..-|-.+.+  . ....+||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence            467899999999999999888874457999999999 99999999887642 12456777665432211  1 1246899


Q ss_pred             EEEEc-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+.. ...    .+   -....+++. +++.|+++|.+++-
T Consensus       122 ~IlasDv~Y----~~---~~~~~L~~t-l~~ll~~~~~vl~~  155 (173)
T PF10294_consen  122 VILASDVLY----DE---ELFEPLVRT-LKRLLKPNGKVLLA  155 (173)
T ss_dssp             EEEEES--S-----G---GGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred             EEEEecccc----hH---HHHHHHHHH-HHHHhCCCCEEEEE
Confidence            99964 321    11   123567777 79999999975543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.45  E-value=1.6e-06  Score=74.73  Aligned_cols=92  Identities=15%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...++||||.|+|.++..++.+.  .+|.+-|+++.|....++.           ..+++..|  ++ .+.+.+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w-~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DW-QQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hh-hccCCceEEEee
Confidence            45789999999999999998865  5899999999998766653           34444333  33 344678999987


Q ss_pred             -cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 -D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                       |..|... .|      ...++. +++.|+|+|++++
T Consensus       158 LNvLDRc~-~P------~~LL~~-i~~~l~p~G~lil  186 (265)
T PF05219_consen  158 LNVLDRCD-RP------LTLLRD-IRRALKPNGRLIL  186 (265)
T ss_pred             hhhhhccC-CH------HHHHHH-HHHHhCCCCEEEE
Confidence             3444332 34      367788 7999999998875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.44  E-value=4.5e-07  Score=80.82  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=74.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +.+.|||+|||+|.++...++. ++.+|.+||.+..+ +.|++-+..|+   -...++++.+.+.+.. -+.++.|+|++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi~-LP~eKVDiIvS  133 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDIE-LPVEKVDIIVS  133 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEEe-cCccceeEEee
Confidence            5789999999999999999997 46899999997655 89998877664   3457899999887762 23489999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHH---cccCCCCcEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVV---KPRLNPEGIFV  216 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~---~~~L~pgG~l~  216 (251)
                      ..-..       .|+-...+..++   -+.|+|||.+.
T Consensus       134 EWMGy-------~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGY-------FLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhH-------HHHHhhhhhhhhhhhhhccCCCceEc
Confidence            85321       122222222211   37899999886

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=2.2e-06  Score=73.94  Aligned_cols=124  Identities=19%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~~~fD  177 (251)
                      .++..||+-|.|+|++++.+++. .+-.++...|....-.+.|++.|...+   -..++++++.|...  |.. ...++|
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks~~aD  179 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KSLKAD  179 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-cccccc
Confidence            45689999999999999999985 345799999999999999999998654   35689998888654  222 246899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCce
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCG  245 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v  245 (251)
                      .|++|.+.||...|.            +.++|+.+|.-+++. +||    .+..++..+.|++. |-..
T Consensus       180 aVFLDlPaPw~AiPh------------a~~~lk~~g~r~csF-SPC----IEQvqrtce~l~~~gf~~i  231 (314)
T KOG2915|consen  180 AVFLDLPAPWEAIPH------------AAKILKDEGGRLCSF-SPC----IEQVQRTCEALRSLGFIEI  231 (314)
T ss_pred             eEEEcCCChhhhhhh------------hHHHhhhcCceEEec-cHH----HHHHHHHHHHHHhCCCceE
Confidence            999999999965552            345888888655554 344    46667777777763 4433

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.40  E-value=6.9e-07  Score=81.20  Aligned_cols=79  Identities=20%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---------
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---------  171 (251)
                      +.+.+|||+-||.|.++..+++..  .+|++||+++.+++.|+++...++    -.+++++.+++.++...         
T Consensus       195 ~~~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~  268 (352)
T PF05958_consen  195 LSKGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR  268 (352)
T ss_dssp             T-TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred             cCCCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence            334589999999999999998863  699999999999999999998874    46899999887665321         


Q ss_pred             ------CCCceeEEEEcCCC
Q 025534          172 ------RKESYDVIIGDLAD  185 (251)
Q Consensus       172 ------~~~~fD~Ii~D~~~  185 (251)
                            ...++|+|++|||-
T Consensus       269 ~~~~~~~~~~~d~vilDPPR  288 (352)
T PF05958_consen  269 LKGIDLKSFKFDAVILDPPR  288 (352)
T ss_dssp             GGGS-GGCTTESEEEE---T
T ss_pred             hhhhhhhhcCCCEEEEcCCC
Confidence                  12369999999984

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.38  E-value=3.4e-06  Score=70.53  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      .++.|||.+|.|-|.+...+-+.++ .+-+.+|..|.|.+..|++-..     +..+|.++.+--.+.+.+ .++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence            5789999999999999998888765 5778899999999999987442     346777777665555544 24679999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +-|.+.+.      .-.+.+|++. +-+.|||+|++..-
T Consensus       174 ~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  174 YYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYF  205 (271)
T ss_pred             EeechhhH------HHHHHHHHHH-HhhhcCCCceEEEe
Confidence            99988432      1124689998 79999999999753

>PRK10742 putative methyltransferase; Provisional

Probab=98.37  E-value=5.7e-06  Score=71.14  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc--cCCCC---CCCeEEEEcchHHHHhcCCCceeEE
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAFS---DPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~~---~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +|||+-+|.|..+.+++.. + ++|++||-+|.+..+.++.+...  .....   ..|++++++|+.+|+....+.||+|
T Consensus        91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV  168 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_pred             EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence            8999999999999999987 4 46999999999999999887531  11111   1579999999999998766789999


Q ss_pred             EEcCCCCC
Q 025534          180 IGDLADPI  187 (251)
Q Consensus       180 i~D~~~~~  187 (251)
                      ++||+.|.
T Consensus       169 YlDPMfp~  176 (250)
T PRK10742        169 YLDPMFPH  176 (250)
T ss_pred             EECCCCCC
Confidence            99998654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=6.8e-07  Score=75.43  Aligned_cols=99  Identities=26%  Similarity=0.440  Sum_probs=79.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe--EEEEcchHHHHhcCCCceeEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv--~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      -..+++|||+-|.+.+.+... ++.+++.+|.+..|++.|+.-        ++|.+  ....+| .+++....+++|+|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DLii  142 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDLII  142 (325)
T ss_pred             CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhhhh
Confidence            457999999999999999886 588999999999999999874        34554  456677 677776678999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +....+|...    |  +..+.+ ++..|||+|.++..
T Consensus       143 sSlslHW~Nd----L--Pg~m~~-ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  143 SSLSLHWTND----L--PGSMIQ-CKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhcc----C--chHHHH-HHHhcCCCccchhH
Confidence            9988777421    2  356677 59999999999854

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.33  E-value=4.4e-07  Score=67.89  Aligned_cols=97  Identities=22%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             EEEecCchHHHHHHHhcC-CC--cEEEEEECChH---HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-CceeEE
Q 025534          107 FIMGGGEGSTAREILRHK-TV--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI  179 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~-~~--~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~~fD~I  179 (251)
                      |+||+..|..+..+++.. ..  .++++||..+.   .-+..++ ..      ...+++++.+|..+.+.... ++||+|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence            689999999888777642 22  37999999995   3333333 11      23579999999999887654 899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++|..+..       -.....++. +.++|+|||++++.
T Consensus        74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d  104 (106)
T PF13578_consen   74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence            99975321       123456777 68999999999874

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.31  E-value=3.6e-06  Score=74.57  Aligned_cols=77  Identities=23%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC---cee
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~---~fD  177 (251)
                      ++..++|++||.|+-+..+++..+ ..+|+++|.||++++.|++.+..      ..+++++++|..++.....+   ++|
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD   92 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD   92 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence            346899999999999999998743 46999999999999999987532      25899999999988643322   799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      .|++|+-
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9999973

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.27  E-value=6.6e-06  Score=81.21  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=75.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-----C-------------------------------------CCcEEEEEECChHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-----K-------------------------------------TVEKVVMCDIDEEVV  139 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-----~-------------------------------------~~~~v~~VEid~~vi  139 (251)
                      ....++|.+||+|+++.+++..     +                                     ...+++++|+|++++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            3578999999999999887642     0                                     013699999999999


Q ss_pred             HHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC---CCCcEE
Q 025534          140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL---NPEGIF  215 (251)
Q Consensus       140 ~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L---~pgG~l  215 (251)
                      +.|++++...+   ...++++..+|+.+..... .++||+|++|||.....+.  .-...++|+. +-+.|   .+|+.+
T Consensus       270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~--~~~l~~lY~~-lg~~lk~~~~g~~~  343 (702)
T PRK11783        270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE--EPALIALYSQ-LGRRLKQQFGGWNA  343 (702)
T ss_pred             HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--hHHHHHHHHH-HHHHHHHhCCCCeE
Confidence            99999987654   2457999999998864221 2579999999985332111  1112344444 33333   378777


Q ss_pred             EEec
Q 025534          216 VTQA  219 (251)
Q Consensus       216 ~~~~  219 (251)
                      ++-+
T Consensus       344 ~llt  347 (702)
T PRK11783        344 ALFS  347 (702)
T ss_pred             EEEe
Confidence            6654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.26  E-value=1.2e-06  Score=78.80  Aligned_cols=113  Identities=23%  Similarity=0.275  Sum_probs=70.3

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCC-----CCCeEEEEcchHHH-Hhc--
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARAE-LES--  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-----~~rv~~~~~D~~~~-l~~--  171 (251)
                      ++.+|||||||-|+ +.++...  ++..++++||+++.|+.|++... +......     .=...++.+|...- +..  
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            56899999999776 5555443  46899999999999999998762 1111000     11356788887532 221  


Q ss_pred             --CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          172 --RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       172 --~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                        ...+||+|-+-..-|.....  .-..+.+++. +..+|+|||.++.-+
T Consensus       140 ~~~~~~FDvVScQFalHY~Fes--e~~ar~~l~N-vs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFES--EEKARQFLKN-VSSLLKPGGYFIGTT  186 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cccCCCcceeehHHHHHHhcCC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence              12599999998654331111  1123568898 799999999998654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.26  E-value=5.8e-06  Score=73.39  Aligned_cols=102  Identities=20%  Similarity=0.321  Sum_probs=76.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ..+-|||+|||+|.++..++.. ++++|.+||.+ +|.+.||+...-|.   ...|+.++.|-..+.  ..+++.|+||+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEdi--eLPEk~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIEDI--ELPEKVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCccccc--cCchhccEEEe
Confidence            3577999999999999988875 67899999996 47788888776442   457999999987664  34689999999


Q ss_pred             cCCCCCCCCcccCCccH---HHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~---ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+-.       .-|+.+   |-|-. .++.|+|.|.+.--
T Consensus       250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPT  281 (517)
T ss_pred             ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence            8642       123333   44555 58999999988643

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.25  E-value=2.2e-06  Score=69.19  Aligned_cols=81  Identities=10%  Similarity=-0.024  Sum_probs=57.8

Q ss_pred             EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC
Q 025534          130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL  209 (251)
Q Consensus       130 ~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L  209 (251)
                      +++|+++.|++.|++........ ..++++++++|+.+. ...+++||+|++...-++..      ...+++++ ++++|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~------d~~~~l~e-i~rvL   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV------DRLRAMKE-MYRVL   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC------CHHHHHHH-HHHHc
Confidence            58999999999998765422100 125799999998774 44457899999864332211      13578899 79999


Q ss_pred             CCCcEEEEec
Q 025534          210 NPEGIFVTQA  219 (251)
Q Consensus       210 ~pgG~l~~~~  219 (251)
                      ||||.+++..
T Consensus        72 kpGG~l~i~d   81 (160)
T PLN02232         72 KPGSRVSILD   81 (160)
T ss_pred             CcCeEEEEEE
Confidence            9999987653

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.25  E-value=4e-06  Score=72.42  Aligned_cols=78  Identities=19%  Similarity=0.306  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.-||++|.|+|.++..++...  ++|+++|+||.|+....+.+.-..   ...+++++++|.   +...-..||.+|
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV  128 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV  128 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence            345679999999999999999863  699999999999999888775322   247899999995   433347899999


Q ss_pred             EcCCCC
Q 025534          181 GDLADP  186 (251)
Q Consensus       181 ~D~~~~  186 (251)
                      .+.|..
T Consensus       129 sNlPyq  134 (315)
T KOG0820|consen  129 SNLPYQ  134 (315)
T ss_pred             ccCCcc
Confidence            998743

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.23  E-value=6.8e-06  Score=80.67  Aligned_cols=113  Identities=15%  Similarity=0.104  Sum_probs=77.5

Q ss_pred             CCeEEEEecCchHHHHHHHhc--------CC----CcEEEEEECChH---HHHHHHhchhc----------------cc-
Q 025534          103 PKTIFIMGGGEGSTAREILRH--------KT----VEKVVMCDIDEE---VVEFCKSYLVV----------------NK-  150 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~--------~~----~~~v~~VEid~~---vi~~a~~~~~~----------------~~-  150 (251)
                      .-+|||+|.|+|.....+++.        ++    .-+++.+|..|-   -+..+-+.++.                .+ 
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            368999999999855444321        11    237899998652   22222111110                00 


Q ss_pred             --CCCCCC--CeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          151 --EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       151 --~~~~~~--rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                        -.+.+.  +++++.+|+++.+.+...++|+|++|.|.|.. +|  .+++.++|+. ++++++|||++++.+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence              011223  45688999999998766779999999998863 44  6999999999 899999999999764

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.22  E-value=1.9e-06  Score=76.75  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-------CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-C
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~  173 (251)
                      +..+|||..||+|+++.++.++       ....++.++|+|+.++.+|+-++.+.+.  ......+..+|.+..-... .
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSCTST
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccccccccccc
Confidence            4567999999999998887762       1346899999999999999987654321  1234568899975443222 4


Q ss_pred             CceeEEEEcCCCCCC--CCc---ccC----------CccHHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADPIE--GGP---CYK----------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~--~~p---~~~----------l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++||+|+++||-...  ..+   ...          -....|++. +.+.|++||++++-.
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAIIL  183 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEEe
Confidence            689999999983211  000   000          011247788 688999999876543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2.1e-06  Score=67.54  Aligned_cols=92  Identities=17%  Similarity=0.069  Sum_probs=66.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..++++++||||.|.+...... ++...|.++||||+.++.++++.....     -++.+.+.|..+.... .+.||..+
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~~-~g~fDtav  119 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLELK-GGIFDTAV  119 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhcc-CCeEeeEE
Confidence            4678999999999999965544 566899999999999999999865321     2457777776554332 48999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHH
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEF  203 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~  203 (251)
                      .|++....    ..-.+-+|.+.
T Consensus       120 iNppFGTk----~~~aDm~fv~~  138 (185)
T KOG3420|consen  120 INPPFGTK----KKGADMEFVSA  138 (185)
T ss_pred             ecCCCCcc----cccccHHHHHH
Confidence            99875331    11234566665

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=4.6e-05  Score=69.40  Aligned_cols=138  Identities=16%  Similarity=0.118  Sum_probs=93.5

Q ss_pred             hcCC-CCCeEEEEecCchHHHHHHHhcCC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-
Q 025534           98 LHHP-NPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-  173 (251)
Q Consensus        98 ~~~~-~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-  173 (251)
                      .+.+ ++.+|||++.+.|+=+.+++....  ...|+++|+++.=++..++++.-.+    -.++.++..|++.+..... 
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~  226 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPG  226 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccc
Confidence            3444 458999999999998777777533  2457999999999999999876442    2458899999887654432 


Q ss_pred             -CceeEEEEcCCCCCC----CCccc------------CCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025534          174 -ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (251)
Q Consensus       174 -~~fD~Ii~D~~~~~~----~~p~~------------~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~  236 (251)
                       ++||.|++|+|....    ..|..            .-+..+++.. +.+.|||||+|+.-+++.    .++....+.+
T Consensus       227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~vV~  301 (355)
T COG0144         227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEVVE  301 (355)
T ss_pred             cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHHHH
Confidence             369999999984322    11210            0113567777 689999999999766543    2444455555


Q ss_pred             HHHhhCCc
Q 025534          237 TLRQVFKC  244 (251)
Q Consensus       237 ~l~~~F~~  244 (251)
                      .+-+..+.
T Consensus       302 ~~L~~~~~  309 (355)
T COG0144         302 RFLERHPD  309 (355)
T ss_pred             HHHHhCCC
Confidence            54444433

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.19  E-value=5.8e-06  Score=79.01  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC--------CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH----
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL----  169 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l----  169 (251)
                      ...+|||.|||+|.+...++++..        ...++++|+|+.+++.++..+...+    ...+++..+|.....    
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence            346899999999999887765321        1478999999999999998875432    123566666644321    


Q ss_pred             hcCCCceeEEEEcCCC
Q 025534          170 ESRKESYDVIIGDLAD  185 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~  185 (251)
                      ....++||+||.|||-
T Consensus       107 ~~~~~~fD~IIgNPPy  122 (524)
T TIGR02987       107 ESYLDLFDIVITNPPY  122 (524)
T ss_pred             ccccCcccEEEeCCCc
Confidence            1123589999999983

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.18  E-value=4.6e-05  Score=63.06  Aligned_cols=113  Identities=22%  Similarity=0.357  Sum_probs=78.3

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+++|||+|+|.  +...++.  +..+++.||.+..=+...+.-....+    -++++++++.+.+  .....+||+|++
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~--~~~~~~fd~v~a  121 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRELG----LSNVEVINGRAEE--PEYRESFDVVTA  121 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--TTTTT-EEEEEE
T ss_pred             ceEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHhC----CCCEEEEEeeecc--cccCCCccEEEe
Confidence            389999999996  4444444  44689999999998888776654332    3579999999988  345689999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      =+..+.          ..+++. +...|++||.++..-++.    ..+.+....+.+.
T Consensus       122 RAv~~l----------~~l~~~-~~~~l~~~G~~l~~KG~~----~~~El~~~~~~~~  164 (184)
T PF02527_consen  122 RAVAPL----------DKLLEL-ARPLLKPGGRLLAYKGPD----AEEELEEAKKAWK  164 (184)
T ss_dssp             ESSSSH----------HHHHHH-HGGGEEEEEEEEEEESS------HHHHHTHHHHHH
T ss_pred             ehhcCH----------HHHHHH-HHHhcCCCCEEEEEcCCC----hHHHHHHHHhHHH
Confidence            876432          366777 689999999999876642    2344444444444

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.17  E-value=4e-06  Score=68.79  Aligned_cols=124  Identities=18%  Similarity=0.273  Sum_probs=68.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-----HHHHhc----
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES----  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-----~~~l~~----  171 (251)
                      .+.+||||||+.|+.+..++++. ...+|.+||+.+.      .         ..+.+..+.+|.     .+.+..    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~---------~~~~~~~i~~d~~~~~~~~~i~~~~~~   87 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D---------PLQNVSFIQGDITNPENIKDIRKLLPE   87 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G---------S-TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c---------cccceeeeecccchhhHHHhhhhhccc
Confidence            56899999999999999999875 3579999999987      1         012333333332     222222    


Q ss_pred             CCCceeEEEEcCCCCCCCCcc-cCCc----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          172 RKESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~-~~l~----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      ..+++|+|++|........+. .+..    ....+.. +.+.|+|||.+++..-.     .... ..++..++..|..+.
T Consensus        88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~-a~~~L~~gG~~v~K~~~-----~~~~-~~~~~~l~~~F~~v~  160 (181)
T PF01728_consen   88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLL-ALELLKPGGTFVIKVFK-----GPEI-EELIYLLKRCFSKVK  160 (181)
T ss_dssp             TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHH-HHHHHCTTEEEEEEESS-----STTS-HHHHHHHHHHHHHEE
T ss_pred             cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHH-HHhhhcCCCEEEEEecc-----CccH-HHHHHHHHhCCeEEE
Confidence            236899999998422211110 0000    1122223 35789999988886522     1122 255555666665554


Q ss_pred             e
Q 025534          247 N  247 (251)
Q Consensus       247 ~  247 (251)
                      .
T Consensus       161 ~  161 (181)
T PF01728_consen  161 I  161 (181)
T ss_dssp             E
T ss_pred             E
Confidence            3

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04148 hypothetical protein; Provisional

Probab=98.12  E-value=6.9e-06  Score=64.29  Aligned_cols=70  Identities=21%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+||+||||.|. ++..|.+. + .+|+++|+|+..++.+++.           .++++.+|.++-=...-+.+|+|.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~-G-~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES-G-FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEEE
Confidence            45789999999996 77777765 4 5999999999999988864           367888887653212236799999


Q ss_pred             EcCC
Q 025534          181 GDLA  184 (251)
Q Consensus       181 ~D~~  184 (251)
                      +--+
T Consensus        83 sirp   86 (134)
T PRK04148         83 SIRP   86 (134)
T ss_pred             EeCC
Confidence            8643

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.08  E-value=1.3e-05  Score=73.48  Aligned_cols=104  Identities=29%  Similarity=0.346  Sum_probs=77.5

Q ss_pred             CCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +-+|||.=+|+|.=+...++. .+..+|++-|+|++.+++.++++.+|+.  .+.++++.+.|+...+....+.||+|=+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999999999976555554 6678999999999999999999988752  2238999999999988655689999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+.    .|      ..|+.. +.+.++.||+|.+-.
T Consensus       128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence            9984    33      268888 678999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=98.05  E-value=1e-05  Score=62.66  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=47.5

Q ss_pred             CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       156 ~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -+++++.+|+++.+++...++|+|+.|.|.|.. +|  .+++.++++. +.++++|||++++.+
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys   90 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYS   90 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES-
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEee
Confidence            356889999999998877899999999998763 44  6999999999 899999999999864

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.03  E-value=5.9e-06  Score=67.82  Aligned_cols=99  Identities=22%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      ..+.|+|.|+|.++..+++.  +.+|.++|.||...++|++++..++    +.+++++.+|++.|=   -+.-|+|+|..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~---fe~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYD---FENADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEeccccccc---ccccceeHHHH
Confidence            56899999999999887775  4799999999999999999987664    578999999999872   16789999876


Q ss_pred             CCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          184 ADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       184 ~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .|.... .+     ....+.. +.+-|+.++.++-
T Consensus       105 lDTaLi~E~-----qVpV~n~-vleFLr~d~tiiP  133 (252)
T COG4076         105 LDTALIEEK-----QVPVINA-VLEFLRYDPTIIP  133 (252)
T ss_pred             hhHHhhccc-----ccHHHHH-HHHHhhcCCcccc
Confidence            542210 11     1245566 4567888888874

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.03  E-value=1.1e-05  Score=70.46  Aligned_cols=76  Identities=24%  Similarity=0.410  Sum_probs=61.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~I  179 (251)
                      +...|||||.|.|.++..++++.  .++++||+|+..++..++.+.      .+++++++.+|+.++-...  ......|
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v  101 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV  101 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence            56889999999999999999975  799999999999999998765      2579999999998763211  2356788


Q ss_pred             EEcCCC
Q 025534          180 IGDLAD  185 (251)
Q Consensus       180 i~D~~~  185 (251)
                      +.+.|.
T Consensus       102 v~NlPy  107 (262)
T PF00398_consen  102 VGNLPY  107 (262)
T ss_dssp             EEEETG
T ss_pred             EEEecc
Confidence            888763

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.02  E-value=3e-05  Score=67.96  Aligned_cols=108  Identities=18%  Similarity=0.284  Sum_probs=64.0

Q ss_pred             CCCeEEEEecCchHHHH-HHHh-cCCCcEEEEEECChHHHHHHHhchh-cccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~-~l~~-~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .|++|+-||+|.==++. .+++ +.....|+++|+||+.++.+++-.. ..+   ...+++++.+|+.+.-.. -..||+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~d-l~~~Dv  195 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTYD-LKEYDV  195 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-GG-----SE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhccccc-cccCCE
Confidence            46799999999765544 4443 3334689999999999999998765 222   246899999998764322 268999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++.+.-.....+     -.+.++. +.++++||.++++..
T Consensus       196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS  230 (276)
T ss_dssp             EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred             EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence            9998764221123     3578898 799999999999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.02  E-value=3.5e-05  Score=65.86  Aligned_cols=40  Identities=15%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF  141 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~  141 (251)
                      .+.++|||+|||+|.++..+++. ++.+|++||+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            35678999999999999999997 56799999999977664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.99  E-value=0.00013  Score=63.87  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~  175 (251)
                      ...|-+||||.||.|-....++...+  ..+|...|.++..++..++.....+   -..-+++.++|+++.  +.....+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence            35688999999999998877766433  3689999999999999998876443   234459999999886  3334567


Q ss_pred             eeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          176 YDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       176 fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      .|++++.-- +-.   |.+.+ -..-+.. +.+.+.|||.++ .++.|  |++  .+.-|...|.+
T Consensus       210 P~l~iVsGL~ElF---~Dn~l-v~~sl~g-l~~al~pgG~lI-yTgQP--wHP--Qle~IAr~Lts  265 (311)
T PF12147_consen  210 PTLAIVSGLYELF---PDNDL-VRRSLAG-LARALEPGGYLI-YTGQP--WHP--QLEMIARVLTS  265 (311)
T ss_pred             CCEEEEecchhhC---CcHHH-HHHHHHH-HHHHhCCCcEEE-EcCCC--CCc--chHHHHHHHhc
Confidence            888887642 211   10111 1234566 688999999887 56666  643  24445555544

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=6.6e-05  Score=67.58  Aligned_cols=102  Identities=25%  Similarity=0.317  Sum_probs=82.4

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||-=+|+|.=+...+..-+..+|+.-|+||..++++++++..|.    .....++..|+-.++.+....||+|=+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence            789999999999976555554343489999999999999999999872    3456777799999998767899999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||.    .|.      +|+.. +.+..+.+|++.+-.
T Consensus       129 PFG----SPa------PFlDa-A~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PFG----SPA------PFLDA-ALRSVRRGGLLCVTA  154 (380)
T ss_pred             CCC----CCc------hHHHH-HHHHhhcCCEEEEEe
Confidence            984    343      67777 678888899998754

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.91  E-value=0.00017  Score=63.75  Aligned_cols=136  Identities=14%  Similarity=0.090  Sum_probs=93.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~  178 (251)
                      .+..+|||++++.|+=+.+++.. .....|+++|+++.=+...++++...+    ..++.+...|+..+.... ...||.
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~  159 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDR  159 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccch
Confidence            34578999999999987777765 324699999999999999998876432    357888889999885433 346999


Q ss_pred             EEEcCCCCCC----CCccc------------CCccHHHHHHHHcccC----CCCcEEEEecCCCCCCCChHHHHHHHHHH
Q 025534          179 IIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (251)
Q Consensus       179 Ii~D~~~~~~----~~p~~------------~l~~~ef~~~~~~~~L----~pgG~l~~~~~~p~~~~~~~~~~~i~~~l  238 (251)
                      |++|+|....    ..|..            .-...+.++. +.+.+    +|||+++--+++   +. ++....+.+.+
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS---~~-~eENE~vV~~f  234 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS---LS-PEENEEVVEKF  234 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH---HH-GGGTHHHHHHH
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc---HH-HHHHHHHHHHH
Confidence            9999984322    11210            0012567777 68899    999999876653   22 33344555555


Q ss_pred             HhhCCce
Q 025534          239 RQVFKCG  245 (251)
Q Consensus       239 ~~~F~~v  245 (251)
                      -+.+|..
T Consensus       235 l~~~~~~  241 (283)
T PF01189_consen  235 LKRHPDF  241 (283)
T ss_dssp             HHHSTSE
T ss_pred             HHhCCCc
Confidence            4445543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.90  E-value=0.00014  Score=61.46  Aligned_cols=122  Identities=19%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHH----HHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~  173 (251)
                      .++.+||-||..+|.+..+++.. .+...|.+||.+|..    +++|++          .+|+--+.+||+..-+-  .-
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv  141 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV  141 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence            34689999999999999999885 334689999999954    555554          36888899999864321  23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec--CCCCC-CCChHHHHHHHHHHHhh
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~--~~p~~-~~~~~~~~~i~~~l~~~  241 (251)
                      +..|+|+.|...|.        .++-+... ++.-||+||.+++-.  .+-.. ..+...++...+.|++.
T Consensus       142 ~~VDvI~~DVaQp~--------Qa~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~  203 (229)
T PF01269_consen  142 EMVDVIFQDVAQPD--------QARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEE  203 (229)
T ss_dssp             --EEEEEEE-SSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCT
T ss_pred             ccccEEEecCCChH--------HHHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHc
Confidence            68999999987543        12334555 567899999777532  11110 23456888889999874

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.89  E-value=2.1e-05  Score=69.58  Aligned_cols=113  Identities=14%  Similarity=0.156  Sum_probs=76.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCC----CeEEEEcchHHHH-hc----
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP----RLELVINDARAEL-ES----  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~----rv~~~~~D~~~~l-~~----  171 (251)
                      ++...+|+||||-|+-+....+. +...++++||...-|+.|++.......  ...    .+.++.+|...-. ..    
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~--r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKN--RFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHh--hhhcccceeEEEEeccchhHHHHhccC
Confidence            56678999999999977665553 577999999999999999987642110  011    3688999976532 11    


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+.+||+|-+....|.....  .-...-+++. +.++|+|||+++--.
T Consensus       193 ~dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI  237 (389)
T ss_pred             CCCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence            23449999987654431111  0112346777 689999999998643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.86  E-value=0.00013  Score=61.02  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=62.6

Q ss_pred             CCCeEEEEecCchH----HHHHHHh---c-CC-CcEEEEEECChHHHHHHHhc------------------h-hcccCCC
Q 025534          102 NPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF  153 (251)
Q Consensus       102 ~~~~VL~iG~G~G~----~~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------~-~~~~~~~  153 (251)
                      .+-||+-.||++|-    ++..+..   . .+ .-+|++.|||+.+++.|++-                  | ...++.+
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            46789999999996    3333333   1 11 24899999999999999862                  1 1111111


Q ss_pred             C-----CCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          154 S-----DPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       154 ~-----~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .     ..+|++...|..+ .....++||+|+|---- -.  .+   -.....++. +.+.|+|||.|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF--~~---~~~~~vl~~-l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF--DP---ETQQRVLRR-LHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS---H---HHHHHHHHH-HGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe--CH---HHHHHHHHH-HHHHcCCCCEEEEec
Confidence            1     2478888888877 12235789999996320 00  11   113567787 799999999998743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.83  E-value=0.00016  Score=60.58  Aligned_cols=132  Identities=15%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHh---cCCCceeEEE
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKESYDVII  180 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~---~~~~~fD~Ii  180 (251)
                      +||+||+|+|.-+.+++++.+.-+..--|.++......+.+....+.....+-+.+-..+. ..+..   ...+.||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999887665678889999998776666654221100112233322222 22210   1246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC---CChHHHHHHHHHHHhhCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~---~~~~~~~~i~~~l~~~F~  243 (251)
                      +--.-|.  .| + -.+..+|+. +.++|++||.|++..  |-..   ...+...++-..||+.-|
T Consensus       108 ~~N~lHI--~p-~-~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp  166 (204)
T PF06080_consen  108 CINMLHI--SP-W-SAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP  166 (204)
T ss_pred             ehhHHHh--cC-H-HHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence            8755333  12 1 124678888 799999999999875  2001   124556666677776544

The function of this family is unknown.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.82  E-value=0.00014  Score=65.35  Aligned_cols=115  Identities=11%  Similarity=0.068  Sum_probs=75.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.++||||+++|+.+..++++ + .+|++||..+..-. .          ..+++|+.+.+|++.+... .+.+|+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r-G-~~V~AVD~g~l~~~-L----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR-G-MFVTAVDNGPMAQS-L----------MDTGQVEHLRADGFKFRPP-RKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc-C-CEEEEEechhcCHh-h----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence            35689999999999999999997 4 49999996552211 1          1468999999999998643 57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCC--cEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg--G~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +|...    .|.      ...+. +.+.|..|  ...++|.--|. ..+.+..+..++.+.+.
T Consensus       276 cDmve----~P~------rva~l-m~~Wl~~g~cr~aIfnLKlpm-k~r~~~v~~~l~~i~~~  326 (357)
T PRK11760        276 CDMVE----KPA------RVAEL-MAQWLVNGWCREAIFNLKLPM-KKRYEEVRQCLELIEEQ  326 (357)
T ss_pred             Eeccc----CHH------HHHHH-HHHHHhcCcccEEEEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence            99863    331      33444 45555544  24455543231 33444455555555543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.82  E-value=5.6e-05  Score=66.05  Aligned_cols=111  Identities=20%  Similarity=0.218  Sum_probs=77.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc----c--------c---C---------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----N--------K---E---------------  151 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~----~--------~---~---------------  151 (251)
                      .+.+||+-|||.|-++.++++. + -.+.+.|.|--|+=..+--+..    +        .   .               
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            3578999999999999999997 4 5899999999886543321110    0        0   0               


Q ss_pred             ------CCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       152 ------~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                            .....++.+..||..++....  .++||+|+..-|-..    +..+  .++++. +.++||||| +.+|.||.
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni--~~Yi~t-I~~lLkpgG-~WIN~GPL  204 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENI--IEYIET-IEHLLKPGG-YWINFGPL  204 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHH--HHHHHH-HHHHhccCC-EEEecCCc
Confidence                  012347889999988876443  479999998755222    1122  378888 799999999 55688765

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.78  E-value=2.4e-05  Score=66.59  Aligned_cols=107  Identities=24%  Similarity=0.340  Sum_probs=70.2

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCC--cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-Hhc--CCCcee
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~--~~~~fD  177 (251)
                      +.++|++|||.|.+..-+++..+.  -.|.++|.+|.++++.+++-..+     ..++....-|.-.- +..  ..+.+|
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~svD  146 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSVD  146 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCccc
Confidence            447999999999999888886444  58999999999999999875433     23444433333211 111  246789


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++----.. ..| +..  ...+.. +.++|||||.+++-.
T Consensus       147 ~it~IFvLSA-i~p-ek~--~~a~~n-l~~llKPGG~llfrD  183 (264)
T KOG2361|consen  147 IITLIFVLSA-IHP-EKM--QSVIKN-LRTLLKPGGSLLFRD  183 (264)
T ss_pred             eEEEEEEEec-cCh-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence            7766421100 012 111  356777 699999999998753

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00017  Score=60.44  Aligned_cols=126  Identities=21%  Similarity=0.278  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-----HHhc-C-
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-R-  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-----~l~~-~-  172 (251)
                      .+..+|+|||+.-|+.+..+++.-+ ...|++||+.|.-               ..+++.++.+|..+     -+.. . 
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            4578999999999999999888633 2359999998742               23568888887653     1211 1 


Q ss_pred             CCceeEEEEcCCCCCCCCc-ccCCcc----HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          173 KESYDVIIGDLADPIEGGP-CYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p-~~~l~~----~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      ..+.|+|++|......... ..+..+    ...++. +...|+|||.+++..     + ..+....+++.++..|..|..
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~-----f-qg~~~~~~l~~~~~~F~~v~~  181 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV-----F-QGEDFEDLLKALRRLFRKVKI  181 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE-----E-eCCCHHHHHHHHHHhhceeEE
Confidence            3457999999864221111 011111    112232 358999999998764     2 233456888888888888765


Q ss_pred             e
Q 025534          248 L  248 (251)
Q Consensus       248 ~  248 (251)
                      +
T Consensus       182 ~  182 (205)
T COG0293         182 F  182 (205)
T ss_pred             e
Confidence            4

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.65  E-value=0.00041  Score=59.37  Aligned_cols=99  Identities=24%  Similarity=0.313  Sum_probs=55.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I  179 (251)
                      ..+++||.+|=.+-......+... .++|+++|||+++++..++.....+     -+++.++.|.++-+... .++||++
T Consensus        43 L~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             STT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEE
T ss_pred             ccCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEE
Confidence            357999999987776544444433 3799999999999999988766442     24999999999988653 5899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCc
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG  213 (251)
                      +.|||.-.. +  ..    -|... .-..||..|
T Consensus       117 ~TDPPyT~~-G--~~----LFlsR-gi~~Lk~~g  142 (243)
T PF01861_consen  117 FTDPPYTPE-G--LK----LFLSR-GIEALKGEG  142 (243)
T ss_dssp             EE---SSHH-H--HH----HHHHH-HHHTB-STT
T ss_pred             EeCCCCCHH-H--HH----HHHHH-HHHHhCCCC
Confidence            999874210 1  12    35555 356677766

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.63  E-value=0.00021  Score=64.94  Aligned_cols=111  Identities=22%  Similarity=0.159  Sum_probs=79.5

Q ss_pred             CCeEEEEecCchHHHHHHHhcCC--------------------------------Cc-------EEEEEECChHHHHHHH
Q 025534          103 PKTIFIMGGGEGSTAREILRHKT--------------------------------VE-------KVVMCDIDEEVVEFCK  143 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~--------------------------------~~-------~v~~VEid~~vi~~a~  143 (251)
                      ....+|-=||+|+++.+++-...                                .+       .+.++|+|+.+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            36799999999999988876431                                01       3779999999999999


Q ss_pred             hchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCc---ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       144 ~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p---~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .|....+   ....+++..+|+..+-... +.+|+||+|||.....+.   ...|| ++|-+. +++.++--+.+++-+
T Consensus       272 ~NA~~AG---v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~tt  344 (381)
T COG0116         272 ANARAAG---VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHhcC---CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEEc
Confidence            9976443   3568999999988763222 789999999985432111   11233 466666 678888777777643

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.62  E-value=0.00032  Score=59.10  Aligned_cols=101  Identities=20%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~  178 (251)
                      .+..|+|.-||.|+.+...+.+.  ..|.+||+||.-|.+|+++++.-+   -..|+++++||..+.....   ...+|+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhheeee
Confidence            56778888888777776666654  489999999999999999987654   2349999999998876542   345778


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~  214 (251)
                      ++..++  |. +|.  ....+.|.  +..++.|.|.
T Consensus       169 vf~spp--wg-gp~--y~~~~~~D--L~~~~~p~~~  197 (263)
T KOG2730|consen  169 VFLSPP--WG-GPS--YLRADVYD--LETHLKPMGT  197 (263)
T ss_pred             eecCCC--CC-Ccc--hhhhhhhh--hhhhcchhHH
Confidence            777654  42 442  12233343  3566666654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.59  E-value=0.00057  Score=57.52  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |.||||--|.++.+|++...+.+++++|+++.-++.|+++....+   ...+++++.+|+.+.+.. ++..|.|++.   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIA---   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIA---   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEE---
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEe---
Confidence            689999999999999998767789999999999999999987543   347999999999998743 3447999987   


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                          +... ....++++. ....++..-.|+++-
T Consensus        74 ----GMGG-~lI~~ILe~-~~~~~~~~~~lILqP  101 (205)
T PF04816_consen   74 ----GMGG-ELIIEILEA-GPEKLSSAKRLILQP  101 (205)
T ss_dssp             ----EE-H-HHHHHHHHH-TGGGGTT--EEEEEE
T ss_pred             ----cCCH-HHHHHHHHh-hHHHhccCCeEEEeC
Confidence                3322 224566776 466676666788763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.57  E-value=0.00013  Score=64.61  Aligned_cols=80  Identities=16%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             CCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc----hHHHHhcCCCcee
Q 025534          103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELESRKESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D----~~~~l~~~~~~fD  177 (251)
                      .-++||||+|.-.+ +....+..+ -++++.|||+..++.|+++...|..  ...+|+++...    .+..+....+.||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence            46899999998876 343344444 5999999999999999999987621  35789887653    2222333457999


Q ss_pred             EEEEcCCC
Q 025534          178 VIIGDLAD  185 (251)
Q Consensus       178 ~Ii~D~~~  185 (251)
                      +.+|+||.
T Consensus       180 ftmCNPPF  187 (299)
T PF05971_consen  180 FTMCNPPF  187 (299)
T ss_dssp             EEEE----
T ss_pred             EEecCCcc
Confidence            99999973

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.56  E-value=0.00058  Score=57.46  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=59.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCCCCCCeEEEEcchHHH--HhcCCC
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAE--LESRKE  174 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~~~rv~~~~~D~~~~--l~~~~~  174 (251)
                      +..-.+|||+|.|-....++...+..+..+||+.+...+.|++.....     .-.....++++..+|..+.  ....-.
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s  121 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS  121 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence            456799999999998877765556678999999999999887643210     0012346889999997543  221114


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .-|+|+++.+.-   .+  .+  ...+.. ....||+|-+++.
T Consensus       122 ~AdvVf~Nn~~F---~~--~l--~~~L~~-~~~~lk~G~~IIs  156 (205)
T PF08123_consen  122 DADVVFVNNTCF---DP--DL--NLALAE-LLLELKPGARIIS  156 (205)
T ss_dssp             C-SEEEE--TTT----H--HH--HHHHHH-HHTTS-TT-EEEE
T ss_pred             CCCEEEEecccc---CH--HH--HHHHHH-HHhcCCCCCEEEE
Confidence            579999986521   11  01  122333 3467888877764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.55  E-value=0.00011  Score=64.98  Aligned_cols=112  Identities=17%  Similarity=0.169  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCchH----HHHHHHhc----CCCcEEEEEECChHHHHHHHhch------------------hcc-c--CC
Q 025534          102 NPKTIFIMGGGEGS----TAREILRH----KTVEKVVMCDIDEEVVEFCKSYL------------------VVN-K--EA  152 (251)
Q Consensus       102 ~~~~VL~iG~G~G~----~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~------------------~~~-~--~~  152 (251)
                      .+-||+..||.+|-    ++..+...    ...-+|++.|||+.+++.|++-.                  ... +  +.
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34699999999996    33333332    11247999999999999998731                  100 0  00


Q ss_pred             -C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          153 -F-----SDPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       153 -~-----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +     -..+|++...|..+.-....++||+|+|-. .-..  .+   -.....++. +.+.|+|||.|++-.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEeC
Confidence             0     114566777776542101136899999942 2111  11   123567888 799999999988743

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.51  E-value=0.00031  Score=54.92  Aligned_cols=56  Identities=16%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~  165 (251)
                      +||+|||.|..+..+++..+..+|+++|.+|.+.+.+++++..++    -++++++....
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~al   57 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAAV   57 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEeee
Confidence            799999999999998887554589999999999999999987653    24577777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.0021  Score=53.54  Aligned_cols=127  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~  178 (251)
                      ..+.+||-||..+|.+..+++.--+...|.+||.+|++.+-.-   ....   ..+|+-=+.+||+.--+  ..-+..|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl---~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL---DVAE---KRPNIIPILEDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH---HHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence            4578999999999999999998755568999999998765322   2111   24677778888864321  12367999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCc--EEEEecCCCCC-CCChHHHHHHHHHHHhhC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGI-FSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG--~l~~~~~~p~~-~~~~~~~~~i~~~l~~~F  242 (251)
                      |+.|...|..        +.=+... +..-|+++|  ++++...+-.+ ....+.+++..+.|++-+
T Consensus       149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~  206 (231)
T COG1889         149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG  206 (231)
T ss_pred             EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence            9999875541        1234445 578899999  55555443221 123467887888888764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=0.00065  Score=57.48  Aligned_cols=100  Identities=19%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             CCeEEEEecCchHHHHHHH-hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +++++|||+|.|.=+.-++ -.+. .+||.+|.+..=+...++-....    .-++++++++.+.++-.+... ||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~~~-~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEKKQ-YDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccccc-CcEEEe
Confidence            6899999999996333332 2344 56999999998887776654322    346899999999988532222 999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -+..+.          ..+.+- +...+++||.+++.-
T Consensus       142 RAva~L----------~~l~e~-~~pllk~~g~~~~~k  168 (215)
T COG0357         142 RAVASL----------NVLLEL-CLPLLKVGGGFLAYK  168 (215)
T ss_pred             ehccch----------HHHHHH-HHHhcccCCcchhhh
Confidence            876432          134455 578999999876543

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.37  E-value=0.00046  Score=61.84  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      ...+|+|+|.|.+++.++.+++  +|.+++.|..-+..++.++.        |.|+.+.+|+++-+    .+-|+|++-.
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~----P~~daI~mkW  244 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT----PKGDAIWMKW  244 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC----CCcCeEEEEe
Confidence            6789999999999999998654  69999999888887777642        34888999976642    3456999875


Q ss_pred             C-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          184 A-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       184 ~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      - .+|.+.   .  -..|++. +++.|+|+|.+++--
T Consensus       245 iLhdwtDe---d--cvkiLkn-C~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  245 ILHDWTDE---D--CVKILKN-CKKSLPPGGKIIVVE  275 (342)
T ss_pred             ecccCChH---H--HHHHHHH-HHHhCCCCCEEEEEe
Confidence            4 334211   1  1479999 599999999887643

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00028  Score=66.00  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-C---Cce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K---ESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~---~~f  176 (251)
                      +..+-+||+.||+|.++..+++.  +.+|.+||++|+.++-|+++...|+    -.+.+++++-+.+.+... .   ..=
T Consensus       382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCCC
Confidence            45578999999999999998885  5799999999999999999988774    468999999766655431 1   233


Q ss_pred             e-EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          177 D-VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       177 D-~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      + ++|+|++...   .     ...+++. +++.-++.=.+.+.++++      ...+.+...++..+
T Consensus       456 ~~v~iiDPpR~G---l-----h~~~ik~-l~~~~~~~rlvyvSCn~~------t~ar~v~~lc~~~~  507 (534)
T KOG2187|consen  456 TLVAIIDPPRKG---L-----HMKVIKA-LRAYKNPRRLVYVSCNPH------TAARNVIDLCSSPK  507 (534)
T ss_pred             ceEEEECCCccc---c-----cHHHHHH-HHhccCccceEEEEcCHH------HhhhhHHHhhcCcc
Confidence            4 7888887432   1     2345555 444444555554444322      11344555555444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.31  E-value=0.0015  Score=57.50  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-HHHhcCCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-~~l~~~~~~fD~I  179 (251)
                      .|++|||+|+|.|..+..+... +...++++||.++.++++++.-+....   ....... ..+.. +..  .-.+.|+|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~-~~~~~~~~~--~~~~~DLv  106 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEW-RRVLYRDFL--PFPPDDLV  106 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc---ccccchh-hhhhhcccc--cCCCCcEE
Confidence            5789999999999876655543 245689999999999999998654221   0111111 11110 111  11345999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++.-.-..  -+ . -...++.+. +.+.+++ =++++.-+.|   ..-+.+..+.+.|.+.
T Consensus       107 i~s~~L~E--L~-~-~~r~~lv~~-LW~~~~~-~LVlVEpGt~---~Gf~~i~~aR~~l~~~  159 (274)
T PF09243_consen  107 IASYVLNE--LP-S-AARAELVRS-LWNKTAP-VLVLVEPGTP---AGFRRIAEARDQLLEK  159 (274)
T ss_pred             EEehhhhc--CC-c-hHHHHHHHH-HHHhccC-cEEEEcCCCh---HHHHHHHHHHHHHhhC
Confidence            98632111  11 1 122456666 5566665 3444454544   2234555555555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.31  E-value=0.0024  Score=53.88  Aligned_cols=105  Identities=16%  Similarity=0.131  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++..++.||||--+.++.+|.+...+..++++|+++--++.|.++++.+.   ..+++++..+|+..-+. .++.+|+|+
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~-~~d~~d~iv   90 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLE-LEDEIDVIV   90 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccC-ccCCcCEEE
Confidence            45667999999999999999997677899999999999999999998664   46899999999977764 345799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +.-       ... ..=.+++++ -++.|+.-=.+++|
T Consensus        91 IAG-------MGG-~lI~~ILee-~~~~l~~~~rlILQ  119 (226)
T COG2384          91 IAG-------MGG-TLIREILEE-GKEKLKGVERLILQ  119 (226)
T ss_pred             EeC-------CcH-HHHHHHHHH-hhhhhcCcceEEEC
Confidence            873       211 223467777 57777754466665

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.00097  Score=62.63  Aligned_cols=105  Identities=18%  Similarity=0.342  Sum_probs=77.0

Q ss_pred             CeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHh-chhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..++++|+|-|-+....++.    ..--++.+||.||.++-..+. ++..    + +.+|+++..|.|.|-. +.++-|+
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W-~~~Vtii~~DMR~w~a-p~eq~DI  442 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----W-DNRVTIISSDMRKWNA-PREQADI  442 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----h-cCeeEEEeccccccCC-chhhccc
Confidence            34778999999887666552    112378999999999887664 2321    1 4799999999999963 2489999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++.+....  +  ..-.++|.+.. +.+.|||+|+.+-..
T Consensus       443 ~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  443 IVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS  478 (649)
T ss_pred             hHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence            999876443  2  12346888898 799999999987544

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.21  E-value=0.011  Score=53.09  Aligned_cols=111  Identities=12%  Similarity=0.078  Sum_probs=71.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE--EEcchHHHHh---c
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE---S  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~--~~~D~~~~l~---~  171 (251)
                      +++..++++|||+|.=.+.|++.    ....+.+.||+|.+.++.+.+.+...    .-|.+++  +++|..+-+.   .
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~  150 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR  150 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence            45568999999999865555442    12357999999999999998887621    2366766  7887765433   2


Q ss_pred             C--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcc-cCCCCcEEEEec
Q 025534          172 R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (251)
Q Consensus       172 ~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~-~L~pgG~l~~~~  219 (251)
                      .  .....+|+.=-..-.+..|   .-...|++. +++ .|+|||.+++-.
T Consensus       151 ~~~~~~~r~~~flGSsiGNf~~---~ea~~fL~~-~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGNFSR---PEAAAFLAG-FLATALSPSDSFLIGL  197 (319)
T ss_pred             ccccCCccEEEEeCccccCCCH---HHHHHHHHH-HHHhhCCCCCEEEEec
Confidence            1  2335565543211110112   223578888 788 999999988754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.00037  Score=64.88  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC---Cce
Q 025534          101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~---~~f  176 (251)
                      .++-+||+.=+++|.-+...++ .+++.+|++-|.|+..++..+++..+|.   ....++..++|+....-...   +.|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence            3467899988888886554444 4778899999999999999999998875   45688999999988765444   889


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|=+|++.    .|      ..|+.. +-+.+++||+|.+-+
T Consensus       185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~  216 (525)
T KOG1253|consen  185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC  216 (525)
T ss_pred             ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence            999999884    22      267787 688999999998754

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.14  E-value=0.0059  Score=45.86  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             EEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcCC-CceeEEEEc
Q 025534          106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD  182 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~~-~~fD~Ii~D  182 (251)
                      ++++|||+|... .+...... ..++++|+++.++..++..... .   ....+.+..+|.... +.... ..||++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence            999999999976 33333221 3788899999999985544321 1   011168888887662 33233 479999333


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ...... .      ....+.. +.+.|+|+|.+++...
T Consensus       127 ~~~~~~-~------~~~~~~~-~~~~l~~~g~~~~~~~  156 (257)
T COG0500         127 LVLHLL-P------PAKALRE-LLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eehhcC-C------HHHHHHH-HHHhcCCCcEEEEEec
Confidence            322110 0      3567777 6899999998887653

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.99  E-value=0.011  Score=54.30  Aligned_cols=136  Identities=14%  Similarity=0.047  Sum_probs=92.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      ++.||||+++..|+=+.+++.. ..-..|.+.|.+..-++..+.++...+    -.+.-+...|+++|-.+ ...+||-|
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fDRV  316 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFDRV  316 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccccee
Confidence            3589999999999866666553 233589999999999999988876543    35678888999887533 23489999


Q ss_pred             EEcCCCCCC---CCcc-------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIE---GGPC-------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~---~~p~-------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|....   ..+.             ..-+.++.+.. .-+.+++||+|+-.+++   .. .+......+.+-..||
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCS---I~-~~ENE~vV~yaL~K~p  391 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCS---IT-VEENEAVVDYALKKRP  391 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeee---cc-hhhhHHHHHHHHHhCC
Confidence            999985321   0010             00012456666 57899999999876544   22 3445566666666676


Q ss_pred             cee
Q 025534          244 CGY  246 (251)
Q Consensus       244 ~v~  246 (251)
                      .+.
T Consensus       392 ~~k  394 (460)
T KOG1122|consen  392 EVK  394 (460)
T ss_pred             ceE
Confidence            653

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.96  E-value=0.0033  Score=55.03  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=66.0

Q ss_pred             CCCeEEEEecCchH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhc-hh-cc-----------------cCC-
Q 025534          102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSY-LV-VN-----------------KEA-  152 (251)
Q Consensus       102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~-~~-~~-----------------~~~-  152 (251)
                      .+-||+-.||++|-    ++..+.+..+     .-+|++.|||..+++.|++- .+ ..                 .+. 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36789999999995    4555555432     35899999999999999862 11 00                 000 


Q ss_pred             C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          153 F-----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       153 ~-----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +     -...|++-..|...--. ..+.||+|+|=----.    ...-...+.+.. .+..|+|||.|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIY----Fd~~~q~~il~~-f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIY----FDEETQERILRR-FADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEe----eCHHHHHHHHHH-HHHHhCCCCEEEEc
Confidence            0     01233444444322110 2357999999521000    001123567777 78999999999874

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.94  E-value=0.0052  Score=51.32  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=82.6

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc----cCCCCCCCeEEEEcchHHHHhcC--CCce
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESY  176 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~----~~~~~~~rv~~~~~D~~~~l~~~--~~~f  176 (251)
                      .-.+.|||||-|++...|+...+...|.+.||--.|.+..++.....    .+. .-+++.+....+..|+.+-  ..+-
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhccc
Confidence            35689999999999999998877789999999999999988875321    111 2578899999999998652  2344


Q ss_pred             eEEEEcCCCCCC--CCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~--~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +-++.-.++|..  ......+.+.....+ +.-+|++||++..-
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~yti  182 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTI  182 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEE
Confidence            444444444431  111245666777777 68899999998764

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.92  E-value=0.0025  Score=59.75  Aligned_cols=116  Identities=21%  Similarity=0.290  Sum_probs=62.2

Q ss_pred             hHHHHHHHh-Hhh-cCCCCCeEEEEecCchHHHHHHHhcCCCcEEE--EEECChHHHHHHHhc-hhcccCCCCCCCeEEE
Q 025534           87 IYHESLVHP-ALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LVVNKEAFSDPRLELV  161 (251)
Q Consensus        87 ~y~e~l~~~-~~~-~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~~  161 (251)
                      .|.+.+..+ +.. ....-+.+||+|||.|+++.+++.+ ++..++  .-|..+..++.|-+. ++.        -+-+ 
T Consensus       100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa--------~~~~-  169 (506)
T PF03141_consen  100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPA--------MIGV-  169 (506)
T ss_pred             HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcch--------hhhh-
Confidence            466655432 321 2223467999999999999999886 332222  123334445554432 111        0000 


Q ss_pred             EcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          162 INDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       162 ~~D~~~~l~~~~~~fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      .+  -.-+.-..+.||+|=+.-. .+|.  +...+    ++-+ +.|+|+|||.++ .+++|
T Consensus       170 ~~--s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv-~S~pp  221 (506)
T PF03141_consen  170 LG--SQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFV-LSGPP  221 (506)
T ss_pred             hc--cccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEE-ecCCc
Confidence            01  1112234678999876543 3442  11111    2334 689999999876 55566

; GO: 0008168 methyltransferase activity

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.89  E-value=0.0009  Score=57.26  Aligned_cols=81  Identities=22%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh---cccCC--CCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEA--FSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~--~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+|||.=+|-|.=+.-++.. + .+|+++|-||.+..+.+.-+.   .....  ..-.|++++++|..+|++...+.||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            48999888888877766654 4 589999999999888775432   11100  00148999999999999865789999


Q ss_pred             EEEcCCCC
Q 025534          179 IIGDLADP  186 (251)
Q Consensus       179 Ii~D~~~~  186 (251)
                      |.+||-.|
T Consensus       155 VY~DPMFp  162 (234)
T PF04445_consen  155 VYFDPMFP  162 (234)
T ss_dssp             EEE--S--
T ss_pred             EEECCCCC
Confidence            99999544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.89  E-value=0.0062  Score=54.25  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CC-Ccee
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~-~~fD  177 (251)
                      ++..++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+...     ..|+++++++..++...   .+ +++|
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD   94 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID   94 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence            446899999999999999988633379999999999999999876422     35899999998876532   12 5799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      .|+.|.-
T Consensus        95 gIl~DLG  101 (305)
T TIGR00006        95 GILVDLG  101 (305)
T ss_pred             EEEEecc
Confidence            9999973

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.85  E-value=0.0039  Score=49.17  Aligned_cols=106  Identities=24%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCC-CCCCC--CcccCCccHHHHHH
Q 025534          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLA-DPIEG--GPCYKLYTKSFYEF  203 (251)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~~fD~Ii~D~~-~~~~~--~p~~~l~~~ef~~~  203 (251)
                      +|.+.||-+++++.+++.+...+   ...|++++++.=.+...-.+ ++.|+++.|.- -|..+  .....-.|...++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            58899999999999999886442   23589999876554333223 48999999973 34311  00111234567777


Q ss_pred             HHcccCCCCcEEEEec--CCCCCCCChHHHHHHHHHHHh
Q 025534          204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       204 ~~~~~L~pgG~l~~~~--~~p~~~~~~~~~~~i~~~l~~  240 (251)
                       +.++|+|||++++-.  |+|.   ..+....+.+.+++
T Consensus        78 -al~lL~~gG~i~iv~Y~GH~g---G~eE~~av~~~~~~  112 (140)
T PF06962_consen   78 -ALELLKPGGIITIVVYPGHPG---GKEESEAVEEFLAS  112 (140)
T ss_dssp             -HHHHEEEEEEEEEEE--STCH---HHHHHHHHHHHHHT
T ss_pred             -HHHhhccCCEEEEEEeCCCCC---CHHHHHHHHHHHHh
Confidence             689999999887655  4441   23444455555543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.81  E-value=0.012  Score=53.37  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--CC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh------
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~------  170 (251)
                      .+..+|||++..-|+=+..++..  ..  ...|.+-|.|+.=+...++-....    ..+++.+...|+-.+-.      
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence            45689999999999977766653  21  238999999998777766544322    23445554444433211      


Q ss_pred             --cCCCceeEEEEcCCCCCC----CCcc-------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHH
Q 025534          171 --SRKESYDVIIGDLADPIE----GGPC-------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF  231 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~~~~~----~~p~-------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~  231 (251)
                        .....||-|++|.+....    ..+.             -+......+.. ..+.||+||.++-.+++-+..-+....
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV  308 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV  308 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence              123589999999983221    0110             01112345555 368999999999776543223344456


Q ss_pred             HHHHHHHHhhCCc
Q 025534          232 SCIYNTLRQVFKC  244 (251)
Q Consensus       232 ~~i~~~l~~~F~~  244 (251)
                      +.+++..+..|+-
T Consensus       309 ~~~L~~~~~~~~l  321 (375)
T KOG2198|consen  309 QEALQKVGGAVEL  321 (375)
T ss_pred             HHHHHHhcCcccc
Confidence            6666666555543

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.81  E-value=0.0066  Score=51.14  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             CCCCeEEEEecCchHHHHH--HHhcCCCcEEEEEECChHHHHHHHhchhccc-C--------------------------
Q 025534          101 PNPKTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E--------------------------  151 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~--------------------------  151 (251)
                      ..|-.+-|-+||+|.++.-  +++......|.+-|+|++++++|++|+.+.. +                          
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4577899999999997643  3444446789999999999999999875321 0                          


Q ss_pred             -----------CCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCC----CCCC-CcccCCccHHHHHHHHcccCCC
Q 025534          152 -----------AFSDPRLELVINDARAELE----SRKESYDVIIGDLAD----PIEG-GPCYKLYTKSFYEFVVKPRLNP  211 (251)
Q Consensus       152 -----------~~~~~rv~~~~~D~~~~l~----~~~~~fD~Ii~D~~~----~~~~-~p~~~l~~~ef~~~~~~~~L~p  211 (251)
                                 .-......+...|.++.-.    .....-|+|+.|.|.    .|.. .+.  --...++.. +...|-+
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~--~p~~~ml~~-l~~vLp~  206 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG--GPVAQMLNS-LAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H--HHHHHHHHH-HHCCS-T
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC--CcHHHHHHH-HHhhCCC
Confidence                       0012346788888877532    123456999999984    3432 111  113578898 8999976


Q ss_pred             CcEEEE
Q 025534          212 EGIFVT  217 (251)
Q Consensus       212 gG~l~~  217 (251)
                      ++++++
T Consensus       207 ~sVV~v  212 (246)
T PF11599_consen  207 RSVVAV  212 (246)
T ss_dssp             T-EEEE
T ss_pred             CcEEEE
Confidence            777777

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.80  E-value=0.003  Score=55.54  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=78.5

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~  183 (251)
                      +|+++.||.|++...+.+. +...+.++|+|+.+++..+++++.          .++.+|..++.... ...+|+|+..+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~----------~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN----------KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC----------CCccCccccCchhhcCCCCCEEEeCC
Confidence            6999999999998887765 456789999999999999988641          15667776654332 45799999999


Q ss_pred             CCCCC--C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534          184 ADPIE--G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV  241 (251)
Q Consensus       184 ~~~~~--~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~  241 (251)
                      |....  .       .+...| -.++++. + +.++|.=+++=|+  +....  ....+..+.+.|.+.
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~  134 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEEL  134 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhC
Confidence            74211  0       111112 2356654 3 4568875544343  32221  245677787877764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.77  E-value=0.012  Score=48.59  Aligned_cols=124  Identities=16%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chH---HHHh----cC
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR---AELE----SR  172 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~---~~l~----~~  172 (251)
                      +..+|||+|+..|+.+.-+.+. .+...|.+||+-         ++.-      .+.+.++.+ |..   .+.+    .+
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p------~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEP------PEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccC------CCCcccccccccCCHHHHHHHHHhCC
Confidence            4578999999999988777665 356789999983         3221      123444444 332   2211    13


Q ss_pred             CCceeEEEEcCCCCCCCCc--ccCCccHHHHHHH---HcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          173 KESYDVIIGDLADPIEGGP--CYKLYTKSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p--~~~l~~~ef~~~~---~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      +.+.|+|++|...... +.  ..+....+....+   .-..++|+|.++...     |... .-..+.+.|.++|..|..
T Consensus       134 ~r~VdvVlSDMapnaT-Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~-----w~g~-e~~~l~r~l~~~f~~Vk~  206 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNAT-GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL-----WDGS-EEALLQRRLQAVFTNVKK  206 (232)
T ss_pred             CCcccEEEeccCCCCc-CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE-----ecCC-chHHHHHHHHHHhhhcEe
Confidence            5789999999763211 21  1122222222110   246788999999865     3222 234555667777776653

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.74  E-value=0.0055  Score=52.82  Aligned_cols=75  Identities=23%  Similarity=0.333  Sum_probs=52.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|+|||||.-=++.-.....+...+.++|||..+++....++...     .++.++...|...-  ...+..|+.+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~DlaL  176 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLAL  176 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchhh
Confidence            5589999999998877765555544569999999999999999998754     36778888885432  2357799888


Q ss_pred             Ec
Q 025534          181 GD  182 (251)
Q Consensus       181 ~D  182 (251)
                      +=
T Consensus       177 ll  178 (251)
T PF07091_consen  177 LL  178 (251)
T ss_dssp             EE
T ss_pred             HH
Confidence            74

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0079  Score=51.39  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      ..+.+.+||||.-||+++-.+++. ++.+|.+||..-..+.+--+         ++||+.++..-=..++..  ..+..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~l~~~~~~~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRYLTPEDFTEKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhhCCHHHcccCCC
Confidence            457799999999999999999996 57899999997655554322         467876655332333322  235789


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|++|...    .+     ....+.. +...|+|++.++.-
T Consensus       147 ~~v~DvSF----IS-----L~~iLp~-l~~l~~~~~~~v~L  177 (245)
T COG1189         147 LIVIDVSF----IS-----LKLILPA-LLLLLKDGGDLVLL  177 (245)
T ss_pred             eEEEEeeh----hh-----HHHHHHH-HHHhcCCCceEEEE
Confidence            99999742    11     1233444 56677777766543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.73  E-value=0.013  Score=55.65  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC----CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh----cCC
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----SRK  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~----~~~  173 (251)
                      ...+|.|.-||+|++.....++-.    ...+.+.|+++....+|+-++-+++...   .+.+.++|-..-..    ...
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~~  262 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDDK  262 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCCc
Confidence            446899999999998776665421    2568999999999999999987665311   45566666433221    123


Q ss_pred             CceeEEEEcCCCC---CCC--------------C-cccCCcc-HHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~---~~~--------------~-p~~~l~~-~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++||.|+.+||..   |..              + +...-.. ..|++. +...|+|+|...+-.
T Consensus       263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaivl  326 (489)
T COG0286         263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIVL  326 (489)
T ss_pred             cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEEe
Confidence            6799999999842   110              0 0001111 568888 689999988555443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.73  E-value=0.0017  Score=53.78  Aligned_cols=97  Identities=22%  Similarity=0.241  Sum_probs=69.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||+|.|+|..+...++. +...|...|++|-.+...+-+...|+     -.+.+...|..-    .+..||+|+.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~g----~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLIG----SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeeccccC----CCcceeEEEe
Confidence            4799999999999999888875 56799999999998888888777653     467888888533    4678999886


Q ss_pred             -cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 -D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                       |.+...    ..   ....+. + +++|+..|..++
T Consensus       149 gDlfy~~----~~---a~~l~~-~-~~~l~~~g~~vl  176 (218)
T COG3897         149 GDLFYNH----TE---ADRLIP-W-KDRLAEAGAAVL  176 (218)
T ss_pred             eceecCc----hH---HHHHHH-H-HHHHHhCCCEEE
Confidence             444211    11   112233 2 566777776665

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.71  E-value=0.0025  Score=53.52  Aligned_cols=89  Identities=22%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++...|-|+|||.+.++..+-.  . -+|...|+-+                 .++  .++..|... +.-.++..|++
T Consensus        70 ~~~~~viaD~GCGdA~la~~~~~--~-~~V~SfDLva-----------------~n~--~Vtacdia~-vPL~~~svDv~  126 (219)
T PF05148_consen   70 RPKSLVIADFGCGDAKLAKAVPN--K-HKVHSFDLVA-----------------PNP--RVTACDIAN-VPLEDESVDVA  126 (219)
T ss_dssp             S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SST--TEEES-TTS--S--TT-EEEE
T ss_pred             cCCCEEEEECCCchHHHHHhccc--C-ceEEEeeccC-----------------CCC--CEEEecCcc-CcCCCCceeEE
Confidence            34456799999999999976532  1 3577777732                 123  355677643 33346899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |..+.--.   .    --.+|+++ +.|+|||||.|.+--
T Consensus       127 VfcLSLMG---T----n~~~fi~E-A~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  127 VFCLSLMG---T----NWPDFIRE-ANRVLKPGGILKIAE  158 (219)
T ss_dssp             EEES---S---S-----HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEhhhhC---C----CcHHHHHH-HHheeccCcEEEEEE
Confidence            99875321   1    12488999 799999999987743

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.68  E-value=0.016  Score=52.38  Aligned_cols=93  Identities=25%  Similarity=0.280  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhcCCCce
Q 025534          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~~~~~f  176 (251)
                      .++++|++.|+| .|.++.++++..+ ++|++++.+++-.+.|++.-.          -.++.   .|..+-+   .+.+
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~---~~~~  230 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAV---KEIA  230 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHh---HhhC
Confidence            457899999987 2346777777555 799999999999999998622          12222   3333333   2459


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |+|+.-.. +.           . +.. ..+.|+++|.+++-..+
T Consensus       231 d~ii~tv~-~~-----------~-~~~-~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         231 DAIIDTVG-PA-----------T-LEP-SLKALRRGGTLVLVGLP  261 (339)
T ss_pred             cEEEECCC-hh-----------h-HHH-HHHHHhcCCEEEEECCC
Confidence            99998754 21           1 233 35789999999976654

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.60  E-value=0.0054  Score=48.28  Aligned_cols=77  Identities=21%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHh-----cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025534          101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~  175 (251)
                      .++.+|+|+|+|-|.++..++.     .+ ..+|++||.++..++.++++....... -..++++..++......  ...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~   99 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCNESLVESAQKRAQKLGSD-LEKRLSFIQGDIADESS--SDP   99 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECCcHHHHHHHHHHHHhcch-hhccchhhccchhhhcc--cCC
Confidence            4568999999999999999888     53 469999999999999998875432211 12456666665444321  234


Q ss_pred             eeEEEE
Q 025534          176 YDVIIG  181 (251)
Q Consensus       176 fD~Ii~  181 (251)
                      .++++-
T Consensus       100 ~~~~vg  105 (141)
T PF13679_consen  100 PDILVG  105 (141)
T ss_pred             CeEEEE
Confidence            454443

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.51  E-value=0.019  Score=49.23  Aligned_cols=121  Identities=19%  Similarity=0.244  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChH----HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~  173 (251)
                      +...+||-||.++|....++... .+..-|.+||.++.    .+.+|++          .+++--++.||+.--+-  .-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV  224 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV  224 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence            45689999999999998888775 33457999999864    4455554          36777788998764321  12


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCC---CCChHHHHHHHHHHHh
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~---~~~~~~~~~i~~~l~~  240 (251)
                      ...|+|+.|.+.|..        ++-.... .+.-||+||-+++..-.+|.   ......|+.-.+.|++
T Consensus       225 gmVDvIFaDvaqpdq--------~RivaLN-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqe  285 (317)
T KOG1596|consen  225 GMVDVIFADVAQPDQ--------ARIVALN-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQE  285 (317)
T ss_pred             eeEEEEeccCCCchh--------hhhhhhh-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHH
Confidence            478999999875542        1112223 46789999988876543332   1234567777777764

>PRK11524 putative methyltransferase; Provisional

Probab=96.47  E-value=0.0094  Score=52.58  Aligned_cols=65  Identities=20%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCC---CcccC-------CccHHHHHHHHcccCCCCcEEEEecC
Q 025534          155 DPRLELVINDARAELESR-KESYDVIIGDLADPIEG---GPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       155 ~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~---~p~~~-------l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ....+++++|+.++++.. +++||+|++|||.....   .....       -+..+++.+ +.++|||||.+++...
T Consensus         6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence            345689999999988653 57899999999743200   11000       012467888 6999999999998653

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.45  E-value=0.0069  Score=50.86  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHh---c-CCCcEEEEEECChHHHH-HHHhchhcccCCCCCCCeEEEEcchHHH--Hhc--
Q 025534          101 PNPKTIFIMGGGEGSTAREILR---H-KTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAE--LES--  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~---~-~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~--  171 (251)
                      .+|..|+++|.-.|+.+...+.   . .+.++|.+||||..-.. .+.+.-+      ..+|++++.||..+-  +.+  
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp------~~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP------MSPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc------ccCceEEEECCCCCHHHHHHHH
Confidence            3788999999999887765543   2 24579999999754432 2222212      237999999997532  221  


Q ss_pred             -C--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       172 -~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                       .  .....+|+.|+.+...     +  ...-++. +...+++|+.+++.
T Consensus       105 ~~~~~~~~vlVilDs~H~~~-----h--vl~eL~~-y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  105 ELASPPHPVLVILDSSHTHE-----H--VLAELEA-YAPLVSPGSYLIVE  146 (206)
T ss_dssp             SS----SSEEEEESS----S-----S--HHHHHHH-HHHT--TT-EEEET
T ss_pred             HhhccCCceEEEECCCccHH-----H--HHHHHHH-hCccCCCCCEEEEE
Confidence             1  2356699999764321     1  1234455 57899999999874

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PTZ00357 methyltransferase; Provisional

Probab=96.44  E-value=0.011  Score=57.61  Aligned_cols=105  Identities=17%  Similarity=0.264  Sum_probs=66.1

Q ss_pred             eEEEEecCchHHHHHHHhc---CC-CcEEEEEECChHHHHHHHhch---h-ccc-CCCCCCCeEEEEcchHHHHhcC---
Q 025534          105 TIFIMGGGEGSTAREILRH---KT-VEKVVMCDIDEEVVEFCKSYL---V-VNK-EAFSDPRLELVINDARAELESR---  172 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~---~~-~~~v~~VEid~~vi~~a~~~~---~-~~~-~~~~~~rv~~~~~D~~~~l~~~---  172 (251)
                      .|+++|+|-|-+....++.   .+ ..+|.+||.||..+...+...   . +.. ......+|+++..|.|.|-...   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            4899999999887665552   11 247999999966443333221   1 211 0011468999999999984211   


Q ss_pred             -------CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCC----CcE
Q 025534          173 -------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI  214 (251)
Q Consensus       173 -------~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p----gG~  214 (251)
                             -+++|+||+.+...+  +-  .-+++|.+.. +.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSF--GD--NELSPECLDG-aQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSL--GD--NELSPECLEA-FHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhccc--cc--ccCCHHHHHH-HHHhhhhhcccccc
Confidence                   137999999876444  21  2235677777 5777776    676

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.33  E-value=0.055  Score=47.23  Aligned_cols=128  Identities=16%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             CCeEEEEecCchH--HHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---Hhc-----
Q 025534          103 PKTIFIMGGGEGS--TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-----  171 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l~~-----  171 (251)
                      -+..||||||-=.  ..+++++. .+.++|..||.||.++.-+|.-+.-+.    ..+..++.+|.++-   +..     
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~----~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP----RGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence            4789999998543  56777663 345799999999999998888765331    12489999998863   221     


Q ss_pred             ---CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                         .+++.=++++...+....    .-.-.+.++. +++.|.||..|++......  ..+...+.+...+++.
T Consensus       145 ~lD~~rPVavll~~vLh~v~D----~~dp~~iv~~-l~d~lapGS~L~ish~t~d--~~p~~~~~~~~~~~~~  210 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPD----DDDPAGIVAR-LRDALAPGSYLAISHATDD--GAPERAEALEAVYAQA  210 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-C----GCTHHHHHHH-HHCCS-TT-EEEEEEEB-T--TSHHHHHHHHHHHHHC
T ss_pred             cCCCCCCeeeeeeeeeccCCC----ccCHHHHHHH-HHHhCCCCceEEEEecCCC--CCHHHHHHHHHHHHcC
Confidence               123333555544322110    0112478888 7999999999988654331  2333444555555544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.30  E-value=0.031  Score=49.45  Aligned_cols=77  Identities=23%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---C-CCcee
Q 025534          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~-~~~fD  177 (251)
                      ..-.+|.=.|.|+-+..+++. ++..+++++|.||.+++.|++.+...     ++|++++++...++...   . ..++|
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~vD   98 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKVD   98 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence            467888888999999999886 44567999999999999999987533     37999999987665432   2 36899


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      -|+.|.-
T Consensus        99 GiL~DLG  105 (314)
T COG0275          99 GILLDLG  105 (314)
T ss_pred             EEEEecc
Confidence            9999973

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.25  E-value=0.015  Score=50.47  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...-|-|+|||.+-++.   ..+  ..|...|+-+                   .+-+++..|.++ +.-.+++.|+++.
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV~  234 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SER--HKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAVF  234 (325)
T ss_pred             CceEEEecccchhhhhh---ccc--cceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEEe
Confidence            34568889999998876   222  3566666521                   234566777777 4455789999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHH
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT  237 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~  237 (251)
                      .+.--.     ..+  .+|+.+ +.|+|++||.+.+--.... +.+...+.+.+..
T Consensus       235 CLSLMg-----tn~--~df~kE-a~RiLk~gG~l~IAEv~SR-f~dv~~f~r~l~~  281 (325)
T KOG3045|consen  235 CLSLMG-----TNL--ADFIKE-ANRILKPGGLLYIAEVKSR-FSDVKGFVRALTK  281 (325)
T ss_pred             eHhhhc-----ccH--HHHHHH-HHHHhccCceEEEEehhhh-cccHHHHHHHHHH
Confidence            865211     112  489999 7999999999876542221 3344444444433

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.14  E-value=0.019  Score=51.28  Aligned_cols=78  Identities=21%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hcC--CCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESR--KESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~--~~~f  176 (251)
                      +...++|.=.|.|+-+..+++..+..++.++|.||++++.+++.+...     .+|+.+++++..++-   ...  ..++
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINKV   94 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCcc
Confidence            456789988899999999987644489999999999999999886532     479999998876543   323  2589


Q ss_pred             eEEEEcCC
Q 025534          177 DVIIGDLA  184 (251)
Q Consensus       177 D~Ii~D~~  184 (251)
                      |.|+.|.-
T Consensus        95 dgiL~DLG  102 (310)
T PF01795_consen   95 DGILFDLG  102 (310)
T ss_dssp             EEEEEE-S
T ss_pred             CEEEEccc
Confidence            99999973

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.85  E-value=0.059  Score=50.51  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      ++|.+|||.--+...+.+- +...|+.+|+|+.+++.....-..     ..+-.++...|..... -.++.||+|+.-.+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~-fedESFdiVIdkGt  123 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV-FEDESFDIVIDKGT  123 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc-CCCcceeEEEecCc
Confidence            7999999998888877764 457899999999999987654321     3567888888876643 35689999997554


Q ss_pred             CCCCCCcccCC----ccHHHHHHHHcccCCCCcEEEEec
Q 025534          185 DPIEGGPCYKL----YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       185 ~~~~~~p~~~l----~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ......+...+    .....+.. +.+.|+++|+++.-+
T Consensus       124 lDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  124 LDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYISVT  161 (482)
T ss_pred             cccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEEEE
Confidence            21111111112    22345666 689999999976544

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.012  Score=47.58  Aligned_cols=127  Identities=16%  Similarity=0.121  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCchHHHHHH-HhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREI-LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  179 (251)
                      .+++||++|+|--+++-.+ +...+...|..-|-|++.++-.++-...|.. ..-.+..+..-+-..-.. ....+||+|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiI  107 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDII  107 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEE
Confidence            3588999999976665444 4445567899999999999988875433310 011223222222111111 124589999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++.-.-..      .-+-....+. ++..|+|.|.-++.  +|   .+.+.++.+.+-..++
T Consensus       108 laADClFf------dE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~  157 (201)
T KOG3201|consen  108 LAADCLFF------DEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTV  157 (201)
T ss_pred             EeccchhH------HHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhc
Confidence            98532100      0112345555 79999999985554  34   3455666666665555

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.72  E-value=0.017  Score=50.45  Aligned_cols=79  Identities=24%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      .+++|+++|=-+ ..+..++-..-..+|.+||||+..++...+.....    .-.+++.+.-|.++-+.+ ...+||+++
T Consensus       152 ~gK~I~vvGDDD-Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVGDDD-LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEcCch-hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence            468899999433 33332222222379999999999999988876533    235688888898887654 347999999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      .||+.
T Consensus       227 TDPpe  231 (354)
T COG1568         227 TDPPE  231 (354)
T ss_pred             cCchh
Confidence            99875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.59  E-value=0.13  Score=46.71  Aligned_cols=99  Identities=22%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             CCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcC-CCceeEE
Q 025534          103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESR-KESYDVI  179 (251)
Q Consensus       103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~-~~~fD~I  179 (251)
                      +.+|+++|+|.=++ +..+++..+..+|+++|.+++=+++|++++....  ..++.-+    |...-+ ..+ +..+|++
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--~~~~~~~----~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--VVNPSED----DAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--eecCccc----cHHHHHHHHhCCCCCCEE
Confidence            34899999998554 4667777777899999999999999999654211  0111111    333333 223 3479999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +--.-            +...+.. +.+.++++|.+++...
T Consensus       243 ie~~G------------~~~~~~~-ai~~~r~gG~v~~vGv  270 (350)
T COG1063         243 IEAVG------------SPPALDQ-ALEALRPGGTVVVVGV  270 (350)
T ss_pred             EECCC------------CHHHHHH-HHHHhcCCCEEEEEec
Confidence            96542            1245666 5789999999987653

>PRK13699 putative methylase; Provisional

Probab=95.55  E-value=0.036  Score=47.32  Aligned_cols=61  Identities=10%  Similarity=0.133  Sum_probs=42.4

Q ss_pred             eEEEEcchHHHHhc-CCCceeEEEEcCCCCCC----CC-cc-cC---CccHHHHHHHHcccCCCCcEEEEec
Q 025534          158 LELVINDARAELES-RKESYDVIIGDLADPIE----GG-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       158 v~~~~~D~~~~l~~-~~~~fD~Ii~D~~~~~~----~~-p~-~~---l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+++++|+.+.++. .+++.|+|+.|||....    .+ .. ..   -+..+++.+ +.++|||||.+++..
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~   72 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY   72 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence            37899999999876 46899999999985310    01 00 00   122466777 689999999988754

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.54  E-value=0.0025  Score=53.39  Aligned_cols=92  Identities=20%  Similarity=0.261  Sum_probs=63.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.++||||.|+|-++..++.+.  .+|.+-|++..|....++.           +.+++-  ..+|+. ++-+||+|.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~c  175 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLILC  175 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHHH
Confidence            46899999999999999887654  6899999999999877653           122221  234553 4568999986


Q ss_pred             c-CCCCCCCCcccCCccHHHHHHHHcccCCC-CcEEEE
Q 025534          182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT  217 (251)
Q Consensus       182 D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~p-gG~l~~  217 (251)
                      - ..|.. ..|      -..++. ++.+|+| +|.+++
T Consensus       176 lNlLDRc-~~p------~kLL~D-i~~vl~psngrviv  205 (288)
T KOG3987|consen  176 LNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIV  205 (288)
T ss_pred             HHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEE
Confidence            3 23322 133      245677 6888999 887664

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.51  E-value=0.11  Score=47.41  Aligned_cols=111  Identities=19%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc-hHHHHhc--CCCce
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES--RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~l~~--~~~~f  176 (251)
                      .+..+||++|+|+ |..+..+++..+..+|++++.+++..+.++++...       ..+.....| ..+.+..  .++.+
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~  255 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP  255 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence            3467899999887 77778888876655799999999999999986421       111222221 3333322  22469


Q ss_pred             eEEEEcCCCCCCCCcccC---------CccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYK---------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~---------l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-.........+..+         -.+...+.. +.+.|+++|.++...
T Consensus       256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g  306 (386)
T cd08283         256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG  306 (386)
T ss_pred             CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence            988864321100000000         012345666 578899999988653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.49  E-value=0.098  Score=46.93  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +...      -+..-..|..+.... .+.+|+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~~~~-~g~~D~vi  240 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK------LVNPQNDDLDHYKAE-KGYFDVSF  240 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE------EecCCcccHHHHhcc-CCCCCEEE
Confidence            467899998742 22445666665655799999999999999874 2110      000011223333332 24599887


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -..-     .       ...++. ..+.|+++|+++.-.
T Consensus       241 d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EVSG-----H-------PSSINT-CLEVTRAKGVMVQVG  266 (343)
T ss_pred             ECCC-----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence            4421     1       134455 467899999988654

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.30  E-value=0.19  Score=45.24  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=81.7

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~-~fD~Ii  180 (251)
                      ..+++++-+|.|++..-+... +..-+.++|+||..++.-+.+++.         ..++..|..++....- . .+|+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence            357999999999998877765 456788999999999999988753         4566778776654322 2 789999


Q ss_pred             EcCCCCCC--C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCC-hHHHHHHHHHHHhh
Q 025534          181 GDLADPIE--G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~--~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~-~~~~~~i~~~l~~~  241 (251)
                      --+|.+..  .       ++-..| ..++++.  -..++| - +++.-+.|+.... ...+..+.+.|.+.
T Consensus        73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P-~-~fv~ENV~gl~~~~~~~~~~i~~~L~~~  138 (328)
T COG0270          73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRP-K-FFVLENVKGLLSSKGQTFDEIKKELEEL  138 (328)
T ss_pred             eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCC-C-EEEEecCchHHhcCchHHHHHHHHHHHc
Confidence            98874311  1       221222 3577775  367888 3 3333334433322 34677777777765

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.27  E-value=0.049  Score=43.92  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe-EEEEcchHHHHhcCCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .++++++|...=-+=..++++ ++.+|..||-++--++  .+ |        ..|+ .+...|...-...-.++||.+.+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~--------~dr~ssi~p~df~~~~~~y~~~fD~~as   69 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F--------RDRLSSILPVDFAKNWQKYAGSFDFAAS   69 (177)
T ss_pred             CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c--------ccccccccHHHHHHHHHHhhccchhhhe
Confidence            578999999866666666666 5678999998862211  11 1        1233 23334433322334578998876


Q ss_pred             cCC-CCCC----CCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~-~~~~----~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -.. ++..    ..|....-...-+.. +++.||+||.+.+-.
T Consensus        70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV  111 (177)
T ss_pred             echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence            543 2221    234334445567777 799999999887643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.26  E-value=0.22  Score=47.65  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhc-cc-CCCCCC-----CeEEEEcchH----HHH
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NK-EAFSDP-----RLELVINDAR----AEL  169 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~-~~~~~~-----rv~~~~~D~~----~~l  169 (251)
                      .+.+|+++|+|.=++ +...++..+. +|+++|.+++..+.+++.=.. .. +..+..     .++-...|..    +.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            579999999997664 4556666564 899999999999999984111 00 000000     0111111211    111


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+..+.+|+||.-...|.  .+...+.+    ++ .-+.+||||+++.-.
T Consensus       243 ~~~~~gaDVVIetag~pg--~~aP~lit----~~-~v~~mkpGgvIVdvg  285 (509)
T PRK09424        243 AEQAKEVDIIITTALIPG--KPAPKLIT----AE-MVASMKPGSVIVDLA  285 (509)
T ss_pred             HhccCCCCEEEECCCCCc--ccCcchHH----HH-HHHhcCCCCEEEEEc
Confidence            111246999998775443  11112322    44 456788999887543

>PHA01634 hypothetical protein

Probab=95.06  E-value=0.078  Score=41.17  Aligned_cols=75  Identities=20%  Similarity=0.138  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      -..++|+|||.+-|..+.+.+-. ++..|.++|.+|...+..++....+..  -+. .....    +| ...-+.||+.+
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK-~v~~~----eW-~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDK-AVMKG----EW-NGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eec-eeecc----cc-cccCCCcceEE
Confidence            46799999999999999988875 678999999999999999987664421  011 11110    12 12336899888


Q ss_pred             EcCC
Q 025534          181 GDLA  184 (251)
Q Consensus       181 ~D~~  184 (251)
                      +|--
T Consensus        98 iDCe  101 (156)
T PHA01634         98 MDCE  101 (156)
T ss_pred             EEcc
Confidence            8853

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.04  E-value=0.076  Score=49.05  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=57.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCC-eEEEEcchHHHHhcCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELESRK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~~~~~D~~~~l~~~~  173 (251)
                      ..+.-|.|+.||.|-++.-+++..  ++|++-|++|+++++.+.+.+++.   -+|. ++++..||..|+++.+
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Flr~e~  316 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFLRQEP  316 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHhhcCC
Confidence            456778899999999998888753  799999999999999999998875   3454 9999999999997433

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.94  E-value=0.17  Score=45.33  Aligned_cols=101  Identities=13%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD  177 (251)
                      ..+.+||++|+|.=++ +...++..++.+|.++|+++.-+++|++ |+...- ....+-. ...+.++-+.+.  ...+|
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d  244 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD  244 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence            4578999999997554 4555666678899999999999999999 542210 0011111 334445554432  25688


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +.|--.-.    .        ..++. .-..++.+|++++
T Consensus       245 ~~~dCsG~----~--------~~~~a-ai~a~r~gGt~vl  271 (354)
T KOG0024|consen  245 VTFDCSGA----E--------VTIRA-AIKATRSGGTVVL  271 (354)
T ss_pred             eEEEccCc----h--------HHHHH-HHHHhccCCEEEE
Confidence            88855311    1        22444 4568999998654

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.93  E-value=0.061  Score=47.47  Aligned_cols=184  Identities=17%  Similarity=0.150  Sum_probs=109.2

Q ss_pred             CCccccceEEeeeccccc---eeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcC
Q 025534           24 TGYRKSCWYEEEIEENLR---WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH  100 (251)
Q Consensus        24 ~~~~~~~w~~~~~~~~~~---~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~  100 (251)
                      |+..... +.|.+.+..-   -++....+|....++++++.|.. +..+.++.++.+.+..+.+ ..|...|+.     .
T Consensus       100 te~de~~-Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----g  171 (337)
T KOG1562|consen  100 TERDEFA-YQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-----G  171 (337)
T ss_pred             Ccccccc-ceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-----c
Confidence            4444444 4455553222   22344568999999999998888 5578888888776554433 245544431     1


Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc----hhcccCCCCCCCeEEEEcchHHHHhc---CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~~~~~D~~~~l~~---~~  173 (251)
                      -..++|..+|+ +|....+.++..+ ..|+.+|+|..+...+..+    |....+.+....+.+.++|..-...+   ..
T Consensus       172 y~~~~v~l~iG-DG~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~  249 (337)
T KOG1562|consen  172 YEGKKVKLLIG-DGFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG  249 (337)
T ss_pred             cCCCceEEEec-cHHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH
Confidence            35678998888 8888888776544 6899999999888877654    34333445667888888886543221   12


Q ss_pred             CceeEEEEcCCC-CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          174 ESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       174 ~~fD~Ii~D~~~-~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+||-++.+... ++...|....- +-.|..| .. |+|+|-+.....
T Consensus       250 r~~~~~~f~~t~ya~ttvPTypsg-~igf~l~-s~-~~~~~~~~~p~n  294 (337)
T KOG1562|consen  250 RSFCYVIFDLTAYAITTVPTYPSG-RIGFMLC-SK-LKPDGKYKTPGN  294 (337)
T ss_pred             HHhHHHhcCccceeeecCCCCccc-eEEEEEe-cc-cCCCCCccCCCC
Confidence            455555554431 22212211000 0111222 33 899998876543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.73  E-value=0.031  Score=49.70  Aligned_cols=108  Identities=16%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc-----------------------CC-------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----------------------EA-------  152 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----------------------~~-------  152 (251)
                      +-+||+-|||.|.++..++....  .+-+-|.+--|+=..  +|-+|.                       +.       
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P  226 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP  226 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence            56899999999999999998643  455557766554321  111110                       00       


Q ss_pred             ----C----CCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          153 ----F----SDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       153 ----~----~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                          .    ......+..||..+.....  .+.||+|+...|-...    ...  .|+++. +.+.|+|||+.+ |.||.
T Consensus       227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa----~Ni--leYi~t-I~~iLk~GGvWi-NlGPL  298 (369)
T KOG2798|consen  227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA----HNI--LEYIDT-IYKILKPGGVWI-NLGPL  298 (369)
T ss_pred             cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech----HHH--HHHHHH-HHHhccCCcEEE-eccce
Confidence                0    0112334557766655432  2579999988652221    112  388898 799999999775 77653

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=94.73  E-value=0.045  Score=50.02  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+++++|||-|...+++.... .+.+++++.++.-+..+........   .+.+-.++..|..+-. .++..||.+-.
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~~  184 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVRF  184 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEEE
Confidence            34589999999999999998864 4689999999988877766532111   2234444767754432 34678998875


Q ss_pred             c-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      - ...+   .|    .....|++ +.+.++|||.+++.
T Consensus       185 ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  185 LEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK  214 (364)
T ss_pred             Eeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence            3 3322   12    13578898 79999999999863

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.72  E-value=0.093  Score=44.79  Aligned_cols=124  Identities=22%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-----C-CCc---EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH------
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-----K-TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------  166 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~------  166 (251)
                      .-+||.||+...|+.+..|.+.     + ..+   .|++||+-+.+        +       -+.|.-+++|.-      
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE  105 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence            3578999999999876655542     1 111   39999997643        2       245666666642      


Q ss_pred             HHHhc-CCCceeEEEEcCCCCCCCCcc--cCCccHH----HHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          167 AELES-RKESYDVIIGDLADPIEGGPC--YKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       167 ~~l~~-~~~~fD~Ii~D~~~~~~~~p~--~~l~~~e----f~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      ..++- .+++-|+|++|-.... .+..  ......+    .+.- ...+|+|||.|+...      .+.+...-++..|+
T Consensus       106 ~Ii~hfggekAdlVvcDGAPDv-TGlHd~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql~  177 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGAPDV-TGLHDLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQLR  177 (294)
T ss_pred             HHHHHhCCCCccEEEeCCCCCc-cccccHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHHH
Confidence            22222 2479999999965211 1211  0011111    2222 258999999999753      23333456677888


Q ss_pred             hhCCceeee
Q 025534          240 QVFKCGYNL  248 (251)
Q Consensus       240 ~~F~~v~~~  248 (251)
                      ..|..|.-+
T Consensus       178 ~ff~kv~~~  186 (294)
T KOG1099|consen  178 KFFKKVTCA  186 (294)
T ss_pred             HHhhceeee
Confidence            888877654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.68  E-value=0.17  Score=44.69  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=75.8

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~  183 (251)
                      +|+++-||.|++..-+.+. +...+.++|+|+..++.-+.+++           .+..+|..+.-... ++..|+++.-+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence            6899999999999888775 45678999999999999988763           67778877654221 11599999988


Q ss_pred             CCCC-C-C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534          184 ADPI-E-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV  241 (251)
Q Consensus       184 ~~~~-~-~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~  241 (251)
                      |... + .       .+...|+ .++++. + +.++|.-+++=|+  ++...  ....+..+++.|.+.
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV--~~l~~~~~~~~~~~i~~~l~~l  133 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENV--PGLLSSKNGEVFKEILEELEEL  133 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEE--GGGGTGGGHHHHHHHHHHHHHT
T ss_pred             CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEeccc--ceeecccccccccccccccccc
Confidence            7422 1 1       1112222 456664 3 5688987766555  22122  225678888888764

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=94.66  E-value=0.27  Score=42.47  Aligned_cols=118  Identities=15%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL  183 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~D~  183 (251)
                      |..=.|+=.++..+++.  ..+.+.+|+-|+-.+..+++|.      .+++++++..|+++-+..   +.++==+|++|+
T Consensus        62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence            56667777888888874  3699999999999999998876      357999999999998764   345677999998


Q ss_pred             CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +.-.   +.+.-.-.+.+.. +.++- +.|+++++.  |  ..+....+.+.+.|++.
T Consensus       134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~  182 (245)
T PF04378_consen  134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKAL  182 (245)
T ss_dssp             ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH
T ss_pred             CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhc
Confidence            6321   1111111233333 23333 478888876  3  34566677788888765

; PDB: 2OO3_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.067  Score=42.64  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=53.6

Q ss_pred             HHHHHHhHhhcCCC-CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH
Q 025534           89 HESLVHPALLHHPN-PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (251)
Q Consensus        89 ~e~l~~~~~~~~~~-~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~  167 (251)
                      .|.+.+.--+...+ ..+.+|||.|+|-+....+++. ...-++||+||-.+..+|-+.--.+   -..+.++...|..+
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK  133 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence            45555442222333 3789999999999999888864 5678999999999999887643222   23567777777665


Q ss_pred             H
Q 025534          168 E  168 (251)
Q Consensus       168 ~  168 (251)
                      +
T Consensus       134 ~  134 (199)
T KOG4058|consen  134 V  134 (199)
T ss_pred             c
Confidence            4

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.50  E-value=0.49  Score=43.41  Aligned_cols=98  Identities=23%  Similarity=0.374  Sum_probs=54.0

Q ss_pred             CCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+.+|+++|+|.= ..+...++..+ .+|+++|.+++-.+.+.+.+..        .+.....+.. .+.+.-..+|+||
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~-~l~~~l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAY-EIEDAVKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHH-HHHHHHccCCEEE
Confidence            4678999999733 33444444445 4799999998877665543321        1111112211 2222124689999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ....-+....|  .+.+.+.++     .++|+++++
T Consensus       236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv  264 (370)
T TIGR00518       236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV  264 (370)
T ss_pred             EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence            86543221123  355665544     357777665

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.40  E-value=0.12  Score=43.00  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (251)
                      ...++.-|||.-+|+|+++..+.+..  .+..++|++++.+++|++
T Consensus       188 ~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  188 STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            34567889999999999999988863  689999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.38  E-value=0.15  Score=44.83  Aligned_cols=102  Identities=17%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-c-----CCCC-------CCCeEEEEcchHHH
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-----EAFS-------DPRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~-----~~~~-------~~rv~~~~~D~~~~  168 (251)
                      ++|.+||+|.  +.++..+++. + .+|+++|.|++.++.++++.... .     ....       ..+++. ..|..+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS-G-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA   78 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence            5799999984  3455555554 3 47999999999999877643210 0     0000       012232 2333333


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +    +..|+|+...++..       -...+++++ +.+.++|+.++++++.
T Consensus        79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS  118 (288)
T PRK09260         79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS  118 (288)
T ss_pred             h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence            2    45799998876421       113467777 6788899888877764

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.26  E-value=0.083  Score=49.07  Aligned_cols=55  Identities=15%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI  162 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~  162 (251)
                      .-||+||+|+|.++..+.+. ++..||++|.-..|.++||+-...++  + ..+++++.
T Consensus        68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng--~-SdkI~vIn  122 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNG--M-SDKINVIN  122 (636)
T ss_pred             EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCC--C-ccceeeec
Confidence            35899999999999988886 46789999999999999998765443  2 34666654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.12  E-value=0.56  Score=44.85  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC--------CCCeEEEEcchHH----H
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--------~~rv~~~~~D~~~----~  168 (251)
                      ++.+||++|+|.=++ +..+++..+ ..|+++|.+++..+.+++. +...-..+        ..-.+..-.|..+    .
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            468999999987654 444555445 4799999999999988873 21100000        0001111112111    1


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      +.+.-+.+|+||.-..-|.  .+...|.+.+..     +.+|||++++
T Consensus       241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv-----~~MKpGsvIV  281 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMV-----DSMKAGSVIV  281 (511)
T ss_pred             HHHHhCCCCEEEECcccCC--CCCCeeehHHHH-----hhCCCCCEEE
Confidence            1222357999988765443  232356666643     4577887765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.06  E-value=0.046  Score=46.40  Aligned_cols=60  Identities=17%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      ..-|.+||-|.|++++.++.. +.++...||+|+..+.-.+-..+.     .+.+..++++|+..|
T Consensus        51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF  110 (326)
T ss_pred             cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence            456999999999999999985 578999999999998866543332     245889999998765

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.062  Score=46.54  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             CeEEEEecCchHHHHHHHhcC------------CCcEEEEEECChHHHHHHHhc--hhcc----------------c---
Q 025534          104 KTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKSY--LVVN----------------K---  150 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~a~~~--~~~~----------------~---  150 (251)
                      -.|+++|.|+|.....+.+..            ..-+++.+|.+|.....++.+  ++..                +   
T Consensus        60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r  139 (252)
T COG4121          60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA  139 (252)
T ss_pred             eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence            468889999998766555421            123578899887655443321  1100                0   


Q ss_pred             CCC-CCCCeEEEEcchHHHHhcCCC---ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          151 EAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       151 ~~~-~~~rv~~~~~D~~~~l~~~~~---~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..+ ..-.+.++++|+.+.+...+.   ++|+.+.|.|.|.. +|  .+++.+++.. ++++.+|||.++..+
T Consensus       140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s  208 (252)
T COG4121         140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA  208 (252)
T ss_pred             hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence            011 134678899999999876555   79999999998763 55  6899999999 899999999998743

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.03  E-value=0.077  Score=44.83  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-Hh-cCCCceeEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~-~~~~~fD~Ii  180 (251)
                      +-++||||+=+......  . .+.-.|+.||+++.-                 |  .+...|..+. +. ...++||+|.
T Consensus        52 ~lrlLEVGals~~N~~s--~-~~~fdvt~IDLns~~-----------------~--~I~qqDFm~rplp~~~~e~FdvIs  109 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS--T-SGWFDVTRIDLNSQH-----------------P--GILQQDFMERPLPKNESEKFDVIS  109 (219)
T ss_pred             cceEEeecccCCCCccc--c-cCceeeEEeecCCCC-----------------C--CceeeccccCCCCCCcccceeEEE
Confidence            36899999975543332  2 233469999998722                 2  3445565443 21 2357999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE-----EEEecCCCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQAGPAG  223 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~-----l~~~~~~p~  223 (251)
                      +..--..  -| .....-+..+. +.+.|+|+|.     +++-...||
T Consensus       110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen  110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEeCchH
Confidence            8764211  12 11234578888 6999999999     777665555

>PRK11524 putative methyltransferase; Provisional

Probab=94.02  E-value=0.16  Score=44.71  Aligned_cols=47  Identities=13%  Similarity=0.029  Sum_probs=40.7

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      ...++.-|||.-+|+|+++..+.+..  .+..++|++++-++.|++.+.
T Consensus       205 ~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        205 SSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             hCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence            34567889999999999999888863  689999999999999999864

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.99  E-value=0.45  Score=42.80  Aligned_cols=94  Identities=17%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEEC---ChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      .+.+||++|+|+ |.++..+++..+. +|++++.   +++-.+.+++. ...       .+.....|..+ .. ....+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~-------~v~~~~~~~~~-~~-~~~~~d  240 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GAT-------YVNSSKTPVAE-VK-LVGEFD  240 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCE-------EecCCccchhh-hh-hcCCCC
Confidence            568999998754 3355667776654 7999986   67788888764 211       01000112111 11 235699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+--..     .       ...+.. ..+.|+++|.+++..
T Consensus       241 ~vid~~g-----~-------~~~~~~-~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATG-----V-------PPLAFE-ALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcC-----C-------HHHHHH-HHHHccCCcEEEEEe
Confidence            8885432     1       134555 568899999887643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.96  E-value=0.67  Score=40.06  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL  183 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~D~  183 (251)
                      |..=+|+=-+++.+++.  ..++...|+-|.=....+++|.      .+.++++..+|++.-+..   ++++=-+|++|+
T Consensus        93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence            77788888899999884  3689999999999999999887      357999999999988765   246788999998


Q ss_pred             CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      |.... +  +.-...+.+++ ..++. ++|+++++.  |  ....+..+++++.|++.
T Consensus       165 PfE~~-~--eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~  213 (279)
T COG2961         165 PFELK-D--EYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEAL  213 (279)
T ss_pred             Ccccc-c--HHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhc
Confidence            74221 0  11111233343 23333 478888875  3  34567788888888865

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.87  E-value=0.19  Score=42.84  Aligned_cols=84  Identities=20%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             hhHHHHHHHhHhhcCCCCCeEEEEecCchHHHH--HHHhcCCCcEEEEE--ECChHHHHHHHhchhcccCCCCCCCeEEE
Q 025534           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELV  161 (251)
Q Consensus        86 ~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~~~  161 (251)
                      ..|.+..-.+|.....+.++||++|+|.=+.-+  .|++. + ++||+|  |+++++.++++.           ++++++
T Consensus         8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~-g-A~VtVVap~i~~el~~l~~~-----------~~i~~~   74 (223)
T PRK05562          8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK-G-CYVYILSKKFSKEFLDLKKY-----------GNLKLI   74 (223)
T ss_pred             HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence            355555555676666778999999999777643  34443 3 577777  888888776542           356666


Q ss_pred             EcchHHHHhcCCCceeEEEEcCCC
Q 025534          162 INDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       162 ~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      ..+...--   -+.+++|+....+
T Consensus        75 ~r~~~~~d---l~g~~LViaATdD   95 (223)
T PRK05562         75 KGNYDKEF---IKDKHLIVIATDD   95 (223)
T ss_pred             eCCCChHH---hCCCcEEEECCCC
Confidence            65432211   1457777776443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.85  E-value=0.19  Score=45.08  Aligned_cols=120  Identities=14%  Similarity=0.204  Sum_probs=74.1

Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |+++.||.|++..-+.+. +..-+.++|+|+..++..+.+++         . .++.+|..+.-...-...|+++..+|.
T Consensus         1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG---------N-KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            689999999998887664 45567789999999999988764         1 445678777543222468999998873


Q ss_pred             CC-C-CC-------cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--CChHHHHHHHHHHHhh
Q 025534          186 PI-E-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV  241 (251)
Q Consensus       186 ~~-~-~~-------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~~~~~~~~i~~~l~~~  241 (251)
                      .. . .+       +...| -.++++. + +.++|.=+++=|+  |...  .....+..+++.|+..
T Consensus        70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~  131 (315)
T TIGR00675        70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL  131 (315)
T ss_pred             cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence            21 1 11       11112 2355554 3 5678874444333  2211  1234567777777653

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.78  E-value=0.43  Score=43.29  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      ...+||+.|+|. |.++..+++..+..+|++++.+++-.+.+++. ...      .-+.....|..+.+.. .++.+|+|
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~v  263 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDYA  263 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCEE
Confidence            457899998643 23455666766655799999999999998764 211      0011111233333332 23469988


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-...     .+       +.++. ..+.|+++|.++...
T Consensus       264 id~~G-----~~-------~~~~~-~~~~l~~~G~iv~~G  290 (371)
T cd08281         264 FEMAG-----SV-------PALET-AYEITRRGGTTVTAG  290 (371)
T ss_pred             EECCC-----Ch-------HHHHH-HHHHHhcCCEEEEEc
Confidence            85431     11       33455 467899999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.62  E-value=0.045  Score=49.29  Aligned_cols=82  Identities=17%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHH-------hchhcccCCCCCCCeEEEEcchHHHHhcC
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK-------SYLVVNKEAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-------~~~~~~~~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      ..++.=|+|--.|||++....++. + +.|.+-|||-.+++..|       .+|+.-+.  .+--+.+..+|.-+-.-..
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs  281 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS  281 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh
Confidence            345677999999999998887764 5 68999999999998432       34443321  2234577888865432223


Q ss_pred             CCceeEEEEcCCC
Q 025534          173 KESYDVIIGDLAD  185 (251)
Q Consensus       173 ~~~fD~Ii~D~~~  185 (251)
                      ...||.|++|||.
T Consensus       282 n~~fDaIvcDPPY  294 (421)
T KOG2671|consen  282 NLKFDAIVCDPPY  294 (421)
T ss_pred             cceeeEEEeCCCc
Confidence            5789999999984

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.59  E-value=0.52  Score=42.49  Aligned_cols=99  Identities=18%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .++.+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. ..      +.-+.....|..+.+.. . +..+|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d  247 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD  247 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence            3468999998643 23455666766655699999999999988764 21      11111112344444433 2 24689


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+ |...    .+       +.++. ..+.|+++|++++-.
T Consensus       248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG  276 (358)
T ss_pred             EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence            887 4321    11       33455 467899999988643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.37  E-value=0.77  Score=40.73  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+|.+||+|.-+  ++..+.+.....+|+++|.+++..+.+++. ..        ... ...+..+.+    +..|+|++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii   72 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL   72 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence            689999998633  445555432224899999999988777653 10        011 122333333    35799998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ..+...         ..++++. +...++++.+++
T Consensus        73 avp~~~---------~~~v~~~-l~~~l~~~~iv~   97 (307)
T PRK07502         73 CVPVGA---------SGAVAAE-IAPHLKPGAIVT   97 (307)
T ss_pred             CCCHHH---------HHHHHHH-HHhhCCCCCEEE
Confidence            865321         2345555 456677766543

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.21  E-value=0.15  Score=46.11  Aligned_cols=111  Identities=20%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHH---hchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCK---SYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~---~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      .|+++||+|.|.|..+..+-.- +...+++.+|.+|.+-++..   ++.....   .+-|..=+..|- .-+. ..+.|+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~dR-l~lp-~ad~yt  187 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTEDR-LSLP-AADLYT  187 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchhc-cCCC-ccceee
Confidence            5789999999999877665553 55578999999997765543   3322111   111222222331 1111 236788


Q ss_pred             EEEEc-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec-CCC
Q 025534          178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPA  222 (251)
Q Consensus       178 ~Ii~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~-~~p  222 (251)
                      +|++- -.-|.  +....++  ..++. +...++|||.+++-. |.|
T Consensus       188 l~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         188 LAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEEeCCCc
Confidence            77753 22222  1111222  36777 789999999887643 444

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.14  E-value=0.73  Score=36.74  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             eEEEEecCchHHHH--HHHhcCCCcEEEEEECChHHHHHHHhchh---cccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          105 TIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +|.+||+|.++.+.  .++.. + .+|+....+++.++..++.-.   ...+....+++++ ..|..+.+    +.-|+|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-G-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDADII   73 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-T-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-SEE
T ss_pred             CEEEECcCHHHHHHHHHHHHc-C-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----CcccEE
Confidence            58899999998654  33443 3 589999999988887765321   1110001234544 57776666    357999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ++-.|.         ..-++++++ ++..|+++-.++.
T Consensus        74 iiavPs---------~~~~~~~~~-l~~~l~~~~~ii~  101 (157)
T PF01210_consen   74 IIAVPS---------QAHREVLEQ-LAPYLKKGQIIIS  101 (157)
T ss_dssp             EE-S-G---------GGHHHHHHH-HTTTSHTT-EEEE
T ss_pred             EecccH---------HHHHHHHHH-HhhccCCCCEEEE
Confidence            988652         223688998 7999976666654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.00  E-value=0.92  Score=40.60  Aligned_cols=98  Identities=20%  Similarity=0.321  Sum_probs=64.9

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+.+|.+||+|.-+ -+..++--- .+.|+.+|+|..=++.....|.        .|++.......++-. .-.++|++|
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee-~v~~aDlvI  236 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEE-AVKKADLVI  236 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHH-HhhhccEEE
Confidence            46789999887533 333333323 3699999999887776665542        478888887766543 346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ....-|....|  .|.+++.     .+.++||++++
T Consensus       237 gaVLIpgakaP--kLvt~e~-----vk~MkpGsViv  265 (371)
T COG0686         237 GAVLIPGAKAP--KLVTREM-----VKQMKPGSVIV  265 (371)
T ss_pred             EEEEecCCCCc--eehhHHH-----HHhcCCCcEEE
Confidence            87654443334  4665553     45688998876

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.96  E-value=1.7  Score=40.40  Aligned_cols=103  Identities=19%  Similarity=0.281  Sum_probs=58.6

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----------
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----------  170 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-----------  170 (251)
                      ++|.+||+|--+  ++..+++. + -+|+++|+|++.++..++-.           +.+...+..+.+.           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~-G-~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR-Q-KQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence            579999998554  34455554 3 58999999999988654321           0111111111111           


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCC-ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l-~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ...+..|+|++..+.|........+ .-.+..+. +.+.|++|-+++..+.
T Consensus        71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST  120 (415)
T ss_pred             cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence            0113579999988765321111111 22345566 6788998877777664

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.85  E-value=0.71  Score=40.92  Aligned_cols=101  Identities=18%  Similarity=0.315  Sum_probs=58.0

Q ss_pred             CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCC--------CCeEEEEcchHHHHhcCC
Q 025534          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK  173 (251)
Q Consensus       104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~~~~~D~~~~l~~~~  173 (251)
                      ++|.+||+|.-  .++..+++. + .+|+++|.+++.++.+++...........        .++++ ..|..+.+    
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----   77 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV----   77 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence            68999999843  455666554 3 48999999999998877642110000000        11222 23433333    


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..|+|+...+...       -...+++.. +...++++-+++.++
T Consensus        78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t  115 (311)
T PRK06130         78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT  115 (311)
T ss_pred             ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence            45799998865321       112456777 566676666655554

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.78  E-value=0.56  Score=41.48  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.++||++|+|+ |.++.++++..+...|.++|.+++-++.++++.-.+      +.         +   .....+|+|+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~------~~---------~---~~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD------PE---------K---DPRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC------hh---------h---ccCCCCCEEE
Confidence            467899998653 335566777666656888899888777666431111      10         0   0134689888


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      -..-     .       ...++. +.+.|+++|++++-
T Consensus       206 d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~  230 (308)
T TIGR01202       206 DASG-----D-------PSLIDT-LVRRLAKGGEIVLA  230 (308)
T ss_pred             ECCC-----C-------HHHHHH-HHHhhhcCcEEEEE
Confidence            4321     1       133455 46789999998854

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.69  E-value=0.36  Score=42.26  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=62.6

Q ss_pred             CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----ccCC-CC-------CCCeEEEEcchHHH
Q 025534          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEA-FS-------DPRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~~~-~~-------~~rv~~~~~D~~~~  168 (251)
                      ++|.+||+|  ++.++..+++. + .+|+++|++++.++.+++.+..     .... ..       ..++++ ..|.. -
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~-g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~   79 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVA-G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-D   79 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-H
Confidence            479999998  45566777665 3 4899999999999765533210     0000 00       013332 23422 1


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +    +..|+|+...+...       ....++++. +.+.++|+.+++.++.+
T Consensus        80 ~----~~aDlVi~av~e~~-------~~k~~~~~~-l~~~~~~~~il~s~ts~  120 (282)
T PRK05808         80 L----KDADLVIEAATENM-------DLKKKIFAQ-LDEIAKPEAILATNTSS  120 (282)
T ss_pred             h----ccCCeeeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            2    45799998865321       123578888 78889999888766643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=92.66  E-value=2.8  Score=35.50  Aligned_cols=102  Identities=20%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             CCCCeEEEEecCchH----HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-HHHhcCCCc
Q 025534          101 PNPKTIFIMGGGEGS----TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-~~l~~~~~~  175 (251)
                      -+.+-+++..+++|.    ++..++.+....++++|-.+++-....++.+...+   ..+.++|+.+|.. +.+.. -+.
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~-~~~  115 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPG-LKG  115 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhh-ccC
Confidence            355778888665442    33433433344689999999888877777765322   2245799999854 45543 367


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .|++++|.-.        .-+..++++. +  .+.|.|.+++
T Consensus       116 iDF~vVDc~~--------~d~~~~vl~~-~--~~~~~GaVVV  146 (218)
T PF07279_consen  116 IDFVVVDCKR--------EDFAARVLRA-A--KLSPRGAVVV  146 (218)
T ss_pred             CCEEEEeCCc--------hhHHHHHHHH-h--ccCCCceEEE
Confidence            9999999531        1122355554 2  2767776555

The function of this family is unknown.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=92.61  E-value=0.34  Score=38.58  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .-+.-||++|.|.|-+-.++....+..+|.+.|-.      .+.|-..     ..|.-+++.+|+++.+..   .+.+--
T Consensus        27 ~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~------l~~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~~a~   95 (160)
T PF12692_consen   27 GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA------LACHPSS-----TPPEEDLILGDIRETLPALARFGAGAA   95 (160)
T ss_dssp             T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred             CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee------cccCCCC-----CCchHheeeccHHHHhHHHHhcCCceE
Confidence            34578999999999998888887667899999873      2222111     234567999999998865   234444


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ++=.|.-..   .+.....+...+.-.+..+|+|||+++-
T Consensus        96 laHaD~G~g---~~~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   96 LAHADIGTG---DKEKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             EEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEeecCCC---CcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            555554322   1111122223333335799999998873

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.50  E-value=0.48  Score=42.92  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=25.1

Q ss_pred             CCCeEEEEecCch-H-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ..++||++|||+- + ++..|++ .++.+++.||-|.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence            4678999999853 2 4455555 4678999999985

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.49  E-value=0.15  Score=41.38  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             EEEecCchHHHHHHHhcCC-CcEEEEE--ECChHHHHHHH---hchhcccCCCCCCCeEEE-EcchHHHHhc---CCCce
Q 025534          107 FIMGGGEGSTAREILRHKT-VEKVVMC--DIDEEVVEFCK---SYLVVNKEAFSDPRLELV-INDARAELES---RKESY  176 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~-~~~v~~V--Eid~~vi~~a~---~~~~~~~~~~~~~rv~~~-~~D~~~~l~~---~~~~f  176 (251)
                      |.+|=|.-+++..|+++.+ ...+++-  |...++.+...   +++..    +....++++ --|+.+.-..   ...+|
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~----L~~~g~~V~~~VDat~l~~~~~~~~~~F   76 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE----LRELGVTVLHGVDATKLHKHFRLKNQRF   76 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH----HhhcCCccccCCCCCcccccccccCCcC
Confidence            5788899999999988644 4566554  44444444322   22221    123444443 3455443222   34789


Q ss_pred             eEEEEcCCCCCCC---Cc----ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEG---GP----CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~---~p----~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |.|+-+-|+....   +.    ...-.-..||+. ++++|+++|.+.+-.
T Consensus        77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVTl  125 (166)
T PF10354_consen   77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVTL  125 (166)
T ss_pred             CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            9999998854310   00    011223689999 799999999776543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.35  E-value=1.6  Score=35.29  Aligned_cols=96  Identities=17%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ....+|+.|||=+-.....-. ..+..++...|+|.+.-....+.|-.-+  ++.|         .+.......+||+|+
T Consensus        24 ~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv   91 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV   91 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence            355899999997665544331 2234689999999877654433111100  0111         111111246999999


Q ss_pred             EcCCCCCCCCcccCCccHHHH----HHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFY----EFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~----~~~~~~~L~pgG~l~~~~  219 (251)
                      +|||-          .+.+..    +. ++..+++++.++.-+
T Consensus        92 ~DPPF----------l~~ec~~k~a~t-i~~L~k~~~kii~~T  123 (162)
T PF10237_consen   92 IDPPF----------LSEECLTKTAET-IRLLLKPGGKIILCT  123 (162)
T ss_pred             ECCCC----------CCHHHHHHHHHH-HHHHhCccceEEEec
Confidence            99863          122332    44 566778888887643

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.34  E-value=1.1  Score=39.90  Aligned_cols=95  Identities=22%  Similarity=0.243  Sum_probs=58.0

Q ss_pred             CeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      .+||+.|+  |.|..+.++++..+..+|++++.+++-.+.+++.++..      .-+.....|..+.+.. .++.+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence            78999986  45556777888766447999999988888777643321      1111112333444432 235699988


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                       |...    +        ..+.. ..+.|+++|.++..
T Consensus       230 -d~~g----~--------~~~~~-~~~~l~~~G~iv~~  253 (345)
T cd08293         230 -DNVG----G--------EISDT-VISQMNENSHIILC  253 (345)
T ss_pred             -ECCC----c--------HHHHH-HHHHhccCCEEEEE
Confidence             4321    1        11344 46789999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.04  E-value=0.59  Score=39.04  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID  135 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid  135 (251)
                      ...+||++|+|+ |+ ++..|++ .++.+++.+|-|
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence            567899999985 33 4555555 467899999988

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK13699 putative methylase; Provisional

Probab=92.00  E-value=0.53  Score=40.18  Aligned_cols=46  Identities=15%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      ..++.-|||.-||+|+++..+.+..  .+..++|++++..+.+.+.+.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence            3466789999999999999888763  589999999999999988764

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.94  E-value=0.43  Score=36.17  Aligned_cols=89  Identities=20%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CC-CceeEEEEcCCCCCCC
Q 025534          112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYDVIIGDLADPIEG  189 (251)
Q Consensus       112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD~Ii~D~~~~~~~  189 (251)
                      |-|..+..++++.+ .+|++++.++.-.+.++++-...       -+.....|..+.++. .+ +.+|+|+-...     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence            45788888898877 89999999999999999863110       011111224445544 23 47999996542     


Q ss_pred             CcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       190 ~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                             ..+.++. ..+.|+++|++++-...
T Consensus        68 -------~~~~~~~-~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 -------SGDTLQE-AIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             -------SHHHHHH-HHHHEEEEEEEEEESST
T ss_pred             -------cHHHHHH-HHHHhccCCEEEEEEcc
Confidence                   1245666 57899999999876543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=91.88  E-value=0.94  Score=37.11  Aligned_cols=100  Identities=16%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHHH
Q 025534          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL  169 (251)
Q Consensus       105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~l  169 (251)
                      +|.+||+|.=+  ++..++.. + .+|+.+|.|++.++.+++++...      ...+.       -.++++ ..|..+  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~--   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-G-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE--   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-T-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-C-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence            58899998755  34444554 3 69999999999999888765420      01011       123332 233221  


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                        . ...|+|+-..++..       -..+++|++ +.+.+.|+-+|+.|+.
T Consensus        76 --~-~~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   76 --A-VDADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS  115 (180)
T ss_dssp             --G-CTESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred             --H-hhhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence              2 26899998765421       124688999 8999999999998874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.85  E-value=2  Score=36.16  Aligned_cols=99  Identities=22%  Similarity=0.336  Sum_probs=60.1

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~~~~fD~  178 (251)
                      .++.+||+.|+|+ |..+..+++..+ .+|++++.+++-.+.+++....       .-+.....+...-+ ....+.+|+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence            4568999999986 555666666655 6899999999888887654210       00111111211111 123467999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |+.....     +       ..+.. +.+.|+++|.++....
T Consensus       205 vi~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~~~  233 (271)
T cd05188         205 VIDAVGG-----P-------ETLAQ-ALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EEECCCC-----H-------HHHHH-HHHhcccCCEEEEEcc
Confidence            9865321     0       23455 5678899999886543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=91.82  E-value=3.4  Score=35.83  Aligned_cols=126  Identities=20%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             CCCCeEEEEecCchHHHHH---HHhcC--CCcEEEEEECCh--------------------------HHHHHHHhchhcc
Q 025534          101 PNPKTIFIMGGGEGSTARE---ILRHK--TVEKVVMCDIDE--------------------------EVVEFCKSYLVVN  149 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~---l~~~~--~~~~v~~VEid~--------------------------~vi~~a~~~~~~~  149 (251)
                      .-|..|+++|+--|+.+..   +++..  ...++.+.|.=+                          .-.+..+++|...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            3478999999988876543   33321  235677777422                          1234444554322


Q ss_pred             cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCCh
Q 025534          150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT  228 (251)
Q Consensus       150 ~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~  228 (251)
                      +  +.+++++++.|+..+-+... .+++-++-+|.--   ..|     |.+.++. +..+|.|||++++.-     +.. 
T Consensus       153 g--l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Yes-----T~~aLe~-lyprl~~GGiIi~DD-----Y~~-  215 (248)
T PF05711_consen  153 G--LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YES-----TKDALEF-LYPRLSPGGIIIFDD-----YGH-  215 (248)
T ss_dssp             T--TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHH-----HHHHHHH-HGGGEEEEEEEEESS-----TTT-
T ss_pred             C--CCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHH-----HHHHHHH-HHhhcCCCeEEEEeC-----CCC-
Confidence            1  24579999999999888653 4677777777421   012     5678888 799999999999864     333 


Q ss_pred             HHHHHHHHHHHhhCC
Q 025534          229 EVFSCIYNTLRQVFK  243 (251)
Q Consensus       229 ~~~~~i~~~l~~~F~  243 (251)
                      +.-++...-+++...
T Consensus       216 ~gcr~AvdeF~~~~g  230 (248)
T PF05711_consen  216 PGCRKAVDEFRAEHG  230 (248)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcC
Confidence            333444444554443

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.81  E-value=0.64  Score=38.34  Aligned_cols=126  Identities=23%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCC--------CCCCCeEEEEcchHHHHhcCC
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESRK  173 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~--------~~~~rv~~~~~D~~~~l~~~~  173 (251)
                      +|-++|+|==++  +..+++. + -+|+++|+|++.++..++-. +.....        ....|+++. .|..+.+    
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-G-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-T-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECCCcchHHHHHHHHhC-C-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            688898885543  3444443 3 59999999999999877532 221100        012233332 4444433    


Q ss_pred             CceeEEEEcCCCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      ...|++++..+.|... +....-+-....+. +.+.|+++-++++.+..|- -...+.++.+++...
T Consensus        75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvpp-Gtt~~~~~~ile~~~  139 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVPP-GTTEELLKPILEKRS  139 (185)
T ss_dssp             HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSST-THHHHHHHHHHHHHC
T ss_pred             hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEEE-eeehHhhhhhhhhhc
Confidence            3589888887644311 11122223456677 6889999888888775431 112224445554433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.76  E-value=0.76  Score=41.93  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+ |+ ++..|++ .++.+++.||-|.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~-~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAG-AGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence            457999999985 33 3455554 5788999999886

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.69  E-value=1.4  Score=32.77  Aligned_cols=92  Identities=26%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             EEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeEEE
Q 025534          106 IFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDVII  180 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~Ii  180 (251)
                      |+++|+|.  +++.+++.  .....|+++|.|++.++.+++.           .+.++.+|+.+.  +++.+ ++.|.|+
T Consensus         1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-SH--HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence            56777764  44443331  1225899999999999988863           267888998754  44332 6899998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...+..     .   +.....  ..+.+.|...+++...
T Consensus        68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARVN   97 (116)
T ss_dssp             EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEES
T ss_pred             EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEEC
Confidence            8764321     0   112222  2456788888887653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.50  E-value=0.94  Score=40.78  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             CCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCC----CCCCeEEEEcchHHHHhc
Q 025534          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES  171 (251)
Q Consensus       103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~----~~~rv~~~~~D~~~~l~~  171 (251)
                      -++|-+||+|  +.+++..++.. + .+|+.+|.+++.++.+++.+...     ....    ...++++. .|..+.+  
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a-G-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--   81 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH-G-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--   81 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence            4789999998  44455666654 3 58999999999887766543210     0000    01244433 2433332  


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                        ..-|+|+-..++..       -...++|++ +.+.++|+.+|..|+.
T Consensus        82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS  120 (321)
T PRK07066         82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS  120 (321)
T ss_pred             --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence              45799998876422       123577888 7888999888877764

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.44  E-value=0.48  Score=40.65  Aligned_cols=82  Identities=20%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHH---hcCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAEL---ESRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l---~~~~~~f  176 (251)
                      +.-++||||.|.-.+--.+--+ .+ -+.++-|+|+..++.|+.....|..  ....+++... |-...+   ....++|
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~--l~~~I~lr~qk~~~~if~giig~nE~y  154 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPG--LERAIRLRRQKDSDAIFNGIIGKNERY  154 (292)
T ss_pred             CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcc--hhhheeEEeccCcccccccccccccee
Confidence            3457899998876654333332 23 5899999999999999988765421  1123444332 211111   1235899


Q ss_pred             eEEEEcCCCC
Q 025534          177 DVIIGDLADP  186 (251)
Q Consensus       177 D~Ii~D~~~~  186 (251)
                      |+.+|++|.+
T Consensus       155 d~tlCNPPFh  164 (292)
T COG3129         155 DATLCNPPFH  164 (292)
T ss_pred             eeEecCCCcc
Confidence            9999999854

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=91.41  E-value=1.8  Score=38.63  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      .++++||+.|+|. |..+.++++..+...+++++.+++-.+.++++ +..      .-+.....+..+.+.+  ....+|
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d  237 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD  237 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence            4568999997642 23445666666655799999999888888864 211      1111111232222322  235699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+....     +       .+.+.. +.++|+++|+++..
T Consensus       238 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~  265 (351)
T cd08285         238 AVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISNV  265 (351)
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence            8885322     1       134556 57789999988743

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.37  E-value=2  Score=37.24  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=55.9

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      +..+||++|+|+ |.++..+++..+..+|++++.+++-.+.++++-. ..  .-++      .+..+.+..  ....+|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~~--~i~~------~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-TA--LAEP------EVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-cE--ecCc------hhhHHHHHHHhCCCCCCE
Confidence            467899998753 2234556666565569999999998888887421 00  0011      111122221  2346999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+--.-     .       ...++. +.+.|+++|.++...
T Consensus       191 vid~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       191 ALEFSG-----A-------TAAVRA-CLESLDVGGTAVLAG  218 (280)
T ss_pred             EEECCC-----C-------hHHHHH-HHHHhcCCCEEEEec
Confidence            875321     1       133455 467899999988644

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.36  E-value=0.82  Score=38.56  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID  135 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid  135 (251)
                      ...+|+++|+|+ |+ ++..|++ .+..+++.+|.|
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            467899999985 33 4555555 467899999999

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.24  E-value=1.5  Score=38.47  Aligned_cols=98  Identities=21%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~  178 (251)
                      ....+||+.|+|. |..+.++++..+ .+|++++.+++..+.++++ ...      .-+.....+..+.++ ...+.+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence            3467899987653 566677777655 5799999999998888763 211      001111112222222 23467998


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+....      .      .+.++. +.+.|+++|.++...
T Consensus       236 vid~~g------~------~~~~~~-~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVG------T------QPTFED-AQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCC------C------HHHHHH-HHHHhhcCCEEEEEC
Confidence            875421      1      234566 578999999988643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.13  E-value=1.9  Score=37.88  Aligned_cols=102  Identities=22%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC--------CCCeEEEEcchHH
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS--------DPRLELVINDARA  167 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~--------~~rv~~~~~D~~~  167 (251)
                      ++|.+||+|.-+  ++..+++. + .+|+.+|.+++.++.+++.....      ...+.        ..++++ ..|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-G-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence            579999998544  44445543 3 48999999999988877543100      00000        023332 344433


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+    +.-|+||...+...       -...+++++ +.+.++++-+++.++.
T Consensus        81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS  121 (287)
T PRK08293         81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS  121 (287)
T ss_pred             Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence            33    45799998876321       123467777 6778888877766653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.10  E-value=0.94  Score=39.94  Aligned_cols=90  Identities=21%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+|+++|+|.  |.+++.+.+......|++.|.+....+.+.+. ...     +.   . ..+   .........|+||+
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~---~-~~~---~~~~~~~~aD~Viv   70 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DE---L-TVA---GLAEAAAEADLVIV   70 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----cc---c-ccc---hhhhhcccCCEEEE
Confidence            5789999873  45666666654445688888888877776643 111     00   0 011   11112356899999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ..|-.         .+.+++++ +...|++|.+++
T Consensus        71 avPi~---------~~~~~l~~-l~~~l~~g~iv~   95 (279)
T COG0287          71 AVPIE---------ATEEVLKE-LAPHLKKGAIVT   95 (279)
T ss_pred             eccHH---------HHHHHHHH-hcccCCCCCEEE
Confidence            86521         24677888 677888877665

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.10  E-value=1.2  Score=36.23  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      +|+++|+|+ |+ ++..+++ .+..+++.+|.|.
T Consensus         1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence            589999984 43 4555555 4678999999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.08  E-value=2.7  Score=37.24  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      ..+.+||++|+|+=+ .+.++++..+..+|++++.+++-.+.+++. ...      .-+.....+ .+-+.+ . ...+|
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d  233 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD  233 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence            346899999764222 345566665654499999999988888764 211      001111122 222221 2 34799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-....            ...+.. ..+.|+++|.+++..
T Consensus       234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g  262 (339)
T cd08239         234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG  262 (339)
T ss_pred             EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence            98854321            123344 457899999988643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.05  E-value=1.4  Score=38.72  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc--------c-cCCCC-------CCCeEEEEcch
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFS-------DPRLELVINDA  165 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--------~-~~~~~-------~~rv~~~~~D~  165 (251)
                      ++|.+||+|.  +.++..+++. + .+|+++|.+++.++.+++....        . .....       ..+++.. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            6899999994  3455666654 3 4899999999999876543211        0 00000       0122221 232


Q ss_pred             HHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       166 ~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +-+    +..|+|+...+...       -...+++++ +.+.++|+.+++.++
T Consensus        81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t  121 (291)
T PRK06035         81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT  121 (291)
T ss_pred             -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence             222    35799998875321       113577888 688888888777554

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.98  E-value=1.1  Score=37.70  Aligned_cols=74  Identities=15%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             HhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc
Q 025534           96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (251)
Q Consensus        96 ~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~  171 (251)
                      |+......++||++|+|.=+.  ++.+++. + ++|++|+.+  ++..+++++           .+++++.++.....  
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~-g-a~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d--   66 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKA-G-AQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI--   66 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH--
Confidence            333445678999999986554  3455553 3 689988654  444444332           36777776643221  


Q ss_pred             CCCceeEEEEcCCC
Q 025534          172 RKESYDVIIGDLAD  185 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~  185 (251)
                       -..+|+|+..+.+
T Consensus        67 -l~~~~lVi~at~d   79 (205)
T TIGR01470        67 -LEGAFLVIAATDD   79 (205)
T ss_pred             -hCCcEEEEECCCC
Confidence             1468999887554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.89  E-value=3.2  Score=38.90  Aligned_cols=90  Identities=14%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+++|+++|+|.=+.. ...++..+ .+|+++|+|+.-...+... +          .++.  +..+.+    +..|+|+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVVI  272 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIFV  272 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEEE
Confidence            6789999999864432 22334345 4899999998665444331 1          1211  223333    3689998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ...      +.      ...+.....+.+|+|++++ |.++.
T Consensus       273 ~aT------G~------~~vI~~~~~~~mK~Gaili-NvG~~  301 (425)
T PRK05476        273 TAT------GN------KDVITAEHMEAMKDGAILA-NIGHF  301 (425)
T ss_pred             ECC------CC------HHHHHHHHHhcCCCCCEEE-EcCCC
Confidence            642      11      1223311356788888765 66554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.81  E-value=1.3  Score=39.02  Aligned_cols=101  Identities=12%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCCC-------CCeEEEEcchHHH
Q 025534          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~~~~~D~~~~  168 (251)
                      ++|-+||+|  ++.++..+++. + .+|+.+|.+++.++.+++.+...      ......       .+++ ...|. +-
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA-G-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH
Confidence            589999999  44566666665 4 58999999999999876553210      000000       1232 22443 22


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC-CCCcEEEEecC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG  220 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L-~pgG~l~~~~~  220 (251)
                      +    ...|+|+-..++..       -...++|.. +.+.+ +|+.+++.|+.
T Consensus        82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS  122 (286)
T PRK07819         82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS  122 (286)
T ss_pred             h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence            2    45799998876422       123567787 67777 78888887764

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=90.76  E-value=0.87  Score=40.43  Aligned_cols=75  Identities=25%  Similarity=0.412  Sum_probs=44.2

Q ss_pred             EEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE----EEcchHHHHh--c--CCC
Q 025534          106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAELE--S--RKE  174 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~----~~~D~~~~l~--~--~~~  174 (251)
                      ||+-|+| |+++.++.++   .+..++..+|.|+.-+-..++.+....   .++++++    +.+|.++.-+  .  ...
T Consensus         1 VLVTGa~-GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~   76 (293)
T PF02719_consen    1 VLVTGAG-GSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY   76 (293)
T ss_dssp             EEEETTT-SHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred             CEEEccc-cHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence            5666664 7777666552   234799999999999888887764211   2345654    5889877532  2  234


Q ss_pred             ceeEEEEcCC
Q 025534          175 SYDVIIGDLA  184 (251)
Q Consensus       175 ~fD~Ii~D~~  184 (251)
                      +.|+|+.-+.
T Consensus        77 ~pdiVfHaAA   86 (293)
T PF02719_consen   77 KPDIVFHAAA   86 (293)
T ss_dssp             T-SEEEE---
T ss_pred             CCCEEEEChh
Confidence            8999999876

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.71  E-value=2.4  Score=39.50  Aligned_cols=90  Identities=13%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|+++|+|.=+. ...+++..+ .+|+++|.|+.-.+.|++. +          .+..  +..+.+    ...|+|
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v----~~aDVV  261 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-G----------YEVM--TMEEAV----KEGDIF  261 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH----cCCCEE
Confidence            3578999999997543 333445455 4899999999888877763 1          1111  112333    357999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +....     .       ...+.....+.+++||+++ +.+.
T Consensus       262 I~atG-----~-------~~~i~~~~l~~mk~Ggilv-nvG~  290 (413)
T cd00401         262 VTTTG-----N-------KDIITGEHFEQMKDGAIVC-NIGH  290 (413)
T ss_pred             EECCC-----C-------HHHHHHHHHhcCCCCcEEE-EeCC
Confidence            86421     1       1233331357899999876 4443

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.66  E-value=1.2  Score=40.37  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=25.1

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+-+  ++..|++ .++.+++.||-|.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence            46789999998533  4455555 4678999999983

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.60  E-value=2.1  Score=37.84  Aligned_cols=96  Identities=16%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +..+||+.|+|+ |..+..+++..+..++++++.+++..+.+++. ...      .-+.....+..... .....+|+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~------~vi~~~~~~~~~~~-~~~~~vd~vl  236 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD------ETVNLARDPLAAYA-ADKGDFDVVF  236 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC------EEEcCCchhhhhhh-ccCCCccEEE
Confidence            568899988765 45666677765544799999999988877764 211      00000001112222 1224599988


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ....     .       ...++. +.+.|+++|+++..
T Consensus       237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~  261 (339)
T cd08232         237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV  261 (339)
T ss_pred             ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            6432     1       123556 57889999998854

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK10458 DNA cytosine methylase; Provisional

Probab=90.57  E-value=1.2  Score=42.19  Aligned_cols=127  Identities=15%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-------------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-------------  169 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-------------  169 (251)
                      .-+++++-||.|++..-+-.. +...|.++|+|+.+.+.-+.++..      +|....+.+|..+.-             
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA  160 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence            458999999999999887665 456788999999999998887631      233344445554431             


Q ss_pred             ---hcCCCceeEEEEcCCCC-CC-CCc----------------ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--C
Q 025534          170 ---ESRKESYDVIIGDLADP-IE-GGP----------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S  226 (251)
Q Consensus       170 ---~~~~~~fD~Ii~D~~~~-~~-~~p----------------~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~  226 (251)
                         ...-...|+++.-+|.+ +. .+.                ...| -.++++. + +.++|.-+++=|+  ++..  .
T Consensus       161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~L-f~~~~ri-i-~~~kPk~fvlENV--~gl~s~~  235 (467)
T PRK10458        161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTL-FFDVARI-I-DAKRPAIFVLENV--KNLKSHD  235 (467)
T ss_pred             hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccH-HHHHHHH-H-HHhCCCEEEEeCc--Hhhhccc
Confidence               11123689999887742 21 110                0011 1455554 3 4678876555443  2222  2


Q ss_pred             ChHHHHHHHHHHHhh
Q 025534          227 HTEVFSCIYNTLRQV  241 (251)
Q Consensus       227 ~~~~~~~i~~~l~~~  241 (251)
                      ....+..+++.|.+.
T Consensus       236 ~g~~f~~i~~~L~~l  250 (467)
T PRK10458        236 KGKTFRIIMQTLDEL  250 (467)
T ss_pred             ccHHHHHHHHHHHHc
Confidence            234677888888765

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.47  E-value=7.8  Score=36.10  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=59.9

Q ss_pred             CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|+++|+|.=+.. ...++..+ .+|+++|.||.-...++..           ..++.  +..+.+    ...|+|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-----------G~~v~--~leeal----~~aDVV  254 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-----------GFRVM--TMEEAA----KIGDIF  254 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-----------CCEeC--CHHHHH----hcCCEE
Confidence            46789999999875433 33444444 5899999999654444321           11111  222333    357998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      |....     .       ...+.......+|+|++++ |.+.....-+.+.+.+....-+.+-+++.-
T Consensus       255 ItaTG-----~-------~~vI~~~~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~  309 (406)
T TIGR00936       255 ITATG-----N-------KDVIRGEHFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDE  309 (406)
T ss_pred             EECCC-----C-------HHHHHHHHHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEE
Confidence            76421     1       1222211346788888765 665432212333343333332334444433

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.39  E-value=5  Score=32.56  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHh---cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ..+++|.+||+|.  +++.+++   -.+ .+|.++|.++.........           .+  ...+..+.++    +.|
T Consensus        34 l~g~tvgIiG~G~--IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aD   93 (178)
T PF02826_consen   34 LRGKTVGIIGYGR--IGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QAD   93 (178)
T ss_dssp             STTSEEEEESTSH--HHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-S
T ss_pred             cCCCEEEEEEEcC--CcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhh
Confidence            3578999999964  4443333   345 5999999999876622221           11  2235556653    589


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|++..+...   ...++.+.++|+.     +|+|. +++|.+
T Consensus        94 iv~~~~plt~---~T~~li~~~~l~~-----mk~ga-~lvN~a  127 (178)
T PF02826_consen   94 IVSLHLPLTP---ETRGLINAEFLAK-----MKPGA-VLVNVA  127 (178)
T ss_dssp             EEEE-SSSST---TTTTSBSHHHHHT-----STTTE-EEEESS
T ss_pred             hhhhhhcccc---ccceeeeeeeeec-----cccce-EEEecc
Confidence            9999877321   1246778887765     56655 556874

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.36  E-value=4  Score=38.79  Aligned_cols=113  Identities=16%  Similarity=0.178  Sum_probs=62.0

Q ss_pred             CeEEEEecCchHHHHH--HHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCC-------CCCeEEEEcchHHHHhcCC
Q 025534          104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK  173 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-------~~rv~~~~~D~~~~l~~~~  173 (251)
                      .+|.++|+|-.++...  +++.....+|+++|+|++.++..++-.. .....+.       ..+++ ...|..+.+    
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i----   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV----   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----
Confidence            3689999988776543  4443222579999999999998876421 1110000       00111 112221112    


Q ss_pred             CceeEEEEcCCCCCCC-C-----cccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~-~-----p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ..-|+||+..+-|... +     ....-+-.+..+. +.++|++|-++++.+..|
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp  130 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP  130 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence            3578888866534310 1     1111123456666 678898877777776544

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=90.18  E-value=0.38  Score=40.18  Aligned_cols=115  Identities=16%  Similarity=0.045  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchh-cccCC--CCCCCeEEEEcchHHHHhcCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLV-VNKEA--FSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~-~~~~~--~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      ..+..|.|+=-|+|..++.+...- +...|+++-.++ ....+..+-+ ++...  -...+++.+-.+...+.  ..+.-
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~  123 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL  123 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence            466899999999999999888752 224666654433 2222222110 00000  01123444444443333  34677


Q ss_pred             eEEEEcCCCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++....++... .....-+...++++ +.+.|||||++.+..
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~d  166 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVED  166 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEEe
Confidence            7777765543211 11112334678888 799999999998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.15  E-value=1.2  Score=39.20  Aligned_cols=102  Identities=21%  Similarity=0.321  Sum_probs=62.1

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCCC-------CCeEEEEcchHHH
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~~~~~D~~~~  168 (251)
                      ++|.+||+|.-+  ++..+++. + .+|+.+|.+++.++.+.+.+..+      ......       .++++. .|. +-
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA-G-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence            679999998544  45555554 3 48999999999988765432110      000000       223332 332 22


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +    ...|+|+...++..       -....+++. +...++|+.+++.++.+
T Consensus        81 ~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~  121 (292)
T PRK07530         81 L----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS  121 (292)
T ss_pred             h----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence            2    46899999876421       113467788 78889998888766643

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.95  E-value=2.5  Score=37.85  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .++.+||++|+|. |..+..+++..+. +|++++.+++-.+.+++.
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~  209 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF  209 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence            3468999999855 4455666776654 799999999999888763

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=89.71  E-value=1.6  Score=38.49  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=60.6

Q ss_pred             CCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh-----ccc-CCCCC-------CCeEEEEcchHH
Q 025534          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA  167 (251)
Q Consensus       103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----~~~-~~~~~-------~rv~~~~~D~~~  167 (251)
                      -++|.+||+|  +..++..+++. + .+|+++|.+++.++.+++.+.     +.. .....       .+++ ...|. +
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~   79 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAA-G-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E   79 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence            3689999998  34456666664 3 589999999999886654322     000 00000       0122 22332 2


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      -+    +.-|+|+...++..       -....++++ +.+.++|+.+++.++.
T Consensus        80 ~~----~~aD~Vieav~e~~-------~~k~~v~~~-l~~~~~~~~il~s~tS  120 (295)
T PLN02545         80 EL----RDADFIIEAIVESE-------DLKKKLFSE-LDRICKPSAILASNTS  120 (295)
T ss_pred             Hh----CCCCEEEEcCccCH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            22    45799998876421       112467777 6778888887776654

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=89.67  E-value=0.75  Score=40.83  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      ..+.+|..||.|+..+..++.+.|  ++|++||+||.-|.+-+-.+
T Consensus        62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lkl  105 (414)
T COG5379          62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKL  105 (414)
T ss_pred             CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHH
Confidence            456889999999877888888764  69999999999998876544

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=89.66  E-value=1.7  Score=36.24  Aligned_cols=34  Identities=18%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+ |. ++..|++ .++.+++.+|-|.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~-~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence            357899999985 22 3444444 5788999999774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.65  E-value=1.2  Score=41.16  Aligned_cols=73  Identities=18%  Similarity=0.280  Sum_probs=46.6

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCceeEE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI  179 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~fD~I  179 (251)
                      ++||+||||.=+  ++..++++ +..+|++.|.+++-.+.+....        .++++.+.-|+.+.  +...=..+|+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V   72 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV   72 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence            589999995321  23344444 3479999999988877776542        34677777666543  11111456999


Q ss_pred             EEcCCC
Q 025534          180 IGDLAD  185 (251)
Q Consensus       180 i~D~~~  185 (251)
                      |.-.+.
T Consensus        73 In~~p~   78 (389)
T COG1748          73 INAAPP   78 (389)
T ss_pred             EEeCCc
Confidence            987763

>PLN02740 Alcohol dehydrogenase-like

Probab=89.62  E-value=3.9  Score=37.23  Aligned_cols=99  Identities=14%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f  176 (251)
                      ....+||++|+|.=+ .+..+++..+..+|++++.+++-.+.+++. ...      .-+....  .|..+.+.. ..+.+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~  269 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT------DFINPKDSDKPVHERIREMTGGGV  269 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCC
Confidence            346899999874322 345566666655799999999999999764 211      1111111  123333332 22369


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+|+--.-     .+       +.++. ..+.++++ |++++-.
T Consensus       270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEEc
Confidence            98875431     11       33445 45678886 8876543

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=89.54  E-value=2  Score=41.39  Aligned_cols=79  Identities=24%  Similarity=0.389  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc----CCC
Q 025534          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKE  174 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~  174 (251)
                      .+++||+-|+| |+++.++.+.   .+.+++...|.|+.-+...++.+...   +...+++++.+|.++.-+-    .+-
T Consensus       249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence            56888888876 7777666552   24579999999999998887766532   1247899999999886331    235


Q ss_pred             ceeEEEEcCC
Q 025534          175 SYDVIIGDLA  184 (251)
Q Consensus       175 ~fD~Ii~D~~  184 (251)
                      +.|+|+..+.
T Consensus       325 kvd~VfHAAA  334 (588)
T COG1086         325 KVDIVFHAAA  334 (588)
T ss_pred             CCceEEEhhh
Confidence            6999999876

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=89.44  E-value=0.31  Score=42.82  Aligned_cols=100  Identities=17%  Similarity=0.110  Sum_probs=68.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +...-++++|||.|-...-   .+ ...+.+.|+....+..+++-          ....+..+|+.+.. ...+.||.++
T Consensus        44 ~~gsv~~d~gCGngky~~~---~p-~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~l  108 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV---NP-LCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAAL  108 (293)
T ss_pred             CCcceeeecccCCcccCcC---CC-cceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccch
Confidence            4467799999999865432   23 46899999999988888753          11267778877643 3468899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-+.-++..   ...-....+++ +.+.|+|||...+..
T Consensus       109 siavihhls---T~~RR~~~l~e-~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  109 SIAVIHHLS---TRERRERALEE-LLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhhh---hHHHHHHHHHH-HHHHhcCCCceEEEE
Confidence            876533210   11223467888 689999999766543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=89.38  E-value=4.3  Score=31.44  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc-hHHHHhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~l~~~~~~fD  177 (251)
                      .+.++||+||.|+-+  ++..++.. +..+|+.+.-+.+-.+...+.++       ...++++.-+ ..+.+    .++|
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D   77 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD   77 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence            367899999997543  34455554 66789999999765444333331       2345554433 22233    4799


Q ss_pred             EEEEcCCC
Q 025534          178 VIIGDLAD  185 (251)
Q Consensus       178 ~Ii~D~~~  185 (251)
                      +||.-.+.
T Consensus        78 ivI~aT~~   85 (135)
T PF01488_consen   78 IVINATPS   85 (135)
T ss_dssp             EEEE-SST
T ss_pred             eEEEecCC
Confidence            99987664

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=89.37  E-value=1.5  Score=36.49  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|+|+ |. ++..|+. .++.+++.+|-|.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~-~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVL-SGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence            457899999975 22 3344444 5788999999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.34  E-value=3.4  Score=36.82  Aligned_cols=90  Identities=10%  Similarity=0.028  Sum_probs=54.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||+.|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +..         .++..+  +   ...+.+|++
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~---------~vi~~~--~---~~~~~~d~~  227 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA---------SAGGAY--D---TPPEPLDAA  227 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc---------eecccc--c---cCcccceEE
Confidence            3467999999643 334566667655 4799999999988888874 110         011000  0   112458876


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....     .+       +.+.. ..+.|+++|++++-.
T Consensus       228 i~~~~-----~~-------~~~~~-~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       228 ILFAP-----AG-------GLVPP-ALEALDRGGVLAVAG  254 (329)
T ss_pred             EECCC-----cH-------HHHHH-HHHhhCCCcEEEEEe
Confidence            64321     11       23555 467899999987643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.30  E-value=3.2  Score=37.40  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f  176 (251)
                      .++.+||+.|+  |.|.++.++++..+ .+|++++.+++-.+.+++.++..      .-+.... .|..+.+.. .++.+
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv  229 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI  229 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence            35688999997  35556777888765 47999999998888876433311      1111111 133333332 23469


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+ |..     +.       ..+.. ..+.|+++|.+++-.
T Consensus       230 D~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~G  258 (348)
T PLN03154        230 DIYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVCG  258 (348)
T ss_pred             EEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence            9888 432     11       23455 467899999988643

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=89.22  E-value=1.8  Score=37.75  Aligned_cols=101  Identities=20%  Similarity=0.341  Sum_probs=48.6

Q ss_pred             CCCCCeEEEEecCchH--H-HHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC
Q 025534          100 HPNPKTIFIMGGGEGS--T-AREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~--~-~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~  174 (251)
                      .|...|||.+|.|+--  . +...+++  |..+.++-.|+++-+                ...-..+.+|.+.+.  .+.
T Consensus        59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----------------SDa~~~~~~Dc~t~~--~~~  120 (299)
T PF06460_consen   59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----------------SDADQSIVGDCRTYM--PPD  120 (299)
T ss_dssp             --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSSEEEES-GGGEE--ESS
T ss_pred             eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----------------cccCCceeccccccC--CCC
Confidence            4677899999998632  1 1222332  444566667765422                123456778987764  468


Q ss_pred             ceeEEEEcCCCCCCCC------cccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          175 SYDVIIGDLADPIEGG------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +||+||+|.+++....      ....++ .-+..- ++..|+-||.+++...
T Consensus       121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~-i~~kLaLGGSvaiKiT  170 (299)
T PF06460_consen  121 KFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGF-IKEKLALGGSVAIKIT  170 (299)
T ss_dssp             -EEEEEE----TTS-SS-S------THH-HHHHHH-HHHHEEEEEEEEEEE-
T ss_pred             cccEEEEecccccccccccccCCccccH-HHHHHH-HHhhhhcCceEEEEee
Confidence            9999999998643211      011121 122232 5789999999998763

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=89.20  E-value=4.5  Score=37.26  Aligned_cols=103  Identities=19%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             CCCeEEEEec--CchHHHHHHHhcC--CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE----cchHHHHhc-C
Q 025534          102 NPKTIFIMGG--GEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-R  172 (251)
Q Consensus       102 ~~~~VL~iG~--G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~----~D~~~~l~~-~  172 (251)
                      ...+||++|+  +-|..+.++++..  +..+|+++|.+++-++.+++.++.... .......++.    .|..+.+.. +
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t  253 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT  253 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence            3478999984  3455666677753  234799999999999999886431100 0000111121    234344432 2


Q ss_pred             -CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       173 -~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                       +..+|+|+....     .+       ..+.. ..+.|+++|.+++.
T Consensus       254 ~g~g~D~vid~~g-----~~-------~~~~~-a~~~l~~~G~~v~~  287 (410)
T cd08238         254 GGQGFDDVFVFVP-----VP-------ELVEE-ADTLLAPDGCLNFF  287 (410)
T ss_pred             CCCCCCEEEEcCC-----CH-------HHHHH-HHHHhccCCeEEEE
Confidence             346998886532     11       34455 46788988866544

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=89.09  E-value=0.099  Score=46.26  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CCCCeEEEEecCchHHHH-HHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAR-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .....|.|+=.|-|.++. .+.+ .++..|.++|.||..++..|+.+..|.   ...|.+++.+|-|.-  .....-|-|
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrV  266 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRV  266 (351)
T ss_pred             cccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhe
Confidence            345779999999999887 5555 467899999999999999999987664   345777788886543  235678888


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      .+-.-
T Consensus       267 nLGLl  271 (351)
T KOG1227|consen  267 NLGLL  271 (351)
T ss_pred             eeccc
Confidence            87653

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=89.06  E-value=2.1  Score=41.07  Aligned_cols=104  Identities=14%  Similarity=0.283  Sum_probs=65.4

Q ss_pred             CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----c-cCCCC-------CCCeEEEEcchH
Q 025534          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR  166 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~~~~~D~~  166 (251)
                      +-++|-+||+|.  ++++..+++. + -.|+.+|.+++.++.+.++...     . .+.+.       -.+++.. .|..
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~   82 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQA-G-HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA   82 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence            457899999984  3466666664 3 5899999999999987655421     0 00000       0134433 2322


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      + +    ...|+||...++..       -....+|.. +.+.++|+.+++.|+.+
T Consensus        83 ~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt  124 (507)
T PRK08268         83 D-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS  124 (507)
T ss_pred             H-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            2 2    36899999877532       113467777 67888888888888754

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=89.02  E-value=1.1  Score=36.22  Aligned_cols=107  Identities=20%  Similarity=0.207  Sum_probs=54.0

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-C--CCCCeEEEEcch-------HHHHh
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDA-------RAELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~--~~~rv~~~~~D~-------~~~l~  170 (251)
                      +|.+|+++|.|.=+. +.++++.-+ .+++..|.+++..+..+......-.. .  ...+-.+-..|.       ...+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            578999999986553 455555445 58999999999888777654321000 0  000000000010       11111


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      +.-..+|+||....-+....  ..|.+.+..+.     |+|+-+++
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~--P~lvt~~~~~~-----m~~gsvIv  136 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRA--PRLVTEEMVKS-----MKPGSVIV  136 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS-----SBEHHHHHT-----SSTTEEEE
T ss_pred             HHHhhCcEEeeecccCCCCC--CEEEEhHHhhc-----cCCCceEE
Confidence            11246999998764333212  36888876554     55655554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02827 Alcohol dehydrogenase-like

Probab=89.00  E-value=4.1  Score=37.17  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f  176 (251)
                      .++.+||+.|+|+= .++.++++..+...|++++.+++-.+.+++. ...      .-+....  .|..+.+.. ....+
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~  264 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA  264 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence            34689999986432 2345566665655799999999988888764 211      0011111  133333332 23369


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+|+-..-     .+       ..+.. ..+.|+++ |++++..
T Consensus       265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence            98884321     11       23444 45678898 9987643

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=88.99  E-value=0.37  Score=41.58  Aligned_cols=45  Identities=31%  Similarity=0.423  Sum_probs=34.3

Q ss_pred             CCeEEEEecCchHHHHHHHhc-C-------CCcEEEEEECChHHHHHHHhchh
Q 025534          103 PKTIFIMGGGEGSTAREILRH-K-------TVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~-~-------~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      +-+|+++|.|+|.++.-+++. .       ...+++.||++|.+.+.-++.+.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            478999999999999888773 1       12489999999999988887664

; PDB: 4F3N_A 1ZKD_B.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.96  E-value=2.8  Score=36.73  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=25.6

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+|+++|+|+ |+...+.+...++.+++.+|.|.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            567999999984 44444444445778999999884

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=88.79  E-value=3.2  Score=39.64  Aligned_cols=111  Identities=12%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcCCCceeE
Q 025534          104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~~~~fD~  178 (251)
                      ..|.+.-||+|++.....+.    .....+++-|+++.+...++.+.-++..  ..+..+...+|-.. +-.....+||.
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence            68999999999988765432    1224689999999999999988644321  11223333344322 10002357999


Q ss_pred             EEEcCCCC--CCCC--cc---------------cCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~--~~~~--p~---------------~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |+.|+|..  |..+  |.               ..-....|+.. ...+|++||...+
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~ai  353 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAAI  353 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEEE
Confidence            99998732  2111  10               00113457777 5789999996543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PTZ00117 malate dehydrogenase; Provisional

Probab=88.79  E-value=5.8  Score=35.57  Aligned_cols=110  Identities=22%  Similarity=0.293  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~  178 (251)
                      +..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|.. -+    ..-|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence            456899999988 666555554444457999999986654 2211 1111 011122345543 5633 22    34699


Q ss_pred             EEEcCCCCCCCCcc-cCC------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l------~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |+...-.+...+.. ..+      .-.++.+. +.+ ..|++++++-++
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvsN  123 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVTN  123 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEecC
Confidence            99876322210100 000      11355565 444 478997765443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.66  E-value=1.6  Score=37.14  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+|+++|||+ |+ ++..|++ .++.+++.+|-|.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence            457899999984 33 4555555 4678999997664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.64  E-value=4.4  Score=36.26  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+||++|+|+=+ ++..++++ .+..+|+++|.+++-++.+++ +..         . ....+   ...  ...+|+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~---~~~--~~g~d~  225 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD---IPE--DLAVDH  225 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh---hhh--ccCCcE
Confidence            346899999975433 33455553 344689999999988888875 211         0 01111   111  124898


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+ |...    ++    .+...+.. ..+.|+++|++++-.
T Consensus       226 vi-D~~G----~~----~~~~~~~~-~~~~l~~~G~iv~~G  256 (341)
T cd08237         226 AF-ECVG----GR----GSQSAINQ-IIDYIRPQGTIGLMG  256 (341)
T ss_pred             EE-ECCC----CC----ccHHHHHH-HHHhCcCCcEEEEEe
Confidence            87 4331    11    01244566 568999999987643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=88.60  E-value=4  Score=36.12  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      ++.+||+.|+|. |..+.++++..+...+.+++.+++..+.+++. ..      +.-+.....+..+.+..  .++.+|+
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d~  239 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVDC  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence            467899866542 44556667765544788888888888877754 11      11111112233333332  2357998


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |+....     +       .+.++. ..+.|+++|+++.
T Consensus       240 vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~  265 (347)
T cd05278         240 VIEAVG-----F-------EETFEQ-AVKVVRPGGTIAN  265 (347)
T ss_pred             EEEccC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence            884321     1       134555 5678899998874

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.59  E-value=4  Score=35.80  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++.+||+.|+  |.|..+.++++..+ .+|+++..+++-.+.++++ +..      .-+.....|..+.+.. .+..+|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence            34678999984  45556777777765 4799999999988888873 211      0111111233333322 235699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+ |...    +        +.++. ..+.|+++|.++..
T Consensus       214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~  240 (329)
T cd08294         214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC  240 (329)
T ss_pred             EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence            888 4321    1        23455 57789999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=88.51  E-value=3.2  Score=37.33  Aligned_cols=97  Identities=20%  Similarity=0.278  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .+.+||+.|+.+  |.++.++++..+. .+.++--+++-.+.+++.-.       +.-+.....|..+-+++ + ++.+|
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gvD  213 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGVD  213 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCce
Confidence            468999999644  4578888887664 55555555555557776532       12234444555555543 2 34699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|+--.      +       .+.+.. ..+.|+++|.++.-..
T Consensus       214 vv~D~v------G-------~~~~~~-~l~~l~~~G~lv~ig~  242 (326)
T COG0604         214 VVLDTV------G-------GDTFAA-SLAALAPGGRLVSIGA  242 (326)
T ss_pred             EEEECC------C-------HHHHHH-HHHHhccCCEEEEEec
Confidence            998442      1       134444 4678999999987543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.48  E-value=6.9  Score=34.75  Aligned_cols=108  Identities=24%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             CeEEEEecCc-hHH-HHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          104 KTIFIMGGGE-GST-AREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~-G~~-~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++|.+||+|. |.. +..++.. +. .++..+|++++..+....-+.... ......+++..+|..+ +    ...|+||
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVI   73 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVV   73 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEE
Confidence            3799999975 332 3333433 33 489999999887654333221100 0012234555555332 2    4799999


Q ss_pred             EcCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +-...|...+.. ..++  .    +++.+. ++ .-.|+|++++-++
T Consensus        74 itag~~~~~g~~R~dll~~N~~i~~~~~~~-i~-~~~~~~~vivvsN  118 (306)
T cd05291          74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPK-IK-ASGFDGIFLVASN  118 (306)
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HhCCCeEEEEecC
Confidence            976544311110 0111  1    233333 23 3678998776543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=88.36  E-value=7.7  Score=34.75  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=58.6

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..+.||.+||+|. |.....++...+. .++..+|++++..+--..-+.... .+. .++++..+|..++     ...|+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~~-----~~adi   76 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSDC-----KDADL   76 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHHh-----CCCCE
Confidence            4568999999976 5544443333343 479999998876543222121110 111 3466665664332     46899


Q ss_pred             EEEcCCCCCCCCcc-cCCc--cHHHHHHHHc--ccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l~--~~ef~~~~~~--~~L~pgG~l~~~~~  220 (251)
                      |++-+-.|...+.. ..++  ....++.++.  +...|+|++++-++
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            99876443311110 0111  1223333122  23458998876543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.34  E-value=5.1  Score=35.31  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=58.4

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f  176 (251)
                      .++.+||+.|.  |.|..+.++++..+ .+|+++..+++-.+.+++. +..      .-+.... .+..+.++. .++.+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence            45689999984  45667777888765 4799999999888888763 211      0011111 122333332 23569


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|+ |...    +        +.+.. ..++|+++|.++..
T Consensus       209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~  236 (325)
T TIGR02825       209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAIC  236 (325)
T ss_pred             EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEe
Confidence            9988 4321    1        22345 56789999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.28  E-value=1.4  Score=40.50  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=24.6

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID  135 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid  135 (251)
                      ..++||++|+|+ |. ++..|++ .++.+++.+|-|
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~-~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAA-AGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            567899999984 33 3445555 467899999998

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.27  E-value=0.99  Score=36.20  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             HHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHH
Q 025534           93 VHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF  141 (251)
Q Consensus        93 ~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~  141 (251)
                      .+.|+....+.++||++|+|.=+.  ++.|++. + .+|+.|  +|+..+.
T Consensus         3 ~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~-g-a~V~VI--sp~~~~~   49 (157)
T PRK06719          3 NMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT-G-AFVTVV--SPEICKE   49 (157)
T ss_pred             cccceEEEcCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEE--cCccCHH
Confidence            346777777899999999986554  3445553 3 588888  4554443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.21  E-value=2.6  Score=40.37  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=64.7

Q ss_pred             CCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----c-cCCCC-------CCCeEEEEcchH
Q 025534          102 NPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR  166 (251)
Q Consensus       102 ~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~~~~~D~~  166 (251)
                      +.++|-+||+|+=  .++..+++. + -.|+.+|.+++.++.++++...     . .+.+.       ..|++.. .|..
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~a-G-~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~   80 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASA-G-HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH   80 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence            3468999999853  355555654 3 5899999999999876554321     0 00000       0233332 3332


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      + +    ...|+||...++..       -...++|.. +.+.++|+.+++.|+.+
T Consensus        81 ~-l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt  122 (503)
T TIGR02279        81 A-L----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS  122 (503)
T ss_pred             H-h----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence            2 2    36899999877532       123567787 68888888888878754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.14  E-value=14  Score=33.23  Aligned_cols=76  Identities=20%  Similarity=0.368  Sum_probs=42.1

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~  178 (251)
                      +.++|.+||+|. |.....++...+..++..+|++++..+ ++. +... .........++.. +|.. -+    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~~-~l----~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNYE-DI----AGSDV   77 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCHH-Hh----CCCCE
Confidence            447899999987 443333333344457999999998642 111 1000 0001223345654 6743 22    45799


Q ss_pred             EEEcCC
Q 025534          179 IIGDLA  184 (251)
Q Consensus       179 Ii~D~~  184 (251)
                      |+.-.-
T Consensus        78 VI~tag   83 (321)
T PTZ00082         78 VIVTAG   83 (321)
T ss_pred             EEECCC
Confidence            998654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=88.08  E-value=2.4  Score=36.27  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+ |+...+.+.+.++.+++.+|-|.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            457899999973 44444344445788999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02494 adenosylhomocysteinase

Probab=87.90  E-value=6.8  Score=37.18  Aligned_cols=118  Identities=8%  Similarity=0.012  Sum_probs=61.2

Q ss_pred             CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|+++|+|.=+.. ...++..+ .+|+++|.|+.-...+... .          ..+.  +..+.+    +..|+|
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVV  313 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIF  313 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEE
Confidence            35789999999854422 22233345 4899999998654444332 0          1111  233333    357999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH-HHHHhhCCceeeec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKCGYNLT  249 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~-~~l~~~F~~v~~~~  249 (251)
                      +.....       ..+..    .. ..+.+|+||+++ |.+.+...-+...+...- -.-+++.|++.-|.
T Consensus       314 I~tTGt-------~~vI~----~e-~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~  371 (477)
T PLN02494        314 VTTTGN-------KDIIM----VD-HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV  371 (477)
T ss_pred             EECCCC-------ccchH----HH-HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEE
Confidence            873211       12222    23 346799988876 665532122333333221 01134556666554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=87.72  E-value=3.2  Score=36.25  Aligned_cols=88  Identities=25%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             eEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +|.+||+|.  |.++..+.+. + .+|+++|.+++.++.+.+.-.          +.....+. +.+    ...|+|++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence            688999885  4566666654 3 489999999998887765310          11111221 222    457999988


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+...         ..++++. +...++++-++ +..+
T Consensus        65 vp~~~---------~~~~~~~-l~~~l~~~~ii-~d~~   91 (279)
T PRK07417         65 LPIGL---------LLPPSEQ-LIPALPPEAIV-TDVG   91 (279)
T ss_pred             CCHHH---------HHHHHHH-HHHhCCCCcEE-EeCc
Confidence            65211         2356666 56777766444 4443

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=87.63  E-value=1.8  Score=42.63  Aligned_cols=142  Identities=14%  Similarity=0.099  Sum_probs=75.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEE---EEECChHHHHHHHhchhcccCCCCCCCeEEEE--------cch----
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--------NDA----  165 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--------~D~----  165 (251)
                      ..++.+|..|=|+|+++..+++..+..++.   ..|++..+.+-+.-.-+-.=....+.+-+.+.        .|.    
T Consensus       321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~  400 (675)
T PF14314_consen  321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE  400 (675)
T ss_pred             CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence            456889999999999999999976656664   34555444332221111000000011222222        111    


Q ss_pred             -HHHHh----cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       166 -~~~l~----~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                       .+|..    +.+-++|+|++|.--... .. .... .......+...|+++|.+++.+.-.. ..  ..-..++..+..
T Consensus       401 TW~YF~~l~~~~~~~idLiv~DmEV~d~-~~-~~kI-e~~l~~~~~~ll~~~gtLIfKTYlt~-l~--~~~~~il~~lg~  474 (675)
T PF14314_consen  401 TWKYFVSLKKQHNLSIDLIVMDMEVRDD-SI-IRKI-EDNLRDYVHSLLEEPGTLIFKTYLTR-LL--SPDYNILDLLGR  474 (675)
T ss_pred             HHHHHHHHHhhcCCcccEEEEeceecCh-HH-HHHH-HHHHHHHHHHhcCCCcEEEEehhHhh-hh--cchhhHHHHHHh
Confidence             12222    235689999999742110 00 0011 12222224578899999998763211 11  112368889999


Q ss_pred             hCCceeee
Q 025534          241 VFKCGYNL  248 (251)
Q Consensus       241 ~F~~v~~~  248 (251)
                      .|+.|..+
T Consensus       475 ~F~~V~l~  482 (675)
T PF14314_consen  475 YFKSVELV  482 (675)
T ss_pred             hcCceEEE
Confidence            99988754

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=87.62  E-value=3.9  Score=36.45  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      .++.+||+.|+|+=+ .+.++++..+...|++++.+++-.+.+++. ...      .-+.....+..+..+. .+..+|.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~~~d~  231 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM------QTFNSREMSAPQIQSVLRELRFDQ  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------eEecCcccCHHHHHHHhcCCCCCe
Confidence            346899999864322 345556665655589999999988888763 211      0011111121222222 2346886


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++|...    .       ...+.. ..+.|+++|.+++-.
T Consensus       232 ~v~d~~G----~-------~~~~~~-~~~~l~~~G~iv~~G  260 (347)
T PRK10309        232 LILETAG----V-------PQTVEL-AIEIAGPRAQLALVG  260 (347)
T ss_pred             EEEECCC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence            6667542    1       134455 467899999988653

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.51  E-value=7.2  Score=35.28  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      ....+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++.
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~  229 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL  229 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence            3468999998753 23455667766655799999999999988764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=87.37  E-value=5.4  Score=35.46  Aligned_cols=98  Identities=23%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc----hHHHHhc-CCC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELES-RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D----~~~~l~~-~~~  174 (251)
                      .++.+||+.|+|+ |..+.++++..+...|+++..+++-.+.+++. +..      .-+.....+    ..+..+. .++
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~  233 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence            4568999987654 44566777766644489999888888877663 211      001111112    1111111 235


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+|+|+-....            ...... ..+.|+++|.++..
T Consensus       234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~  264 (343)
T cd05285         234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV  264 (343)
T ss_pred             CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence            69999864321            124455 56789999988754

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=87.07  E-value=6.6  Score=33.19  Aligned_cols=49  Identities=14%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             hhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus        97 ~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      .+....|-+.|+.|.|-..+.-..+.+.  .+...+|=|+..+..+++..+
T Consensus        34 VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p   82 (225)
T TIGR01627        34 VLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP   82 (225)
T ss_pred             HHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence            3345578999999999999988888874  467899999999999887654

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=87.04  E-value=2.8  Score=32.59  Aligned_cols=30  Identities=33%  Similarity=0.588  Sum_probs=21.6

Q ss_pred             eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDID  135 (251)
Q Consensus       105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid  135 (251)
                      +||++|||+ |. ++..|++ .+..+++.+|-|
T Consensus         1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence            589999973 33 3455555 467899999987

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.97  E-value=4.1  Score=37.89  Aligned_cols=72  Identities=24%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCce
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~f  176 (251)
                      ..++++++|+|.=+  ++..|.+. + ..|+++|.|++.++..++.+         +.+.++.+|+.+  .+... -+++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~-~-~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKE-G-YSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence            46889999996543  23333332 3 58999999999988776532         246788888843  33322 3679


Q ss_pred             eEEEEcCC
Q 025534          177 DVIIGDLA  184 (251)
Q Consensus       177 D~Ii~D~~  184 (251)
                      |.|++-..
T Consensus       299 ~~vi~~~~  306 (453)
T PRK09496        299 DAFIALTN  306 (453)
T ss_pred             CEEEECCC
Confidence            99887654

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=86.88  E-value=3.2  Score=37.36  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=48.8

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----cC-CCceeEEE
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----SR-KESYDVII  180 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-----~~-~~~fD~Ii  180 (251)
                      +|||.|.-.+--.+-.....-..++.|+|..-++.|+++.+.++   ...++++++.....-+-     .. +..||..+
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~---lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM  183 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN---LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM  183 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc---cccceeeEEecchhhcchhhhccCccceeeEEe
Confidence            56776654432222222122468899999999999999988664   34677777765433321     11 34699999


Q ss_pred             EcCC
Q 025534          181 GDLA  184 (251)
Q Consensus       181 ~D~~  184 (251)
                      +++|
T Consensus       184 cNPP  187 (419)
T KOG2912|consen  184 CNPP  187 (419)
T ss_pred             cCCc
Confidence            9997

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.63  E-value=1.9  Score=39.74  Aligned_cols=43  Identities=5%  Similarity=0.079  Sum_probs=34.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .+..+||-|.+|+..+..++++.|  ++|++||+||....+.+-.
T Consensus        34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLK   76 (380)
T PF11899_consen   34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELK   76 (380)
T ss_pred             CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHH
Confidence            345689999998877777777653  6999999999998887643

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=86.53  E-value=6.9  Score=34.73  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f  176 (251)
                      .++.+||+.|+  |-|..+.++++..+ .+|+++..+++-.+.+++.++..      .-+.... .|..+.+.. .+..+
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv  222 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI  222 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence            35689999996  45556777788766 47888898888888887633321      1111111 133333332 23579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|+ |...    +        ..+.. ..+.|+++|.++..
T Consensus       223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~  250 (338)
T cd08295         223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC  250 (338)
T ss_pred             EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence            9888 4321    1        23455 46789999998854

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK10637 cysG siroheme synthase; Provisional

Probab=86.48  E-value=1.6  Score=41.16  Aligned_cols=75  Identities=13%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             HhHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534           94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (251)
Q Consensus        94 ~~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l  169 (251)
                      +.|+....+.++||++|+|.=+.-  ..+++. + ++|++|  |+++++-+++.+           .+++++..+...- 
T Consensus         3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~-g-a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~~-   68 (457)
T PRK10637          3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDA-G-ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDES-   68 (457)
T ss_pred             eeceEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCChH-
Confidence            356666678899999999876654  334443 3 577777  777777655442           3566665443221 


Q ss_pred             hcCCCceeEEEEcCC
Q 025534          170 ESRKESYDVIIGDLA  184 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~  184 (251)
                        .-+.+++|+....
T Consensus        69 --dl~~~~lv~~at~   81 (457)
T PRK10637         69 --LLDTCWLAIAATD   81 (457)
T ss_pred             --HhCCCEEEEECCC
Confidence              1135677776543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.38  E-value=3.3  Score=40.66  Aligned_cols=70  Identities=24%  Similarity=0.354  Sum_probs=49.4

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-Ccee
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD  177 (251)
                      ..+|+++|+|.=+  +++.+.+. + .+++++|.|++.++.+++.           ..+++.+|+.+.  +++.+ ++.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS-G-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence            3689999997654  23444433 3 4799999999999988763           357899998654  44333 6889


Q ss_pred             EEEEcCCC
Q 025534          178 VIIGDLAD  185 (251)
Q Consensus       178 ~Ii~D~~~  185 (251)
                      ++++-..+
T Consensus       467 ~vvv~~~d  474 (621)
T PRK03562        467 VLINAIDD  474 (621)
T ss_pred             EEEEEeCC
Confidence            88887654

>PRK07904 short chain dehydrogenase; Provisional

Probab=86.27  E-value=5.9  Score=33.78  Aligned_cols=79  Identities=19%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHH-HHHHHhchhcccCCCCCCCeEEEEcchHH------HHh
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~  170 (251)
                      ..+++||+.|+.+|.   ++++++++. ..+|+.++.+++- ++...+.+...    ...+++++..|..+      .++
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~   80 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID   80 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence            467889999996554   334444442 3589999888763 44333333221    12367887777532      121


Q ss_pred             c--CCCceeEEEEcCC
Q 025534          171 S--RKESYDVIIGDLA  184 (251)
Q Consensus       171 ~--~~~~fD~Ii~D~~  184 (251)
                      .  ..+..|+++.+..
T Consensus        81 ~~~~~g~id~li~~ag   96 (253)
T PRK07904         81 AAFAGGDVDVAIVAFG   96 (253)
T ss_pred             HHHhcCCCCEEEEeee
Confidence            1  1257999887653

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.19  E-value=1.7  Score=36.29  Aligned_cols=39  Identities=23%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHH
Q 025534          100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVE  140 (251)
Q Consensus       100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~  140 (251)
                      .+.+++||++|.- +|....+++..  ..+|+++|++|.+-.
T Consensus        42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~   81 (254)
T COG4017          42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRG   81 (254)
T ss_pred             ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHh
Confidence            4678999999984 66667777764  369999999997733

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=85.86  E-value=5.1  Score=33.71  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-----------H
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-----------A  167 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-----------~  167 (251)
                      +.++||+.|+.+|.   +++.+++. + .+|.+++.++.-.+...+.+...    ...++.++..|..           +
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~   84 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARH-G-ATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLAD   84 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHH
Confidence            56789999975443   33444443 3 48999999987665444433211    1235666665552           1


Q ss_pred             HHhcCCCceeEEEEcCC
Q 025534          168 ELESRKESYDVIIGDLA  184 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~  184 (251)
                      .+.+...+.|.||..+.
T Consensus        85 ~~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         85 TIEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHHhCCCCEEEECCc
Confidence            22222357999999874

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=85.83  E-value=2.8  Score=37.22  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             CeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhc--hhcccCCCCCCCeE--EEEcchHHHHhcCCCcee
Q 025534          104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLE--LVINDARAELESRKESYD  177 (251)
Q Consensus       104 ~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--~~~~~~~~~~~rv~--~~~~D~~~~l~~~~~~fD  177 (251)
                      .||+++|+|. |+ ++..|.+. + ..|+.++-.++-++..++.  +....   ......  +...+     ....+.||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~-G-~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA-G-LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-C-CCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence            4799999884 33 45555553 3 4799999987666666542  22111   001111  11111     11235799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +|++-.-.         ..+.+.++. ++.++.++..++.
T Consensus        73 ~viv~vK~---------~~~~~al~~-l~~~l~~~t~vv~  102 (305)
T PRK05708         73 RLLLACKA---------YDAEPAVAS-LAHRLAPGAELLL  102 (305)
T ss_pred             EEEEECCH---------HhHHHHHHH-HHhhCCCCCEEEE
Confidence            99987421         224577777 7888999886543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=85.81  E-value=25  Score=31.25  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             cCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534           99 HHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      ..++.+++++||+|.=+-.  ..+....+..+|..++.+++-.+...+.+...       .+.+...|..+.+    ...
T Consensus       121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~a  189 (304)
T PRK07340        121 APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP----EAV  189 (304)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcC
Confidence            3456789999999755432  23323345678999999987766544443311       1233356665555    479


Q ss_pred             eEEEEcCCC
Q 025534          177 DVIIGDLAD  185 (251)
Q Consensus       177 D~Ii~D~~~  185 (251)
                      |+|+.-.+.
T Consensus       190 DiVitaT~s  198 (304)
T PRK07340        190 DLVVTATTS  198 (304)
T ss_pred             CEEEEccCC
Confidence            999987653

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.72  E-value=1.5  Score=39.88  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc----C----CCcEEEEEECChHHHHHHHhchh
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      .|.+-++++||.|.|.++.-+++.    .    ...++..||+||+..+.=++.+.
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~  130 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK  130 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence            456788999999999988777652    1    35689999999999887776654

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.67  E-value=12  Score=33.09  Aligned_cols=108  Identities=25%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHH-hchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeEEE
Q 025534          104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCK-SYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+|-+||+|. |......+...+..+|..+|++++..+... .......  ......++.. +|..+ +    ..-|+|+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~--~~~~~~~i~~~~d~~~-~----~~aDiVi   75 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP--VEGFDTKITGTNDYED-I----AGSDVVV   75 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh--hcCCCcEEEeCCCHHH-H----CCCCEEE
Confidence            5899999988 655444443333228999999988754221 1111100  0111234442 45322 2    3579999


Q ss_pred             EcCCCCCCCCcc-cCC------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~-~~l------~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +....|...+.. ..+      .-.++++. +.+. .|++++++.++
T Consensus        76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN  120 (307)
T PRK06223         76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN  120 (307)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence            876433311110 000      11345555 4444 47887776554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.59  E-value=9.4  Score=33.83  Aligned_cols=66  Identities=12%  Similarity=0.211  Sum_probs=40.1

Q ss_pred             CCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD~I  179 (251)
                      .+++|++||.|.-+.+ ...++..+ .+|++++.+++..+.+++. .          .+.+ ..+..+.+    ..+|+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV  214 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII  214 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence            5789999999764432 22333345 5999999998876666542 1          1111 12333333    469999


Q ss_pred             EEcC
Q 025534          180 IGDL  183 (251)
Q Consensus       180 i~D~  183 (251)
                      |.-.
T Consensus       215 I~t~  218 (296)
T PRK08306        215 FNTI  218 (296)
T ss_pred             EECC
Confidence            9864

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.50  E-value=7.8  Score=31.35  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..+++++++|-|.=+  ++..+... + ++|+++|+||.  ...+.+..         ..++.  +..+.+    ...|+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~-G-a~V~V~e~DPi--~alqA~~d---------Gf~v~--~~~~a~----~~adi   81 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGL-G-ARVTVTEIDPI--RALQAAMD---------GFEVM--TLEEAL----RDADI   81 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHT-T--EEEEE-SSHH--HHHHHHHT---------T-EEE---HHHHT----TT-SE
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhC-C-CEEEEEECChH--HHHHhhhc---------CcEec--CHHHHH----hhCCE
Confidence            467899999998654  34444443 4 69999999994  33333321         22332  222322    46898


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |+...      +. ....+.+.|+.     || +|.++.|.++.
T Consensus        82 ~vtaT------G~-~~vi~~e~~~~-----mk-dgail~n~Gh~  112 (162)
T PF00670_consen   82 FVTAT------GN-KDVITGEHFRQ-----MK-DGAILANAGHF  112 (162)
T ss_dssp             EEE-S------SS-SSSB-HHHHHH-----S--TTEEEEESSSS
T ss_pred             EEECC------CC-ccccCHHHHHH-----hc-CCeEEeccCcC
Confidence            88753      22 23445666665     44 46666788764

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=85.46  E-value=11  Score=33.90  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=55.1

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f  176 (251)
                      .++.+||++|+|.=+ .+..+++..+..+|++++.+++-.+.++++ ...      .-+....  .+..+.+.. ....+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~~~~~~~~~~g~  255 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT------DFINPKDSDKPVSEVIREMTGGGV  255 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------cEeccccccchHHHHHHHHhCCCC
Confidence            356899999764222 345566666655899999999988888763 210      0011111  112222321 23569


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+|+--..     .       ...+.. ..+.|+++ |.++.-.
T Consensus       256 d~vid~~g-----~-------~~~~~~-~~~~l~~~~G~~v~~g  286 (365)
T cd08277         256 DYSFECTG-----N-------ADLMNE-ALESTKLGWGVSVVVG  286 (365)
T ss_pred             CEEEECCC-----C-------hHHHHH-HHHhcccCCCEEEEEc
Confidence            98884321     1       123444 45678775 8887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=85.22  E-value=16  Score=32.47  Aligned_cols=105  Identities=20%  Similarity=0.287  Sum_probs=55.2

Q ss_pred             eEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHH-HHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +|.+||+|. |.. +..++......++..+|++++..+- +.......  .+. +...+..+|..+ +    ...|+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence            689999986 333 3334443323589999999876652 22211110  111 224555555322 2    46899999


Q ss_pred             cCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -+..+...+.. ..+.  +    +++.+. +. ...|+|++++-+
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~-l~-~~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQ-IL-KYAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HHCCCeEEEEec
Confidence            87655421110 0011  1    233444 23 366889888754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=85.06  E-value=12  Score=33.85  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc--chHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~--D~~~~l~~-~~~~f  176 (251)
                      .++.+||++|+|.= ..+.++++..+..+|++++.+++-.+.+++. ...      .-+.....  |..+.+.+ ++..+
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~  257 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT------DCVNPKDHDKPIQQVLVEMTDGGV  257 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------EEEcccccchHHHHHHHHHhCCCC
Confidence            45689999986422 2345566665644799999999998888763 211      00111111  23333332 23479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+|+--..     .+       ..+.. ..+.|+++ |.++.-.
T Consensus       258 d~vid~~g-----~~-------~~~~~-a~~~l~~~~G~~v~~g  288 (368)
T cd08300         258 DYTFECIG-----NV-------KVMRA-ALEACHKGWGTSVIIG  288 (368)
T ss_pred             cEEEECCC-----Ch-------HHHHH-HHHhhccCCCeEEEEc
Confidence            98885321     11       23444 45678886 8877543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK07102 short chain dehydrogenase; Provisional

Probab=84.99  E-value=4.4  Score=33.97  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=44.8

Q ss_pred             CeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------HhcCCC
Q 025534          104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESRKE  174 (251)
Q Consensus       104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~~~~  174 (251)
                      ++|++.|+.+|.   +++.+++. + .+|++++.+++-.+...+.....    ...+++++..|..+.      +....+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~   75 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAA-G-ARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLPA   75 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHhh
Confidence            579999975443   33444443 3 58999999887554333322211    135788888876543      222234


Q ss_pred             ceeEEEEcCC
Q 025534          175 SYDVIIGDLA  184 (251)
Q Consensus       175 ~fD~Ii~D~~  184 (251)
                      ++|.++.++.
T Consensus        76 ~~d~vv~~ag   85 (243)
T PRK07102         76 LPDIVLIAVG   85 (243)
T ss_pred             cCCEEEECCc
Confidence            6899998764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=84.95  E-value=6.3  Score=38.59  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~  178 (251)
                      .+|+++|+|.=+  +++.+.++ + .+++++|.||+.++.++++           ..+++.+|+.+.  +++.+ ++.|.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~  467 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMAN-K-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA  467 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence            579999987544  23444433 3 4899999999999988763           357888998653  44333 68998


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++-..++..        +......  .+.+.|+..+++..
T Consensus       468 vv~~~~d~~~--------n~~i~~~--~r~~~p~~~IiaRa  498 (601)
T PRK03659        468 IVITCNEPED--------TMKIVEL--CQQHFPHLHILARA  498 (601)
T ss_pred             EEEEeCCHHH--------HHHHHHH--HHHHCCCCeEEEEe
Confidence            8887654321        1122232  34577777777654

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=84.75  E-value=8.9  Score=34.57  Aligned_cols=97  Identities=18%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      ...+||+.|+|+ |..+..+++..+...+++++.+++-.+.+++. ...      .-+.....+..+.+.. .+..+|+|
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~v  258 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDYA  258 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcEE
Confidence            467899997643 33455666666655799999999888877763 110      0001001122222221 24569998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +-....     +       ..+.. +.+.|+++|.++..
T Consensus       259 ld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~  284 (365)
T cd08278         259 LDTTGV-----P-------AVIEQ-AVDALAPRGTLALV  284 (365)
T ss_pred             EECCCC-----c-------HHHHH-HHHHhccCCEEEEe
Confidence            854321     1       23444 46778889988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=84.66  E-value=6.9  Score=30.43  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=42.4

Q ss_pred             CCCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++++|+++|+|.=  .++..+.+. +..+|++++.+++-.+...+.+...       .+.....|..+.    -+..|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv   84 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL   84 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence            45689999998631  233344443 2468999999987665544332210       011222333222    257999


Q ss_pred             EEEcCCCC
Q 025534          179 IIGDLADP  186 (251)
Q Consensus       179 Ii~D~~~~  186 (251)
                      |++..+.+
T Consensus        85 vi~~~~~~   92 (155)
T cd01065          85 IINTTPVG   92 (155)
T ss_pred             EEeCcCCC
Confidence            99987653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02256 arogenate dehydrogenase

Probab=84.57  E-value=9.8  Score=33.90  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ....+|.+||+|.  |.++..+.+. + .+|++++.++. .+.++++           .+.. ..|..+.+.   ...|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv   95 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV   95 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence            3567899999874  4455555543 3 47999999874 2334331           1221 344444432   35799


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~~  220 (251)
                      |++..+..         ...++++. + ...++++. +++..+
T Consensus        96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~  127 (304)
T PLN02256         96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVL  127 (304)
T ss_pred             EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecC
Confidence            99875421         13455666 4 45567765 444543

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.44  E-value=7.3  Score=33.87  Aligned_cols=88  Identities=19%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             eEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +|.+||+|.  +.++..+.+.....+|+++|.+++..+.+++. +.         +.. ..+..+ +   .+ .|+||+-
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~---------~~~-~~~~~~-~---~~-aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GL---------VDE-IVSFEE-L---KK-CDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CC---------Ccc-cCCHHH-H---hc-CCEEEEe
Confidence            688999886  34556665542224799999999887776542 11         000 123222 2   12 7999988


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+...         ..+.+.. +.. ++++.+++ ..+
T Consensus        66 vp~~~---------~~~~~~~-l~~-l~~~~iv~-d~g   91 (275)
T PRK08507         66 IPVDA---------IIEILPK-LLD-IKENTTII-DLG   91 (275)
T ss_pred             CcHHH---------HHHHHHH-Hhc-cCCCCEEE-ECc
Confidence            65321         2456666 566 77766544 443

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=84.43  E-value=9.9  Score=33.69  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (251)
Q Consensus       104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (251)
                      .+|.+||+|.=  .++..++++ + .+|+++|.+++.++.+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~v~d~~~~~~~~~~~   43 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARA-G-HEVRLWDADPAAAAAAPA   43 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHC-C-CeeEEEeCCHHHHHHHHH
Confidence            47999998843  355666664 3 489999999988887654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=84.19  E-value=5.4  Score=36.64  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECC
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid  135 (251)
                      ...+||++|+|+-+  ++..|++ .++.+++.+|-|
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~-~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence            56789999998533  3455555 467899999988

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=84.14  E-value=15  Score=32.75  Aligned_cols=111  Identities=17%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             eEEEEecCc-hHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCC-CCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +|-+||+|. |... ..++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+.     ..-|+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~~-----~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDDC-----ADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHHh-----CCCCEEEE
Confidence            578999976 5544 44444433458999999866543222111110 11122 3577777773332     46899998


Q ss_pred             cCCCCCCCCcc---cCCc--cHHHHHHHHc--ccCCCCcEEEEecCC
Q 025534          182 DLADPIEGGPC---YKLY--TKSFYEFVVK--PRLNPEGIFVTQAGP  221 (251)
Q Consensus       182 D~~~~~~~~p~---~~l~--~~ef~~~~~~--~~L~pgG~l~~~~~~  221 (251)
                      -+-.+...+..   ..|+  ..+.++.++.  ..-.|+|++++-++|
T Consensus        75 taG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP  121 (307)
T cd05290          75 TAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP  121 (307)
T ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            76443311111   1111  1233333111  234588988875543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06949 short chain dehydrogenase; Provisional

Probab=84.03  E-value=9  Score=32.23  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=46.2

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~--  170 (251)
                      ..++||+.|+++|.   +++.+++. + .+|+++..+++-++...+.+...     ..+++++..|..+      .+.  
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQA-G-AKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHA   80 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            46889999965443   23344443 3 48999999988776555543321     2357777777532      121  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +..++.|+|+....
T Consensus        81 ~~~~~~~d~li~~ag   95 (258)
T PRK06949         81 ETEAGTIDILVNNSG   95 (258)
T ss_pred             HHhcCCCCEEEECCC
Confidence             12246899999875

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=83.94  E-value=17  Score=33.35  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhc-C-CC
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-R-KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~-~-~~  174 (251)
                      ....+||+.|+|.=+ .+..+++..+...|.++|.+++-.+.+++. ..        . .+..   .+..+.+.. . ..
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~  253 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP  253 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence            346789997664322 344566666655677789999888888874 21        1 1111   133333322 2 34


Q ss_pred             ceeEEEEcCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          175 SYDVIIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+|+|+--.-.+....+.  ..-.....+++ ..+.++++|.+++-.
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIPG  299 (393)
T ss_pred             CCcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEee
Confidence            699888543322100000  00011135666 468999999998643

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK06194 hypothetical protein; Provisional

Probab=83.92  E-value=7.2  Score=33.58  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=45.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--H----h--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l----~--  170 (251)
                      ..++||+.|+++|.   +++.+++. + .+|+.++.+++..+...+.+..     ...++.++..|..+.  +    .  
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~   77 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAAL-G-MKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAA   77 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHC-C-CEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHH
Confidence            35789999876543   34444443 3 5899999987665544333221     124677788886532  1    1  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +..++.|+|+.++.
T Consensus        78 ~~~~g~id~vi~~Ag   92 (287)
T PRK06194         78 LERFGAVHLLFNNAG   92 (287)
T ss_pred             HHHcCCCCEEEECCC
Confidence             11246899999875

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=83.86  E-value=2.6  Score=36.55  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .+.+||++|+|+|..+..++.+.. .+|..-|+-. +++..+.+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~-~~~~L~~~  127 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPK-VVENLKFN  127 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc-ceeccCCchh-hHHHHHHh
Confidence            467899999999988777777543 5777777644 44444433

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.81  E-value=4.4  Score=40.48  Aligned_cols=103  Identities=16%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHH
Q 025534          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~  168 (251)
                      ++|.+||+|+=  +++..++...+ -.|+.+|.+++.++.+++++...      ...+.       -.++++. .|. +-
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~  386 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG  386 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH
Confidence            78999999873  34555553334 58999999999998877654211      00000       0234333 221 21


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +    ...|+||-..++..       -..+++|++ +.+.++|+.+|+.|+.+
T Consensus       387 ~----~~aDlViEav~E~~-------~~K~~v~~~-le~~~~~~~ilasnTS~  427 (708)
T PRK11154        387 F----KHADVVIEAVFEDL-------ALKQQMVAE-VEQNCAPHTIFASNTSS  427 (708)
T ss_pred             h----ccCCEEeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            2    46888887765321       124688999 79999999999988753

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=83.78  E-value=11  Score=35.80  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|+++|+|.=+ .....++..+ .+|+++|.||.-...+...           .+++.  +..+.+    +..|+|
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~~--~leell----~~ADIV  313 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQVV--TLEDVV----ETADIF  313 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Cceec--cHHHHH----hcCCEE
Confidence            367999999998622 1222223344 4899999998765333321           12221  233333    468999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++...     .  .++.+.+.     .+.+|||++++ |.+.
T Consensus       314 I~atG-----t--~~iI~~e~-----~~~MKpGAiLI-NvGr  342 (476)
T PTZ00075        314 VTATG-----N--KDIITLEH-----MRRMKNNAIVG-NIGH  342 (476)
T ss_pred             EECCC-----c--ccccCHHH-----HhccCCCcEEE-EcCC
Confidence            98632     1  23444443     35588888776 7654

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=83.76  E-value=4  Score=36.23  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             eEEEEecCch-H-HHHHHHhcCCCcEEEEEECChH
Q 025534          105 TIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus       105 ~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~~  137 (251)
                      |||++|+|+= . ++..|+. .+..+++.+|.|.-
T Consensus         1 kVlVVGaGGlG~eilknLal-~Gvg~I~IvD~D~V   34 (291)
T cd01488           1 KILVIGAGGLGCELLKNLAL-SGFRNIHVIDMDTI   34 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEe
Confidence            6999999732 2 3344444 57889999998754

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=83.72  E-value=5.2  Score=29.40  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+.++||++|+|.-+..+.-.-....++|+.+..+.   +.++            .++++...+..+.    -..+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~----l~~~~lV   64 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED----LDGADLV   64 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG----CTTESEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH----HhhheEE
Confidence            3467899999998766644322222237999998876   2222            2445554443222    2569999


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      +....
T Consensus        65 ~~at~   69 (103)
T PF13241_consen   65 FAATD   69 (103)
T ss_dssp             EE-SS
T ss_pred             EecCC
Confidence            97654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=83.69  E-value=7.2  Score=34.13  Aligned_cols=93  Identities=15%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeEE---EEcchHHHHhcCCCceeE
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV  178 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~---~~~D~~~~l~~~~~~fD~  178 (251)
                      +|+++|+|.-+.  +..+.+. + .+|+.++. ++.++..++. +....   ......+   ...|..    ...+.+|+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~----~~~~~~d~   71 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDPE----ELTGPFDL   71 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCHH----HccCCCCE
Confidence            699999987654  4445543 3 47999998 6666665543 22111   0011111   112211    11267999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |++-...+         ...+.++. ++..+.++.+++.
T Consensus        72 vilavk~~---------~~~~~~~~-l~~~~~~~~~ii~  100 (305)
T PRK12921         72 VILAVKAY---------QLDAAIPD-LKPLVGEDTVIIP  100 (305)
T ss_pred             EEEEeccc---------CHHHHHHH-HHhhcCCCCEEEE
Confidence            99876432         13466677 6777877765553

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=83.66  E-value=12  Score=34.83  Aligned_cols=106  Identities=19%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH----H-----Hhc-C-
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----E-----LES-R-  172 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~----~-----l~~-~-  172 (251)
                      .+|-++|.|==++...+.-.....+|+++|||+..++...+--           ..+..-|..+    .     ++. + 
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd   78 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD   78 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence            6888999986666544433222368999999999999876521           1111111111    1     111 1 


Q ss_pred             C---CceeEEEEcCCCCCCC--CcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          173 K---ESYDVIIGDLADPIEG--GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       173 ~---~~fD~Ii~D~~~~~~~--~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      .   ...|++++..|-|...  .| .--+-....+. +.+.|++|-.+++.+..|
T Consensus        79 ~~~l~~~dv~iI~VPTPl~~~~~p-Dls~v~~aa~s-Ia~~L~kG~LVIlEST~~  131 (436)
T COG0677          79 PEELKECDVFIICVPTPLKKYREP-DLSYVESAARS-IAPVLKKGDLVILESTTP  131 (436)
T ss_pred             hhhcccCCEEEEEecCCcCCCCCC-ChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence            1   2688888877655432  23 12223455666 689999999999987544

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=83.60  E-value=10  Score=33.24  Aligned_cols=94  Identities=20%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc---chHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~---D~~~~l~~~~~~fD  177 (251)
                      ++.+||++|+|. |..+.++++..+...|.+++.+++..+.++++ ...         .++..   +.........+.+|
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~~~vd  228 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GAT---------ETVDPSREDPEAQKEDNPYGFD  228 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCe---------EEecCCCCCHHHHHHhcCCCCc
Confidence            457999997542 34555666655544489999999988887653 110         11111   11111111246799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+.....            .+.... ..+.|+++|.++.-
T Consensus       229 ~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~  256 (334)
T cd08234         229 VVIEATGV------------PKTLEQ-AIEYARRGGTVLVF  256 (334)
T ss_pred             EEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence            99854221            134455 46788999988753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=83.52  E-value=3.3  Score=38.82  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             CCCeEEEEecCchHHHHHHHh---cCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~---~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+  ++.++++   .+++.++|.||-+.
T Consensus        19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~   54 (425)
T cd01493          19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK   54 (425)
T ss_pred             hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence            457899999863  5555555   36888999999774

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=83.47  E-value=3.2  Score=37.62  Aligned_cols=99  Identities=15%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~  178 (251)
                      .++.+|.++|||+=++ +..-++..+..+|.+||+++.-.++|+++=...-   -+++-.   +|..+.+... +.--|.
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~---~~vv~~i~~~T~gG~d~  257 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF---VNPKEV---DDVVEAIVELTDGGADY  257 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee---ecchhh---hhHHHHHHHhcCCCCCE
Confidence            3567899999976444 4444555677899999999999999999732210   011100   0566666543 335666


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .|-- .     +      ..+.+++ ..+.+..+|..++-
T Consensus       258 ~~e~-~-----G------~~~~~~~-al~~~~~~G~~v~i  284 (366)
T COG1062         258 AFEC-V-----G------NVEVMRQ-ALEATHRGGTSVII  284 (366)
T ss_pred             EEEc-c-----C------CHHHHHH-HHHHHhcCCeEEEE
Confidence            6432 1     1      1245565 45666668876654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=83.42  E-value=6.7  Score=30.57  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             CeEEEEecCchH---HHHHHHhcCCCcEEEEEECC--hHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534          104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (251)
Q Consensus       104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~--  170 (251)
                      |.||+.|+++|.   +++.++++ +..+|..+.-+  .+-.+...+.++.     ...++.++..|..+      .++  
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~   74 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEEV   74 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccc-----ccccccccccccccccccccccccc
Confidence            468899987664   45555665 45688888888  3333333332331     13678888877432      222  


Q ss_pred             -cCCCceeEEEEcCCC
Q 025534          171 -SRKESYDVIIGDLAD  185 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~~  185 (251)
                       ....+.|++|.++..
T Consensus        75 ~~~~~~ld~li~~ag~   90 (167)
T PF00106_consen   75 IKRFGPLDILINNAGI   90 (167)
T ss_dssp             HHHHSSESEEEEECSC
T ss_pred             cccccccccccccccc
Confidence             224689999998753

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=83.40  E-value=2.6  Score=40.04  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .-++|+|+..|.|+++..|...+ +   .+.-.-|.   .....++.   .++..=+= +.-|-.+-+.+-+.+||+|=.
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~-V---WVMNVVP~---~~~ntL~v---IydRGLIG-~yhDWCE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP-V---WVMNVVPV---SGPNTLPV---IYDRGLIG-VYHDWCEAFSTYPRTYDLLHA  433 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC-c---eEEEeccc---CCCCcchh---hhhcccch-hccchhhccCCCCcchhheeh
Confidence            45889999999999999987753 2   22222121   01111110   01111111 112333434445689999987


Q ss_pred             cCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.. +... ..   -.-...+-+ +-|+|+|+|.+++..
T Consensus       434 ~~lfs~~~-~r---C~~~~illE-mDRILRP~G~~iiRD  467 (506)
T PF03141_consen  434 DGLFSLYK-DR---CEMEDILLE-MDRILRPGGWVIIRD  467 (506)
T ss_pred             hhhhhhhc-cc---ccHHHHHHH-hHhhcCCCceEEEec
Confidence            743 2221 11   112455666 799999999999864

; GO: 0008168 methyltransferase activity

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=83.23  E-value=15  Score=32.13  Aligned_cols=94  Identities=18%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ....+||+.|+| -|..+..+++..+ .+|+++..+++..+.+++. ...         .++..+-........+.+|++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~d~v  229 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GAD---------EVVDSGAELDEQAAAGGADVI  229 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CCc---------EEeccCCcchHHhccCCCCEE
Confidence            345789999876 4445555666555 4799999999988887653 210         111110001111122468988


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +.-...            ...... +.+.|+++|.++.-
T Consensus       230 i~~~~~------------~~~~~~-~~~~l~~~G~~i~~  255 (330)
T cd08245         230 LVTVVS------------GAAAEA-ALGGLRRGGRIVLV  255 (330)
T ss_pred             EECCCc------------HHHHHH-HHHhcccCCEEEEE
Confidence            743221            123455 56789999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=83.09  E-value=9.3  Score=33.74  Aligned_cols=97  Identities=22%  Similarity=0.339  Sum_probs=57.7

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      ....+||+.|+|. |..+..+++..+ .+|+++..+++..+.++++ ...      .-+.....+..+.+.+  .++.+|
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~-g~~------~v~~~~~~~~~~~l~~~~~~~~vd  229 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFAREL-GAD------DTINVGDEDVAARLRELTDGEGAD  229 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHh-CCC------EEecCcccCHHHHHHHHhCCCCCC
Confidence            3567999998653 456667777655 5788998888888887653 211      1111112232233322  234699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+....     +       .+.+.. +.+.|+++|.++..
T Consensus       230 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~i~~  257 (337)
T cd08261         230 VVIDATG-----N-------PASMEE-AVELVAHGGRVVLV  257 (337)
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            9986531     1       133455 56788899988753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.96  E-value=6.1  Score=38.16  Aligned_cols=93  Identities=12%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~  178 (251)
                      .+++++|+|.=+  +++.+.++ + .+++++|.|++.++.+++.           ..+++++|+.+.  +++.+ ++.|.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~-g-~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~  484 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAA-G-IPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW  484 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence            678999997544  33444333 3 4799999999999888752           367888998763  33322 68998


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++...+...        .......  .+.+.|+-.++...
T Consensus       485 viv~~~~~~~--------~~~iv~~--~~~~~~~~~iiar~  515 (558)
T PRK10669        485 LLLTIPNGYE--------AGEIVAS--AREKRPDIEIIARA  515 (558)
T ss_pred             EEEEcCChHH--------HHHHHHH--HHHHCCCCeEEEEE
Confidence            8876554220        1122222  34456777777654

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=82.93  E-value=16  Score=26.86  Aligned_cols=110  Identities=19%  Similarity=0.154  Sum_probs=68.2

Q ss_pred             eEEEEecCchHHHH--HHHhcCCCcEE-EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGEGSTAR--EILRHKTVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~G~~~~--~l~~~~~~~~v-~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ||.+||+|..+...  .+.+..+..++ -.+|.+++-.+.+.+.+.          +. ...|..+.+..  ...|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence            68999998775432  33444233454 478999988776654432          23 66778888764  47999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ..+...            .++. +.+.|+-|--+++.-  |- ..+.+..+++.+..++.-.
T Consensus        69 ~tp~~~------------h~~~-~~~~l~~g~~v~~EK--P~-~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   69 ATPPSS------------HAEI-AKKALEAGKHVLVEK--PL-ALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             ESSGGG------------HHHH-HHHHHHTTSEEEEES--SS-SSSHHHHHHHHHHHHHHTS
T ss_pred             ecCCcc------------hHHH-HHHHHHcCCEEEEEc--CC-cCCHHHHHHHHHHHHHhCC
Confidence            865321            1222 345566555566554  31 3467778888887776543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=82.62  E-value=8.6  Score=32.65  Aligned_cols=70  Identities=31%  Similarity=0.401  Sum_probs=47.4

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~-~~fD~  178 (251)
                      ++++++|+|.=+  +++.|.+. + ..|+.+|.|++.++...+-         ..-...+++|+.+  .|++-+ +.+|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~-g-~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE-G-HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-C-CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence            478999998543  45666554 2 4899999999998763321         1246777777754  444433 78999


Q ss_pred             EEEcCC
Q 025534          179 IIGDLA  184 (251)
Q Consensus       179 Ii~D~~  184 (251)
                      ++....
T Consensus        70 vva~t~   75 (225)
T COG0569          70 VVAATG   75 (225)
T ss_pred             EEEeeC
Confidence            998754

>PRK08328 hypothetical protein; Provisional

Probab=82.56  E-value=1.8  Score=36.89  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|||+ |+ ++..|++ .++.+++.+|-|.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence            467899999985 43 3445555 4788999998664

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.55  E-value=11  Score=31.78  Aligned_cols=76  Identities=22%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      .++++|+.|+++|.   +++.+++. + .+|..++.+++-.+...+.+...     ..++.++..|..+      .+.. 
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~   78 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFARE-G-AKVVVADRDAAGGEETVALIREA-----GGEALFVACDVTRDAEVKALVEQT   78 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45789999986543   33444443 3 58999999987665544433221     2467777777643      2211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-.+.|+|+.++.
T Consensus        79 ~~~~g~id~li~~ag   93 (253)
T PRK06172         79 IAAYGRLDYAFNNAG   93 (253)
T ss_pred             HHHhCCCCEEEECCC
Confidence              1246899998864

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=82.46  E-value=5.3  Score=39.98  Aligned_cols=102  Identities=12%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHH
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~  168 (251)
                      ++|-+||+|+=+  ++..++.. + -.|+.+|.+++.++.++++....      ...+.       -.+++.. .|. +-
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~  389 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASK-G-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-AG  389 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence            689999998543  45555554 4 58999999999998877654211      00000       0123222 121 11


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +    ...|+||-..++..       -..+++|++ +.+.++|+.+|+.|+.+
T Consensus       390 ~----~~aDlViEav~E~l-------~~K~~vf~~-l~~~~~~~~ilasnTS~  430 (714)
T TIGR02437       390 F----DNVDIVVEAVVENP-------KVKAAVLAE-VEQHVREDAILASNTST  430 (714)
T ss_pred             h----cCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            1    46889998766422       124688999 79999999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.42  E-value=22  Score=31.31  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=42.5

Q ss_pred             CCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD  177 (251)
                      .+.++|++||+|+-+-  +..+++ .+..+|+.++.+++-.+...+.+...     .+.+.+.. .+..+.    -..+|
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~-----~~~~~~~~~~~~~~~----~~~aD  194 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR-----FPAARATAGSDLAAA----LAAAD  194 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh-----CCCeEEEeccchHhh----hCCCC
Confidence            4568999999986543  333344 35678999999976655444333211     12233332 222111    24689


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +||.-.+
T Consensus       195 iVInaTp  201 (284)
T PRK12549        195 GLVHATP  201 (284)
T ss_pred             EEEECCc
Confidence            9887654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.32  E-value=2.2  Score=39.39  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=43.4

Q ss_pred             CCeEEEEcchHHHHhcC-CCceeE-EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          156 PRLELVINDARAELESR-KESYDV-IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       156 ~rv~~~~~D~~~~l~~~-~~~fD~-Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+++++.++..++++.. ++++|. |++|..+ |. .+   -...+.++. +.+.++|||+++..+
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm-~~---~~~~~~~~~-l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WM-DP---EQLNEEWQE-LARTARPGARVLWRS  334 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hC-CH---HHHHHHHHH-HHHHhCCCCEEEEee
Confidence            79999999999999864 689995 5556654 21 22   113467787 799999999999876

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=82.18  E-value=36  Score=30.46  Aligned_cols=114  Identities=19%  Similarity=0.307  Sum_probs=62.0

Q ss_pred             cEEEEEecCceeEE-EEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECC
Q 025534           59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID  135 (251)
Q Consensus        59 ~i~v~~~~~~g~~l-~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid  135 (251)
                      .+.+++... |+.+ .+||...+.-+..- - -.+. ...+..++.+++++||+|.=+-  +..++...+..+|..++.+
T Consensus        86 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaa-~-sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~  161 (325)
T PRK08618         86 TVILSDFET-GEVLAILDGTYLTQIRTGA-L-SGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT  161 (325)
T ss_pred             EEEEEeCCC-CceEEEEccchhhhhhHHH-H-HHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence            466666543 4433 56665543321110 0 1111 1223446778999999985542  2333334467899999999


Q ss_pred             hHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       136 ~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      ++-.+...+.+...   + ..++. ...|..+.+    ...|+|++-.+.
T Consensus       162 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s  202 (325)
T PRK08618        162 FEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA  202 (325)
T ss_pred             HHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence            88766544443211   0 11222 246665555    358999987653

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=82.11  E-value=4.8  Score=41.82  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             cchhHHHHHHHhHhh--cCCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534           84 DEFIYHESLVHPALL--HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus        84 ~~~~y~e~l~~~~~~--~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      |+..|.+.+..+..-  ..-...+||++|||+=+  ++..|.. .++.+++.+|-+.
T Consensus         3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~l-aGVg~iti~D~d~   58 (1008)
T TIGR01408         3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVL-AGVKSVTLHDTEK   58 (1008)
T ss_pred             hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCe
Confidence            445677665432211  11245789999996422  2333333 5788999999775

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=82.01  E-value=11  Score=33.60  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD  177 (251)
                      .++.+||+.|+|. |..+.++++..+..+|.+++.+++-.+.++++ ...      .-+.....|..+.+.+ .+ +.+|
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d  243 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVD  243 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCC
Confidence            3467899997532 22344555555544899999999988888764 211      1111112233333322 22 4599


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+-....            .+.++. ..+.|+++|.++.-
T Consensus       244 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~  271 (351)
T cd08233         244 VSFDCAGV------------QATLDT-AIDALRPRGTAVNV  271 (351)
T ss_pred             EEEECCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence            99865321            123455 46789999988764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=81.88  E-value=10  Score=33.51  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             CccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534           76 GKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus        76 g~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      |.+.-..-|..-+.+.|.....-.....++||++|.|+-+-  +..|++. +..+|+.+..+++-.+...+.++
T Consensus        99 g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~~~i~V~NRt~~ra~~La~~~~  171 (283)
T COG0169          99 GKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GAKRITVVNRTRERAEELADLFG  171 (283)
T ss_pred             CEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhh
Confidence            44433333433344445432111122468899999986653  4455554 56789999997766555544444

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=81.86  E-value=13  Score=35.07  Aligned_cols=38  Identities=32%  Similarity=0.471  Sum_probs=27.2

Q ss_pred             eEEEEecCchHHHHHHHh----c---CCCcEEEEEECChHHHHHHH
Q 025534          105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEFCK  143 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~a~  143 (251)
                      ||.+||+|+. .+..+.+    .   -+..+|+.+|||++-++...
T Consensus         2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~   46 (437)
T cd05298           2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA   46 (437)
T ss_pred             eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH
Confidence            6889999996 5544433    2   23578999999997776533

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN02702 L-idonate 5-dehydrogenase

Probab=81.78  E-value=16  Score=32.85  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE--EEcchHHHHh----cCCC
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE----SRKE  174 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~--~~~D~~~~l~----~~~~  174 (251)
                      ...+||++|+|. |..+..+++..+...|++++.++.-.+.++++ ...      ..+.+  ...+..+.+.    ...+
T Consensus       181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~~~  253 (364)
T PLN02702        181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GAD------EIVLVSTNIEDVESEVEEIQKAMGG  253 (364)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEecCcccccHHHHHHHHhhhcCC
Confidence            467899997531 33445566665656789999999888888774 211      01111  1123323222    1235


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+|+|+-....     +       ..+.. ..+.|+++|.++..
T Consensus       254 ~~d~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~  284 (364)
T PLN02702        254 GIDVSFDCVGF-----N-------KTMST-ALEATRAGGKVCLV  284 (364)
T ss_pred             CCCEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEE
Confidence            68988854221     1       23455 56789999988754

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=81.39  E-value=22  Score=30.67  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..+.+||+.|+  +.|..+.++++..+ .+|+++..+++-.+.++++ +..       .+-....+..+.+.+.++.+|+
T Consensus       141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~~-------~~~~~~~~~~~~i~~~~~~~d~  211 (320)
T cd08243         141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GAD-------EVVIDDGAIAEQLRAAPGGFDK  211 (320)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCc-------EEEecCccHHHHHHHhCCCceE
Confidence            45689999986  45556677777765 5799999888887777542 211       1100012333333222457999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+....     +        ..+.. +.+.|+++|.++..
T Consensus       212 vl~~~~-----~--------~~~~~-~~~~l~~~g~~v~~  237 (320)
T cd08243         212 VLELVG-----T--------ATLKD-SLRHLRPGGIVCMT  237 (320)
T ss_pred             EEECCC-----h--------HHHHH-HHHHhccCCEEEEE
Confidence            984321     1        22444 46788899988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07035 short chain dehydrogenase; Provisional

Probab=81.36  E-value=13  Score=31.32  Aligned_cols=76  Identities=13%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      ..+.||+.|+++|.   +++.++++ + .+|..++.++.-.+...+.+...     ..++.++..|..+.      +.  
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   79 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQ-G-AHVIVSSRKLDGCQAVADAIVAA-----GGKAEALACHIGEMEQIDALFAHI   79 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence            45789999987664   34555554 4 58999999877665544433211     23455555554322      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-.+.|+++..+.
T Consensus        80 ~~~~~~id~li~~ag   94 (252)
T PRK07035         80 RERHGRLDILVNNAA   94 (252)
T ss_pred             HHHcCCCCEEEECCC
Confidence             11246899998774

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=81.36  E-value=19  Score=32.46  Aligned_cols=45  Identities=20%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .++.+||+.|+|.= .++..+++..+..+|++++.+++-.+.+++.
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~  231 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF  231 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            45688999986421 1344556665655899999999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.35  E-value=13  Score=30.89  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=44.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.+++|+.|+++|.   ++..+++. + .+|+.++.++.-.+.+.+.+..     ...++.++..|..+.      +.. 
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~-G-~~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~   76 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQK-G-AKLALIDLNQEKLEEAVAECGA-----LGTEVRGYAANVTDEEDVEATFAQI   76 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHH
Confidence            45789999975443   22333333 3 5799999998765554443321     134677777775321      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        ...+.|.||..+.
T Consensus        77 ~~~~~~id~vi~~ag   91 (253)
T PRK08217         77 AEDFGQLNGLINNAG   91 (253)
T ss_pred             HHHcCCCCEEEECCC
Confidence              1246899998764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=81.18  E-value=24  Score=31.42  Aligned_cols=96  Identities=19%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHH-HHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~  178 (251)
                      ..++|+++|+|.=+. ....+...+..+|++++.+++- .++++++ +        .  ..+. .|..+.+    ..+|+
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g--------~--~~~~~~~~~~~l----~~aDv  241 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G--------G--NAVPLDELLELL----NEADV  241 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C--------C--eEEeHHHHHHHH----hcCCE
Confidence            578999999854332 1122222345689999999864 4566653 1        1  1221 2333333    35899


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ||.-.+.+.   +      .+.++. +.+....++.+++....|
T Consensus       242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP  275 (311)
T cd05213         242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence            998865332   1      233444 222233357788776544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=81.14  E-value=12  Score=32.97  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=25.0

Q ss_pred             CCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChH
Q 025534          101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~  137 (251)
                      .+.++||+||+|+-+-+  ..++. .+..+|+.+..+++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCcc
Confidence            35679999999855433  22333 35679999999864

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.13  E-value=5.8  Score=34.33  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=46.0

Q ss_pred             HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCc
Q 025534          117 AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLY  196 (251)
Q Consensus       117 ~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~  196 (251)
                      ++.|.+.....+|+++|.++..++.|++. +.         +.-...+ .+.+    ..+|+||+..|-         -.
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~---------~~~~~~~-~~~~----~~~DlvvlavP~---------~~   57 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALEL-GI---------IDEASTD-IEAV----EDADLVVLAVPV---------SA   57 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TS---------SSEEESH-HHHG----GCCSEEEE-S-H---------HH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CC---------eeeccCC-HhHh----cCCCEEEEcCCH---------HH
Confidence            55666654456999999999999998764 11         1112223 3333    357999998652         12


Q ss_pred             cHHHHHHHHcccCCCCcEEE
Q 025534          197 TKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       197 ~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ..+++++ +...+++|++++
T Consensus        58 ~~~~l~~-~~~~~~~~~iv~   76 (258)
T PF02153_consen   58 IEDVLEE-IAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHHHH-HHCGS-TTSEEE
T ss_pred             HHHHHHH-hhhhcCCCcEEE
Confidence            4578888 788888877665

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=81.08  E-value=2  Score=42.22  Aligned_cols=34  Identities=21%  Similarity=0.479  Sum_probs=26.1

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|+|+ |. +++.|++. ++.+++.||-|.
T Consensus       337 ~~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~  372 (664)
T TIGR01381       337 SQLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGK  372 (664)
T ss_pred             hcCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCE
Confidence            367999999997 55 45666664 789999999764

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=81.06  E-value=22  Score=31.62  Aligned_cols=107  Identities=19%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             CeEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHh--chhcccCCCCCCCeEEE-EcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKS--YLVVNKEAFSDPRLELV-INDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~--~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD~  178 (251)
                      .+|-+||+|. |.. +..++.+ +..+|+.+|++++..+ ++.  .....  .......++. .+|..+ +    ..-|+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~~l~~-g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~----~~aDi   72 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK-ELADLVLLDVVEGIPQ-GKALDMYEAS--PVGGFDTKVTGTNNYAD-T----ANSDI   72 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCCChhH-HHHHhhhhhh--hccCCCcEEEecCCHHH-h----CCCCE
Confidence            4789999986 433 3333343 3237999999877533 221  11100  0111122343 366443 2    35799


Q ss_pred             EEEcCCCCCCCCcc-cCC--cc----HHHHHHHHcccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEGGPC-YKL--YT----KSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l--~~----~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |++-+..|...+.. ..+  ..    .++.+. +.+. .|++++++-++|
T Consensus        73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~-I~~~-~p~~~iIv~tNP  120 (305)
T TIGR01763        73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGR-IMEH-SPNPIIVVVSNP  120 (305)
T ss_pred             EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecCc
Confidence            99977644311110 001  11    234444 3444 588988765543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=80.91  E-value=9.6  Score=33.59  Aligned_cols=76  Identities=13%  Similarity=0.262  Sum_probs=39.7

Q ss_pred             CCCCeEEEEecCchHH---HHHHHhcCCCcEEEEEECCh----HHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhc
Q 025534          101 PNPKTIFIMGGGEGST---AREILRHKTVEKVVMCDIDE----EVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~---~~~l~~~~~~~~v~~VEid~----~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~  171 (251)
                      .+.++||++|+| |..   +..+++ .+..+|+.++.++    ..-+++++. ..     ..+.+.+...|..+  -+..
T Consensus       124 ~~~k~vlI~GAG-GagrAia~~La~-~G~~~V~I~~R~~~~~~~a~~l~~~l-~~-----~~~~~~~~~~d~~~~~~~~~  195 (289)
T PRK12548        124 VKGKKLTVIGAG-GAATAIQVQCAL-DGAKEITIFNIKDDFYERAEQTAEKI-KQ-----EVPECIVNVYDLNDTEKLKA  195 (289)
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHH-CCCCEEEEEeCCchHHHHHHHHHHHH-hh-----cCCCceeEEechhhhhHHHh
Confidence            356789999996 432   222333 3556799999985    333333322 11     11233343344322  1221


Q ss_pred             CCCceeEEEEcCC
Q 025534          172 RKESYDVIIGDLA  184 (251)
Q Consensus       172 ~~~~fD~Ii~D~~  184 (251)
                      .-..+|+||...+
T Consensus       196 ~~~~~DilINaTp  208 (289)
T PRK12548        196 EIASSDILVNATL  208 (289)
T ss_pred             hhccCCEEEEeCC
Confidence            1246799998765

>PRK07454 short chain dehydrogenase; Provisional

Probab=80.87  E-value=15  Score=30.51  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=44.8

Q ss_pred             CCCeEEEEecCchHH----HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh-
Q 025534          102 NPKTIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~----~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-  170 (251)
                      +.+++|+.|+. |.+    ++.++++ + .+|.+++.+++-.+...+....     ...++.++..|..+.      +. 
T Consensus         5 ~~k~vlItG~s-g~iG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~   76 (241)
T PRK07454          5 SMPRALITGAS-SGIGKATALAFAKA-G-WDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAE   76 (241)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHH
Confidence            45688999864 444    4444443 3 4899999998765544333221     124677788776432      11 


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        +.-.+.|+|+..+.
T Consensus        77 ~~~~~~~id~lv~~ag   92 (241)
T PRK07454         77 LLEQFGCPDVLINNAG   92 (241)
T ss_pred             HHHHcCCCCEEEECCC
Confidence              11246899998764

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=80.80  E-value=1.1  Score=39.43  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVE  140 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~  140 (251)
                      -..++||++|||.|.-...+..+. ...+..-|.|.++++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence            467999999999999888777653 468999999999985

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=80.74  E-value=18  Score=32.14  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhc---hhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +|.+||+|.=+.  +..+.+. + .+|+.++.+++.++..++.   ..........+++++. .|..+.+   .+..|+|
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli   75 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-K-ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI   75 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-C-CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence            589999986543  4444443 3 5799999999888766652   2211000011234433 4443333   2468999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcc-cCCCCcEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFV  216 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~-~L~pgG~l~  216 (251)
                      ++-.++.         ...+.++. ++. .++++..++
T Consensus        76 iiavks~---------~~~~~l~~-l~~~~l~~~~~vv  103 (326)
T PRK14620         76 ILAVPTQ---------QLRTICQQ-LQDCHLKKNTPIL  103 (326)
T ss_pred             EEEeCHH---------HHHHHHHH-HHHhcCCCCCEEE
Confidence            9876532         23567777 676 788776444

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.70  E-value=7.1  Score=36.79  Aligned_cols=71  Identities=13%  Similarity=0.127  Sum_probs=40.4

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChH-HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~-vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+++|+++|+|.-++ +..++...+ .+|+++|.++. ..+...+.+.       ...++++.++...    ....+|+|
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l~-------~~gv~~~~~~~~~----~~~~~D~V   82 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAILE-------ALGATVRLGPGPT----LPEDTDLV   82 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHHH-------HcCCEEEECCCcc----ccCCCCEE
Confidence            467999999985544 233333334 58999996653 2222222222       1246666655332    12468999


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      +..+-
T Consensus        83 v~s~G   87 (480)
T PRK01438         83 VTSPG   87 (480)
T ss_pred             EECCC
Confidence            98764

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=80.68  E-value=5.1  Score=36.46  Aligned_cols=76  Identities=17%  Similarity=0.309  Sum_probs=48.2

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++++||++|+++|.  .+.+++++.+ ...+..-.+.+-++++++.=.       +.-+.....|..+-+.+ +...||
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA-------d~vvdy~~~~~~e~~kk~~~~~~D  227 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA-------DEVVDYKDENVVELIKKYTGKGVD  227 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCC-------cEeecCCCHHHHHHHHhhcCCCcc
Confidence            346789999998765  5678888765 456666788889998887521       11122222344443332 256799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +|+-...
T Consensus       228 vVlD~vg  234 (347)
T KOG1198|consen  228 VVLDCVG  234 (347)
T ss_pred             EEEECCC
Confidence            9996554

>PLN02427 UDP-apiose/xylose synthase

Probab=80.62  E-value=7.4  Score=35.38  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~f  176 (251)
                      ++++||+.|+ +|.++.++++.   .+..+|++++.++.-++...   ..... ...++++++.+|..+.  +...-..+
T Consensus        13 ~~~~VlVTGg-tGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~---~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427         13 KPLTICMIGA-GGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL---EPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             cCcEEEEECC-cchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh---ccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            4578999987 56666655542   12257999987654332211   11000 0125799999988653  22222358


Q ss_pred             eEEEEcCC
Q 025534          177 DVIIGDLA  184 (251)
Q Consensus       177 D~Ii~D~~  184 (251)
                      |+||.-+.
T Consensus        88 d~ViHlAa   95 (386)
T PLN02427         88 DLTINLAA   95 (386)
T ss_pred             CEEEEccc
Confidence            99998664

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.61  E-value=4.3  Score=36.50  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .++..|.+.|+|+=+++ .+-++..++.+|.+||+|++=.+.|+++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            35678888888765544 4445666788999999999999999986

>PRK05867 short chain dehydrogenase; Provisional

Probab=80.54  E-value=11  Score=31.91  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.+.+|+.|+++|.   +++.++++ + .+|..++.+++-.+...+.+...     ..++..+..|..+.      +.  
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEA-G-AQVAIAARHLDALEKLADEIGTS-----GGKVVPVCCDVSQHQQVTSMLDQV   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHH
Confidence            46789999987653   34555554 3 58999999987766555444321     24566777665432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++.
T Consensus        81 ~~~~g~id~lv~~ag   95 (253)
T PRK05867         81 TAELGGIDIAVCNAG   95 (253)
T ss_pred             HHHhCCCCEEEECCC
Confidence             11257899998864

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=80.53  E-value=4.1  Score=31.81  Aligned_cols=42  Identities=21%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             EEecCch--HHHHHHH--hcCCCcEEEEEECChHHHHHHHhc--hhcc
Q 025534          108 IMGGGEG--STAREIL--RHKTVEKVVMCDIDEEVVEFCKSY--LVVN  149 (251)
Q Consensus       108 ~iG~G~G--~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~--~~~~  149 (251)
                      |||+..|  ......+  +..+..+|.++|.+|...+..+++  +..+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7899999  5555443  233447899999999999988887  5444

; PDB: 2PY6_A.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.50  E-value=17  Score=30.66  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +++++|+.|+++|.   ++..++++ + .+|+.++.+++.++...+.+...     ..++.++..|..+      .+.. 
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~   82 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGA-G-AHVLVNGRNAATLEAAVAALRAA-----GGAAEALAFDIADEEAVAAAFARI   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            56889999975543   33344443 4 58999999987665544433321     2457777766432      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|.|+..+.
T Consensus        83 ~~~~~~id~vi~~ag   97 (256)
T PRK06124         83 DAEHGRLDILVNNVG   97 (256)
T ss_pred             HHhcCCCCEEEECCC
Confidence              1246899998865

>PRK12829 short chain dehydrogenase; Provisional

Probab=80.48  E-value=16  Score=30.83  Aligned_cols=74  Identities=18%  Similarity=0.354  Sum_probs=44.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---------
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---------  169 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---------  169 (251)
                      +.+++|+.|+.+|.   ++..++++ + .+|+++..+++..+...+...       ..++.++..|..+.-         
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   80 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEA-G-ARVHVCDVSEAALAATAARLP-------GAKVTATVADVADPAQVERVFDTA   80 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHh-------cCceEEEEccCCCHHHHHHHHHHH
Confidence            56899999986443   23334443 3 479999998876654433221       125677777754321         


Q ss_pred             hcCCCceeEEEEcCC
Q 025534          170 ESRKESYDVIIGDLA  184 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~  184 (251)
                      .+.-.+.|.|+..+.
T Consensus        81 ~~~~~~~d~vi~~ag   95 (264)
T PRK12829         81 VERFGGLDVLVNNAG   95 (264)
T ss_pred             HHHhCCCCEEEECCC
Confidence            111246899998875

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=80.38  E-value=27  Score=30.80  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=27.7

Q ss_pred             CCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHHH
Q 025534          101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFC  142 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a  142 (251)
                      .++++||+||+|+-+-+  ..+++. +..+|+.++.+++-.+..
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHH
Confidence            34689999999866533  334443 567899999987544433

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.12  E-value=12  Score=31.35  Aligned_cols=76  Identities=20%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..++||+.|+++|.   ++++++++ + .+|++++.++.-.+...+.+...     ..++..+..|..+.      +.. 
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   76 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARA-G-ADVVLAARTAERLDEVAAEIDDL-----GRRALAVPTDITDEDQCANLVALA   76 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHh-----CCceEEEecCCCCHHHHHHHHHHH
Confidence            45789999986554   34455554 3 58999999887655444333211     24677777776432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+|+.++.
T Consensus        77 ~~~~g~~d~vi~~ag   91 (258)
T PRK07890         77 LERFGRVDALVNNAF   91 (258)
T ss_pred             HHHcCCccEEEECCc
Confidence              1246899999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3anx_A	314	Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR		2e-49
1uir_A	314	Crystal Structure Of Polyamine Aminopropyltransfeas		6e-49
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		2e-39
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		1e-34
2o05_A	304	Human Spermidine Synthase Length = 304		8e-33
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		1e-32
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		2e-32
1jq3_A	296	Crystal Structure Of Spermidine Synthase In Complex		6e-32
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		3e-31
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		2e-30
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		1e-29
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		6e-26
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		7e-26
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		7e-26
2e5w_A	280	Crystal Structure Of Spermidine Synthase From Pyroc		4e-24

>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 4/200 (2%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314

Iteration: 1
 Score =  190 bits (483), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   Q G   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQTG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFK 243
           + +H  V   ++ T+R+ F+
Sbjct: 199 LLTHHRVHPVVHRTVREAFR 218

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 28  KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
           K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct: 10  KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 68
Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct: 69  YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128
Query: 148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
             N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct: 129 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYE-GCK 185
Query: 207 PRLNPEGIFVTQAG 220
             LNP GIFV Q G
Sbjct: 186 RCLNPGGIFVAQNG 199

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 61  SLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPN 120
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   RE+ RH ++E++  C+ID+ VV+  K +       + DPR+ LVI
Sbjct: 121 PKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D  A L++  E SYD +I D +DPI  GP  +L+ K F++ V +  L P G+  TQA  
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA-- 235
Query: 222 AGIFSHTEVFSCIYNTLRQVFKCGYN 247
             ++ H ++   I +  R++FK   N
Sbjct: 236 ESLWLHXDIIEDIVSNCREIFKGSVN 261

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 5/211 (2%)
Query: 11  SQANGADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180
Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
            GP   L+ +S+Y+ ++K  L  +G+   Q 
Sbjct: 181 -GPAESLFKESYYQ-LMKTALKEDGVLCCQG 209

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 5/207 (2%)
Query: 15  GADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKAL 72
           G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +G  L
Sbjct: 6   GPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVL 65
Query: 73  VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132
           V+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C
Sbjct: 66  VLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQC 125
Query: 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC 192
           +IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+  GP 
Sbjct: 126 EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPA 183
Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQA 219
             L+ +S+Y+ ++K  L  +G+   Q 
Sbjct: 184 ESLFKESYYQ-LMKTALKEDGVLCCQG 209

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 114/190 (60%), Gaps = 3/190 (1%)
Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YH
Sbjct: 3   LWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYH 62
Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L   
Sbjct: 63  EMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L
Sbjct: 123 AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-AL 179
Query: 210 NPEGIFVTQA 219
             +GIFV Q 
Sbjct: 180 KEDGIFVAQT 189

>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 5/217 (2%)
Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73
Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G   + L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGH-LFTEEFYQ-AC 191
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
              L  +G+F   A     F     F   Y  + +VF
Sbjct: 192 YDALKEDGVF--SAETEDPFYDIGWFKLAYRRISKVF 226

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 13/210 (6%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE LVHPA+L HP 
Sbjct: 16  AFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPK 75
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDPRLE 159
           PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++    EA  + + E
Sbjct: 76  PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE 134
Query: 160 ---LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
              L I D   E       +DVII D  DP+  GP   L+++ FY +V     NP GI+V
Sbjct: 135 KAKLTIGDG-FEFIKNNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNP-GIYV 190
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246
           TQAG   +F+  E+ S  Y  +++VF   Y
Sbjct: 191 TQAGSVYLFT-DELISA-YKEMKKVFDRVY 218

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 121/201 (60%), Gaps = 5/201 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  +  HP
Sbjct: 48  FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
           +PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L+L 
Sbjct: 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
             D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q   
Sbjct: 168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQG-- 222
Query: 222 AGIFSHTEVFSCIYNTLRQVF 242
             ++ H  + + +    R++F
Sbjct: 223 ESVWLHLPLIAHLVAFNRKIF 243

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 31  WYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
           W+ EE   N +W     S  +  +L+   T++Q + + ++ P   +G    +DG +Q  +
Sbjct: 19  WFREE---NDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTD 75
Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQS 135
Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP--AGPASKLFGEAFY 193
Query: 202 EFVVKPRLNPEGIFVTQA 219
           + V++  L P+GI   Q 
Sbjct: 194 KDVLR-ILKPDGICCNQG 210

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 56  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 115
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 175
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q 
Sbjct: 176 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC 230

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 17  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 76
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 77  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 136
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q
Sbjct: 137 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQ 190

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 18  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 77
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 78  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 137
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q
Sbjct: 138 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQ 191

>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 124/210 (59%), Gaps = 12/210 (5%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   +   ++ YQ I + +T+ FGK L IDG +Q     E  YHE LVHPA+L HPN
Sbjct: 17  AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPN 76
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDP-- 156
           P+ + I+GGG+G   RE+L+H+ VE+V+M +ID++V+E    Y+ ++    ++  SD   
Sbjct: 77  PRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHE 136
Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           + +L+I D    +E     +DVII D  DP+  GP   L+++ FY+   +  LN  GI+V
Sbjct: 137 KGKLIIGDGVKFIEEN-SGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYRA-LNDPGIYV 192
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246
           TQAG   +F  T+ F   Y  +R+VF   Y
Sbjct: 193 TQAGSVYLF--TDEFLTAYRKMRKVFDKVY 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	1e-110
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	1e-110
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-109
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	1e-109
2o07_A	304	Spermidine synthase; structural genomics, structur	1e-108
2i7c_A	283	Spermidine synthase; transferase, structural genom	1e-107
2pt6_A	321	Spermidine synthase; transferase, structural genom	1e-106
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	1e-106
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	1e-104
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	1e-104
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	7e-98
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	1e-81
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	3e-79
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	4e-43
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	5e-05
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	3e-04

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score =  319 bits (819), Expect = e-110
 Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP   G    L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACY 192

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
              L  +G+F  +      F     F   Y  + +VF 
Sbjct: 193 D-ALKEDGVFSAETE--DPFYDIGWFKLAYRRISKVFP 227

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score =  318 bits (817), Expect = e-110
 Identities = 98/215 (45%), Positives = 137/215 (63%), Gaps = 4/215 (1%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY   VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRL-VKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           LNP G+   Q G   + +H  V   ++ T+R+ F+
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFR 218

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score =  314 bits (808), Expect = e-109
 Identities = 73/213 (34%), Positives = 124/213 (58%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-ALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GIFV Q      +   E+ + +   ++++F 
Sbjct: 181 EDGIFVAQTDN--PWFTPELITNVQRDVKEIFP 211

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score =  313 bits (803), Expect = e-108
 Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 11  SQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E          S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61

Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121

Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180

Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            GP   L+ +S+Y+  +K  L  +G+   Q      + H ++   +    + +F 
Sbjct: 181 -GPAESLFKESYYQL-MKTALKEDGVLCCQGEC--QWLHLDLIKEMRQFCQSLFP 231

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score =  310 bits (797), Expect = e-107
 Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 5   WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 65  HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L P G  V Q     ++ H      +    +++FK
Sbjct: 182 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFK 214

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score =  310 bits (796), Expect = e-106
 Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 43  WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 219

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L P G  V Q     ++ H      +    +++FK
Sbjct: 220 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFK 252

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score =  308 bits (791), Expect = e-106
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 5/213 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
                      +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E
Sbjct: 37  QEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQE 96

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  +  HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L    
Sbjct: 97  MLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS 156

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             FS P+L+L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE  ++  L 
Sbjct: 157 CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYEL-LRDALK 213

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +GI  +Q     ++ H  + + +    R++F 
Sbjct: 214 EDGILSSQGES--VWLHLPLIAHLVAFNRKIFP 244

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score =  302 bits (776), Expect = e-104
 Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 13/219 (5%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
            + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE
Sbjct: 4   AFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++ 
Sbjct: 64  PLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDN 122

Query: 151 EAF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204
                       + +L I D    ++     +DVII D  DP+  GP   L+++ FY +V
Sbjct: 123 GLLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYV 179

Query: 205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
               LN  GI+VTQAG   ++  T+     Y  +++VF 
Sbjct: 180 YD-ALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFD 215

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score =  304 bits (780), Expect = e-104
 Identities = 81/240 (33%), Positives = 127/240 (52%), Gaps = 8/240 (3%)

Query: 7   SNGISQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLD 64
           +  +   NG   K  A        W+ E          S  +  +L  G++ YQD+ +  
Sbjct: 23  AATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQ 82

Query: 65  TKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK 124
           +  +GK LV+DG +Q  E DE  Y E + H  L   PNPK + ++GGG+G   RE+ RH 
Sbjct: 83  SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA 142

Query: 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183
           ++E++ MC+ID+ VV+  K +       + DPR+ LVI D  A L++  E SYD +I D 
Sbjct: 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS 202

Query: 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           +DPI  GP  +L+ K F++ V +  L P G+  TQA    ++ H ++   I +  R++FK
Sbjct: 203 SDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFK 257

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score =  287 bits (736), Expect = 7e-98
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 11/222 (4%)

Query: 28  KSCWYEEEIEE--NLRWSFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
              W+ EE ++      S  +  +L+   T++Q + + ++ P   +G  + +DG +Q  +
Sbjct: 16  SGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTD 75

Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV+E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS 135

Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPA--GPASKLFGEAFY 193

Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           + V++  L P+GI   Q     I+   E+   +   +R+   
Sbjct: 194 KDVLR-ILKPDGICCNQGES--IWLDLELIEKMSRFIRETGF 232

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score =  238 bits (609), Expect = 3e-79
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L   +    I  E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLF-KNFLHIESE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H         K + I+ G +   A ++ ++     +     DE++++   S+     
Sbjct: 61  LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFF---- 114

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             F + +       A+  L+   + YD+I       I       L             L 
Sbjct: 115 PHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDI--HRIDGLKR----------MLK 162

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            +G+F++ A                  +  VF 
Sbjct: 163 EDGVFISVAKH--PLLEHVSMQNALKNMGGVFS 193

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score =  147 bits (373), Expect = 4e-43
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 24/209 (11%)

Query: 48  SILHTGETRYQDIALLD--TKPFGKALVIDGKLQSA------EVDEFIYHESLVHPALLH 99
            I  T E  Y  I L        G  + I+G   S       +  EF Y   +   A   
Sbjct: 22  PIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAF 81

Query: 100 -----HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS 154
                  +   I  +GGG  + AR         +  + ++D E+    + +     +   
Sbjct: 82  IDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWF----DIPR 137

Query: 155 DPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213
            PR+++ ++DAR   ES    S DVII D+             T  F+E      L P G
Sbjct: 138 APRVKIRVDDARMVAESFTPASRDVIIRDVFAG--AITPQNFTTVEFFE-HCHRGLAPGG 194

Query: 214 IFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
           ++V   G     S           + +VF
Sbjct: 195 LYVANCGD---HSDLRGAKSELAGMMEVF 220

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFS 154
           A L   N + +  +G G+G+  + +L+    E++   D+    +E  +  L  +      
Sbjct: 23  AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82

Query: 155 DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214
             RL+L+        + R   YD     + + IE     +L     +E V+     P+ +
Sbjct: 83  WERLQLIQGAL-TYQDKRFHGYDAAT--VIEVIEHLDLSRLGA---FERVLFEFAQPKIV 136

Query: 215 FVT----------QAGPAGIFSH 227
            VT             PAG   H
Sbjct: 137 IVTTPNIEYNVKFANLPAGKLRH 159

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD 155
           A+L   N K +  +G GEG+    +L+ K+ E++   D+   V+E  K  L +++     
Sbjct: 23  AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82

Query: 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215
            +   +   +    + R   YD     + + IE     +L     +E V+     P+ + 
Sbjct: 83  RKRISLFQSSLVYRDKRFSGYDAAT--VIEVIEHLDENRLQA---FEKVLFEFTRPQTVI 137

Query: 216 VT 217
           V+
Sbjct: 138 VS 139

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
           T++ +GGG GS A E LR       V  +I EE  E   S    N           V   
Sbjct: 28  TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS----NAINLGVSDRIAVQQG 83

Query: 165 ARAELESRKESYDVIIGDLADPIEG 189
           A    +   ++ DVI         G
Sbjct: 84  APRAFDDVPDNPDVIFIGGGLTAPG 108

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA--- 152
            LL+  NPK +       G            E+V + DI E+  E  K  +++N +    
Sbjct: 41  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100

Query: 153 --------FSDPRLELVINDARAELESRKESYDVIIGDL 183
                     +  + +  +DA   +  R   +  I  D 
Sbjct: 101 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	100.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	100.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	100.0
2o07_A	304	Spermidine synthase; structural genomics, structur	100.0
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	100.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	100.0
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	100.0
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	100.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	100.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	100.0
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	100.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	100.0
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	100.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.97
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.63
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.58
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.58
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.58
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.56
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.55
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.55
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.55
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.55
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.55
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.55
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.54
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.54
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.54
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.54
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.54
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.53
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.53
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.53
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.52
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.52
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.52
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.51
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.51
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.51
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.51
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.5
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.5
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.49
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.49
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.48
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.48
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.48
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.47
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.45
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.45
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.44
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.44
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.44
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.44
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.44
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.43
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.43
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.43
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.43
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.42
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.41
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.41
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.4
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.4
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.39
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.39
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.39
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.39
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.39
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.39
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.38
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.38
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.38
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.38
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.38
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.38
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.38
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.38
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.37
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.37
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.37
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.37
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.36
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.36
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.35
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.35
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.35
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.35
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.35
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.35
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.35
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.35
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.34
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.34
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.34
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.34
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.34
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.33
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.33
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.33
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.33
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.33
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.33
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.33
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.32
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.32
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.32
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.32
3ocj_A	305	Putative exported protein; structural genomics, PS	99.32
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.32
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.32
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.32
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.32
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.32
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.31
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.31
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.31
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.31
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.31
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.31
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.31
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.31
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.31
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.3
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.3
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.29
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.29
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.29
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.29
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.29
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.29
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.29
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.29
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.29
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.28
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.28
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.28
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.28
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.28
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.28
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.28
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.28
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.27
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.27
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.27
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.27
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.26
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.26
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.26
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.25
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.25
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.25
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.25
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.25
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.25
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.25
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.25
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.24
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.23
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.23
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.23
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.23
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.22
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.21
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.21
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.2
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.2
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.2
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.2
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.19
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.19
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.19
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.18
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.17
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.17
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.16
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.16
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.16
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.15
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.15
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.14
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.14
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.14
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.14
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.14
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.13
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.13
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.13
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.13
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.13
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.13
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.11
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.1
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.09
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.09
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.07
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.07
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.06
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.06
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.05
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.04
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.04
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.03
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.03
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.03
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.02
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.02
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.99
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.97
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.97
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.96
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.96
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.95
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.95
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.95
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.93
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.92
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.91
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.89
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.88
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.87
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.87
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.87
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.86
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.86
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.86
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.85
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.85
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.83
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.82
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.81
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.81
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.81
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.79
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.76
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.75
3khk_A	544	Type I restriction-modification system methylation	98.73
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.7
3lkd_A	542	Type I restriction-modification system methyltrans	98.69
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.69
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.68
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.67
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.66
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.62
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.57
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.56
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.56
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.54
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.54
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.53
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.46
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.38
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.26
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.2
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.11
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.09
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.07
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.07
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.82
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.81
3ufb_A	530	Type I restriction-modification system methyltran	97.72
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.67
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.64
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.6
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.53
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.4
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.31
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.28
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.16
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.16
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.06
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.76
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.76
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.73
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.72
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.68
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.65
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.58
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.5
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.5
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.42
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.29
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.29
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.27
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.27
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.24
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.17
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.16
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.14
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.12
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.11
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.09
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.09
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.06
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.98
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.95
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.93
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.92
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.85
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.79
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.71
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.7
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.62
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.59
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.56
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.56
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.56
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.49
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.43
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.37
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.31
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.29
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.26
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.11
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.96
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.84
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.8
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.7
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.61
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.54
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.54
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.52
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.46
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.42
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.31
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.29
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.28
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.22
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.22
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.21
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.12
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.11
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.09
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.08
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.04
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.02
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.79
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.73
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.54
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.39
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.34
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.31
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.26
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.2
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.95
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.49
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	92.38
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.38
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.15
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.12
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.11
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.09
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.08
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.06
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.96
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.91
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.86
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.62
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	91.55
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.48
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.4
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.3
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.25
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.06
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.02
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	90.94
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.92
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.91
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	90.9
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	90.84
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.73
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	90.72
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	90.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.61
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.52
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	90.45
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.43
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.42
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.36
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.26
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.26
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.07
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.98
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.68
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.43
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.42
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.28
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.13
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.13
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	89.07
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	88.93
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	88.91
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.67
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	88.65
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	88.55
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	88.54
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.51
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.44
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.42
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	88.41
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.19
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.07
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	87.88
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	87.71
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	87.7
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	87.55
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.54
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	87.53
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	87.41
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.36
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	87.3
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	87.2
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.17
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.16
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.11
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.04
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	86.99
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	86.98
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	86.8
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.72
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	86.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	86.68
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	86.65
3imf_A	257	Short chain dehydrogenase; structural genomics, in	86.62
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	86.57
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	86.38
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.37
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	86.27
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	86.25
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	86.24
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	86.18
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	86.16
3rih_A	293	Short chain dehydrogenase or reductase; structural	86.1
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	86.03
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	86.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.97
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.88
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	85.79
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.75
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.72
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	85.6
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	85.42
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.27
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	85.16
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	85.05
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	85.05
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.03
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.0
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	84.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	84.85
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	84.81
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	84.77
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	84.69

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=100.00  E-value=1.6e-49  Score=347.79  Aligned_cols=218  Identities=39%  Similarity=0.678  Sum_probs=198.9

Q ss_pred             cccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (251)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V  106 (251)
                      ....|+ |+..++.++.|.++++|++++|+||+|.|++++.+||+|+|||.+|++++|++.|||+|+|+|++.+++|++|
T Consensus         9 ~~~~w~-e~~~~~~~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~V   87 (294)
T 3o4f_A            9 EKKQWH-ETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHV   87 (294)
T ss_dssp             -CEEEE-CCSSSSEEEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             ccccee-eeccCCcceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeE
Confidence            345798 5667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |+||+|+|+++++++++++..+|++|||||+|+++|+++|+ .+.+.+++||++++.+|+++|++...++||+||+|+++
T Consensus        88 LIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~d  167 (294)
T 3o4f_A           88 LIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTD  167 (294)
T ss_dssp             EEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCC
T ss_pred             EEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCC
Confidence            99999999999999999888899999999999999999997 45556789999999999999998888999999999999


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                      |.  +|+..|++.+||+. ++++|+|||++++|.++|  +...+.+..+.++++++||.+.+|..
T Consensus       168 p~--~~~~~L~t~eFy~~-~~~~L~p~Gv~v~q~~sp--~~~~~~~~~~~~~l~~~F~~v~~~~~  227 (294)
T 3o4f_A          168 PI--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGVC--FLQQEEAIDSHRKLSHYFSDVGFYQA  227 (294)
T ss_dssp             CC--CTTCCSSCCHHHHH-HHHTEEEEEEEEEEEEES--SSCCHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             cC--CCchhhcCHHHHHH-HHHHhCCCCEEEEecCCc--ccChHHHHHHHHHHHhhCCceeeeee
Confidence            87  66689999999999 799999999999999888  67788899999999999999988753

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=100.00  E-value=2.1e-40  Score=289.38  Aligned_cols=216  Identities=34%  Similarity=0.701  Sum_probs=195.2

Q ss_pred             cceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEE
Q 025534           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (251)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~  108 (251)
                      .+|++|..+++.+..+.++++|++.+|+||+|.|++++.+|+.|++||..|+++.+++.|+|++.+++++.++++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLd   81 (275)
T 1iy9_A            2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (275)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CccEEEecCCCcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999988877888999999


Q ss_pred             EecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCC
Q 025534          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (251)
Q Consensus       109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~  188 (251)
                      ||||+|.++++++++++..+|++||+|+++++.|+++++.....+.++|++++++|+++++...+++||+|++|++++. 
T Consensus        82 iG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~-  160 (275)
T 1iy9_A           82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (275)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             ECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCC-
Confidence            9999999999999986668999999999999999999864222245789999999999999766789999999999876 


Q ss_pred             CCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       189 ~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                       .+...+++.+|++. ++++|+|||+++++.++|  +...+.++.+.++++++|+++.+|.
T Consensus       161 -~~~~~l~~~~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~  217 (275)
T 1iy9_A          161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYT  217 (275)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             -CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--cccHHHHHHHHHHHHHhCCCeEEEE
Confidence             45568899999999 799999999999998777  5678889999999999999998775

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=100.00  E-value=1.1e-40  Score=299.89  Aligned_cols=221  Identities=21%  Similarity=0.347  Sum_probs=188.0

Q ss_pred             cCcCCCCccccceEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhH
Q 025534           19 KNVALTGYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA   96 (251)
Q Consensus        19 ~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~   96 (251)
                      +.-++|+..+++|+..+  .+++....|.++++||+++|+||+|.|++++.+||+|+|||.+|++++| +.|+|+|+|++
T Consensus       122 ~~~~~~~~~rg~~~~~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~  200 (381)
T 3c6k_A          122 RVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSG  200 (381)
T ss_dssp             CEECCCCEEESCSSCCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTT
T ss_pred             hhcccCccccCCccCceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHH
Confidence            44568988899888766  3578999999999999999999999999999999999999999999998 67999999988


Q ss_pred             hhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-ccCCCC---CCCeEEEEcchHHHHhc-
Q 025534           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFS---DPRLELVINDARAELES-  171 (251)
Q Consensus        97 ~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~---~~rv~~~~~D~~~~l~~-  171 (251)
                      ++.+ ++++||+||+|+|++++++++++. .+|++|||||+|+++|++||+. ++..++   ++|++++++|+++|+++ 
T Consensus       201 l~~~-~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~  278 (381)
T 3c6k_A          201 KEDY-TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY  278 (381)
T ss_dssp             CCCC-TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred             hhcC-CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence            7654 579999999999999999999865 7999999999999999999873 333333   45799999999999974 


Q ss_pred             --CCCceeEEEEcCCCCCC-C---CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          172 --RKESYDVIIGDLADPIE-G---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       172 --~~~~fD~Ii~D~~~~~~-~---~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                        ..++||+||+|++++.. .   ++...|++++||+. ++++|+|||++++|.++|  +. .+.++.+.++|+++|+.+
T Consensus       279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~-~~~~L~p~GVlv~Q~~s~--~~-~~~~~~i~~tl~~vF~~v  354 (381)
T 3c6k_A          279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL-SMKVLKQDGKYFTQGNCV--NL-TEALSLYEEQLGRLYCPV  354 (381)
T ss_dssp             HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHH-HHHTEEEEEEEEEEEEET--TC-HHHHHHHHHHHTTSSSCE
T ss_pred             hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHH-HHHhcCCCCEEEEecCCC--cc-hhHHHHHHHHHHHhCCcc
Confidence              35789999999886431 1   33457899999999 799999999999999887  43 567889999999999987


Q ss_pred             e
Q 025534          246 Y  246 (251)
Q Consensus       246 ~  246 (251)
                      .
T Consensus       355 ~  355 (381)
T 3c6k_A          355 E  355 (381)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=100.00  E-value=1.7e-38  Score=278.27  Aligned_cols=216  Identities=33%  Similarity=0.613  Sum_probs=193.7

Q ss_pred             cceEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534           29 SCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (251)
Q Consensus        29 ~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V  106 (251)
                      ..|+.|.  .+++.+..+...++|++.+|+||+|.|++++.+|+.|++||.+|+++++++.|++++.+++++.++++++|
T Consensus         3 ~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   82 (283)
T 2i7c_A            3 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNV   82 (283)
T ss_dssp             CCEEEECCTTSTTCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEE
T ss_pred             ceeEEEcccCCCCceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeE
Confidence            4799998  66899999999999999999999999999999999999999999999999999999999998878889999


Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~  186 (251)
                      |+||||+|.++++++++.+..+|++||+|+.+++.|+++++..+..+.+++++++++|+++++....++||+|++|++++
T Consensus        83 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~  162 (283)
T 2i7c_A           83 LVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDP  162 (283)
T ss_dssp             EEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCT
T ss_pred             EEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCC
Confidence            99999999999999998666899999999999999999987432223468999999999999876678899999999887


Q ss_pred             CCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      .  .+...+++.+|++. ++++|+|||+++++..+|  +...+.++.+.++++++|+.+.+|.
T Consensus       163 ~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~  220 (283)
T 2i7c_A          163 I--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYAN  220 (283)
T ss_dssp             T--TGGGGGSSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             C--CcchhhhHHHHHHH-HHHhcCCCcEEEEECCCc--ccCHHHHHHHHHHHHHHCCceEEEE
Confidence            6  55567889999999 799999999999998776  6677889999999999999987664

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=100.00  E-value=4.4e-38  Score=278.37  Aligned_cols=224  Identities=31%  Similarity=0.618  Sum_probs=185.3

Q ss_pred             CcCCCCccccceEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHh
Q 025534           20 NVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL   97 (251)
Q Consensus        20 ~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~   97 (251)
                      +...|+.....|+.|..+  ++....+.+.++||+.+|+||+|.|++++.+|+.|++||.+|+++++++.|++++.++++
T Consensus        11 ~~~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l   90 (304)
T 2o07_A           11 AASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPL   90 (304)
T ss_dssp             -------CBTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHH
T ss_pred             CCCCCcccccceEEEeccCCCCceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHH
Confidence            334567778899999865  889999999999999999999999999999999999999999999999999999999888


Q ss_pred             hcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus        98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      +.++++++||+||||+|.++++++++.+..+|++||+|+++++.|+++++.....+.+++++++++|+++++....++||
T Consensus        91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD  170 (304)
T 2o07_A           91 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  170 (304)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             hhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCce
Confidence            77788999999999999999999998666799999999999999999986421113468999999999999876668899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      +|++|++++.  .|...+++.+|++. ++++|+|||+++++..++  +...+..+.+.++++++|+++..+
T Consensus       171 ~Ii~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~  236 (304)
T 2o07_A          171 VIITDSSDPM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYA  236 (304)
T ss_dssp             EEEEECC-------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEE
T ss_pred             EEEECCCCCC--CcchhhhHHHHHHH-HHhccCCCeEEEEecCCc--ccchHHHHHHHHHHHHhCCCceeE
Confidence            9999998776  44456788899999 799999999999998766  666778889999999999988665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=100.00  E-value=7.4e-38  Score=278.04  Aligned_cols=220  Identities=45%  Similarity=0.749  Sum_probs=192.0

Q ss_pred             cccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (251)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V  106 (251)
                      .+.+|++|..+++.+..+.+.++|++.+|+||+|.|++++.+|+.|++||..|++..+++.|++++.+++++.++++++|
T Consensus         2 ~~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   81 (314)
T 1uir_A            2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (314)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCCceEEEEcCCCcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999988888889999


Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |+||||+|.++++++++.+..+|++||+|+.+++.|+++++. +.+.+.+++++++.+|+++++....++||+|++|+++
T Consensus        82 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  161 (314)
T 1uir_A           82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (314)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCC
Confidence            999999999999999986667999999999999999999863 2211346899999999999987667899999999987


Q ss_pred             CC-CCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC-CChHHHHHHHHHHHhhCCceeeec
Q 025534          186 PI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF-SHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       186 ~~-~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~-~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      +. ..+|...+++.+|++. ++++|+|||+++++.++|  + .+.+.++.+.++++++|+++.+|.
T Consensus       162 ~~~~~~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~~l~~~F~~v~~~~  224 (314)
T 1uir_A          162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMI--LLTHHRVHPVVHRTVREAFRYVRSYK  224 (314)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEE--CC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred             cccccCcchhccHHHHHHH-HHHhcCCCcEEEEEccCc--cccCHHHHHHHHHHHHHHCCceEEEE
Confidence            65 1244467889999999 799999999999998765  3 445788999999999999998764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=100.00  E-value=1.2e-37  Score=272.46  Aligned_cols=213  Identities=34%  Similarity=0.664  Sum_probs=186.5

Q ss_pred             cceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEE
Q 025534           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (251)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~  108 (251)
                      .+|++|..+++.+..+.+.++|++.+|+||+|.|++++.+|+.|++||..|+++++++.|++++.+++++.++++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLd   81 (281)
T 1mjf_A            2 ERAFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLV   81 (281)
T ss_dssp             --CEEEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEE
T ss_pred             CccEEEecCCCceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999888877788899999


Q ss_pred             EecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCC-------CCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-------SDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~-------~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ||||+|.++++++++ +..+|++||+|+.+++.|++++.. ...+       .+++++++.+|+++++.. +++||+|++
T Consensus        82 iG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~-~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~  158 (281)
T 1mjf_A           82 IGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKI-DNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIA  158 (281)
T ss_dssp             EECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCT-TTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEE
T ss_pred             EcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhh-ccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEE
Confidence            999999999999998 667999999999999999999822 1122       368999999999999876 678999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |++++.  ++...+++.+|++. ++++|+|||+++++.++|  +...+.++.+.++++++|+++..|.
T Consensus       159 d~~~~~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~  221 (281)
T 1mjf_A          159 DSTDPV--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYS  221 (281)
T ss_dssp             ECCCCC-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCCCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCceEEEE
Confidence            999876  44467888999999 799999999999998776  5677889999999999999988765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=100.00  E-value=1.4e-37  Score=274.04  Aligned_cols=219  Identities=33%  Similarity=0.636  Sum_probs=188.5

Q ss_pred             cccceEEeeec-cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCe
Q 025534           27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (251)
Q Consensus        27 ~~~~w~~~~~~-~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~  105 (251)
                      ...+|++|..+ ++.+..+.+.++|++.+|+||+|.|++++.+|+.|++||.+|++.++++.|++++++++++.++++++
T Consensus        14 ~~~~w~~e~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~   93 (296)
T 1inl_A           14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK   93 (296)
T ss_dssp             CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCceEEEecCCCCceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCE
Confidence            66789999998 99999999999999999999999999999999999999999999999999999999988887888899


Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |||||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.+++++++++|+++++....++||+|++|+++
T Consensus        94 VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  173 (296)
T 1inl_A           94 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD  173 (296)
T ss_dssp             EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred             EEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCC
Confidence            99999999999999999865679999999999999999998531111346899999999999987666789999999987


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      ++. ++...+++.+|++. ++++|+|||+++++.++|  +...+.++.+.++++++|+++.+|.
T Consensus       174 ~~~-~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~  233 (296)
T 1inl_A          174 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYL  233 (296)
T ss_dssp             ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             ccc-CchhhhhHHHHHHH-HHHhcCCCcEEEEEccCc--ccCHHHHHHHHHHHHHHCCceEEEE
Confidence            732 45567889999999 799999999999998877  5677889999999999999998775

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=100.00  E-value=2e-37  Score=275.23  Aligned_cols=209  Identities=34%  Similarity=0.675  Sum_probs=176.4

Q ss_pred             eccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchH
Q 025534           36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS  115 (251)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~  115 (251)
                      ..++....+.+.++|++.+|+||+|.|++++.+|+.|++||.+|++.++++.|++++++++++.++++++||+||||+|.
T Consensus        42 ~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~  121 (314)
T 2b2c_A           42 AWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGG  121 (314)
T ss_dssp             CCTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSH
T ss_pred             cCCCceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCH
Confidence            56888899999999999999999999999999999999999999999999999999999888777888999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCC
Q 025534          116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL  195 (251)
Q Consensus       116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l  195 (251)
                      ++++++++.+..+|++||+|+.+++.|+++++.....+.+++++++.+|+++++....++||+|++|++++.  .|...+
T Consensus       122 ~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--~~~~~l  199 (314)
T 2b2c_A          122 ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESL  199 (314)
T ss_dssp             HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------
T ss_pred             HHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--Ccchhh
Confidence            999999986668999999999999999999864311134689999999999998766688999999998776  454678


Q ss_pred             ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       196 ~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      ++.+|++. ++++|+|||+++++.+++  +...+.++.+.++++++|+++..|.
T Consensus       200 ~t~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~vF~~v~~~~  250 (314)
T 2b2c_A          200 FGQSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQ  250 (314)
T ss_dssp             ----HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             hHHHHHHH-HHhhcCCCeEEEEECCCc--ccCHHHHHHHHHHHHHHCCcceEEE
Confidence            88999999 799999999999998777  6677889999999999999987764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=100.00  E-value=1e-36  Score=271.53  Aligned_cols=218  Identities=33%  Similarity=0.598  Sum_probs=193.1

Q ss_pred             cccceEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCC
Q 025534           27 RKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK  104 (251)
Q Consensus        27 ~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~  104 (251)
                      ....|++|..+  ++.+..+...++|++.+|+||+|.|++++.+|+.|++||.+|++.++++.|+|++++++++.+++++
T Consensus        39 ~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~  118 (321)
T 2pt6_A           39 FSKKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK  118 (321)
T ss_dssp             --CCEEEECCTTSTTCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCC
T ss_pred             ccceEEEEeccCCCCceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCC
Confidence            46789999998  8999999999999999999999999999989999999999999999999999999998887778889


Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +|||||||+|.++++++++.+..+|++||+|+++++.|+++++.....+.+++++++++|+++++...+++||+|++|++
T Consensus       119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~  198 (321)
T 2pt6_A          119 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS  198 (321)
T ss_dssp             EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC
T ss_pred             EEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCc
Confidence            99999999999999999986667999999999999999999864211234689999999999998766678999999998


Q ss_pred             CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      ++.  +|...+++.++++. ++++|+|||+++++..++  +...+.++.+.++++++|+++.+|.
T Consensus       199 ~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~  258 (321)
T 2pt6_A          199 DPI--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYAN  258 (321)
T ss_dssp             CSS--SGGGGGSSHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            776  55567888999999 799999999999998776  5677889999999999999998774

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=100.00  E-value=6e-36  Score=264.59  Aligned_cols=222  Identities=32%  Similarity=0.589  Sum_probs=188.3

Q ss_pred             CCCccccceEEeeec--cccceeeeeccEEEEeecCCCcEEEEEec---CceeEEEEcCccccccccchhHHHHHHHhHh
Q 025534           23 LTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTK---PFGKALVIDGKLQSAEVDEFIYHESLVHPAL   97 (251)
Q Consensus        23 ~~~~~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~v~~~~---~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~   97 (251)
                      ..+....+|+.|..+  ++....+...++|++.+|+||+|.|++++   .+|+.|++||.+|+++.+++.|++++.++++
T Consensus        11 ~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l   90 (304)
T 3bwc_A           11 GSELISGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSL   90 (304)
T ss_dssp             -CCCCTTSEEEECCSSSCSEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHH
T ss_pred             CCccccCceEEEeccCCCCceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhh
Confidence            345667889999988  89999999999999999999999999998   7899999999999999999999999999888


Q ss_pred             hcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCce
Q 025534           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY  176 (251)
Q Consensus        98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~f  176 (251)
                      +.++++++|||||||+|.++++++++.+..+|++||+|+.+++.|+++++.......+++++++.+|+.+++.. .+++|
T Consensus        91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f  170 (304)
T 3bwc_A           91 CSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY  170 (304)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred             hcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence            87788899999999999999999998666799999999999999999885211113568999999999999865 46789


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCceeeec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGYNLT  249 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~  249 (251)
                      |+|++|.+++.  .|...+++.+|++. ++++|+|||+++++..+|  +......+.+.++|+++ |+.+..|.
T Consensus       171 DvIi~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~GF~~v~~~~  239 (304)
T 3bwc_A          171 DVVIIDTTDPA--GPASKLFGEAFYKD-VLRILKPDGICCNQGESI--WLDLELIEKMSRFIRETGFASVQYAL  239 (304)
T ss_dssp             EEEEEECC-----------CCHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEEEECCCCcc--ccchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhCCCCcEEEEE
Confidence            99999998776  45567889999999 799999999999998776  56677889999999999 99887764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=100.00  E-value=1.6e-36  Score=263.00  Aligned_cols=200  Identities=16%  Similarity=0.232  Sum_probs=178.0

Q ss_pred             ceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEE
Q 025534           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (251)
Q Consensus        30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~i  109 (251)
                      +|++|..+++.+..+.+.++|++.+|+||+|.|++++.+|++|++||. |+++.+++.|++++.+++++.++++++||+|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~i   79 (262)
T 2cmg_A            1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_dssp             CEEEEEEETTEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEE
T ss_pred             CcEEEEcCCCceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEE
Confidence            599999999999999999999999999999999999999999999999 9999999999999999998888889999999


Q ss_pred             ecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025534          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (251)
Q Consensus       110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~  189 (251)
                      |||+|.++++++++ + .+|++||+|+++++.|+++++.....+.++|++++.+|+++++    ++||+|++|+++|.  
T Consensus        80 G~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~dp~--  151 (262)
T 2cmg_A           80 DGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEPDI--  151 (262)
T ss_dssp             SSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSCCCH--
T ss_pred             eCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCCChH--
Confidence            99999999999998 6 8999999999999999999864211134689999999999886    68999999975432  


Q ss_pred             CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       190 ~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                               .|++. ++++|+|||+++++.++|  +...+.++++.++++++|+++.+|..
T Consensus       152 ---------~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~  200 (262)
T 2cmg_A          152 ---------HRIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGGVFSVAMPFVA  200 (262)
T ss_dssp             ---------HHHHH-HHTTEEEEEEEEEEEECT--TTCHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ---------HHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHhCCceEEEEE
Confidence                     38999 799999999999998776  45667889999999999999987753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=100.00  E-value=2e-35  Score=264.40  Aligned_cols=217  Identities=35%  Similarity=0.655  Sum_probs=188.9

Q ss_pred             ccccceEEeee--ccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCC
Q 025534           26 YRKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP  103 (251)
Q Consensus        26 ~~~~~w~~~~~--~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~  103 (251)
                      ....+|+.|..  .++.+..+.+.++|++.+|+||+|.|+++..+|+.|++||.+|+++++++.|++++++++++.++++
T Consensus        42 ~~~~~w~~e~~~~~~~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~  121 (334)
T 1xj5_A           42 TVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP  121 (334)
T ss_dssp             CCCSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCC
T ss_pred             ccccceEEEeccCCCCceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCC
Confidence            44678999885  4789999999999999999999999999999999999999999999999999999999988877888


Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEc
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD  182 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D  182 (251)
                      ++|||||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.+++++++++|+.+++... .++||+|++|
T Consensus       122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d  201 (334)
T 1xj5_A          122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD  201 (334)
T ss_dssp             CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred             CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence            999999999999999999986667999999999999999999864211134689999999999998653 4789999999


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      +++|.  .+...+++.+|++. ++++|+|||+++++.+++  +.....+..+.++++++|+.+..
T Consensus       202 ~~~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~  261 (334)
T 1xj5_A          202 SSDPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVN  261 (334)
T ss_dssp             CCCTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCCcc--CcchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--cccHHHHHHHHHHHHHhCccccc
Confidence            98776  34456778999999 799999999999998776  66777788899999999995443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.97  E-value=2.7e-31  Score=235.17  Aligned_cols=185  Identities=24%  Similarity=0.304  Sum_probs=156.3

Q ss_pred             cCCCcEEEEEecC--ceeEEEEcCcccccc------ccchhHHHHHHHhHhh---cCCCCC--eEEEEecCchHHHHHHH
Q 025534           55 TRYQDIALLDTKP--FGKALVIDGKLQSAE------VDEFIYHESLVHPALL---HHPNPK--TIFIMGGGEGSTAREIL  121 (251)
Q Consensus        55 s~~~~i~v~~~~~--~g~~l~ldg~~q~~~------~~~~~y~e~l~~~~~~---~~~~~~--~VL~iG~G~G~~~~~l~  121 (251)
                      ..|...+|.....  +|++|++||..|++.      .+++.|+|+|++.+++   .+++++  +||+||||+|.++++++
T Consensus        29 ~~~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la  108 (317)
T 3gjy_A           29 GEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFA  108 (317)
T ss_dssp             CSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHH
T ss_pred             ceeeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHH
Confidence            3455577877653  799999999999974      5789999999998886   467766  99999999999999999


Q ss_pred             hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHH
Q 025534          122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSF  200 (251)
Q Consensus       122 ~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef  200 (251)
                      ++.+..+|++||+|+++++.||++|+..    .++|++++++|+++++... +++||+|++|.+++.  .+..+|++.+|
T Consensus       109 ~~~p~~~v~~VEidp~vi~~Ar~~~~~~----~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~--~~~~~L~t~ef  182 (317)
T 3gjy_A          109 DVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA--ITPQNFTTVEF  182 (317)
T ss_dssp             HHSTTCEEEEEESCHHHHHHHHHHSCCC----CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS--CCCGGGSBHHH
T ss_pred             HHCCCcEEEEEECCHHHHHHHHHhcccc----CCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc--ccchhhhHHHH
Confidence            9433459999999999999999999764    3689999999999999754 578999999998776  33468999999


Q ss_pred             HHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       201 ~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |+. ++++|+|||++++|..++   .....++.++++|+++|+++..|.
T Consensus       183 l~~-~~r~LkpgGvlv~~~~~~---~~~~~~~~~~~tL~~vF~~v~~~~  227 (317)
T 3gjy_A          183 FEH-CHRGLAPGGLYVANCGDH---SDLRGAKSELAGMMEVFEHVAVIA  227 (317)
T ss_dssp             HHH-HHHHEEEEEEEEEEEEEC---TTCHHHHHHHHHHHHHCSEEEEEE
T ss_pred             HHH-HHHhcCCCcEEEEEecCC---cchHHHHHHHHHHHHHCCceEEEE
Confidence            999 799999999999998643   234678899999999999998874

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.66  E-value=1.6e-15  Score=123.66  Aligned_cols=109  Identities=10%  Similarity=0.093  Sum_probs=87.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. +..+|++||+|+.+++.|++++..++    .++++++++|+.++.... .++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccHHHHHhhccCCCccEE
Confidence            46789999999999999988875 45689999999999999999987653    268999999999987543 5789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcc--cCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKP--RLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~--~L~pgG~l~~~~~  220 (251)
                      ++|++...  ..   -...++++. +.+  +|+|||++++...
T Consensus       118 ~~~~p~~~--~~---~~~~~~l~~-~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          118 LADPPYNV--DS---ADVDAILAA-LGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EECCCTTS--CH---HHHHHHHHH-HHHSSSCCTTCEEEEEEE
T ss_pred             EECCCCCc--ch---hhHHHHHHH-HHhcCccCCCeEEEEEec
Confidence            99976432  10   113467777 677  9999999998763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.63  E-value=8e-16  Score=130.51  Aligned_cols=110  Identities=9%  Similarity=0.067  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      .+++.||||||||+|.++..++++.+ .++++||+||.+++.|++++...     ..+++++.+|+.+.+.. ..++||.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~FD~  131 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC-----CCceEEEeehHHhhcccccccCCce
Confidence            35778999999999999999988754 68999999999999999987643     36899999999887754 3578999


Q ss_pred             EEEcCCCCCCCCcccCCc-cHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~-~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+.|.....  ....+.. ...++++ ++++|||||+|++.
T Consensus       132 i~~D~~~~~--~~~~~~~~~~~~~~e-~~rvLkPGG~l~f~  169 (236)
T 3orh_A          132 ILYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             EEECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             EEEeeeecc--cchhhhcchhhhhhh-hhheeCCCCEEEEE
Confidence            999976322  1112222 3467888 79999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.60  E-value=1.4e-14  Score=121.63  Aligned_cols=129  Identities=15%  Similarity=0.217  Sum_probs=99.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      +..+|||||||+|.++..+++..+..+|++||+++.+++.|+++....+    .++++++.+|+.+++..  .+++||.|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~----l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG----LSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT----CSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHcCCCChheE
Confidence            5678999999999999999886555789999999999999999876442    35799999999998653  46799999


Q ss_pred             EEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++..++|+....  ...+...++++. +.++|||||++.+.+.      .......+...+.+.
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~-~~r~LkpGG~l~i~td------~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAEL-VKSKLQLGGVFHMATD------WEPYAEHMLEVMSSI  166 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHTS
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHhC
Confidence            998777663211  123455689999 7999999999998753      234555666666543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=4.8e-15  Score=127.53  Aligned_cols=132  Identities=14%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc---ccCCCCCCCeEEEEcchHHHHh------c
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAFSDPRLELVINDARAELE------S  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~---~~~~~~~~rv~~~~~D~~~~l~------~  171 (251)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++..   ++   ...+++++.+|+.++..      .
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA---FSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT---TGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC---CcceEEEEeCCHHHHhhhhhhhcc
Confidence            456799999999999999998875557999999999999999999875   42   23479999999988743      1


Q ss_pred             CCCceeEEEEcCCCCCCCC---c------c---cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          172 RKESYDVIIGDLADPIEGG---P------C---YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~---p------~---~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      ..++||+|++|++.....+   +      +   ......++++. +.++|+|||.+++...       .+.+..+.+.++
T Consensus       112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-------~~~~~~~~~~l~  183 (260)
T 2ozv_A          112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT-ASAIMVSGGQLSLISR-------PQSVAEIIAACG  183 (260)
T ss_dssp             CTTCEEEEEECCCC---------------------CCHHHHHHH-HHHHEEEEEEEEEEEC-------GGGHHHHHHHHT
T ss_pred             CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH-HHHHcCCCCEEEEEEc-------HHHHHHHHHHHH
Confidence            2478999999976422100   0      0   01123578888 7999999999987542       224556777777


Q ss_pred             hhCC
Q 025534          240 QVFK  243 (251)
Q Consensus       240 ~~F~  243 (251)
                      +.|.
T Consensus       184 ~~~~  187 (260)
T 2ozv_A          184 SRFG  187 (260)
T ss_dssp             TTEE
T ss_pred             hcCC
Confidence            6554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.58  E-value=9.1e-15  Score=123.42  Aligned_cols=104  Identities=22%  Similarity=0.394  Sum_probs=86.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii  180 (251)
                      ++++|||||||+|..+..+++..+..+|++||+++.+++.|++++...+   ..++++++.+|+.+++. ...++||+|+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~V~  147 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH---FENQVRIIEGNALEQFENVNDKVYDMIF  147 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhhccCCccEEE
Confidence            5789999999999999999985445799999999999999999987543   23589999999998776 5567899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|....         ...++++. +.+.|+|||++++.
T Consensus       148 ~~~~~~---------~~~~~l~~-~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          148 IDAAKA---------QSKKFFEI-YTPLLKHQGLVITD  175 (232)
T ss_dssp             EETTSS---------SHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EcCcHH---------HHHHHHHH-HHHhcCCCeEEEEe
Confidence            996421         13578898 79999999999883

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.58  E-value=8e-15  Score=123.33  Aligned_cols=103  Identities=16%  Similarity=0.223  Sum_probs=85.1

Q ss_pred             CeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025534          104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~  181 (251)
                      .+|||||||+|..+..+++. ++..+|++||+|+++++.|++++...+  +.+++++++.+|+.+++... +++||+|++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            39999999999999999885 435799999999999999999987543  12268999999999998764 579999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |....         ...++++. +.++|+|||++++.
T Consensus       136 d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          136 QVSPM---------DLKALVDA-AWPLLRRGGALVLA  162 (221)
T ss_dssp             CCCTT---------THHHHHHH-HHHHEEEEEEEEET
T ss_pred             cCcHH---------HHHHHHHH-HHHHcCCCcEEEEe
Confidence            96421         12468898 69999999999984

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=2.6e-14  Score=121.96  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=86.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC--CceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~--~~fD~  178 (251)
                      ++++|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...+   ..++++++.+|+.+++....  ++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG---VDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            578999999999999999998633 5799999999999999999986543   24689999999999886543  48999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++|...+         ....+++. +.+.|+|||++++..
T Consensus       140 V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          140 IFIDADKP---------NNPHYLRW-ALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEEC
T ss_pred             EEECCchH---------HHHHHHHH-HHHhcCCCeEEEEeC
Confidence            99986421         12468898 799999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=5.7e-14  Score=116.73  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=98.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++..+..++++||+++.+++.|++++...+    -++++++.+|+.++.. ...++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            35678999999999999999887555799999999999999999876542    2689999999987432 234689999


Q ss_pred             EEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++.++|+....  ...+...++++. +.++|+|||++++.+.      .......+.+.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~~~~~  172 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY  172 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             EEECCCCccccchhhhccCCHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHHC
Confidence            999887652110  012345789999 7999999999998753      233455666666554

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.55  E-value=2.1e-14  Score=118.77  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++..++    .++++++.+|+.+++....++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            46799999999999999877753 4699999999999999999987553    268999999999988655678999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHc--ccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~--~~L~pgG~l~~~~~  220 (251)
                      |++...  .     ...++++. +.  ++|+|||++++...
T Consensus       129 ~~p~~~--~-----~~~~~l~~-l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFRR--G-----LLEETINL-LEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSST--T-----THHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             CCCCCC--C-----cHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence            976321  1     12456666 54  46999999988764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.55  E-value=2.5e-14  Score=122.56  Aligned_cols=127  Identities=15%  Similarity=0.172  Sum_probs=92.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii  180 (251)
                      ++.+|||+|||+|.++..+++..+ .+|++||+++.+++.|++++..++   ...+++++.+|+.++.... .++||+|+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~---~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ---LEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT---CTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC---CcccEEEEECcHHHhhhhhccCCccEEE
Confidence            578999999999999999998754 499999999999999999987653   2358999999999886432 57899999


Q ss_pred             EcCCCCCC-----CCcc--cC-------CccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          181 GDLADPIE-----GGPC--YK-------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       181 ~D~~~~~~-----~~p~--~~-------l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      +|++....     ..+.  ..       ....++++. +.+.|+|||++++-.. +      ..+..+...+++
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-~------~~~~~~~~~l~~  190 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRV-AASLLKQGGKANFVHR-P------ERLLDIIDIMRK  190 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHH-HHHHEEEEEEEEEEEC-T------TTHHHHHHHHHH
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHH-HHHHccCCcEEEEEEc-H------HHHHHHHHHHHH
Confidence            99873211     0000  00       112468888 7999999999998432 1      224455566654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.55  E-value=1.8e-14  Score=119.05  Aligned_cols=109  Identities=18%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCc-eeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES-YDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~-fD~I  179 (251)
                      ++.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++..++  +..++++++.+|+.+++.. .+++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHhhccCCCCCEE
Confidence            46799999999999999877753 4699999999999999999987543  1125899999999998654 2468 9999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEecCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~~~  221 (251)
                      ++|++...  .     ...++++. +  .++|+|||++++...+
T Consensus       130 ~~~~~~~~--~-----~~~~~l~~-~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          130 FLDPPFHF--N-----LAEQAISL-LCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EECCCSSS--C-----HHHHHHHH-HHHTTCEEEEEEEEEEEES
T ss_pred             EECCCCCC--c-----cHHHHHHH-HHhcCccCCCcEEEEEECC
Confidence            99976221  1     12466777 6  5789999999887644

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.55  E-value=5e-14  Score=117.75  Aligned_cols=107  Identities=12%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-----Cc
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----ES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-----~~  175 (251)
                      ++++|||||||+|..+..+++. ++..+|++||+++.+++.|++++...+   ..++++++.+|+.+++....     ++
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            5789999999999999999985 335799999999999999999987543   23579999999999876543     68


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+|++|...+.      .....++++. + ++|+|||++++..
T Consensus       135 fD~V~~d~~~~~------~~~~~~~~~~-~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          135 LDMVFLDHWKDR------YLPDTLLLEK-C-GLLRKGTVLLADN  170 (221)
T ss_dssp             CSEEEECSCGGG------HHHHHHHHHH-T-TCCCTTCEEEESC
T ss_pred             eEEEEEcCCccc------chHHHHHHHh-c-cccCCCeEEEEeC
Confidence            999999964221      1112356776 5 9999999999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.55  E-value=9.5e-14  Score=115.80  Aligned_cols=130  Identities=10%  Similarity=0.114  Sum_probs=97.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  179 (251)
                      .+..+|||||||+|.++..+++..+..++++||+++.+++.|+++....+    .++++++.+|+.++.. -..+.||.|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            35678999999999999999886555799999999999999999876442    3579999999988532 235689999


Q ss_pred             EEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++.++|+....  ...+...++++. +.++|+|||.+++.+.      .......+.+.+.+.
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~-~~~~LkpgG~l~~~td------~~~~~~~~~~~~~~~  169 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY  169 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             EEECCCCCcCccccccccCcHHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence            998777653111  123456789999 7999999999998752      234455555555553

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.55  E-value=1.5e-14  Score=116.26  Aligned_cols=109  Identities=14%  Similarity=0.198  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+   ..++++++.+|+.+++....++||+|+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcHHHhHHhhcCCCCEEE
Confidence            45689999999999999999887 44699999999999999999886542   235799999999998765557899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHc--ccCCCCcEEEEecCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAGP  221 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~--~~L~pgG~l~~~~~~  221 (251)
                      +|++...       ....++++. +.  ++|+|||++++....
T Consensus       106 ~~~~~~~-------~~~~~~~~~-l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          106 LDPPYAK-------ETIVATIEA-LAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             ECCSSHH-------HHHHHHHHH-HHHTTCEEEEEEEEEEEET
T ss_pred             ECCCCCc-------chHHHHHHH-HHhCCCcCCCcEEEEEECC
Confidence            9965211       112466777 55  899999999987644

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.54  E-value=2.8e-14  Score=118.17  Aligned_cols=103  Identities=21%  Similarity=0.306  Sum_probs=84.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++++|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...+   ..++++++.+|+.+++...++ ||+|+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~-fD~v~  131 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG---LIDRVELQVGDPLGIAAGQRD-IDILF  131 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS---GGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCceEEEEEecHHHHhccCCC-CCEEE
Confidence            568999999999999999988633 5799999999999999999886432   235899999999998765556 99999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|...         .....+++. +.++|+|||++++.
T Consensus       132 ~~~~~---------~~~~~~l~~-~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDV---------FNGADVLER-MNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTT---------SCHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EcCCh---------hhhHHHHHH-HHHhcCCCeEEEEE
Confidence            99531         123578998 79999999999884

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.54  E-value=3.2e-14  Score=118.64  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC----CCc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~----~~~  175 (251)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+...    .++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN---LNDRVEVRTGLALDSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            3578999999999999999998643 4799999999999999999987543   2467999999999876532    257


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+|++|...+         ...++++. +.+.|+|||++++..
T Consensus       134 fD~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          134 FDFIFIDADKQ---------NNPAYFEW-ALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CSEEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEES
T ss_pred             cCEEEEcCCcH---------HHHHHHHH-HHHhcCCCcEEEEeC
Confidence            99999996521         12578898 799999999998753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.54  E-value=2.6e-14  Score=122.15  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------C
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~  173 (251)
                      .++++|||||||+|..+..+++. ++..+|+++|+|+++++.|++++...+   ..++++++.+|+.+++...      .
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHHHHHHhccCCC
Confidence            46789999999999999999886 325799999999999999999987543   2468999999999887542      5


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++||+|++|....         ....+++. +.++|+|||++++.
T Consensus       155 ~~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  189 (247)
T 1sui_A          155 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD  189 (247)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred             CCEEEEEEcCchH---------HHHHHHHH-HHHhCCCCeEEEEe
Confidence            7899999996421         13578898 79999999999874

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.54  E-value=1.6e-13  Score=110.74  Aligned_cols=128  Identities=17%  Similarity=0.228  Sum_probs=96.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++.  ..+++++|+++.+++.+++++...+  ..+++++++.+|+.+.+.  .++||+|+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~D~v~  124 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKII  124 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECchhcccc--cCCceEEE
Confidence            46689999999999999999887  3699999999999999999886542  122259999999887543  56899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      ++++.+.  ..   -...++++. +.++|+|||.+++....      ......+.+.|++.|..+.
T Consensus       125 ~~~~~~~--~~---~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~~~~~~  178 (194)
T 1dus_A          125 TNPPIRA--GK---EVLHRIIEE-GKELLKDNGEIWVVIQT------KQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ECCCSTT--CH---HHHHHHHHH-HHHHEEEEEEEEEEEES------THHHHHHHHHHHHHHSCCE
T ss_pred             ECCCccc--ch---hHHHHHHHH-HHHHcCCCCEEEEEECC------CCChHHHHHHHHHHhcceE
Confidence            9875332  11   123578888 79999999999987632      2334456677777776554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.54  E-value=3e-14  Score=122.88  Aligned_cols=108  Identities=16%  Similarity=0.262  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcC--CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      .+++.+|||||||+|..+..+++..  +..+|++||+++.|++.|++++...+   ...+++++++|+.++   ..++||
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~~~---~~~~~d  141 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI---AIENAS  141 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTTTC---CCCSEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccccc---cccccc
Confidence            4567899999999999999998752  34589999999999999999876432   346899999998764   236799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|++...-++. .+   .....++++ +++.|||||++++.
T Consensus       142 ~v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpGG~lii~  177 (261)
T 4gek_A          142 MVVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS  177 (261)
T ss_dssp             EEEEESCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cceeeeeeeec-Cc---hhHhHHHHH-HHHHcCCCcEEEEE
Confidence            99987643321 11   112357898 79999999999874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.54  E-value=2.6e-14  Score=115.37  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++   ..++++++.+|+.+++..   ..++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhC---CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            35689999999999999988885 44699999999999999999887542   235899999999987642   257899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEecCC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAGP  221 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~~~  221 (251)
                      +|++|++...       ....+.++. +  .++|+|||++++....
T Consensus       119 ~i~~~~~~~~-------~~~~~~~~~-l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYAK-------QEIVSQLEK-MLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGGG-------CCHHHHHHH-HHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCc-------hhHHHHHHH-HHHhcccCCCCEEEEEeCC
Confidence            9999976211       112455665 6  7899999999987643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.53  E-value=1.7e-13  Score=109.70  Aligned_cols=120  Identities=24%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++...+   ...++ ++.+|+.+.+....++||+|+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~D~i~   99 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG---VSDRI-AVQQGAPRAFDDVPDNPDVIF   99 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT---CTTSE-EEECCTTGGGGGCCSCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC---CCCCE-EEecchHhhhhccCCCCCEEE
Confidence            45679999999999999999887555799999999999999999876542   22478 888998776655447899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++...+.          .++++. +.+.|+|||.+++....      .+....+.+.+++.
T Consensus       100 ~~~~~~~----------~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~  143 (178)
T 3hm2_A          100 IGGGLTA----------PGVFAA-AWKRLPVGGRLVANAVT------VESEQMLWALRKQF  143 (178)
T ss_dssp             ECC-TTC----------TTHHHH-HHHTCCTTCEEEEEECS------HHHHHHHHHHHHHH
T ss_pred             ECCcccH----------HHHHHH-HHHhcCCCCEEEEEeec------cccHHHHHHHHHHc
Confidence            8754321          467888 79999999999987532      23344455555544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.53  E-value=1.2e-13  Score=111.71  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|..+..+++.  ..+|++||+|+.+++.|++++...+    -++++++.+|........+++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG----IENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT----CCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            45689999999999999999987  3699999999999999999887543    26899999887664323357899999


Q ss_pred             EcCC-CCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++. .+......  ..-....+++. +.++|||||++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEK-ILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHH-HHHhcCCCcEEEEEE
Confidence            9842 22100000  00112367788 789999999988765

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.53  E-value=2.7e-14  Score=121.11  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=86.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------C
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~  173 (251)
                      .++++||+||||+|..+..+++. ++..+|+++|+|+++++.|++++...+   ..++++++.+|+.+++...      .
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG---VEHKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhccCCC
Confidence            46789999999999999999886 335799999999999999999987543   2468999999999887542      4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++||+|++|....         ...++++. +.++|+|||++++..
T Consensus       146 ~~fD~I~~d~~~~---------~~~~~l~~-~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          146 GSYDFGFVDADKP---------NYIKYHER-LMKLVKVGGIVAYDN  181 (237)
T ss_dssp             TCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             CCcCEEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEec
Confidence            7899999995321         13578998 799999999998853

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.52  E-value=3.4e-14  Score=118.56  Aligned_cols=105  Identities=21%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-----Cc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----ES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-----~~  175 (251)
                      ++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++....     ++
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG---LSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            568999999999999999998632 5799999999999999999986543   24679999999988875422     78


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+|++|....         ...++++. +.++|+|||++++..
T Consensus       141 fD~v~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          141 YDLIYIDADKA---------NTDLYYEE-SLKLLREGGLIAVDN  174 (225)
T ss_dssp             EEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEeC
Confidence            99999986421         13468888 799999999998753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.52  E-value=2.2e-14  Score=117.96  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++..++    . +++++.+|+.+.+..   ..++||
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----A-VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----C-ceEEEEcchHhhhhhhhhccCccc
Confidence            56789999999999999999987545699999999999999999876542    1 789999999987653   237899


Q ss_pred             EEEEcCCCCCCCC------------cccCCc--------cHHHHHHHHcccCCCCcE-EEEecCCCCCCCChHHHHHHHH
Q 025534          178 VIIGDLADPIEGG------------PCYKLY--------TKSFYEFVVKPRLNPEGI-FVTQAGPAGIFSHTEVFSCIYN  236 (251)
Q Consensus       178 ~Ii~D~~~~~~~~------------p~~~l~--------~~ef~~~~~~~~L~pgG~-l~~~~~~p~~~~~~~~~~~i~~  236 (251)
                      +|++|++......            |...+.        -.++++. ++++|+|||+ +++...    ....+.+..++.
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~  178 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL-PPYVLARGRAGVFLEVG----HNQADEVARLFA  178 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTC-CGGGBCSSSEEEEEECT----TSCHHHHHHHTG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH-HHHHhcCCCeEEEEEEC----CccHHHHHHHHH
Confidence            9999987322100            000000        0567787 6899999999 666543    233444444444


Q ss_pred             HHHhhCCc
Q 025534          237 TLRQVFKC  244 (251)
Q Consensus       237 ~l~~~F~~  244 (251)
                      .++.-|..
T Consensus       179 ~~~~gf~~  186 (215)
T 4dzr_A          179 PWRERGFR  186 (215)
T ss_dssp             GGGGGTEE
T ss_pred             HhhcCCce
Confidence            22333543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.52  E-value=1.9e-13  Score=112.57  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+    .++++++.+|+.+.+.. .++||+|+
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~i~  113 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV----ARNVTLVEAFAPEGLDD-LPDPDRVF  113 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT----CTTEEEEECCTTTTCTT-SCCCSEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeCChhhhhhc-CCCCCEEE
Confidence            45689999999999999999987656799999999999999999887543    26899999998776543 26799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++...+         ...++++. +.+.|+|||++++...      ..+....+.+.+++.
T Consensus       114 ~~~~~~---------~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          114 IGGSGG---------MLEEIIDA-VDRRLKSEGVIVLNAV------TLDTLTKAVEFLEDH  158 (204)
T ss_dssp             ESCCTT---------CHHHHHHH-HHHHCCTTCEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred             ECCCCc---------CHHHHHHH-HHHhcCCCeEEEEEec------ccccHHHHHHHHHHC
Confidence            986532         23478898 7999999999998652      234455666666654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=3e-14  Score=122.61  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+...+|||||||+|.++..++++.  .+|++||+|+.|++.|++          .++++++++|+.+. .-.+++||+|
T Consensus        37 ~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~-~~~~~sfD~v  103 (257)
T 4hg2_A           37 APARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT-GLPPASVDVA  103 (257)
T ss_dssp             SSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC-CCCSSCEEEE
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh-cccCCcccEE
Confidence            3566899999999999999999864  589999999999987764          36899999998764 3346899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-++.       ....++++ ++++|||||+|++..
T Consensus       104 ~~~~~~h~~-------~~~~~~~e-~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          104 IAAQAMHWF-------DLDRFWAE-LRRVARPGAVFAAVT  135 (257)
T ss_dssp             EECSCCTTC-------CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEeeehhHh-------hHHHHHHH-HHHHcCCCCEEEEEE
Confidence            997654442       23578999 799999999998765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.52  E-value=6.8e-14  Score=111.21  Aligned_cols=104  Identities=14%  Similarity=0.100  Sum_probs=83.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~  178 (251)
                      ++.+|||+|||+|.++..+++..  .+|+++|+|+.+++.|++++..++    . +++++.+|+.+++...   .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~----~-~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG----L-GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT----C-CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcC----C-ceEEEeccHHHHHHhhhccCCceEE
Confidence            66899999999999999999874  349999999999999999887553    1 7999999999876432   348999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHc--ccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~--~~L~pgG~l~~~~~~  221 (251)
                      |+++++.. . .      ..++++. +.  ++|+|||++++...+
T Consensus       114 i~~~~~~~-~-~------~~~~~~~-~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          114 AFMAPPYA-M-D------LAALFGE-LLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEECCCTT-S-C------TTHHHHH-HHHHTCEEEEEEEEEEEET
T ss_pred             EEECCCCc-h-h------HHHHHHH-HHhhcccCCCcEEEEEeCC
Confidence            99997532 1 1      2366777 67  999999999987643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.51  E-value=8e-14  Score=116.65  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+||| +|.++..+++.. ..+|+++|+|+.+++.|++++..++     .+++++.+|+..+....+++||+|
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-----SNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEeCCchhhhhcccCceeEE
Confidence            467899999999 999999998864 3699999999999999999987653     279999999754322234789999


Q ss_pred             EEcCCCCCCCC-----cc--------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGG-----PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~-----p~--------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++|++......     +.        ......++++. +.+.|+|||.+++...     ........+.+.+++.
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~l~~~  196 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE-AFDHLNPGGKVALYLP-----DKEKLLNVIKERGIKL  196 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHH-HGGGEEEEEEEEEEEE-----SCHHHHHHHHHHHHHT
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHH-HHHHhCCCeEEEEEec-----ccHhHHHHHHHHHHHc
Confidence            99987322100     00        00112678998 7999999999988642     2234566777777765

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.51  E-value=9.8e-15  Score=124.38  Aligned_cols=104  Identities=21%  Similarity=0.355  Sum_probs=85.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CCc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~~  175 (251)
                      ++++|||||||+|..+..+++.. +..+|++||+++++++.|++++...+   ..++++++.+|+.+++...     .++
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK---QEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT---CTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            57899999999999999998853 35799999999999999999987543   2468999999999987643     478


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ||+|++|....         ...++++. +.+.|+|||++++.
T Consensus       137 fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          137 FDFIFIDADKT---------NYLNYYEL-ALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEEEEESCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EeEEEEcCChH---------HhHHHHHH-HHHhcCCCeEEEEE
Confidence            99999996411         13468888 79999999999884

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.51  E-value=1.9e-13  Score=116.21  Aligned_cols=124  Identities=21%  Similarity=0.266  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++...+   ...+++++.+|+.+.+  ..++||+|
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~v  166 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG---FDDRVTIKLKDIYEGI--EEENVDHV  166 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT---CTTTEEEECSCGGGCC--CCCSEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC---CCCceEEEECchhhcc--CCCCcCEE
Confidence            45689999999999999999987 545799999999999999999986543   2356999999998764  34679999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh---CCceee
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV---FKCGYN  247 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~---F~~v~~  247 (251)
                      ++|+++++           ++++. +.+.|+|||.+++...      ..+....+.+.+++.   |..+..
T Consensus       167 ~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          167 ILDLPQPE-----------RVVEH-AAKALKPGGFFVAYTP------CSNQVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             EECSSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred             EECCCCHH-----------HHHHH-HHHHcCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCccccEE
Confidence            99876432           45777 6899999999998652      234556667777665   655543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.51  E-value=8.8e-14  Score=121.71  Aligned_cols=103  Identities=10%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             cCCCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534           99 HHPNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ...++.+||+||||+|.++ ..+++.+ ..+|++||+|+++++.|++++...+   . .+++++.+|+.++ .  +++||
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~g---l-~~v~~v~gDa~~l-~--d~~FD  190 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLG---V-DGVNVITGDETVI-D--GLEFD  190 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHT---C-CSEEEEESCGGGG-G--GCCCS
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcC---C-CCeEEEECchhhC-C--CCCcC
Confidence            3456899999999988765 4455544 4799999999999999999987543   2 6899999999885 2  57899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+++...+   .      ..++++. +.++|||||++++..
T Consensus       191 vV~~~a~~~---d------~~~~l~e-l~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          191 VLMVAALAE---P------KRRVFRN-IHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEEECTTCS---C------HHHHHHH-HHHHCCTTCEEEEEE
T ss_pred             EEEECCCcc---C------HHHHHHH-HHHHcCCCcEEEEEc
Confidence            999975411   1      2478998 799999999999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.51  E-value=1.3e-13  Score=125.15  Aligned_cols=130  Identities=12%  Similarity=0.105  Sum_probs=93.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++++|||+|||+|.++..+++. +..+|++||+++.+++.|++++..++  +.+.+++++.+|+.+++..   .+++||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            45689999999999999999985 45699999999999999999988764  1222899999999998754   246899


Q ss_pred             EEEEcCCCCCCC-CcccCC--ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025534          178 VIIGDLADPIEG-GPCYKL--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (251)
Q Consensus       178 ~Ii~D~~~~~~~-~p~~~l--~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~  236 (251)
                      +|++|+|..... ......  .-.++++. +.+.|+|||++++.+.++.  ...+.+..++.
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~-~~~~L~pgG~l~~~~~~~~--~~~~~~~~~i~  346 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAAN--MTVSQFKKQIE  346 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHH
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCCc--CCHHHHHHHHH
Confidence            999998752100 000001  01245566 5799999999998887652  33444444443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=117.06  Aligned_cols=133  Identities=12%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--CCCCCCCeEEEEcchHHHHh--cCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELE--SRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~~rv~~~~~D~~~~l~--~~~~~f  176 (251)
                      .+..+|||||||+|.++..+++..+...|++||+++.+++.|++++....  .....++++++.+|+.+++.  -..++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34568999999999999999887555799999999999999998754210  00123689999999987554  235789


Q ss_pred             eEEEEcCCCCCCCC--cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          177 DVIIGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       177 D~Ii~D~~~~~~~~--p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      |.|++..++|+...  ....+....+++. +.++|+|||.+++.+.      .......+.+.|.+
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~-~~~~LkpGG~l~~~td------~~~~~~~~~~~l~~  183 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAE-YAYVLRVGGLVYTITD------VLELHDWMCTHFEE  183 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHH-HHHHCCCCCEEEEEeC------CHHHHHHHHHHHHH
Confidence            99999877765211  0123445689999 7999999999998753      23444555555554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.50  E-value=1.5e-14  Score=125.58  Aligned_cols=125  Identities=16%  Similarity=0.080  Sum_probs=95.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++... .+|+++|+|+.+++.|++++..++   ..++++++.+|+.++..  .++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~---~~~~v~~~~~D~~~~~~--~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECCHHHhcc--cCCccEEE
Confidence            4578999999999999999998743 389999999999999999988664   23579999999988764  57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      +|++..          ..++++. +.++|+|||++++...++......+.+..+.+.+++..
T Consensus       198 ~~~p~~----------~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G  248 (278)
T 2frn_A          198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYG  248 (278)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTT
T ss_pred             ECCchh----------HHHHHHH-HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcC
Confidence            997621          1356777 68999999999987644311122334556666666543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.50  E-value=8.3e-14  Score=117.43  Aligned_cols=109  Identities=9%  Similarity=0.080  Sum_probs=82.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++.. ..+|++||+++.+++.|+++....     .++++++.+|+.+.+.. .+++||+|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc-----CCCeEEEecCHHHhhcccCCCceEEE
Confidence            456799999999999999997754 358999999999999999987643     26899999999987533 35789999


Q ss_pred             EEcCCCCCCCCcccCCc-cHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~-~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++|.+...  .+..+.. ...+++. ++++|||||++++.
T Consensus       133 ~~d~~~~~--~~~~~~~~~~~~l~~-~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          133 LYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             EECCcccc--hhhhhhhhHHHHHHH-HHHhcCCCeEEEEE
Confidence            99644211  1111111 1256888 79999999999863

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.50  E-value=1.8e-13  Score=115.87  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=91.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      ++.+|||||||+|..+..++...+..+|++||+++.+++.|++++...+    -++++++++|+.++...  ..++||+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEeccHHHhcccccccCCccEE
Confidence            5689999999999999888864345799999999999999999876542    24699999999886421  24789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +++...    .      ...+++. +.++|+|||.+++..+..    ..+.+..+.+.++..
T Consensus       146 ~~~~~~----~------~~~~l~~-~~~~LkpgG~l~~~~g~~----~~~~~~~~~~~l~~~  192 (240)
T 1xdz_A          146 TARAVA----R------LSVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTL  192 (240)
T ss_dssp             EEECCS----C------HHHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHT
T ss_pred             EEeccC----C------HHHHHHH-HHHhcCCCCEEEEEeCCC----chHHHHHHHHHHHHc
Confidence            998631    1      2478888 799999999998875432    234455566666543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.49  E-value=1.7e-13  Score=122.17  Aligned_cols=129  Identities=12%  Similarity=0.176  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD  177 (251)
                      .++.+|||+|||+|.++..+++. +. +|++||+|+.+++.|++++..++  +.+.+++++++|+++++...   .++||
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~-ga-~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD  227 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA-GA-EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYD  227 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             CCCCcEEEcccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCce
Confidence            35679999999999999999985 43 99999999999999999987664  22236999999999987532   56899


Q ss_pred             EEEEcCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025534          178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~  236 (251)
                      +|++|+|.... .+...++     ..++++. +.++|+|||++++...... ....+.+..+++
T Consensus       228 ~Ii~dPP~~~~-~~~~~~~~~~~~~~~ll~~-~~~~LkpgG~lli~~~~~~-~~~~~~~~~~l~  288 (332)
T 2igt_A          228 IILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI-RASFYSMHELMR  288 (332)
T ss_dssp             EEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT-TSCHHHHHHHHH
T ss_pred             EEEECCccccC-CchHHHHHHHHHHHHHHHH-HHHhcCcCcEEEEEECCCC-CCCHHHHHHHHH
Confidence            99999873110 1111111     2467887 6899999999665543221 223444554444

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.49  E-value=5.9e-13  Score=115.00  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=87.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++    .++++++.+|+.+.+.  .++||+|+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Iv  181 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA----IKNIHILQSDWFSALA--GQQFAMIV  181 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCSTTGGGT--TCCEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEcchhhhcc--cCCccEEE
Confidence            35679999999999999999876455799999999999999999987543    2479999999987643  46899999


Q ss_pred             EcCCCCCC-----------CCcccCC--------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIE-----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~-----------~~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++++....           ..|...+        ....+++. +.+.|+|||.+++..+
T Consensus       182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~-~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRNALVSGGFLLLEHG  239 (276)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGGGEEEEEEEEEECC
T ss_pred             ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            99874221           0121122        12567888 7999999999998754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.48  E-value=1.6e-13  Score=112.15  Aligned_cols=115  Identities=13%  Similarity=0.041  Sum_probs=86.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++...+   ..++++++.+|+.++....+++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN---LIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT---CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHhhhccCCceEE
Confidence            45689999999999999999886 234599999999999999999987542   23689999999988754455789999


Q ss_pred             EEcCCC-CCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLAD-PIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~-~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++++. +......  ......++++. +.++|+|||++++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSK-AMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHH-HHHhCcCCCEEEEEE
Confidence            999753 2110000  00012468888 799999999998765

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.48  E-value=6.1e-13  Score=110.19  Aligned_cols=117  Identities=16%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++.  ..+|++||+++++++.|++++...+   ...+++++.+|+.+.+.. .++||+|+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~-~~~~D~v~  127 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG---LSPRMRAVQGTAPAALAD-LPLPEAVF  127 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCTTGGGTT-SCCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCEEEEeCchhhhccc-CCCCCEEE
Confidence            45689999999999999999987  3699999999999999999876543   123899999999886543 35799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++...           ..++++. +.+.|+|||++++...      ..+....+.+.+++.
T Consensus       128 ~~~~~-----------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          128 IGGGG-----------SQALYDR-LWEWLAPGTRIVANAV------TLESETLLTQLHARH  170 (204)
T ss_dssp             ECSCC-----------CHHHHHH-HHHHSCTTCEEEEEEC------SHHHHHHHHHHHHHH
T ss_pred             ECCcc-----------cHHHHHH-HHHhcCCCcEEEEEec------CcccHHHHHHHHHhC
Confidence            87521           1237888 7999999999998753      244566666666655

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.48  E-value=2.8e-13  Score=111.61  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++.+ ..+++++|+++.+++.|++++...+   ..++++++.+|+.+. ....++||+|++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~~D~v~~  117 (219)
T 3dlc_A           43 TAGTCIDIGSGPGALSIALAKQS-DFSIRALDFSKHMNEIALKNIADAN---LNDRIQIVQGDVHNI-PIEDNYADLIVS  117 (219)
T ss_dssp             CEEEEEEETCTTSHHHHHHHHHS-EEEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECBTTBC-SSCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHhcc---ccCceEEEEcCHHHC-CCCcccccEEEE
Confidence            44599999999999999999873 4699999999999999999876543   246899999998763 233578999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-+....      ..++++. ++++|+|||.+++..
T Consensus       118 ~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          118 RGSVFFWED------VATAFRE-IYRILKSGGKTYIGG  148 (219)
T ss_dssp             ESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CchHhhccC------HHHHHHH-HHHhCCCCCEEEEEe
Confidence            864222111      2578888 799999999998864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.48  E-value=4.3e-13  Score=114.74  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      ..+.+|||||||+|..+..++...+..+|++||+++.+++.|+++....+    -.+++++++|+.++...  ..++||+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----l~~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG----LKGARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCceEEEECcHHHhhcccccCCCceE
Confidence            35689999999999999988876555799999999999999999987543    24699999999887542  2478999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      |++....+          -..+++. +.+.|+|||.+++..+..    ..+.+..+.+.++.
T Consensus       155 I~s~a~~~----------~~~ll~~-~~~~LkpgG~l~~~~g~~----~~~e~~~~~~~l~~  201 (249)
T 3g89_A          155 AVARAVAP----------LCVLSEL-LLPFLEVGGAAVAMKGPR----VEEELAPLPPALER  201 (249)
T ss_dssp             EEEESSCC----------HHHHHHH-HGGGEEEEEEEEEEECSC----CHHHHTTHHHHHHH
T ss_pred             EEECCcCC----------HHHHHHH-HHHHcCCCeEEEEEeCCC----cHHHHHHHHHHHHH
Confidence            99975421          1478888 799999999998766432    23444455555443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.47  E-value=1.8e-13  Score=117.26  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...+   ..++++++.+|+.+. ....++||+|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~i~  119 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSMDDL-PFRNEELDLIW  119 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcChhhC-CCCCCCEEEEE
Confidence            45789999999999999999997 44699999999999999999876442   246899999998664 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-..       +...++++. ++++|+|||.+++..
T Consensus       120 ~~~~~~~-------~~~~~~l~~-~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          120 SEGAIYN-------IGFERGLNE-WRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ESSCGGG-------TCHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EcCCcee-------cCHHHHHHH-HHHHcCCCCEEEEEE
Confidence            9854222       223578998 799999999998764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.47  E-value=1.8e-13  Score=114.36  Aligned_cols=105  Identities=20%  Similarity=0.320  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---C--C
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--E  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~--~  174 (251)
                      .++++|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+...   .  +
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            357899999999999999999863 25799999999999999999987543   2468999999998876532   1  6


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++|++..         ...++++. +.+.|+|||++++.
T Consensus       145 ~~D~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  178 (229)
T 2avd_A          145 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  178 (229)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            899999986521         12478888 79999999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=1.7e-13  Score=115.27  Aligned_cols=104  Identities=22%  Similarity=0.322  Sum_probs=85.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~I  179 (251)
                      ++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++...  +++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG---LESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            5679999999999999999887545799999999999999999986543   2358999999998865543  4789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++...+         ...++++. +.+.|+|||++++.
T Consensus       131 ~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          131 FIDAAKG---------QYRRFFDM-YSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEGGGS---------CHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            9986421         13578888 79999999999886

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.45  E-value=5.8e-13  Score=129.44  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=90.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||+|||+|.++..+++. +..+|++||+|+.+++.|++++..++  +..++++++++|+++++....++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng--l~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG--LTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--CCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            5789999999999999998885 45689999999999999999998764  22358999999999998776789999999


Q ss_pred             cCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       182 D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |+|...........+     -.++++. +.++|+|||++++.+++.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKD-LKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHH-HHHHEEEEEEEEEEECCT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCc
Confidence            997421101000111     2356777 689999999999877653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.45  E-value=4.9e-13  Score=113.64  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=88.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC----CCCCCeEEEEcchHHHHhc--CCCc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----FSDPRLELVINDARAELES--RKES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~----~~~~rv~~~~~D~~~~l~~--~~~~  175 (251)
                      ++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+...    ...++++++.+|+.+++..  ..+.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            457899999999999999998754468999999999999999887543100    0125799999999886653  3578


Q ss_pred             eeEEEEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|.|++..++++....  ...+...++++. +.++|+|||++++.+
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~-~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSE-YAYVLKEGGVVYTIT  173 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHH-HHHHcCCCCEEEEEe
Confidence            9999988776652110  123345789999 799999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.45  E-value=2.9e-13  Score=114.83  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...+   ..++++++.+|+.+. ...+++||+|+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  119 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN---CADRVKGITGSMDNL-PFQNEELDLIW  119 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECChhhC-CCCCCCEEEEE
Confidence            4567999999999999999998754 499999999999999999876543   245799999998653 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.       +...++++. ++++|+|||++++..
T Consensus       120 ~~~~l~~-------~~~~~~l~~-~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYN-------IGFERGMNE-WSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCC-------CCHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             ecChHhh-------cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            9864322       123578898 799999999998764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.44  E-value=3.8e-13  Score=111.69  Aligned_cols=109  Identities=21%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-CCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++..+..+|++||+|+.+++.|++++...+-. ...++++++.+|+.. .....++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCEE
Confidence            4578999999999999999998755579999999999999999987643200 011389999999733 22234789999


Q ss_pred             EEcCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++...-.       ++..   ..+++. +++.|+|||+++..
T Consensus       107 ~~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          107 TVIEVIE-------HLDENRLQAFEKV-LFEFTRPQTVIVST  140 (219)
T ss_dssp             EEESCGG-------GCCHHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             EEHHHHH-------hCCHHHHHHHHHH-HHHhhCCCEEEEEc
Confidence            9875321       2221   478898 79999999977754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.44  E-value=5.4e-13  Score=115.33  Aligned_cols=107  Identities=18%  Similarity=0.305  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+|++||+++.+++.|++.+...+   ..++++++.+|+.+.....+++||+|+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER-G-HQVILCDLSAQMIDRAKQAAEAKG---VSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHC-C---CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            45689999999999999999987 3 599999999999999999876432   236899999999887544568999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.....      ...+++. ++++|+|||++++..
T Consensus       142 ~~~~l~~~~~------~~~~l~~-~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          142 FHAVLEWVAD------PRSVLQT-LWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ECchhhcccC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence            9754322111      2578898 799999999998764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.44  E-value=4.4e-13  Score=117.04  Aligned_cols=110  Identities=18%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+   ...+++++.+|+.++    +++||+|+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  142 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWEEF----DEPVDRIV  142 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC---CSSCEEEEECCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECCHHHc----CCCccEEE
Confidence            4567999999999999999998744 689999999999999999876542   235899999999875    57899999


Q ss_pred             EcCCCCCCCCcc---cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~---~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+....|.   ..-....+++. ++++|+|||++++..
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHH-HHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            975422111110   01122578998 799999999999875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.44  E-value=2.8e-13  Score=114.30  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=84.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---C--Cc
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--ES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~--~~  175 (251)
                      ++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++...   +  ++
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG---VAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            568999999999999999998632 4699999999999999999886442   2358999999998876532   2  68


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+|++|...+         ...++++. +.+.|+|||++++..
T Consensus       149 fD~V~~d~~~~---------~~~~~l~~-~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          149 FDLIFIDADKR---------NYPRYYEI-GLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EEEEEECSCGG---------GHHHHHHH-HHHTEEEEEEEEEEC
T ss_pred             cCEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEeC
Confidence            99999996411         12578888 799999999998853

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.44  E-value=5.1e-13  Score=110.86  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-CCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+-. ...++++++.+|+.. .....++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY-QDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS-CCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc-ccccCCCcCEE
Confidence            3568999999999999999998755579999999999999999987643200 001389999999742 22234789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++...-... .+   -...++++. ++++|+|||++++.
T Consensus       107 ~~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~li~~  140 (217)
T 3jwh_A          107 TVIEVIEHL-DL---SRLGAFERV-LFEFAQPKIVIVTT  140 (217)
T ss_dssp             EEESCGGGC-CH---HHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             eeHHHHHcC-CH---HHHHHHHHH-HHHHcCCCEEEEEc
Confidence            987542210 10   012478888 79999999988764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.43  E-value=1.9e-12  Score=117.70  Aligned_cols=134  Identities=21%  Similarity=0.233  Sum_probs=96.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD  177 (251)
                      .++++|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++..++  +..++++++.+|+.+++...   +++||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            466899999999999999999863 5699999999999999999988763  10238999999999987532   46899


Q ss_pred             EEEEcCCCCCCCCcc--cC--CccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH-HHHHhh
Q 025534          178 VIIGDLADPIEGGPC--YK--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQV  241 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~--~~--l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~-~~l~~~  241 (251)
                      +|++|+|.... ...  ..  -...+++.. +.+.|+|||++++.+.+.  ....+.+..++ +.+.+.
T Consensus       296 ~Ii~dpP~~~~-~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~--~~~~~~~~~~i~~~~~~~  360 (396)
T 3c0k_A          296 VIVMDPPKFVE-NKSQLMGACRGYKDINML-AIQLLNEGGILLTFSCSG--LMTSDLFQKIIADAAIDA  360 (396)
T ss_dssp             EEEECCSSTTT-CSSSSSCCCTHHHHHHHH-HHHTEEEEEEEEEEECCT--TCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCC-ChhHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC--cCCHHHHHHHHHHHHHHc
Confidence            99999874211 110  00  112467777 689999999999877654  22333334433 355544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.43  E-value=1.9e-12  Score=117.80  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||+|||+|.++..+++. +. +|++||+|+.+++.|++++..++-     ..++.++|+++++....++||+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~ng~-----~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK-GA-YALAVDKDLEALGVLDQAALRLGL-----RVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTC-----CCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHhCC-----CCcEEEccHHHHHHHhcCCCCEEEE
Confidence            4789999999999999999986 43 599999999999999999887641     2357799999998764445999999


Q ss_pred             cCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       182 D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |+|.... .. ..+.     ..++++. +.+.|+|||++++.+.++
T Consensus       287 dpP~f~~-~~-~~~~~~~~~~~~ll~~-a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          287 DPPTLVK-RP-EELPAMKRHLVDLVRE-ALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCCCS-SG-GGHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             CCCcCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC
Confidence            9874211 11 1111     1367777 689999999998766554

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.43  E-value=3.3e-12  Score=102.83  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..  .+|+++|+|+.+++.+++++...+   ..++++++.+|+.+.+... ++||+|+
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~v~  105 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCKI-PDIDIAV  105 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTTS-CCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecCHHHhcccC-CCCCEEE
Confidence            456899999999999999998864  699999999999999999876542   2368999999998866432 5899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++.+.+.         ..++++. +.+.|+|||.+++...      ..+....+.+.+++.
T Consensus       106 ~~~~~~~---------~~~~l~~-~~~~l~~gG~l~~~~~------~~~~~~~~~~~l~~~  150 (192)
T 1l3i_A          106 VGGSGGE---------LQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDL  150 (192)
T ss_dssp             ESCCTTC---------HHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred             ECCchHH---------HHHHHHH-HHHhcCCCcEEEEEec------CcchHHHHHHHHHHC
Confidence            9854211         2578898 7999999999988652      234456666777665

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=2.7e-13  Score=117.39  Aligned_cols=124  Identities=15%  Similarity=0.057  Sum_probs=94.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..+..+|++||+++.+++.|++++..++    -++++++.+|+.++ .. .++||+|+
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~----l~~~~~~~~d~~~~-~~-~~~~D~Vi  191 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK----LNNVIPILADNRDV-EL-KDVADRVI  191 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT----CSSEEEEESCGGGC-CC-TTCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEECChHHc-Cc-cCCceEEE
Confidence            45689999999999999999987445699999999999999999988663    25789999999987 43 57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      +|++.    +      ..+++.. +.+.|+|||++++.+.+.. -...+.+.+.++.+++.+
T Consensus       192 ~d~p~----~------~~~~l~~-~~~~LkpgG~l~~s~~~~~-~~~~~~~~~~~~~~~~~~  241 (272)
T 3a27_A          192 MGYVH----K------THKFLDK-TFEFLKDRGVIHYHETVAE-KIMYERPIERLKFYAEKN  241 (272)
T ss_dssp             ECCCS----S------GGGGHHH-HHHHEEEEEEEEEEEEEEG-GGTTTHHHHHHHHHHHHT
T ss_pred             ECCcc----c------HHHHHHH-HHHHcCCCCEEEEEEcCcc-ccccccHHHHHHHHHHHh
Confidence            99763    1      1256777 6889999999987664321 011234556666666543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.43  E-value=1.3e-12  Score=113.94  Aligned_cols=111  Identities=16%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce---eE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY---DV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f---D~  178 (251)
                      ++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++...++   ...+++++++|+.+.+.   ++|   |+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~---l~~~v~~~~~D~~~~~~---~~f~~~D~  195 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFK---EKFASIEM  195 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGG---GGTTTCCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcchhhcc---cccCCCCE
Confidence            4579999999999999999988 56799999999999999999987543   23479999999988653   478   99


Q ss_pred             EEEcCCCCCC---------CCcccCCc----cHHHHHHHHc-ccCCCCcEEEEecC
Q 025534          179 IIGDLADPIE---------GGPCYKLY----TKSFYEFVVK-PRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~---------~~p~~~l~----~~ef~~~~~~-~~L~pgG~l~~~~~  220 (251)
                      |++|+|....         ..|...++    ..++++. +. +.|+|||.+++..+
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~-i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE-FFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH-HHHHCCCTTCEEEEECC
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH-HHHhcCCCCCEEEEEEC
Confidence            9999873210         01100000    1278999 78 99999999998764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.42  E-value=5e-13  Score=113.31  Aligned_cols=106  Identities=20%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+   ..++++++.+|+.+...  +++||+|+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~V~  108 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYVA--NEKCDVAA  108 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCCC--SSCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECChHhCCc--CCCCCEEE
Confidence            4568999999999999999988653 589999999999999999876432   23589999999877532  57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.......  +    ....+++. ++++|||||.+++..
T Consensus       109 ~~~~~~~~--~----~~~~~l~~-~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          109 CVGATWIA--G----GFAGAEEL-LAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EESCGGGT--S----SSHHHHHH-HTTSEEEEEEEEEEE
T ss_pred             ECCChHhc--C----CHHHHHHH-HHHHcCCCeEEEEec
Confidence            85432111  1    13578898 799999999988753

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.42  E-value=4.3e-13  Score=113.30  Aligned_cols=105  Identities=20%  Similarity=0.321  Sum_probs=84.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--------  172 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--------  172 (251)
                      ++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+   ..++++++.+|+.+++...        
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG---LENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHHHHHHHhhccccc
Confidence            568999999999999999988633 4699999999999999999986442   2357999999998876532        


Q ss_pred             -------C-CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 -------K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 -------~-~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                             + ++||+|+++...+         ...++++. +.+.|+|||++++..
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKE---------NYPNYYPL-ILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHH---------HHHHHHHH-HHHHcCCCeEEEEEc
Confidence                   2 6899999985311         12478888 799999999998854

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.42  E-value=3.4e-13  Score=112.97  Aligned_cols=106  Identities=19%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++...      ++++++.+|+.+...  .++||+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~~--~~~fD~v~  114 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN------LKVKYIEADYSKYDF--EEKYDMVV  114 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC------TTEEEEESCTTTCCC--CSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC------CCEEEEeCchhccCC--CCCceEEE
Confidence            4568999999999999999998754579999999999999999987532      389999999876532  27899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+..  +  .....++++. ++++|+|||.+++..
T Consensus       115 ~~~~l~~~--~--~~~~~~~l~~-~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHHL--E--DEDKKELYKR-SYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGGS--C--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCccccC--C--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            98542221  1  0111258898 799999999998754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.41  E-value=1.1e-12  Score=113.40  Aligned_cols=118  Identities=19%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++...+   ..++++++.+|+.+.+  ..++||+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~V  185 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDVDAL  185 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHcc--cCCccCEE
Confidence            45679999999999999999886 445799999999999999999876432   1257999999998763  23689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++|+++++           ++++. +.+.|+|||++++....      .+...++.+.|++.
T Consensus       186 ~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~~------~~~~~~~~~~l~~~  229 (277)
T 1o54_A          186 FLDVPDPW-----------NYIDK-CWEALKGGGRFATVCPT------TNQVQETLKKLQEL  229 (277)
T ss_dssp             EECCSCGG-----------GTHHH-HHHHEEEEEEEEEEESS------HHHHHHHHHHHHHS
T ss_pred             EECCcCHH-----------HHHHH-HHHHcCCCCEEEEEeCC------HHHHHHHHHHHHHC
Confidence            99875432           45677 68999999999987521      23455666666653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.41  E-value=2e-12  Score=117.12  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=95.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      ++++|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -++++++.+|+.+++..   .+++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~----~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            5679999999999999999986  4699999999999999999988764    23499999999998754   2578999


Q ss_pred             EEEcCCCCCCCCcccCC-----ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH-HHHHhhC
Q 025534          179 IIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVF  242 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~-~~l~~~F  242 (251)
                      |++|+|.... .+ ..+     ...+++.. +.+.|+|||++++.+.++  ....+.+..++ +.+.+..
T Consensus       283 Ii~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~--~~~~~~~~~~i~~~~~~~g  347 (382)
T 1wxx_A          283 VVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSH--HMTEPLFYAMVAEAAQDAH  347 (382)
T ss_dssp             EEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT--TSCHHHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCC-Ch-hHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC--CCCHHHHHHHHHHHHHHcC
Confidence            9999874221 11 111     12457777 689999999999887654  23333333333 4555443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.40  E-value=2.2e-12  Score=117.20  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=88.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      ++++|||+|||+|.++..+++. +..+|++||+++.+++.|++++..++   ..++++++.+|+.+++..   ..++||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~---~~~~v~~~~~d~~~~~~~~~~~~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFEEMEKLQKKGEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEECCHHHHHHHHHhhCCCCCE
Confidence            6689999999999999999986 45699999999999999999988664   223899999999998753   2578999


Q ss_pred             EEEcCCCCCCCCcccCC-----ccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          179 IIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |++|+|.... .. ..+     ...+++.. +.+.|+|||++++.+.++
T Consensus       293 Vi~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          293 VVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCC
Confidence            9999874221 11 111     12457777 689999999988877554

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.40  E-value=8.7e-13  Score=113.09  Aligned_cols=110  Identities=12%  Similarity=-0.013  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-------c-CC-----CCCCCeEEEEcchHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-------K-EA-----FSDPRLELVINDARA  167 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-------~-~~-----~~~~rv~~~~~D~~~  167 (251)
                      .++.+|||+|||+|..+..|++. + .+|++||+++.+++.|++.....       . ..     -..++++++++|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-G-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35689999999999999999986 4 48999999999999998754310       0 00     013689999999987


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .-....++||+|+....-..  -+.  -....+++. +.++|||||++++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~--l~~--~~~~~~l~~-~~~~LkpGG~l~l  189 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVA--INP--GDHDRYADI-ILSLLRKEFQYLV  189 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTT--SCG--GGHHHHHHH-HHHTEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhh--CCH--HHHHHHHHH-HHHHcCCCeEEEE
Confidence            54322378999997654222  111  113468888 7999999999853

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.40  E-value=1.1e-12  Score=118.63  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||+|||+|.++..+++..+..+|++||+|+.+++.|++++..++.. ...+++++.+|+.+.+  .+++||+|++
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~-~~~~v~~~~~D~~~~~--~~~~fD~Ii~  298 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLC  298 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGGGEEEEECSTTTTC--CTTCEEEEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC-cCceEEEEechhhccC--CCCCeeEEEE
Confidence            348999999999999999998755579999999999999999998755310 1236888999988754  3478999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++.+..... ..-...++++. +.++|+|||++++-.
T Consensus       299 nppfh~~~~~-~~~~~~~~l~~-~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          299 NPPFHQQHAL-TDNVAWEMFHH-ARRCLKINGELYIVA  334 (375)
T ss_dssp             CCCC--------CCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCcccCccc-CHHHHHHHHHH-HHHhCCCCcEEEEEE
Confidence            9875431111 11223478998 799999999998854

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.39  E-value=9.7e-13  Score=108.21  Aligned_cols=101  Identities=18%  Similarity=0.255  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++...+    .++++++.+|+.++.   .++||+|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~~fD~i~  130 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNG----IYDIALQKTSLLADV---DGKFDLIV  130 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT----CCCCEEEESSTTTTC---CSCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEeccccccC---CCCceEEE
Confidence            46789999999999999998886 44699999999999999999887543    234999999987753   47899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.+.+       .  ...+++. +.+.|+|||.+++..
T Consensus       131 ~~~~~~-------~--~~~~l~~-~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          131 ANILAE-------I--LLDLIPQ-LDSHLNEDGQVIFSG  159 (205)
T ss_dssp             EESCHH-------H--HHHHGGG-SGGGEEEEEEEEEEE
T ss_pred             ECCcHH-------H--HHHHHHH-HHHhcCCCCEEEEEe
Confidence            986421       1  2567788 799999999998853

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.39  E-value=2.4e-12  Score=106.61  Aligned_cols=101  Identities=17%  Similarity=0.076  Sum_probs=79.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++. + .+++++|+++.+++.+++.++        ++++++.+|+.++. .. ++||+|++
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~~-~~-~~fD~v~~  112 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA-G-RTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSFE-VP-TSIDTIVS  112 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSCC-CC-SCCSEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhcC-CC-CCeEEEEE
Confidence            6689999999999999999986 3 599999999999999998753        47899999987753 22 78999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-+.  .+  ......+++. +++.|+|||.+++..
T Consensus       113 ~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHH--LT--DDEKNVAIAK-YSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ESCGGG--SC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             Ccchhc--CC--hHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            854222  11  0111348888 799999999998864

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.39  E-value=9.3e-13  Score=112.23  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.|++++...+    .++++++.+|+.+. ...+++||+|+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~l-~~~~~~fD~V~  108 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM-PFTDERFHIVT  108 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC-CSCTTCEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEecHHhC-CCCCCCEEEEE
Confidence            467899999999999999998864  499999999999999999876432    35799999998763 33357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-++...      ...++++ ++++|+|||.+++.
T Consensus       109 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          109 CRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLV  139 (260)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EhhhhHhcCC------HHHHHHH-HHHHcCCCCEEEEE
Confidence            9854322111      2478898 79999999999875

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.39  E-value=6.9e-13  Score=109.77  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.|++++..      .++++++.+|+.++.  ..++||+|+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~--~~~~fD~v~  119 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQFS--TAELFDLIV  119 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTCC--CSCCEEEEE
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhCC--CCCCccEEE
Confidence            345799999999999999998863  5999999999999999998753      258999999988764  457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-++...+   -....+++. ++++|+|||++++..
T Consensus       120 ~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          120 VAEVLYYLEDM---TQMRTAIDN-MVKMLAPGGHLVFGS  154 (216)
T ss_dssp             EESCGGGSSSH---HHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EccHHHhCCCH---HHHHHHHHH-HHHHcCCCCEEEEEe
Confidence            98542221011   001367888 799999999999853

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.39  E-value=8.3e-13  Score=108.57  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++...+    .++++++.+|+.++.  ..++||+|++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEecchhhCC--ccCCcCEEEE
Confidence            4679999999999999999886445799999999999999999876542    245999999988754  2468999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...+          ...+++. +++.|+|||.+++..+
T Consensus       139 ~~~~~----------~~~~l~~-~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          139 RAFAS----------LNDMVSW-CHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SCSSS----------HHHHHHH-HTTSEEEEEEEEEEES
T ss_pred             eccCC----------HHHHHHH-HHHhcCCCcEEEEEeC
Confidence            64311          2478888 7999999999998765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.39  E-value=7.6e-13  Score=109.95  Aligned_cols=106  Identities=20%  Similarity=0.267  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|||||||+|.++..+++..+  +++++|+++.+++.|++++...     .++++++.+|+.+. ....++||+|+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~~D~v~  108 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYVI  108 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-----CCCceEEECchhcC-CCCCCcEEEEE
Confidence            4478999999999999999888643  9999999999999999987644     26899999998763 22346899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++..-+.. ..   ....++++. ++++|+|||.+++..
T Consensus       109 ~~~~~~~~-~~---~~~~~~l~~-~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          109 FIDSIVHF-EP---LELNQVFKE-VRRVLKPSGKFIMYF  142 (227)
T ss_dssp             EESCGGGC-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCchHhC-CH---HHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            98651110 10   012468888 799999999998764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.38  E-value=4.9e-12  Score=109.40  Aligned_cols=116  Identities=15%  Similarity=0.065  Sum_probs=87.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~f  176 (251)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+    -++++++.+|+.++...   ..++|
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~~f  157 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG----VLNTIIINADMRKYKDYLLKNEIFF  157 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC----CCcEEEEeCChHhcchhhhhccccC
Confidence            456799999999999999988753 33699999999999999999887543    24899999999887542   25689


Q ss_pred             eEEEEcCCCCCCCCccc-------------CCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          177 DVIIGDLADPIEGGPCY-------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~-------------~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |+|++|++.... +...             .-...++++. +.+.|||||+++..+.+.
T Consensus       158 D~Vl~d~Pcs~~-g~~~~~p~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          158 DKILLDAPCSGN-IIKDKNRNVSEEDIKYCSLRQKELIDI-GIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEEEEECCC-------------HHHHTGGGTCHHHHHHH-HHHHEEEEEEEEEEESCC
T ss_pred             CEEEEcCCCCCC-cccccCCCCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEECCC
Confidence            999999874321 1000             0123678888 789999999999876543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.38  E-value=1.5e-12  Score=112.50  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... +    .++++++.+|+.+.+  .+++||+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~~--~~~~fD~  182 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFI--SDQMYDA  182 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCC--CSCCEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECchhccC--cCCCccE
Confidence            35679999999999999999886 44579999999999999999987643 2    258999999988743  2468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      |+++.+++.           ++++. +.+.|+|||++++....      ......+.+.+++.
T Consensus       183 Vi~~~~~~~-----------~~l~~-~~~~LkpgG~l~i~~~~------~~~~~~~~~~l~~~  227 (275)
T 1yb2_A          183 VIADIPDPW-----------NHVQK-IASMMKPGSVATFYLPN------FDQSEKTVLSLSAS  227 (275)
T ss_dssp             EEECCSCGG-----------GSHHH-HHHTEEEEEEEEEEESS------HHHHHHHHHHSGGG
T ss_pred             EEEcCcCHH-----------HHHHH-HHHHcCCCCEEEEEeCC------HHHHHHHHHHHHHC
Confidence            999865321           46777 68999999999987522      33455666666654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.38  E-value=7.5e-13  Score=115.46  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-----------------------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------------------------  152 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-----------------------------  152 (251)
                      ++++|||||||+|.++..+++..+..+|++||+|+.+++.|++++......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999998755579999999999999999986432100                             


Q ss_pred             ------------------------C-CCCCeEEEEcchHHH----HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHH
Q 025534          153 ------------------------F-SDPRLELVINDARAE----LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (251)
Q Consensus       153 ------------------------~-~~~rv~~~~~D~~~~----l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~  203 (251)
                                              . -..+++++.+|+...    +....++||+|++.....+..-....-....+++.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                    0 014899999997632    22245789999997542110000000023568898


Q ss_pred             HHcccCCCCcEEEEec
Q 025534          204 VVKPRLNPEGIFVTQA  219 (251)
Q Consensus       204 ~~~~~L~pgG~l~~~~  219 (251)
                       ++++|+|||+|++..
T Consensus       206 -~~~~LkpGG~lil~~  220 (292)
T 3g07_A          206 -IYRHLRPGGILVLEP  220 (292)
T ss_dssp             -HHHHEEEEEEEEEEC
T ss_pred             -HHHHhCCCcEEEEec
Confidence             799999999999864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.38  E-value=3.3e-13  Score=111.62  Aligned_cols=107  Identities=11%  Similarity=0.041  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC--------CCCCCCeEEEEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~--------~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      +++.+|||+|||+|..+..+++. + .+|++||+|+.|++.|++.......        .+..++++++++|+.+.-...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-C-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            46789999999999999999987 3 5899999999999999987542100        001368999999987653211


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~  214 (251)
                      .++||+|++...-..  -+.  -....+++. ++++|||||+
T Consensus        99 ~~~fD~v~~~~~l~~--l~~--~~~~~~l~~-~~r~LkpgG~  135 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIA--LPA--DMRERYVQH-LEALMPQACS  135 (203)
T ss_dssp             HHSEEEEEEESCGGG--SCH--HHHHHHHHH-HHHHSCSEEE
T ss_pred             CCCEEEEEECcchhh--CCH--HHHHHHHHH-HHHHcCCCcE
Confidence            158999998643211  110  112357888 7999999997

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.38  E-value=2.2e-12  Score=108.77  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++...+   .+++++++.+|+.+... .++.||+|+
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~-~~~~~D~v~  163 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN---LGKNVKFFNVDFKDAEV-PEGIFHAAF  163 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT---CCTTEEEECSCTTTSCC-CTTCBSEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC---CCCcEEEEEcChhhccc-CCCcccEEE
Confidence            35689999999999999999987  3699999999999999999876432   23689999999887531 246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      ++++++           .++++. +.+.|+|||.+++...      ..+....+.+.+++.|..+
T Consensus       164 ~~~~~~-----------~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~f~~~  210 (248)
T 2yvl_A          164 VDVREP-----------WHYLEK-VHKSLMEGAPVGFLLP------TANQVIKLLESIENYFGNL  210 (248)
T ss_dssp             ECSSCG-----------GGGHHH-HHHHBCTTCEEEEEES------SHHHHHHHHHHSTTTEEEE
T ss_pred             ECCcCH-----------HHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhhCCcc
Confidence            986532           145677 6899999999998752      2345566666666545544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.9e-12  Score=112.82  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  174 (251)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++....  ...++++++++|+.+.-...     .+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP--DTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc--CCCCceEEEEcCHHhCCccccccccCC
Confidence            467899999999999999999642 45799999999999999999876431  02478999999987743221     16


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++...-++       +.-..+++. ++++|+|||.+++.
T Consensus       113 ~fD~V~~~~~l~~-------~~~~~~l~~-~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          113 KIDMITAVECAHW-------FDFEKFQRS-AYANLRKDGTIAIW  148 (299)
T ss_dssp             CEEEEEEESCGGG-------SCHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CeeEEeHhhHHHH-------hCHHHHHHH-HHHhcCCCcEEEEE
Confidence            8999999864332       233578998 79999999999873

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=1.8e-11  Score=97.80  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=90.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++ + ..+++++|+++.+++.+++++..++    -++++++.+|+.+.+..  ++||+|+
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~--~~~D~i~  105 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK-R-CKFVYAIDYLDGAIEVTKQNLAKFN----IKNCQIIKGRAEDVLDK--LEFNKAF  105 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT-T-SSEEEEEECSHHHHHHHHHHHHHTT----CCSEEEEESCHHHHGGG--CCCSEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEECCccccccC--CCCcEEE
Confidence            4567999999999999999988 3 4799999999999999999887542    25799999999985543  6899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      ++.+ .   .      ..++++. ++++  |||.+++...      ....+..+.+.+++..
T Consensus       106 ~~~~-~---~------~~~~l~~-~~~~--~gG~l~~~~~------~~~~~~~~~~~l~~~g  148 (183)
T 2yxd_A          106 IGGT-K---N------IEKIIEI-LDKK--KINHIVANTI------VLENAAKIINEFESRG  148 (183)
T ss_dssp             ECSC-S---C------HHHHHHH-HHHT--TCCEEEEEES------CHHHHHHHHHHHHHTT
T ss_pred             ECCc-c---c------HHHHHHH-HhhC--CCCEEEEEec------ccccHHHHHHHHHHcC
Confidence            9865 1   1      2477887 6766  9999988652      2445667777777654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.38  E-value=2.6e-12  Score=109.01  Aligned_cols=118  Identities=13%  Similarity=0.127  Sum_probs=91.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... +    .++++++.+|+.+. ....++||+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~-~~~~~~~D~  169 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ----VENVRFHLGKLEEA-ELEEAAYDG  169 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEESCGGGC-CCCTTCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC----CCCEEEEECchhhc-CCCCCCcCE
Confidence            45679999999999999999886 43479999999999999999987643 2    36899999998875 112368999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      |++|+++++           ++++. +.+.|+|||.+++...      ..+...++.+.|++.
T Consensus       170 v~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~  214 (258)
T 2pwy_A          170 VALDLMEPW-----------KVLEK-AALALKPDRFLVAYLP------NITQVLELVRAAEAH  214 (258)
T ss_dssp             EEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHTTT
T ss_pred             EEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence            999865321           46777 6899999999998652      234556777777653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.38  E-value=1.3e-12  Score=118.40  Aligned_cols=110  Identities=20%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|.++..+++. + .+|++||+|+.+++.|++++..++     .+++++.+|+.+... ..++||+|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-g-~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~D~~~~~~-~~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-G-AEVVGVEDDLASVLSLQKGLEANA-----LKAQALHSDVDEALT-EEARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-T-CEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTSC-TTCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEcchhhccc-cCCCeEEEEE
Confidence            5679999999999999999987 3 599999999999999999987653     348999999988653 2478999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |++.+.. .....-...++++. ++++|+|||++++...+
T Consensus       305 npp~~~~-~~~~~~~~~~~l~~-~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          305 NPPFHVG-GAVILDVAQAFVNV-AAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             CCCCCTT-CSSCCHHHHHHHHH-HHHHEEEEEEEEEEECT
T ss_pred             CCchhhc-ccccHHHHHHHHHH-HHHhcCcCcEEEEEEcC
Confidence            9875441 11011123578888 79999999999987643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.37  E-value=1.9e-12  Score=106.74  Aligned_cols=101  Identities=18%  Similarity=0.211  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++.  ..+|+++|+++.+++.|++++...+    .++++++.+|+.+.... .++||+|+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~i~  148 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD----LHNVSTRHGDGWQGWQA-RAPFDAII  148 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC----CCceEEEECCcccCCcc-CCCccEEE
Confidence            45789999999999999999987  3699999999999999999887542    34799999999875432 47899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++...+.  .+          +. +.+.|+|||++++....
T Consensus       149 ~~~~~~~--~~----------~~-~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPE--IP----------TA-LMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSS--CC----------TH-HHHTEEEEEEEEEEECS
T ss_pred             Eccchhh--hh----------HH-HHHhcccCcEEEEEEcC
Confidence            9865332  11          14 57899999999987644

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.37  E-value=2.2e-12  Score=110.44  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.+++++...+   ..++++++.+|+.+. ...+++||+|+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  134 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAAG---LANRVTFSYADAMDL-PFEDASFDAVW  134 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECccccC-CCCCCCccEEE
Confidence            4568999999999999999988644 699999999999999999876432   245899999998763 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.+...      ...+++. ++++|+|||.+++..
T Consensus       135 ~~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLHHMPD------RGRALRE-MARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTTTSSC------HHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             EechhhhCCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence            8754322111      2578898 799999999988764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.37  E-value=1.2e-12  Score=112.44  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++..+..+|+++|+++.+++.+++++...+    .++++++.+|+.+.. ..+++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~  110 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG----IKNVKFLQANIFSLP-FEDSSFDHIF  110 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGCC-SCTTCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEcccccCC-CCCCCeeEEE
Confidence            46789999999999999999987545799999999999999999876542    357999999988642 3357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.....      ...+++. ++++|+|||++++..
T Consensus       111 ~~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFVLEHLQS------PEEALKS-LKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EechhhhcCC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            9865322111      2478888 799999999998754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.37  E-value=3.6e-12  Score=113.12  Aligned_cols=122  Identities=12%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhc-------ccCCCCCCCeEEEEcchHHHHhc-
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVV-------NKEAFSDPRLELVINDARAELES-  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~-------~~~~~~~~rv~~~~~D~~~~l~~-  171 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++..       +...-..++++++.+|+.+.+.. 
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            45689999999999999999886 3446999999999999999998762       21000135899999999875422 


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      ..++||+|++|.+.++           .+++. +.++|+|||.+++...      ........++.+++
T Consensus       184 ~~~~fD~V~~~~~~~~-----------~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~  234 (336)
T 2b25_A          184 KSLTFDAVALDMLNPH-----------VTLPV-FYPHLKHGGVCAVYVV------NITQVIELLDGIRT  234 (336)
T ss_dssp             ----EEEEEECSSSTT-----------TTHHH-HGGGEEEEEEEEEEES------SHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCHH-----------HHHHH-HHHhcCCCcEEEEEeC------CHHHHHHHHHHHHh
Confidence            2357999999976543           14677 7999999999997652      24455666666665

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.36  E-value=5.9e-13  Score=115.76  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..++++. ..+|+++|+||.+++.++++...|+   -..+++++.+|++++..  .+.||.|+
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~---v~~~v~~~~~D~~~~~~--~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCcHHHhcc--ccCCCEEE
Confidence            567899999999999999999874 4689999999999999999998875   35689999999998863  47899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++++..          +.+|+.. +.+.|+|||++.+..
T Consensus       198 ~~~p~~----------~~~~l~~-a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCCCc----------HHHHHHH-HHHHcCCCCEEEEEe
Confidence            997621          2367777 678999999987654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.36  E-value=7.1e-12  Score=116.15  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++...+    -. ++++.+|+.++.....++||+|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G----~~-v~~~~~Da~~l~~~~~~~FD~I  174 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG----AP-LAVTQAPPRALAEAFGTYFHRV  174 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC----CC-CEEECSCHHHHHHHHCSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----Ce-EEEEECCHHHhhhhccccCCEE
Confidence            456899999999999999998753 33689999999999999999987553    23 9999999998764346789999


Q ss_pred             EEcCCCCCC----CCcccC-C-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~----~~p~~~-l-----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|....    ..|... .           ...++++. +.+.|||||+++..+++.   . .+....+++.+.+.+|
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvysTCs~---~-~eEne~vv~~~l~~~~  249 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQ-ASRLLGPGGVLVYSTCTF---A-PEENEGVVAHFLKAHP  249 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESCC---C-GGGTHHHHHHHHHHCT
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeccC---c-hhcCHHHHHHHHHHCC
Confidence            999984211    012100 0           11678888 789999999999776543   2 2333445555555555


Q ss_pred             c
Q 025534          244 C  244 (251)
Q Consensus       244 ~  244 (251)
                      +
T Consensus       250 ~  250 (464)
T 3m6w_A          250 E  250 (464)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.35  E-value=1.9e-12  Score=108.50  Aligned_cols=100  Identities=12%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.|++.++        ++++++.+|+.+.  ..+++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~--------~~v~~~~~d~~~~--~~~~~fD~v~  108 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA--QLPRRYDNIV  108 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC--CCSSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh--------CCeEEEEccHHHc--CcCCcccEEE
Confidence            356789999999999999998864  389999999999999998753        1799999998876  2457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHc-ccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~-~~L~pgG~l~~~~  219 (251)
                      +...-+....      ...++++ ++ ++|+|||.+++..
T Consensus       109 ~~~~l~~~~~------~~~~l~~-~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          109 LTHVLEHIDD------PVALLKR-INDDWLAEGGRLFLVC  141 (250)
T ss_dssp             EESCGGGCSS------HHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             EhhHHHhhcC------HHHHHHH-HHHHhcCCCCEEEEEc
Confidence            8754222111      2578898 79 9999999998865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.35  E-value=2.4e-12  Score=106.17  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++.        ..++++++.+|+.++  ...++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~~d~~~~--~~~~~~D~v~  112 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGL-A-DRVTALDGSAEMIAEAGRH--------GLDNVEFRQQDLFDW--TPDRQWDAVF  112 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHH-S-SEEEEEESCHHHHHHHGGG--------CCTTEEEEECCTTSC--CCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHhc--------CCCCeEEEecccccC--CCCCceeEEE
Confidence            45579999999999999999987 3 5999999999999999982        236899999999876  3468999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.  .+.  -....+++. ++++|+|||.+++..
T Consensus       113 ~~~~l~~--~~~--~~~~~~l~~-~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          113 FAHWLAH--VPD--DRFEAFWES-VRSAVAPGGVVEFVD  146 (218)
T ss_dssp             EESCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eechhhc--CCH--HHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9754221  110  001578888 799999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.35  E-value=6.5e-12  Score=105.92  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.+++++...+    .++++++.+|+.+. ...+++||+|+
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~v~   92 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAESL-PFPDDSFDIIT   92 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTBC-CSCTTCEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEecccccC-CCCCCcEEEEE
Confidence            467899999999999999998864  499999999999999999876442    25799999998663 33357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....++...      ...+++. ++++|+|||.+++..
T Consensus        93 ~~~~l~~~~~------~~~~l~~-~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           93 CRYAAHHFSD------VRKAVRE-VARVLKQDGRFLLVD  124 (239)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchhhccC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            9854222111      2578888 799999999988753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.35  E-value=1.5e-12  Score=108.51  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~  178 (251)
                      .++.+|||+|||+|..+..+++..+..+|++||+++.+++.+.+....      .+++.++.+|+.....  ...++||+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchhhcccccceeE
Confidence            356799999999999999988764346999999999987655543321      1468889999876411  12378999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++...+.        ....+++. +++.|||||.+++..
T Consensus       130 V~~~~~~~~--------~~~~~l~~-~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          130 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEeccChh--------HHHHHHHH-HHHHhCCCCEEEEEE
Confidence            999954321        12345788 799999999998764

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.35  E-value=3.4e-12  Score=103.71  Aligned_cols=105  Identities=12%  Similarity=0.108  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+    .++++++.+|+.+.. . .++||+|+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~-~~~~D~v~  102 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN-G-YDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDLNNLT-F-DRQYDFIL  102 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCGGGCC-C-CCCEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcchhhCC-C-CCCceEEE
Confidence            35679999999999999999986 3 599999999999999999876442    257999999987742 2 57899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-+.. .+   -....+++. ++++|+|||.+++.
T Consensus       103 ~~~~l~~~-~~---~~~~~~l~~-~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          103 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLIV  135 (199)
T ss_dssp             EESCGGGS-CG---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EcchhhhC-CH---HHHHHHHHH-HHHhcCCCeEEEEE
Confidence            98643221 11   123578888 79999999987653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.35  E-value=4.5e-12  Score=106.86  Aligned_cols=106  Identities=9%  Similarity=0.069  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++.+|+.+.+.. .++||+|+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~i~~~~~d~l~~l~~-~~~~D~Iv   89 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG---LKEKIQVRLANGLAAFEE-TDQVSVIT   89 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECchhhhccc-CcCCCEEE
Confidence            45679999999999999999987656799999999999999999988664   245899999999876632 23699998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.-       ... -.-.+++.. ..++|+++|.++++.
T Consensus        90 iaG-------~Gg-~~i~~Il~~-~~~~L~~~~~lVlq~  119 (225)
T 3kr9_A           90 IAG-------MGG-RLIARILEE-GLGKLANVERLILQP  119 (225)
T ss_dssp             EEE-------ECH-HHHHHHHHH-TGGGCTTCCEEEEEE
T ss_pred             EcC-------CCh-HHHHHHHHH-HHHHhCCCCEEEEEC
Confidence            742       111 113578888 689999999999975

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.35  E-value=6.7e-12  Score=108.04  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=91.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... +.  ..++++++.+|+.+.. ...++||+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~--~~~~v~~~~~d~~~~~-~~~~~~D~  174 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADSE-LPDGSVDR  174 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGCC-CCTTCEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCCcEEEEECchHhcC-CCCCceeE
Confidence            45679999999999999999885 33469999999999999999987643 10  1358999999987752 22468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      |+++.++++           ++++. +.++|+|||.+++...      ..+.+.++...+++
T Consensus       175 v~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          175 AVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYVA------TVTQLSRIVEALRA  218 (280)
T ss_dssp             EEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHH
T ss_pred             EEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHh
Confidence            999876432           45777 6899999999998752      23456677777775

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.35  E-value=3.3e-12  Score=110.37  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.+++.+...+   ..++++++.+|+.++    +++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~----~~~fD~v~  134 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRIV  134 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC----CCCeeEEE
Confidence            4567999999999999999985434 499999999999999999876432   246899999998653    27899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-... .+   -....+++. ++++|||||.+++..
T Consensus       135 ~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHF-GH---ERYDAFFSL-AHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGT-CT---TTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeCchhhc-Ch---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            87432110 10   113578898 799999999998865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.34  E-value=1.5e-12  Score=110.44  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.+++.         .++++++.+|+.++.  .+++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~d~~~~~--~~~~fD~v~  100 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---------LPNTNFGKADLATWK--PAQKADLLY  100 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---------STTSEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------CCCcEEEECChhhcC--ccCCcCEEE
Confidence            456899999999999999998863346899999999999999986         257899999987753  457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-++.  +    ....+++. ++++|+|||.+++..
T Consensus       101 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          101 ANAVFQWV--P----DHLAVLSQ-LMDQLESGGVLAVQM  132 (259)
T ss_dssp             EESCGGGS--T----THHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EeCchhhC--C----CHHHHHHH-HHHhcCCCeEEEEEe
Confidence            97653321  1    13578888 799999999999876

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.34  E-value=2.3e-12  Score=109.22  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=81.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+.       .++++++.+|+.+. ....++||+|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~v~~  114 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI-AIEPDAYNVVLS  114 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC-CCCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC-CCCCCCeEEEEE
Confidence            57899999999999999999874 3499999999999999998764       36899999998764 333578999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-....      ...++++. ++++|+|||.+++..
T Consensus       115 ~~~l~~~~------~~~~~l~~-~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          115 SLALHYIA------SFDDICKK-VYINLKSSGSFIFSV  145 (253)
T ss_dssp             ESCGGGCS------CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             chhhhhhh------hHHHHHHH-HHHHcCCCcEEEEEe
Confidence            76422211      12578898 799999999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=3.4e-12  Score=106.69  Aligned_cols=104  Identities=17%  Similarity=0.175  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~~~~~~fD  177 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.++++...      .++++++.+|+.+..  ....++||
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc------cCCCEEEEccCCCcchhhcccCCce
Confidence            35679999999999999999876 3346999999999999999887653      268999999987632  22346899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++|.+.+.        ....+++. +.+.|+|||.+++..
T Consensus       146 ~v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEECCCCHh--------HHHHHHHH-HHHhcCCCCEEEEEE
Confidence            9999876321        12355888 799999999988753

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.34  E-value=2.5e-12  Score=108.04  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~  178 (251)
                      .++.+|||+|||+|.++..+++..+..+|++||+++.+++.++++...      .++++++.+|+.+...  ...++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGGTTTSCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCcccccccCccEEE
Confidence            356799999999999999999874456999999999999999987542      2689999999876211  11268999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+.+.+++.        ....+++. +.+.|+|||.+++.
T Consensus       147 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          147 IYEDVAQPN--------QAEILIKN-AKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEEecCChh--------HHHHHHHH-HHHhCCCCcEEEEE
Confidence            998754321        12467888 79999999998874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=116.04  Aligned_cols=105  Identities=13%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +++.|||||||+|.++..+++. ++.+|++||.++ +++.|++.+..++   ...+++++.+|..+.  ..+++||+|++
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~---~~~~i~~i~~~~~~~--~lpe~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNG---LEDRVHVLPGPVETV--ELPEQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcC---CCceEEEEeeeeeee--cCCccccEEEe
Confidence            5689999999999999988886 567999999997 7899999887664   357899999998775  34589999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      .......  . ..-....++.. ..+.|+|||+++-
T Consensus       156 E~~~~~l--~-~e~~l~~~l~a-~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          156 EWMGYGL--L-HESMLSSVLHA-RTKWLKEGGLLLP  187 (376)
T ss_dssp             CCCBTTB--T-TTCSHHHHHHH-HHHHEEEEEEEES
T ss_pred             ecccccc--c-ccchhhhHHHH-HHhhCCCCceECC
Confidence            8764321  1 11123456666 5799999999873

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.34  E-value=1.9e-12  Score=112.10  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...     .++++++.+|+.++.  .+++||+|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~v   93 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEIE--LNDKYDIA   93 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-----SSEEEEEESCTTTCC--CSSCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcchhhcC--cCCCeeEE
Confidence            4678999999999999999988643 479999999999999999987643     248999999998742  24689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-...  +    ...++++. +++.|+|||.+++..
T Consensus        94 ~~~~~l~~~--~----~~~~~l~~-~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           94 ICHAFLLHM--T----TPETMLQK-MIHSVKKGGKIICFE  126 (284)
T ss_dssp             EEESCGGGC--S----SHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EECChhhcC--C----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            998653221  1    12578898 799999999998764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.34  E-value=1.1e-12  Score=111.24  Aligned_cols=99  Identities=18%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-C
Q 025534          102 NPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-E  174 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~  174 (251)
                      ++.+|||||||+|..+..+++.    .+..+|++||+++.+++.|+..         .++++++++|+.+.  +.... .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---------~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---------MENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---------CCceEEEECcchhHHHHHhhccC
Confidence            4679999999999999998875    3457999999999999888721         26899999999875  33223 3


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcc-cCCCCcEEEEec
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~-~L~pgG~l~~~~  219 (251)
                      +||+|++|....         ...++++. +.+ +|+|||++++..
T Consensus       152 ~fD~I~~d~~~~---------~~~~~l~~-~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNAHA---------NTFNIMKW-AVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESSCS---------SHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCchH---------hHHHHHHH-HHHhhCCCCCEEEEEe
Confidence            799999987521         12467888 686 999999999854

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.33  E-value=2.5e-12  Score=112.88  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=83.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|++||+++.+++.|++++...+   ..++++++.+|+.+. ...+++||+|+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~  190 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELR---IDDHVRSRVCNMLDT-PFDKGAVTASW  190 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhcC-CCCCCCEeEEE
Confidence            3568999999999999999988633 689999999999999999876543   245899999998763 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-..       +-..++++. ++++|+|||++++..
T Consensus       191 ~~~~l~~-------~~~~~~l~~-~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMY-------VDLHDLFSE-HSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGG-------SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchhh-------CCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8743221       224688998 799999999988754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.33  E-value=3.6e-12  Score=114.04  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++.+++... +..+|+++|+|+.+++.|++++...+   . ++++++++|+.++.. ..+.||+|
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~-~~i~~~~~D~~~~~~-~~~~~D~I  276 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---L-SWIRFLRADARHLPR-FFPEVDRI  276 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---C-TTCEEEECCGGGGGG-TCCCCSEE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---C-CceEEEeCChhhCcc-ccCCCCEE
Confidence            456799999999999999998863 44689999999999999999987543   1 289999999988643 34569999


Q ss_pred             EEcCCCCCCCCcccCC--ccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKL--YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l--~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++|+|..........+  .-.++++. ++++|+|||.+++.+
T Consensus       277 i~npPyg~r~~~~~~~~~~~~~~~~~-~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          277 LANPPHGLRLGRKEGLFHLYWDFLRG-ALALLPPGGRVALLT  317 (354)
T ss_dssp             EECCCSCC----CHHHHHHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             EECCCCcCccCCcccHHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            9999854321111111  11567888 799999999998865

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.33  E-value=1.4e-11  Score=108.76  Aligned_cols=115  Identities=16%  Similarity=0.050  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+    -++++++.+|+.++.. ..++||+|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~I  191 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGE-LNVEFDKI  191 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGG-GCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCeEEEEECChhhccc-ccccCCEE
Confidence            456799999999999999998753 34689999999999999999986543    2479999999988643 35689999


Q ss_pred             EEcCCCCCC----CCccc-CCc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~~-~l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|++....    ..|.. ..+           ..++++. +.+.|||||++++.+.+
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~-~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeCC
Confidence            999873211    01100 001           1478888 78999999999886644

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.33  E-value=8.1e-12  Score=103.29  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      ..+.+|||||||+|.++..+++. + .+|+++|+++.+++.+++.          ++++++..|+.+....   ..++||
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR-G-IEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhcccccccCCCcc
Confidence            35689999999999999999987 3 5899999999999999986          3578889998887322   235699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|++...-+. ..      ...+++. ++++|+|||.+++...
T Consensus       119 ~v~~~~~l~~-~~------~~~~l~~-~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALLH-QD------IIELLSA-MRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCCS-SC------CHHHHHH-HHHTEEEEEEEEEEEC
T ss_pred             EEEECchhhh-hh------HHHHHHH-HHHHhCCCeEEEEEec
Confidence            9999764331 12      2478898 7999999999998654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.33  E-value=2.1e-12  Score=108.41  Aligned_cols=106  Identities=17%  Similarity=0.146  Sum_probs=81.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|..+..+++. + .+|+++|+++.+++.|++++...+   ...+++++.+|+.++.  ..++||+|++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~v~~  138 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP-E-RFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR--PTELFDLIFD  138 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT-T-EEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC--CSSCEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC--CCCCeeEEEE
Confidence            4569999999999999998773 3 689999999999999999876421   2357999999988753  3468999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-... .+   -....+++. +++.|+|||.+++..
T Consensus       139 ~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          139 YVFFCAI-EP---EMRPAWAKS-MYELLKPDGELITLM  171 (235)
T ss_dssp             ESSTTTS-CG---GGHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ChhhhcC-CH---HHHHHHHHH-HHHHCCCCcEEEEEE
Confidence            7543221 11   123578888 799999999998754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.33  E-value=1.5e-12  Score=107.74  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++.+...+    .++++++.+|+.+.- ...++||+|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v  110 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG----LKNVEVLKSEENKIP-LPDNTVDFI  110 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECBTTBCS-SCSSCEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEecccccCC-CCCCCeeEE
Confidence            456899999999999999998863 44699999999999999999876542    248999999987642 235789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-...  +    ....+++. +.+.|+|||.+++..
T Consensus       111 ~~~~~l~~~--~----~~~~~l~~-~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          111 FMAFTFHEL--S----EPLKFLEE-LKRVAKPFAYLAIID  143 (219)
T ss_dssp             EEESCGGGC--S----SHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eeehhhhhc--C----CHHHHHHH-HHHHhCCCeEEEEEE
Confidence            997543221  1    12578898 799999999988753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.33  E-value=4.3e-12  Score=114.53  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      ++++|||+| |+|.++..+++..+..+|++||+|+.+++.|++++..++  +  .+++++.+|+.+.+.. ..++||+|+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~--~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--Y--EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--C--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C--CCEEEEEChhhhhchhhccCCccEEE
Confidence            468999999 999999999886443699999999999999999987553  1  2899999999885532 246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCc-EEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG-~l~~~~  219 (251)
                      +|++...    . .  ..++++. +.+.|+||| ++++..
T Consensus       247 ~~~p~~~----~-~--~~~~l~~-~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETL----E-A--IRAFVGR-GIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSH----H-H--HHHHHHH-HHHTBCSTTCEEEEEE
T ss_pred             ECCCCch----H-H--HHHHHHH-HHHHcccCCeEEEEEE
Confidence            9986322    1 1  2688998 799999999 334443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.33  E-value=4.9e-12  Score=103.59  Aligned_cols=100  Identities=8%  Similarity=0.030  Sum_probs=79.9

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||||||+|.++..+++. + .+|+++|+++.+++.+++.+         ++++++.+|+.++ ...+++||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-G-HQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-SDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-T-CCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-GGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-ccCCCCeEEEEeh
Confidence            789999999999999999886 3 48999999999999999862         4789999998874 3345899999997


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..-..  .+  .-....+++. ++++|+|||.+++..
T Consensus       110 ~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A          110 YSLIH--MG--PGELPDALVA-LRMAVEDGGGLLMSF  141 (203)
T ss_dssp             SSSTT--CC--TTTHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             hhHhc--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            54222  11  0123578898 799999999998765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.32  E-value=5e-12  Score=106.52  Aligned_cols=101  Identities=16%  Similarity=0.217  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++.            ++++.+|+.+++.. .+++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE-G-IESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH-T-CCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC-C-CcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEE
Confidence            45689999999999999998886 3 4799999999999999863            78899999998743 45789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++...-... ..   -....+++. ++++|||||.+++...
T Consensus       106 ~~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHL-DP---ERLFELLSL-CYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEESCGGGS-CG---GGHHHHHHH-HHHHBCTTCCEEEEEE
T ss_pred             EECCchhhC-Cc---HHHHHHHHH-HHHHcCCCcEEEEEeC
Confidence            997542211 10   012578998 7999999999988763

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.32  E-value=3.9e-12  Score=108.50  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++..  .+|+++|+++.+++.|++.+         ++++++.+|+.++..  +++||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN---------PDAVLHHGDMRDFSL--GRRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTCCC--SCCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC---------CCCEEEECChHHCCc--cCCcCEEE
Confidence            566899999999999999998863  58999999999999999863         378999999877432  57899999


Q ss_pred             EcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +.. .-+....+   -....+++. ++++|+|||.+++.
T Consensus       116 ~~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          116 CMFSSIGHLAGQ---AELDAALER-FAAHVLPDGVVVVE  150 (263)
T ss_dssp             ECTTGGGGSCHH---HHHHHHHHH-HHHTEEEEEEEEEC
T ss_pred             EcCchhhhcCCH---HHHHHHHHH-HHHhcCCCcEEEEE
Confidence            974 21110000   012467888 79999999999985

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.32  E-value=2.9e-12  Score=108.81  Aligned_cols=106  Identities=16%  Similarity=0.183  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++.+...      ++++++.+|+.+. ...+++||+|+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~  125 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGN------NKIIFEANDILTK-EFPENNFDLIY  125 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSC------TTEEEEECCTTTC-CCCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcC------CCeEEEECccccC-CCCCCcEEEEe
Confidence            4567999999999999999988643 69999999999999999876421      6899999998764 33357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. .+   -....+++. ++++|+|||.+++..
T Consensus       126 ~~~~l~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          126 SRDAILAL-SL---ENKNKLFQK-CYKWLKPTGTLLITD  159 (266)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             HHHHHHhc-Ch---HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            97542221 10   123578888 799999999998764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.32  E-value=2.4e-12  Score=114.71  Aligned_cols=101  Identities=16%  Similarity=0.183  Sum_probs=83.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++.. ++ . ..+|+++|+|+.+++.|++++..++   ..++++++.+|+++++    ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~s~~ai~~a~~n~~~n~---l~~~v~~~~~D~~~~~----~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDINPHAIELLKKNIKLNK---LEHKIIPILSDVREVD----VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-T-SSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCC----CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc-C-CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECChHHhc----CCCcEEE
Confidence            4678999999999999999 77 3 5799999999999999999988764   2358999999999876    7899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +|++..          ..++++. +.+.|+|||++++...++
T Consensus       264 ~dpP~~----------~~~~l~~-~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          264 MNLPKF----------AHKFIDK-ALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             ECCTTT----------GGGGHHH-HHHHEEEEEEEEEEEEES
T ss_pred             ECCcHh----------HHHHHHH-HHHHcCCCCEEEEEEeec
Confidence            997531          1267787 688999999988876443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.32  E-value=9.3e-13  Score=115.27  Aligned_cols=110  Identities=17%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCchHHHHHHH-hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|..+..++ ...+..+|+++|+++.+++.|++++...+   ...+++++.+|+.+.. . +++||+|
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~-~-~~~fD~v  191 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA---LAGQITLHRQDAWKLD-T-REGYDLL  191 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEECCGGGCC-C-CSCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECchhcCC-c-cCCeEEE
Confidence            567899999999999999985 33345799999999999999999876432   2357999999988752 2 3889999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++........+   -...++++. +++.|+|||++++..
T Consensus       192 ~~~~~~~~~~~~---~~~~~~l~~-~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDD---ARVTELYRR-FWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCH---HHHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCH---HHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            987542221011   112247898 799999999999865

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.32  E-value=4.9e-12  Score=114.36  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=82.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..++   ..++++++.+|+.++.  .+++||+|+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~Iv  134 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN---LDHIVEVIEGSVEDIS--LPEKVDVII  134 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT---CTTTEEEEESCGGGCC--CSSCEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC---CCCeEEEEECchhhcC--cCCcceEEE
Confidence            45689999999999999999987 44699999999 99999999887553   3467999999997763  237899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++..... .  ..-....+++. +.+.|+|||+++..
T Consensus       135 ~~~~~~~l-~--~e~~~~~~l~~-~~~~LkpgG~li~~  168 (376)
T 3r0q_C          135 SEWMGYFL-L--RESMFDSVISA-RDRWLKPTGVMYPS  168 (376)
T ss_dssp             ECCCBTTB-T--TTCTHHHHHHH-HHHHEEEEEEEESS
T ss_pred             EcChhhcc-c--chHHHHHHHHH-HHhhCCCCeEEEEe
Confidence            98743221 0  11123467887 68999999999753

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.32  E-value=8.1e-12  Score=105.59  Aligned_cols=106  Identities=9%  Similarity=0.078  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g---l~~~I~~~~gD~l~~~~~-~~~~D~Iv   95 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG---LTSKIDVRLANGLSAFEE-ADNIDTIT   95 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhcccc-ccccCEEE
Confidence            56689999999999999999997656789999999999999999988664   346899999999887632 24799988


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.       +... -.-.+++.. ..+.|+++|.|+++.
T Consensus        96 ia-------GmGg-~lI~~IL~~-~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           96 IC-------GMGG-RLIADILNN-DIDKLQHVKTLVLQP  125 (230)
T ss_dssp             EE-------EECH-HHHHHHHHH-TGGGGTTCCEEEEEE
T ss_pred             Ee-------CCch-HHHHHHHHH-HHHHhCcCCEEEEEC
Confidence            74       2211 123577888 689999999999875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.32  E-value=1.3e-12  Score=110.14  Aligned_cols=103  Identities=13%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|..+..+++..  .+|+++|+|+.+++.|++++...+   ..++++++++|+.++.  ..++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~--~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYG---IADKIEFICGDFLLLA--SFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHG--GGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcC---CCcCeEEEECChHHhc--ccCCCCEEEE
Confidence            57899999999999999999863  699999999999999999886542   1258999999999886  3478999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++......+.      ..+.. ++++|+|||.+++.
T Consensus       151 ~~~~~~~~~~~------~~~~~-~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          151 SPPWGGPDYAT------AETFD-IRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCCSSGGGGG------SSSBC-TTTSCSSCHHHHHH
T ss_pred             CCCcCCcchhh------hHHHH-HHhhcCCcceeHHH
Confidence            98743311111      12234 57889999986654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.32  E-value=5.9e-12  Score=103.39  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++... .+|+++|+++.+++.+++++..      .++++++.+|+.+. ...+++||+|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~v~  112 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-DFPSASFDVVL  112 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-CCCCCcccEEE
Confidence            5668999999999999999998743 4899999999999999988652      36899999998764 22357899999


Q ss_pred             EcCCC---------CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLAD---------PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~---------~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.+-         ++...+...-....+++. +.++|+|||++++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSE-VSRVLVPGGRFISMT  159 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHH-HHHhCcCCCEEEEEe
Confidence            86531         110000000012578888 799999999998875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.32  E-value=3.9e-12  Score=109.93  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||+|||+|.++..+++. + .+|++||+++.+++.|++++..++     .+++++.+|+.+...  .++||+|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g-~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-G-YDVTSWDHNENSIAFLNETKEKEN-----LNISTALYDINAANI--QENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCGGGCCC--CSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHcC-----CceEEEEeccccccc--cCCccEEEE
Confidence            6789999999999999999987 4 499999999999999999887542     289999999877532  678999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +..-+.. .+   -....+++. ++++|+|||.+++.
T Consensus       191 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~l~i~  222 (286)
T 3m70_A          191 TVVFMFL-NR---ERVPSIIKN-MKEHTNVGGYNLIV  222 (286)
T ss_dssp             CSSGGGS-CG---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccchhhC-CH---HHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8653221 11   123578898 79999999987654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.31  E-value=1.8e-12  Score=109.29  Aligned_cols=107  Identities=22%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...+    ..+++++.+|+.++. ...++||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC----CceEEEEEcChhhcC-CCCCCEEEEEE
Confidence            47899999999999999988764 4699999999999999999876431    247899999977643 23468999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..-+.  .+.  -....+++. ++++|+|||++++..
T Consensus       153 ~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          153 QWVIGH--LTD--QHLAEFLRR-CKGSLRPNGIIVIKD  185 (241)
T ss_dssp             ESCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cchhhh--CCH--HHHHHHHHH-HHHhcCCCeEEEEEE
Confidence            854221  110  002368888 799999999998743

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.31  E-value=5.5e-13  Score=113.41  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcc---cCCCCCCC-------------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPR-------------------  157 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~---~~~~~~~r-------------------  157 (251)
                      .+.+|||+|||+|.++..+++.  .+..+|+++|+|+.+++.|++++...   +   ...+                   
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG---LTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH---HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc---ccccchhhhhhhhhcccccchhh
Confidence            4679999999999999998875  33468999999999999999876432   1   0011                   


Q ss_pred             ------eE-------------EEEcchHHHHhc----CCCceeEEEEcCCCCCCCCccc---CCccHHHHHHHHcccCCC
Q 025534          158 ------LE-------------LVINDARAELES----RKESYDVIIGDLADPIEGGPCY---KLYTKSFYEFVVKPRLNP  211 (251)
Q Consensus       158 ------v~-------------~~~~D~~~~l~~----~~~~fD~Ii~D~~~~~~~~p~~---~l~~~ef~~~~~~~~L~p  211 (251)
                            ++             ++.+|+.+....    ..++||+|+++++.........   .-....+++. +.++|+|
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~-~~~~Lkp  206 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS-LASALPA  206 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH-HHHHSCT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH-HHHhcCC
Confidence                  56             999998875421    3358999999976321000000   0112478888 7999999


Q ss_pred             CcEEEE
Q 025534          212 EGIFVT  217 (251)
Q Consensus       212 gG~l~~  217 (251)
                      ||++++
T Consensus       207 gG~l~~  212 (250)
T 1o9g_A          207 HAVIAV  212 (250)
T ss_dssp             TCEEEE
T ss_pred             CcEEEE
Confidence            999987

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.31  E-value=2.8e-12  Score=111.29  Aligned_cols=107  Identities=16%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...+   ..++++++.+|+.+. ...+++||+|+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  155 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFIW  155 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEEcCcccC-CCCCCCEeEEE
Confidence            4568999999999999999988643 499999999999999999875432   246899999998763 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-..  .+    ....+++. ++++|||||.+++..
T Consensus       156 ~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLH--SP----DKLKVFQE-CARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ecchhhh--cC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            8754221  11    03578898 799999999988764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.31  E-value=4.4e-12  Score=115.23  Aligned_cols=104  Identities=23%  Similarity=0.199  Sum_probs=86.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCC-eEEEEcchHHHHh-cCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELE-SRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~~~~~D~~~~l~-~~~~~fD~  178 (251)
                      ++.+|||++||+|.++.++++. .++.+|++||+|+..++.+++++..++   ...+ ++++.+|+++++. ...++||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng---l~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN---IPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            4579999999999999998885 345789999999999999999998875   2345 9999999999997 65678999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++|++.    .+      .++++. +.+.|+|||++.+.+
T Consensus       129 V~lDP~g----~~------~~~l~~-a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDPFG----TP------VPFIES-VALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEECCCc----CH------HHHHHH-HHHHhCCCCEEEEEe
Confidence            9999841    11      368887 688899999888754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.31  E-value=7.7e-12  Score=109.77  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++.+...+   ..++++++.+|+.++    +++||+|+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  160 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV  160 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChHHC----CCCcCEEE
Confidence            4567999999999999999988633 599999999999999999876432   236799999998654    37899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-... .+   -...++++. +.++|+|||++++..
T Consensus       161 ~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          161 SIEAFEHF-GH---ENYDDFFKR-CFNIMPADGRMTVQS  194 (318)
T ss_dssp             EESCGGGT-CG---GGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeChHHhc-CH---HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            87532110 10   123578898 799999999998865

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.31  E-value=4.4e-12  Score=113.55  Aligned_cols=107  Identities=17%  Similarity=0.253  Sum_probs=82.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||||||+|.++..+++. +..+|++||+++ +++.|++++..++   ..++++++.+|+.+. ....++||+|++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~Iis  139 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIIIS  139 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC---CCCcEEEEECcHHHc-cCCCCceEEEEE
Confidence            5689999999999999999987 456999999995 9999999887553   346799999998876 223479999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +......  . ..-....+++. +.+.|+|||+++..
T Consensus       140 ~~~~~~l--~-~~~~~~~~l~~-~~r~LkpgG~li~~  172 (349)
T 3q7e_A          140 EWMGYCL--F-YESMLNTVLHA-RDKWLAPDGLIFPD  172 (349)
T ss_dssp             CCCBBTB--T-BTCCHHHHHHH-HHHHEEEEEEEESC
T ss_pred             ccccccc--c-CchhHHHHHHH-HHHhCCCCCEEccc
Confidence            8642211  0 11123467787 68999999998743

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.31  E-value=9.7e-12  Score=105.96  Aligned_cols=106  Identities=11%  Similarity=0.113  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ...+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~I~v~~gD~l~~~~~-~~~~D~Iv   95 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG---LTEQIDVRKGNGLAVIEK-KDAIDTIV   95 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEecchhhccCc-cccccEEE
Confidence            56689999999999999999987556789999999999999999987664   246899999999887632 23699998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.       +... -.-.+++.. ..++|+++|.|+++.
T Consensus        96 ia-------gmGg-~lI~~IL~~-~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           96 IA-------GMGG-TLIRTILEE-GAAKLAGVTKLILQP  125 (244)
T ss_dssp             EE-------EECH-HHHHHHHHH-TGGGGTTCCEEEEEE
T ss_pred             Ee-------CCch-HHHHHHHHH-HHHHhCCCCEEEEEc
Confidence            74       2111 123577888 689999999999975

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.31  E-value=7.4e-12  Score=106.10  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=93.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD  177 (251)
                      .++.+|||+|||+|.++..+++. .+..+|++||+++++++.+++...      ..+++..+.+|+...-.  ...+.+|
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~------~~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR------DRRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST------TCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH------hhcCeeEEEEeccCccccccccceEE
Confidence            45689999999999999999986 445799999999999999988754      23689999999876432  2347899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCC--C-CCChHHHHHHHHHHHhh-CC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG--I-FSHTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~--~-~~~~~~~~~i~~~l~~~-F~  243 (251)
                      +|++|.+.++  .      ...++.. +++.|||||.+++-....+  . ......+++..+.|++. |.
T Consensus       150 vVf~d~~~~~--~------~~~~l~~-~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~  210 (233)
T 4df3_A          150 GLYADVAQPE--Q------AAIVVRN-ARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLE  210 (233)
T ss_dssp             EEEECCCCTT--H------HHHHHHH-HHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCC
T ss_pred             EEEEeccCCh--h------HHHHHHH-HHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCE
Confidence            9999977553  1      2467888 7999999999886421100  0 01234567777777765 54

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.31  E-value=3.7e-12  Score=107.05  Aligned_cols=104  Identities=19%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~~~~~~fD  177 (251)
                      .+..+|||+|||+|.++..+++.. +..+|++||+++.+++.+.+....+      ++++++.+|+.+..  ....++||
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhhcccCCcEE
Confidence            346799999999999999999862 3469999999999877776655432      57999999998742  22357899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++|.+.+.        ....+++. +.+.|+|||++++..
T Consensus       150 ~V~~~~~~~~--------~~~~~~~~-~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          150 VIFADVAQPD--------QTRIVALN-AHTFLRNGGHFVISI  182 (233)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCcc--------HHHHHHHH-HHHHcCCCeEEEEEE
Confidence            9999876321        12356777 689999999998854

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.30  E-value=4e-12  Score=115.04  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhccc----CCCCCCCeEEEEcchHHHH-----h
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNK----EAFSDPRLELVINDARAEL-----E  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~----~~~~~~rv~~~~~D~~~~l-----~  170 (251)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++....    +.+..++++++.+|+.+..     .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999998862 34699999999999999999875321    0023478999999988752     2


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..+++||+|+++..-+..  +    ....+++. ++++|||||.+++..
T Consensus       162 ~~~~~fD~V~~~~~l~~~--~----d~~~~l~~-~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLS--T----NKLALFKE-IHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcC--C----CHHHHHHH-HHHHcCCCCEEEEEE
Confidence            234789999998653321  1    12578898 799999999998753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.30  E-value=1.4e-12  Score=110.96  Aligned_cols=81  Identities=10%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcC----CCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESR----KESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~----~~~f  176 (251)
                      ++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++   ..++++++++|+.+ +....    +++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC---CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            4679999999999999888875333699999999999999999987543   23579999999765 22211    2589


Q ss_pred             eEEEEcCCC
Q 025534          177 DVIIGDLAD  185 (251)
Q Consensus       177 D~Ii~D~~~  185 (251)
                      |+|++|+|.
T Consensus       142 D~i~~npp~  150 (254)
T 2h00_A          142 DFCMCNPPF  150 (254)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.29  E-value=8.6e-12  Score=104.64  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++..       ..++++++.+|+.+. ...+++||+|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~-~~~~~~fD~v~  121 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT-G-YKAVGVDISEVMIQKGKERG-------EGPDLSFIKGDLSSL-PFENEQFEAIM  121 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHTTT-------CBTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhc-------ccCCceEEEcchhcC-CCCCCCccEEE
Confidence            46789999999999999999987 3 58999999999999999874       236899999998764 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+....      ...+++. ++++|+|||.+++..
T Consensus       122 ~~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          122 AINSLEWTEE------PLRALNE-IKRVLKSDGYACIAI  153 (242)
T ss_dssp             EESCTTSSSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChHhhccC------HHHHHHH-HHHHhCCCeEEEEEE
Confidence            8754322111      2478888 799999999998865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.29  E-value=7e-12  Score=105.12  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++. +..+++++|+++.+++.+++.+.       .++++++.+|+.+.. ...++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~-~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP-------DTGITYERADLDKLH-LPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC-------SSSEEEEECCGGGCC-CCTTCEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc-------cCCceEEEcChhhcc-CCCCCceEEE
Confidence            35689999999999999999886 33499999999999999998753       247999999987742 2357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.  .+    ....+++. ++++|+|||.+++..
T Consensus       113 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHY--VE----DVARLFRT-VHQALSPGGHFVFST  144 (243)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eeccccc--cc----hHHHHHHH-HHHhcCcCcEEEEEe
Confidence            8754222  11    13578888 799999999998754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=1.1e-11  Score=106.74  Aligned_cols=100  Identities=19%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++ ++ .+|+++|+++.+++.+++.+         ++++++.+|+.++ . .+++||+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~-~~~~fD~v~  122 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SG-AEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF-R-VDKPLDAVF  122 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC-C-CSSCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CC-CeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC-C-cCCCcCEEE
Confidence            4568999999999999999988 33 69999999999999999863         4788999998774 2 257899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...-++...      ...+++. ++++|+|||.+++...
T Consensus       123 ~~~~l~~~~d------~~~~l~~-~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          123 SNAMLHWVKE------PEAAIAS-IHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred             EcchhhhCcC------HHHHHHH-HHHhcCCCcEEEEEec
Confidence            9764322111      2478888 7999999999988653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=3.5e-12  Score=106.77  Aligned_cols=92  Identities=16%  Similarity=0.323  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I  179 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.++++         .++++++++|+.+.+... +++||+|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ-A-ARWAAYDFSPELLKLARAN---------APHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-S-SEEEEEESCHHHHHHHHHH---------CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHh---------CCCceEEEcchhhccCCcCCCCEEEE
Confidence            46789999999999999999987 3 5999999999999999987         257999999986555434 5789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ++..      .+.      .+++. ++++|+|||+++
T Consensus       116 ~~~~------~~~------~~l~~-~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSRR------GPT------SVILR-LPELAAPDAHFL  139 (226)
T ss_dssp             EEES------CCS------GGGGG-HHHHEEEEEEEE
T ss_pred             EeCC------CHH------HHHHH-HHHHcCCCcEEE
Confidence            9982      121      34566 689999999998

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.29  E-value=1.5e-11  Score=105.25  Aligned_cols=118  Identities=15%  Similarity=0.155  Sum_probs=89.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++.. . +|+++|+|+.+++.|++++..++    .. ++++.+|+.+.+.  .++||+|+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g-~-~v~gvDi~~~~v~~a~~n~~~~~----~~-v~~~~~d~~~~~~--~~~fD~Vv  189 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDIDPMVLPQAEANAKRNG----VR-PRFLEGSLEAALP--FGPFDLLV  189 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEESCGGGHHHHHHHHHHTT----CC-CEEEESCHHHHGG--GCCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC-C-eEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChhhcCc--CCCCCEEE
Confidence            457899999999999999988863 3 99999999999999999987653    12 8999999988653  46899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~  243 (251)
                      ++...+       .  ..++++. +.++|+|||.+++....      ......+.+.+++. |.
T Consensus       190 ~n~~~~-------~--~~~~l~~-~~~~LkpgG~lils~~~------~~~~~~v~~~l~~~Gf~  237 (254)
T 2nxc_A          190 ANLYAE-------L--HAALAPR-YREALVPGGRALLTGIL------KDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             EECCHH-------H--HHHHHHH-HHHHEEEEEEEEEEEEE------GGGHHHHHHHHHHTTCE
T ss_pred             ECCcHH-------H--HHHHHHH-HHHHcCCCCEEEEEeec------cCCHHHHHHHHHHCCCE
Confidence            985421       1  2478888 79999999999885421      12244556666655 44

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.29  E-value=3.7e-12  Score=110.92  Aligned_cols=110  Identities=16%  Similarity=0.200  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|||||||+|.++..+++. + .+|++||+++.+++.|++++...+.. ...+++++.+|+.++-  .+++||+|+
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~fD~v~  155 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDL-G-WEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMSAFA--LDKRFGTVV  155 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTT-T-CCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTTBCC--CSCCEEEEE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchhcCC--cCCCcCEEE
Confidence            44569999999999999999986 3 58999999999999999987632100 0158999999988742  257899998


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +... .+.. .+   -....+++. ++++|+|||++++...
T Consensus       156 ~~~~~~~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          156 ISSGSINEL-DE---ADRRGLYAS-VREHLEPGGKFLLSLA  191 (299)
T ss_dssp             ECHHHHTTS-CH---HHHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred             ECCcccccC-CH---HHHHHHHHH-HHHHcCCCcEEEEEee
Confidence            6421 1110 11   012578888 7999999999998763

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.29  E-value=4.7e-12  Score=100.81  Aligned_cols=97  Identities=18%  Similarity=0.084  Sum_probs=77.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..  .+++++|+++.+++.++++         .++++++.+|    +....++||+|+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------~~~v~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---------FDSVITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---------CTTSEEESSG----GGSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---------CCCcEEEeCC----CCCCCCceEEEE
Confidence            456799999999999999999864  3999999999999999986         2589999999    333457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-...  +    ....+++. +++.|+|||.+++..
T Consensus        81 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           81 FANSFHDM--D----DKQHVISE-VKRILKDDGRVIIID  112 (170)
T ss_dssp             EESCSTTC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eccchhcc--c----CHHHHHHH-HHHhcCCCCEEEEEE
Confidence            88653321  1    13578888 799999999998753

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.29  E-value=1e-11  Score=112.51  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=85.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC-------------CCCCCCeEEEEcchHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-------------AFSDPRLELVINDARAE  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-------------~~~~~rv~~~~~D~~~~  168 (251)
                      ++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.+++++..+..             .+  .+++++++|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence            57899999999999999998864446899999999999999999886610             11  2399999999999


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....++||+|++|++.    .      ..+|++. +.+.|++||++.+.+
T Consensus       125 ~~~~~~~fD~I~lDP~~----~------~~~~l~~-a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFG----S------PMEFLDT-ALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHSTTCEEEEEECCSS----C------CHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCCCC----C------HHHHHHH-HHHhcCCCCEEEEEe
Confidence            86555689999999752    1      1478888 688999999887753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.29  E-value=5.8e-12  Score=106.88  Aligned_cols=104  Identities=19%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++. + .+|+++|+++.+++.+++++. .    ..++++++.+|+.+. ...+++||+|+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~~~~d~~~~-~~~~~~fD~v~  109 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-G-YRYIALDADAAMLEVFRQKIA-G----VDRKVQVVQADARAI-PLPDESVHGVI  109 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-T-CEEEEEESCHHHHHHHHHHTT-T----SCTTEEEEESCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhh-c----cCCceEEEEcccccC-CCCCCCeeEEE
Confidence            45689999999999999999886 3 689999999999999999872 1    247899999998653 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-++.  +    ....+++. ++++|+|||.+++..
T Consensus       110 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          110 VVHLWHLV--P----DWPKVLAE-AIRVLKPGGALLEGW  141 (263)
T ss_dssp             EESCGGGC--T----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchhhc--C----CHHHHHHH-HHHHCCCCcEEEEEe
Confidence            97543321  1    13578888 799999999988763

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.29  E-value=6.4e-12  Score=103.13  Aligned_cols=107  Identities=17%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||+|||+|..+..++...+ .+|+++|+++.+++.|++++...     .++++++.+|+.+. ...+++||+|+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~fD~v~   94 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSREN-----NFKLNISKGDIRKL-PFKDESMSFVY   94 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHH-----TCCCCEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEECchhhC-CCCCCceeEEE
Confidence            4568999999999997444444344 59999999999999999987643     25789999998763 22357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. .+   -....+++. ++++|+|||++++..
T Consensus        95 ~~~~l~~~-~~---~~~~~~l~~-~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           95 SYGTIFHM-RK---NDVKEAIDE-IKRVLKPGGLACINF  128 (209)
T ss_dssp             ECSCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChHHhC-CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            86431110 00   113578888 799999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.28  E-value=2.3e-11  Score=112.51  Aligned_cols=116  Identities=9%  Similarity=0.033  Sum_probs=87.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++. .+..+|+++|+|+..++.+++++...+    -.+++++.+|+.++....+++||+|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g----~~nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG----VSNAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT----CSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhhhccccCCEE
Confidence            45689999999999999988875 334699999999999999999987553    2479999999998764445789999


Q ss_pred             EEcCCCCCC----CCcc-------cC-----CccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPC-------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~-------~~-----l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|+|....    ..|.       ..     -...++++. +.+.|||||+++..+++
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS-AIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHH-HHHTEEEEEEEEEEESC
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEEee
Confidence            999974211    0110       00     012367887 68999999999877654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.28  E-value=1.8e-12  Score=109.22  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=78.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECC-hHHHHHH---HhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID-EEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~a---~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      .++.+|||||||+|.++..+++..+..+|++||++ +.|++.|   +++....    ..++++++.+|+.++-....+.+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~----~~~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG----GLSNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----CCSSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEcCHHHhhhhccCeE
Confidence            45678999999999999999865445789999999 7777776   7765433    23579999999887622123668


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |.|.++.+.+.. .........+++++ ++++|||||.+++
T Consensus        99 ~~i~~~~~~~~~-~~~~~~~~~~~l~~-~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTL-LEYVIKPNRDILSN-VADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHH-HHHHHTTCHHHHHH-HHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHH-hhhhhcchHHHHHH-HHHhcCCCcEEEE
Confidence            888877542210 00001123578898 7999999999988

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.28  E-value=3.5e-12  Score=110.20  Aligned_cols=112  Identities=14%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++.+ ..+|+++|+++.+++.|++++...+   ...+++++.+|+.+.-...+++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC---CCccEEEEECCccccccCCCCCcCEEE
Confidence            567899999999999988888764 4599999999999999999876432   235799999998765211357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.....  .-...++++. ++++|+|||.+++..
T Consensus       139 ~~~~l~~~~~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          139 SQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV  174 (298)
T ss_dssp             EESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ECchhhhhcCC--HHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            98542210000  0112578888 799999999998765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.28  E-value=8.5e-12  Score=110.05  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++..+ ..+|+++|+++++++.|++++...+    .++++++.+|+.+.+. ..++||+|
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I  148 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVP-EFSPYDVI  148 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEECChhhccc-cCCCeEEE
Confidence            4568999999999999999988643 3579999999999999999886542    2469999999987543 24689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +++...+.       +.     +. +.+.|||||++++...+
T Consensus       149 v~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          149 FVTVGVDE-------VP-----ET-WFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EECSBBSC-------CC-----HH-HHHHEEEEEEEEEEBCB
T ss_pred             EEcCCHHH-------HH-----HH-HHHhcCCCcEEEEEECC
Confidence            99965332       11     35 57899999999987643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.28  E-value=7.5e-12  Score=105.74  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++.. ..+|+++|+++.+++.+++++..      .++++++.+|+.+. ....++||+|+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~-~~~~~~fD~v~  163 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETA-TLPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEccHHHC-CCCCCCeEEEE
Confidence            356899999999999999988764 46899999999999999998652      25799999998764 23357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.  -+.  -....+++. ++++|+|||++++..
T Consensus       164 ~~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          164 IQWTAIY--LTD--ADFVKFFKH-CQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Ecchhhh--CCH--HHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            8754211  110  012578888 799999999988754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.28  E-value=3e-12  Score=114.23  Aligned_cols=108  Identities=20%  Similarity=0.258  Sum_probs=83.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.+++++..++     .+++++.+|+.++.   .++||+|++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Iv~  267 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-----VEGEVFASNVFSEV---KGRFDMIIS  267 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTC---CSCEEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCEEEEccccccc---cCCeeEEEE
Confidence            4579999999999999999887544599999999999999999887542     34688999987653   568999999


Q ss_pred             cCCCCCCCCcc-cCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +++.+.  +.. ..-...++++. ++++|+|||.+++...
T Consensus       268 ~~~~~~--g~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          268 NPPFHD--GMQTSLDAAQTLIRG-AVRHLNSGGELRIVAN  304 (343)
T ss_dssp             CCCCCS--SSHHHHHHHHHHHHH-HGGGEEEEEEEEEEEE
T ss_pred             CCCccc--CccCCHHHHHHHHHH-HHHhCCCCcEEEEEEc
Confidence            986443  110 00113578898 7999999999987653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.28  E-value=1.4e-11  Score=109.88  Aligned_cols=106  Identities=18%  Similarity=0.155  Sum_probs=80.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||||||+|.++..+++. +..+|++||+++ +++.|++++..++   ..++++++.+|+.++ ....++||+|+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Iv  136 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK---LEDTITLIKGKIEEV-HLPVEKVDVII  136 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC---CCCcEEEEEeeHHHh-cCCCCcEEEEE
Confidence            45689999999999999999987 446999999997 9999999876543   236899999998875 22347899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      ++...... .  .......++.. +++.|+|||+++
T Consensus       137 s~~~~~~l-~--~~~~~~~~l~~-~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYFL-L--FESMLDSVLYA-KNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTTB-T--TTCHHHHHHHH-HHHHEEEEEEEE
T ss_pred             EcCchhhc-c--CHHHHHHHHHH-HHhhcCCCcEEE
Confidence            98631110 0  01112467787 689999999987

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.28  E-value=1e-11  Score=104.08  Aligned_cols=106  Identities=13%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+++++|+++.+++.+++++...+     .+++++.+|+.++.  ..++||+|+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~--~~~~fD~v~  106 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK-F-KNTWAVDLSQEMLSEAENKFRSQG-----LKPRLACQDISNLN--INRKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG-S-SEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECCCGGGCC--CSCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC-C-CcEEEEECCHHHHHHHHHHHhhcC-----CCeEEEecccccCC--ccCCceEEE
Confidence            36789999999999999999886 3 589999999999999999876432     37999999987752  237899999


Q ss_pred             EcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.. .-+....+   -...++++. ++++|+|||++++..
T Consensus       107 ~~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          107 CCLDSTNYIIDS---DDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             ECTTGGGGCCSH---HHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             EcCccccccCCH---HHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            974 32110010   113578888 799999999999854

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.27  E-value=2.6e-11  Score=97.38  Aligned_cols=99  Identities=15%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++..   +|++||+|+.+++.             .++++++.+|+.+.+.  +++||+|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------------~~~~~~~~~d~~~~~~--~~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------------HRGGNLVRADLLCSIN--QESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------------CSSSCEEECSTTTTBC--GGGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------------ccCCeEEECChhhhcc--cCCCCEEE
Confidence            356799999999999999998863   99999999999987             1468999999987442  37899999


Q ss_pred             EcCCCCCCCCcc---cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~---~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++++......+.   ......++++. +.+.| |||.+++..
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDR-FVDAV-TVGMLYLLV  123 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHH-HHHHC-CSSEEEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHH-HHhhC-CCCEEEEEE
Confidence            998643211110   00112357777 56677 999998754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.27  E-value=6.6e-12  Score=108.64  Aligned_cols=114  Identities=8%  Similarity=0.076  Sum_probs=81.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~I  179 (251)
                      ++.+|||||||+|..+..+++. + .+|+++|+|+.+++.|+++..........+++.+..+|+.+...  ...++||+|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            5689999999999999999986 3 49999999999999999875321100012578999999887642  235789999


Q ss_pred             EEc--CCCCCCCCc-ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGD--LADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D--~~~~~~~~p-~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.  ...+.. .+ ...-....+++. ++++|+|||++++..
T Consensus       135 ~~~g~~l~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          135 ICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH  175 (293)
T ss_dssp             EECTTCGGGSC-CSSSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEcChHHhhcC-ccccCHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            995  332221 10 000113578898 799999999998764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.27  E-value=1.5e-11  Score=102.34  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++++...+. .....+++++.+|+... ....++||+|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-G-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence            46789999999999999999987 3 5999999999999999998754321 01124789999998764 2335789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-.....+   .....+++. ++++|+|||.+++..
T Consensus       106 ~~~~~l~~~~~~---~~~~~~l~~-~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          106 VMQAFLTSVPDP---KERSRIIKE-VFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEESCGGGCCCH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcchhhcCCCH---HHHHHHHHH-HHHHcCCCeEEEEEE
Confidence            997542211011   111268888 799999999998764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.27  E-value=2e-11  Score=103.46  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD  177 (251)
                      .++.+|||+|||+|..+..+++. .+..+|++||+++.+++...+....      .++++++.+|++....  ...++||
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhhccccceE
Confidence            35689999999999999988875 3346999999999886544332211      2579999999875321  1246899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCC---CCCChHHHHHHHHHHHh
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~---~~~~~~~~~~i~~~l~~  240 (251)
                      +|++|.+.+.        ...-+... +++.|||||.+++..-+++   .....+.+....+.|++
T Consensus       149 ~I~~d~a~~~--------~~~il~~~-~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~  205 (232)
T 3id6_C          149 VLYVDIAQPD--------QTDIAIYN-AKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLEN  205 (232)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHH
T ss_pred             EEEecCCChh--------HHHHHHHH-HHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHH
Confidence            9999976432        11223344 4669999999987643222   11122334556666665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.26  E-value=1.9e-10  Score=94.35  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++..++     .+++++.+|+.++    +++||+|+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~----~~~~D~v~  117 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-----GKFKVFIGDVSEF----NSRVDIVI  117 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-----TSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECchHHc----CCCCCEEE
Confidence            35689999999999999999886 34589999999999999999887542     2799999998874    35899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|++.....    .-....+++. +.+.|  |+++++.
T Consensus       118 ~~~p~~~~~----~~~~~~~l~~-~~~~l--~~~~~~~  148 (207)
T 1wy7_A          118 MNPPFGSQR----KHADRPFLLK-AFEIS--DVVYSIH  148 (207)
T ss_dssp             ECCCCSSSS----TTTTHHHHHH-HHHHC--SEEEEEE
T ss_pred             EcCCCcccc----CCchHHHHHH-HHHhc--CcEEEEE
Confidence            998743311    1224577887 67777  6666554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.26  E-value=1.1e-11  Score=101.31  Aligned_cols=100  Identities=16%  Similarity=0.227  Sum_probs=78.8

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +|||||||+|..+..+++. + .+|+++|+++.+++.|++++...+     .+++++.+|+.+. ....++||+|++...
T Consensus        32 ~vLdiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL-G-YEVTAVDQSSVGLAKAKQLAQEKG-----VKITTVQSNLADF-DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECCBTTTB-SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcC-----CceEEEEcChhhc-CCCcCCccEEEEEhh
Confidence            9999999999999999886 3 599999999999999999876432     3799999998764 223478999998532


Q ss_pred             CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +.  .+   -...++++. +++.|+|||.+++..
T Consensus       104 -~~--~~---~~~~~~l~~-~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 -HL--PS---SLRQQLYPK-VYQGLKPGGVFILEG  131 (202)
T ss_dssp             -CC--CH---HHHHHHHHH-HHTTCCSSEEEEEEE
T ss_pred             -cC--CH---HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence             21  11   113578888 799999999998865

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.26  E-value=2.7e-11  Score=108.36  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+..++   ..++++++.+|+.+.  ..+++||+|++
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---l~~~v~~~~~d~~~~--~~~~~~D~Ivs  122 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIIIS  122 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC---CCCcEEEEEcchhhC--CCCCceeEEEE
Confidence            5689999999999999999886 456999999997 7899998876543   236899999998764  22468999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +........    -...+.+.. +++.|+|||++++.
T Consensus       123 ~~~~~~~~~----~~~~~~l~~-~~~~LkpgG~li~~  154 (348)
T 2y1w_A          123 EPMGYMLFN----ERMLESYLH-AKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCBTTBTT----TSHHHHHHH-GGGGEEEEEEEESC
T ss_pred             eCchhcCCh----HHHHHHHHH-HHhhcCCCeEEEEe
Confidence            865221001    112467777 69999999999854

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.25  E-value=1.9e-11  Score=105.03  Aligned_cols=114  Identities=12%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-------CC-----CcEEEEEECCh---HHHH-----------HHHhchhc-cc----
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-------KT-----VEKVVMCDIDE---EVVE-----------FCKSYLVV-NK----  150 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-------~~-----~~~v~~VEid~---~vi~-----------~a~~~~~~-~~----  150 (251)
                      ++.+||+||+|+|..+..+++.       .+     ..+++++|.+|   +.+.           .|++.+.. +.    
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4578999999999987765542       22     24899999987   3333           45554321 00    


Q ss_pred             ---CCCCC--CCeEEEEcchHHHHhcCCC----ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          151 ---EAFSD--PRLELVINDARAELESRKE----SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       151 ---~~~~~--~rv~~~~~D~~~~l~~~~~----~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                         ..+.+  .+++++.+|+++.+.....    .||+|++|++.|.. .|  .+++.++++. +.++|+|||++++.+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p--~lw~~~~l~~-l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFT  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CG--GGCCHHHHHH-HHHHEEEEEEEEESC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-Ch--hhcCHHHHHH-HHHHcCCCcEEEEEe
Confidence               00122  4678999999999876543    79999999986652 33  6889999999 899999999999754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.25  E-value=8.7e-12  Score=104.55  Aligned_cols=104  Identities=18%  Similarity=0.209  Sum_probs=80.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++..+|||+|||+|.++..+++.   .+++++|+++.+++.|++++...     .++++++.+|+.+..  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~  101 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET-----NRHVDFWVQDMRELE--LPEPVDAIT  101 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCGGGCC--CSSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc-----CCceEEEEcChhhcC--CCCCcCEEE
Confidence            34589999999999999998875   58999999999999999987643     257999999987752  237899999


Q ss_pred             EcC--CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDL--ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~--~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..  ..+.. .+   -....+++. ++++|+|||++++..
T Consensus       102 ~~~~~~~~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          102 ILCDSLNYLQ-TE---ADVKQTFDS-AARLLTDGGKLLFDV  137 (243)
T ss_dssp             ECTTGGGGCC-SH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCchhhcC-CH---HHHHHHHHH-HHHhcCCCeEEEEEc
Confidence            864  21110 00   112467888 799999999999854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.25  E-value=1.4e-11  Score=108.15  Aligned_cols=113  Identities=10%  Similarity=0.091  Sum_probs=75.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC--CCCeEEEEcch------HHHHh-cC
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDA------RAELE-SR  172 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--~~rv~~~~~D~------~~~l~-~~  172 (251)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|+++....+....  ..+++++++|.      .+... ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4689999999999866555554 346899999999999999998653210000  01366777776      32221 13


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .++||+|++...-+....+ .+  ...+++. ++++|||||++++.+
T Consensus       127 ~~~FD~V~~~~~lhy~~~~-~~--~~~~l~~-~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHP-RH--YATVMNN-LSELTASGGKVLITT  169 (302)
T ss_dssp             SSCEEEEEEESCGGGTCST-TT--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCH-HH--HHHHHHH-HHHHcCCCCEEEEEe
Confidence            4789999986532211011 12  2588999 799999999998764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=2.1e-11  Score=100.74  Aligned_cols=103  Identities=19%  Similarity=0.160  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++.. +..+|+++|+++.+++.+++++...+    .++++++.+|+...+. ..++||+|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~v  150 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG----YDNVIVIVGDGTLGYE-PLAPYDRI  150 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-CCCCeeEE
Confidence            456799999999999999998864 23699999999999999999876432    2469999999865432 24689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +++...+.       +.     +. +.+.|+|||++++...+
T Consensus       151 ~~~~~~~~-------~~-----~~-~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          151 YTTAAGPK-------IP-----EP-LIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EESSBBSS-------CC-----HH-HHHTEEEEEEEEEEESS
T ss_pred             EECCchHH-------HH-----HH-HHHHcCCCcEEEEEECC
Confidence            99865322       11     35 68899999999987643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.25  E-value=1.2e-11  Score=104.51  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|..+..+++. + .+|+++|+++.+++.|++++...     ..+++++.+|+.+..  ..++||+|+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~v~  110 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER-G-YEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAVT  110 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhc-----CCceEEEECChhhcc--cCCCccEEE
Confidence            35689999999999999999886 3 58999999999999999987643     247999999988742  246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.........+   -....+++. ++++|+|||++++..
T Consensus       111 ~~~~~~~~~~~---~~~~~~l~~-~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          111 MFFSTIMYFDE---EDLRKLFSK-VAEALKPGGVFITDF  145 (252)
T ss_dssp             ECSSGGGGSCH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCCchhcCCH---HHHHHHHHH-HHHHcCCCeEEEEec
Confidence            85321100010   112468888 799999999998754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=1.1e-11  Score=104.56  Aligned_cols=105  Identities=9%  Similarity=0.019  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC----CCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~----~~~f  176 (251)
                      .++.+|||||||+|..+..+++...  +|++||+|+.+++.|++++.       ..+++++.+|+.+.-...    ...|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccCc
Confidence            4567899999999999999998743  89999999999999998762       248999999987753221    1349


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|++....+.. .+   -....+++. ++++|+|||.+++..
T Consensus       126 d~v~~~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          126 ANIYMRTGFHHI-PV---EKRELLGQS-LRILLGKQGAMYLIE  163 (245)
T ss_dssp             CEEEEESSSTTS-CG---GGHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred             cEEEEcchhhcC-CH---HHHHHHHHH-HHHHcCCCCEEEEEe
Confidence            999998654331 11   123578898 799999999866543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.25  E-value=1.2e-11  Score=103.54  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC------cEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~  173 (251)
                      .+..+|||||||+|..+..+++..+.      .+|+++|+++.+++.|++++...+. .+..++++++.+|+.+.+.. .
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  161 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  161 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-C
Confidence            34579999999999999988875331      4899999999999999998753210 00025799999999874322 3


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ++||+|+++...+.       +     .+. +.+.|+|||++++..+++
T Consensus       162 ~~fD~I~~~~~~~~-------~-----~~~-~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          162 APYNAIHVGAAAPD-------T-----PTE-LINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             CSEEEEEECSCBSS-------C-----CHH-HHHTEEEEEEEEEEESCS
T ss_pred             CCccEEEECCchHH-------H-----HHH-HHHHhcCCCEEEEEEecC
Confidence            68999999865322       1     145 678999999999987654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.25  E-value=8.9e-12  Score=102.75  Aligned_cols=100  Identities=18%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++.+          +++++.+|+.+.-  ..++||+|+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~--~~~~fD~v~  107 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA-G-FDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD--AIDAYDAVW  107 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC--CCSCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc-C-CeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC--CCCcEEEEE
Confidence            45689999999999999999986 3 59999999999999999875          3567788876643  468999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-..  .+.  -....+++. ++++|+|||++++..
T Consensus       108 ~~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          108 AHACLLH--VPR--DELADVLKL-IWRALKPGGLFYASY  141 (211)
T ss_dssp             ECSCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ecCchhh--cCH--HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            9754221  110  012468888 799999999998865

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.25  E-value=2.5e-11  Score=107.63  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=80.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||||||+|.++..+++. +..+|++||++ .+++.|++.+..++   ..++++++.+|+.+. ....++||+|++
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Ivs  111 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC---CCCCEEEEECchhhc-cCCCCcccEEEE
Confidence            5689999999999999999886 45699999999 58999999876543   246899999998775 223478999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +......  . ..-....++.. +++.|+|||+++.
T Consensus       112 ~~~~~~l--~-~~~~~~~~l~~-~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFL--L-YESMMDTVLYA-RDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTB--S-TTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             eCchhhc--c-cHHHHHHHHHH-HHhhcCCCeEEEE
Confidence            8653211  0 01112467777 6899999999973

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=6.1e-11  Score=110.45  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=87.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+    -++++++.+|+.++.....++||+|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g----~~nv~~~~~D~~~~~~~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG----ISNVALTHFDGRVFGAAVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHhhhhccccCCEEE
Confidence            56899999999999999998863 33689999999999999999987543    24799999999887543457899999


Q ss_pred             EcCCCCCC----CCccc-CCc-----------cHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          181 GDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       181 ~D~~~~~~----~~p~~-~l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +|+|....    ..|.. ..+           ..++++. +.+.|||||+++..+++.
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDS-AFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESCC
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHH-HHHhcCCCCEEEEecccC
Confidence            99874211    01110 111           2467777 689999999999876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.24  E-value=3.1e-11  Score=100.79  Aligned_cols=98  Identities=21%  Similarity=0.347  Sum_probs=77.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|+++|+++.+++.+++++...      .+++++.+|+.+.+. ..++||+|+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~-~~~~fD~v~  139 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLGYE-EEKPYDRVV  139 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc------CCeEEEECCcccccc-cCCCccEEE
Confidence            456799999999999999998874  69999999999999999987643      279999999877332 246899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++...+.       +.     .. +.+.|+|||++++...
T Consensus       140 ~~~~~~~-------~~-----~~-~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          140 VWATAPT-------LL-----CK-PYEQLKEGGIMILPIG  166 (231)
T ss_dssp             ESSBBSS-------CC-----HH-HHHTEEEEEEEEEEEC
T ss_pred             ECCcHHH-------HH-----HH-HHHHcCCCcEEEEEEc
Confidence            9864322       11     24 5789999999988764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=1.8e-11  Score=100.48  Aligned_cols=124  Identities=14%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-----hc-C--
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----ES-R--  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-----~~-~--  172 (251)
                      .++.+|||||||+|..+..+++.  ..+|++||+++..               ..++++++.+|+.+.-     .. .  
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            45689999999999999999887  3699999999741               1357999999976421     10 0  


Q ss_pred             --CCceeEEEEcCCCCCCCCcc-cCC----ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          173 --KESYDVIIGDLADPIEGGPC-YKL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       173 --~~~fD~Ii~D~~~~~~~~p~-~~l----~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                        .++||+|++|.+........ ...    .....++. +.++|+|||.|++...     . .+....+...|+..|..|
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~-a~~~LkpGG~lv~k~~-----~-~~~~~~~~~~l~~~F~~v  159 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEI-AVRYLRNGGNVLLKQF-----Q-GDMTNDFIAIWRKNFSSY  159 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEE-----C-STHHHHHHHHHGGGEEEE
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc-----C-CCCHHHHHHHHHHhcCEE
Confidence              14899999997532211100 000    01345666 5899999999998652     1 223567788888889887


Q ss_pred             eee
Q 025534          246 YNL  248 (251)
Q Consensus       246 ~~~  248 (251)
                      ..+
T Consensus       160 ~~~  162 (191)
T 3dou_A          160 KIS  162 (191)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.23  E-value=2.9e-11  Score=99.55  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|..+..+    +..+++++|+++.+++.+++++         ++++++.+|+.+. ...+++||+|+
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  100 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL-PFPGESFDVVL  100 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC-CCCCCcEEEEE
Confidence            36789999999999998876    3248999999999999999874         4688999998663 22356899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+..  +    ...++++. ++++|+|||.+++..
T Consensus       101 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          101 LFTTLEFV--E----DVERVLLE-ARRVLRPGGALVVGV  132 (211)
T ss_dssp             EESCTTTC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChhhhc--C----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            97543221  1    12578888 799999999998865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.23  E-value=5.9e-11  Score=97.14  Aligned_cols=96  Identities=19%  Similarity=0.161  Sum_probs=72.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++. +..+|++||+|+.+++.|++++.         +++++.+|+.++    +++||+|+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~----~~~~D~v~  115 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI----SGKYDTWI  115 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC----CCCEEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC----CCCeeEEE
Confidence            45689999999999999999886 45689999999999999998753         689999998873    36899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +|++.+..  +  .-...++++. +.+.|  |+++++
T Consensus       116 ~~~p~~~~--~--~~~~~~~l~~-~~~~~--g~~~~~  145 (200)
T 1ne2_A          116 MNPPFGSV--V--KHSDRAFIDK-AFETS--MWIYSI  145 (200)
T ss_dssp             ECCCC-----------CHHHHHH-HHHHE--EEEEEE
T ss_pred             ECCCchhc--c--CchhHHHHHH-HHHhc--CcEEEE
Confidence            99874431  1  1123578888 67777  454443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.23  E-value=1.6e-11  Score=102.41  Aligned_cols=107  Identities=13%  Similarity=0.115  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-----CCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHh---c
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELE---S  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~---~  171 (251)
                      .++.+|||||||+|.++..+++..     +..+|+++|+++.+++.|++++...+. ....++++++.+|+.+...   .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            356899999999999999988863     235999999999999999998764310 0013689999999987430   1


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ..++||+|+++...+.       +     ++. +.+.|+|||++++...
T Consensus       159 ~~~~fD~I~~~~~~~~-------~-----~~~-~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASASE-------L-----PEI-LVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBSS-------C-----CHH-HHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchHH-------H-----HHH-HHHhcCCCcEEEEEEc
Confidence            2368999999865322       1     255 6788999999988753

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=4.7e-11  Score=96.18  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|..+..+++. + .+++++|+++.+++.+++++         ++++++.+|+.+. ....++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~~D~i~  112 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ-G-HDVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVD-QISETDFDLIV  112 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTS-CCCCCCEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC-C-CcEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccC-CCCCCceeEEE
Confidence            56789999999999999999886 3 59999999999999999864         3589999998764 22347899999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++.. .+.. .+   -....+++. +.+.|+|||.+++...
T Consensus       113 ~~~~~~~~~-~~---~~~~~~l~~-~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A          113 SAGNVMGFL-AE---DGREPALAN-IHRALGADGRAVIGFG  148 (195)
T ss_dssp             ECCCCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred             ECCcHHhhc-Ch---HHHHHHHHH-HHHHhCCCCEEEEEeC
Confidence            9732 1110 10   012578888 7999999999988654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.22  E-value=1e-11  Score=108.88  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC---CCCCCCeEEEEcchHHHH-----hcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE---AFSDPRLELVINDARAEL-----ESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~---~~~~~rv~~~~~D~~~~l-----~~~  172 (251)
                      +++.+|||||||+|..+..+++.+ ..+++++|+++.+++.|++++.....   .....+++++++|+.+..     ...
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            356899999999999999988753 57999999999999999988753210   001247999999988752     112


Q ss_pred             CCceeEEEEcCCCCCCCCcccCC-ccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l-~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .++||+|++...-++.  . ... ....+++. ++++|+|||.+++..
T Consensus       112 ~~~fD~V~~~~~l~~~--~-~~~~~~~~~l~~-~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYS--F-ESYEQADMMLRN-ACERLSPGGYFIGTT  155 (313)
T ss_dssp             TCCEEEEEEETCGGGG--G-GSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhc--c-CCHHHHHHHHHH-HHHHhCCCcEEEEec
Confidence            3589999997643331  0 011 12478898 799999999999865

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.22  E-value=2.5e-11  Score=102.09  Aligned_cols=103  Identities=24%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+    .++++++.+|+..-+. ...+||+|+
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~Ii  163 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFP-PKAPYDVII  163 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEECCcccCCC-CCCCccEEE
Confidence            4567999999999999999988754 689999999999999999876442    2469999999833222 124699999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      ++...+.       +.     +. +.+.|+|||++++....+
T Consensus       164 ~~~~~~~-------~~-----~~-~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          164 VTAGAPK-------IP-----EP-LIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ECSBBSS-------CC-----HH-HHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHH-------HH-----HH-HHHhcCCCcEEEEEEecC
Confidence            9864322       11     24 578999999999877543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.21  E-value=2.1e-11  Score=96.47  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=84.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-----h--cC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----E--SR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-----~--~~  172 (251)
                      .++.+|||+|||+|.++..+++. .+..+++++|+++ +++.              ++++++.+|+.+.-     .  ..
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEcccccchhhhhhhccCC
Confidence            45679999999999999999886 3336999999999 6421              57899999987652     1  23


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCc-------cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLY-------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~-------~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      +++||+|+++.+.++...+  ...       ...+++. +.++|+|||.+++.....      .....+.+.++..|..+
T Consensus        86 ~~~~D~i~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~~------~~~~~~~~~~~~~~~~~  156 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTP--AVDIPRAMYLVELALEM-CRDVLAPGGSFVVKVFQG------EGFDEYLREIRSLFTKV  156 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCH--HHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEESS------TTHHHHHHHHHHHEEEE
T ss_pred             CCceeEEEECCCccccCCC--ccchHHHHHHHHHHHHH-HHHHcCCCcEEEEEEecC------CcHHHHHHHHHHhhhhE
Confidence            4689999998764431111  000       1478888 799999999998865221      12345556666666554


Q ss_pred             e
Q 025534          246 Y  246 (251)
Q Consensus       246 ~  246 (251)
                      .
T Consensus       157 ~  157 (180)
T 1ej0_A          157 K  157 (180)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.21  E-value=4.6e-11  Score=99.56  Aligned_cols=107  Identities=23%  Similarity=0.323  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+|||||||+|..+..+++.. +..+|+++|+++.+++.+++++...+. .+..++++++.+|+..... ..++||+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  154 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  154 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence            456899999999999999988762 335999999999999999988764210 0013579999999875422 2468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |+++.+.+       .+     ++. +.+.|+|||++++...+
T Consensus       155 i~~~~~~~-------~~-----~~~-~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAP-------VV-----PQA-LIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBS-------SC-----CHH-HHHTEEEEEEEEEEESC
T ss_pred             EEECCchH-------HH-----HHH-HHHhcCCCcEEEEEEec
Confidence            99986532       12     245 68899999999987654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.20  E-value=6.1e-11  Score=107.87  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh-------cccCCCCCCCeEEEEcchHHHHhcC-
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-------VNKEAFSDPRLELVINDARAELESR-  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-------~~~~~~~~~rv~~~~~D~~~~l~~~-  172 (251)
                      .+..+|||||||+|.++..+++..+..+|++||+++.++++|+++..       ..+  ...++++++++|+.+.--.. 
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G--l~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG--KKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT--BCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC--CCCCCeEEEECcccCCccccc
Confidence            45689999999999999998876565679999999999999987532       111  12368999999987643211 


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      -..||+|+++.+..   .+    ...+.+++ +.+.|||||+|++.
T Consensus       250 ~~~aDVVf~Nn~~F---~p----dl~~aL~E-i~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 IANTSVIFVNNFAF---GP----EVDHQLKE-RFANMKEGGRIVSS  287 (438)
T ss_dssp             HHTCSEEEECCTTC---CH----HHHHHHHH-HHTTSCTTCEEEES
T ss_pred             cCCccEEEEccccc---Cc----hHHHHHHH-HHHcCCCCcEEEEe
Confidence            14699999986532   11    12355667 68999999999875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.20  E-value=5.8e-11  Score=99.24  Aligned_cols=101  Identities=13%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|..+..+++..  .+++++|+++.+++.|++.+         ++++++.+|+.+..  .+++||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDFR--LGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHcc--cCCCCcEEE
Confidence            567899999999999999998864  38999999999999999863         46899999987642  257899999


Q ss_pred             EcC--CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDL--ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~--~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..  ..+.. .+   -....+++. ++++|+|||.+++..
T Consensus       106 ~~~~~~~~~~-~~---~~~~~~l~~-~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          106 SMFSSVGYLK-TT---EELGAAVAS-FAEHLEPGGVVVVEP  141 (239)
T ss_dssp             ECTTGGGGCC-SH---HHHHHHHHH-HHHTEEEEEEEEECC
T ss_pred             EcCchHhhcC-CH---HHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            632  11110 11   112478888 799999999999864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.20  E-value=6.8e-11  Score=102.73  Aligned_cols=110  Identities=11%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCchHHHHHH----HhcCCCcEE--EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----
Q 025534          102 NPKTIFIMGGGEGSTAREI----LRHKTVEKV--VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l----~~~~~~~~v--~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-----  170 (251)
                      ++.+|||||||+|.++..+    +...+...|  ++||++++|++.|++.+.... ....-++++..+|+.++..     
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-NLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-SCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-CCCcceEEEEecchhhhhhhhccc
Confidence            3568999999999765433    322222444  999999999999998864221 0111234556777766542     


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..+++||+|++...-++...+      ..++++ ++++|||||.+++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~------~~~l~~-~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI------PATLKF-FHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCCH------HHHHHH-HHHHcCCCcEEEEEE
Confidence            135789999987653331122      468898 799999999998754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.20  E-value=3.9e-11  Score=99.42  Aligned_cols=110  Identities=13%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHH----HhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC----KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a----~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.+    ++.....    ..++++++++|+.+. ....+. 
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~----~~~~v~~~~~d~~~l-~~~~~~-   99 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG----GLPNLLYLWATAERL-PPLSGV-   99 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT----CCTTEEEEECCSTTC-CSCCCE-
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc----CCCceEEEecchhhC-CCCCCC-
Confidence            456899999999999999999875557999999999988853    3332222    235899999998873 333344 


Q ss_pred             eEEEEcCCCCCCCCc-ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p-~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |.|++..+...  .. .......++++. ++++|||||++++..
T Consensus       100 d~v~~~~~~~~--~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 GELHVLMPWGS--LLRGVLGSSPEMLRG-MAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEEESCCHH--HHHHHHTSSSHHHHH-HHHTEEEEEEEEEEE
T ss_pred             CEEEEEccchh--hhhhhhccHHHHHHH-HHHHcCCCcEEEEEe
Confidence            87775543100  00 000001478888 799999999998854

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.19  E-value=1.8e-11  Score=100.37  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|||||||+|.++..++...+..+|+++|+|+.+++.+++++..++   ...++++  .|.....  .+++||+|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g---~~~~v~~--~d~~~~~--~~~~~DvVL  120 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK---TTIKYRF--LNKESDV--YKGTYDVVF  120 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC---CSSEEEE--ECCHHHH--TTSEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCccEEE--ecccccC--CCCCcChhh
Confidence            56889999999999999998876555699999999999999999987653   1124555  6665542  457899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ....-|......     ...+ . +.+.|+|||+++-.
T Consensus       121 a~k~LHlL~~~~-----~al~-~-v~~~L~pggvfISf  151 (200)
T 3fzg_A          121 LLKMLPVLKQQD-----VNIL-D-FLQLFHTQNFVISF  151 (200)
T ss_dssp             EETCHHHHHHTT-----CCHH-H-HHHTCEEEEEEEEE
T ss_pred             HhhHHHhhhhhH-----HHHH-H-HHHHhCCCCEEEEe
Confidence            875422100000     0123 5 58899999998853

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.19  E-value=1.3e-10  Score=107.47  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-CceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~~fD~  178 (251)
                      .++.+|||+|||+|+.+..+++..+. .+|+++|+++..++.+++++...+    -++++++.+|+.++..... ++||+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~fD~  333 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG----IKIVKPLVKDARKAPEIIGEEVADK  333 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEEEcChhhcchhhccCCCCE
Confidence            45679999999999999999886433 699999999999999999876542    2579999999877532222 67999


Q ss_pred             EEEcCCCCCCC----Ccc-------cCC-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEG----GPC-------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~----~p~-------~~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |++|+|.....    .|.       ..+     ...++++. +.+.|||||+++..+.+
T Consensus       334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES-AARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESC
T ss_pred             EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCC
Confidence            99998742210    110       000     01567888 79999999999976654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.19  E-value=6.3e-11  Score=108.86  Aligned_cols=108  Identities=11%  Similarity=0.085  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHH-------HhchhcccCCCCCCCeEEEEcchHH---HHh
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARA---ELE  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------~~~~~~~~~~~~~~rv~~~~~D~~~---~l~  170 (251)
                      .++.+|||||||+|.++..+++..+..+|++||+++.+++.|       ++++...+  +...+++++.+|...   .+.
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~gD~~~~~~~~~  318 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLKKSFVDNNRVA  318 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEcCccccccccc
Confidence            456899999999999999999864456899999999999999       77665332  112589999986542   121


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ...++||+|+++.+. .  .+    .-.+.++. +.+.|+|||++++.
T Consensus       319 ~~~~~FDvIvvn~~l-~--~~----d~~~~L~e-l~r~LKpGG~lVi~  358 (433)
T 1u2z_A          319 ELIPQCDVILVNNFL-F--DE----DLNKKVEK-ILQTAKVGCKIISL  358 (433)
T ss_dssp             HHGGGCSEEEECCTT-C--CH----HHHHHHHH-HHTTCCTTCEEEES
T ss_pred             cccCCCCEEEEeCcc-c--cc----cHHHHHHH-HHHhCCCCeEEEEe
Confidence            123689999987432 1  11    12356777 78999999999875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.18  E-value=1.7e-10  Score=105.98  Aligned_cols=115  Identities=19%  Similarity=0.219  Sum_probs=85.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      .++.+|||+|||+|+.+..+++..+..+|+++|+++..++.+++++...+     -+++++.+|+.++... .+++||+|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCGEQQFDRI  319 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-----CCeEEEeCchhhchhhcccCCCCEE
Confidence            45679999999999999999886544799999999999999999887543     2478999998775421 24689999


Q ss_pred             EEcCCCCCC----CCccc-------CC-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~~-------~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|+|....    ..|..       .+     ...++++. +.+.|||||+++..+++
T Consensus       320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~-a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESC
T ss_pred             EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECC
Confidence            999874321    01100       00     11477888 79999999999987654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.17  E-value=1.3e-10  Score=100.59  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCc---hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--H-------
Q 025534          102 NPKTIFIMGGGE---GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L-------  169 (251)
Q Consensus       102 ~~~~VL~iG~G~---G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l-------  169 (251)
                      ...+|||||||+   |.++..+.+..+..+|++||+||.|++.|++.+..      .++++++.+|+++.  +       
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence            347999999999   98877666654447999999999999999998742      36899999998753  1       


Q ss_pred             hcCC-CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          170 ESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       170 ~~~~-~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ...+ ++||+|++...-++.  + .. ....+++. ++++|+|||.|++....
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~--~-d~-~~~~~l~~-~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYL--S-PD-VVDRVVGA-YRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGS--C-TT-THHHHHHH-HHHHSCTTCEEEEEEEB
T ss_pred             ccCCCCCCEEEEEechhhhC--C-cH-HHHHHHHH-HHHhCCCCcEEEEEEec
Confidence            1111 479999987653321  1 01 23578898 79999999999887643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=2.7e-11  Score=103.56  Aligned_cols=98  Identities=16%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|..+..+++ ++ .+|+++|+++.+++.+++.          ++++++.+|+.++ ...+++||+|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~----------~~~~~~~~d~~~~-~~~~~~fD~v~   99 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-QG-LFVYAVEPSIVMRQQAVVH----------PQVEWFTGYAENL-ALPDKSVDGVI   99 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-TT-CEEEEECSCHHHHHSSCCC----------TTEEEECCCTTSC-CSCTTCBSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-CC-CEEEEEeCCHHHHHHHHhc----------cCCEEEECchhhC-CCCCCCEeEEE
Confidence            4678999999999999999988 33 6999999999999987764          3799999998763 33357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+....      -..+++. ++++|| ||.+++..
T Consensus       100 ~~~~l~~~~~------~~~~l~~-~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          100 SILAIHHFSH------LEKSFQE-MQRIIR-DGTIVLLT  130 (261)
T ss_dssp             EESCGGGCSS------HHHHHHH-HHHHBC-SSCEEEEE
T ss_pred             EcchHhhccC------HHHHHHH-HHHHhC-CcEEEEEE
Confidence            9864222111      2578898 799999 99665543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.16  E-value=1.2e-10  Score=105.17  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++.+|||+|||+|.++.++++.....+|+++|+|+.+++.|++++...+   ..++++++++|+.+.. ...++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g---l~~~i~~~~~D~~~~~-~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG---VLDKIKFIQGDATQLS-QYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT---CGGGCEEEECCGGGGG-GTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhhCC-cccCCcCEE
Confidence            356689999999999999999987543489999999999999999987543   2358999999998863 334789999


Q ss_pred             EEcCCCCCCCCcccCC--ccHHHHHHHHcccC
Q 025534          180 IGDLADPIEGGPCYKL--YTKSFYEFVVKPRL  209 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l--~~~ef~~~~~~~~L  209 (251)
                      ++|+|.....+....+  .-.++++. ++++|
T Consensus       291 i~npPyg~r~~~~~~~~~ly~~~~~~-l~r~l  321 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLYMKFFNE-LAKVL  321 (373)
T ss_dssp             EEECCCC------CCHHHHHHHHHHH-HHHHE
T ss_pred             EECCCCCcccCcchhHHHHHHHHHHH-HHHHc
Confidence            9998743211110111  12567777 68888

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.16  E-value=6.5e-11  Score=97.99  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++           .+++.+|+.++. ...+++||+|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcCCCCCCCccCEE
Confidence            46789999999999999999987 4 69999999999999999753           267888876542 2234789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-.....      ..++++. +++.|+|||.+++..
T Consensus        98 ~~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           98 IFGDVLEHLFD------PWAVIEK-VKPYIKQNGVILASI  130 (230)
T ss_dssp             EEESCGGGSSC------HHHHHHH-TGGGEEEEEEEEEEE
T ss_pred             EECChhhhcCC------HHHHHHH-HHHHcCCCCEEEEEe
Confidence            98753221111      2478888 799999999998864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.16  E-value=4.7e-11  Score=97.49  Aligned_cols=124  Identities=19%  Similarity=0.220  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---------
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---------  169 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---------  169 (251)
                      .++.+|||||||+|.++..+++..+  ..+|+++|+++..               ..++++++.+|+.+..         
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------------CCCCceEEEccccchhhhhhccccc
Confidence            4567999999999999999988643  4799999999931               1256888888876532         


Q ss_pred             -------------h--cCCCceeEEEEcCCCCCCCCc-ccCCc----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChH
Q 025534          170 -------------E--SRKESYDVIIGDLADPIEGGP-CYKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE  229 (251)
Q Consensus       170 -------------~--~~~~~fD~Ii~D~~~~~~~~p-~~~l~----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~  229 (251)
                                   .  ...++||+|+++...++.... .....    ...+++. +.+.|+|||.+++.....      +
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~------~  158 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHF-MEQYINIGGTYIVKMYLG------S  158 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEECS------T
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEeCC------C
Confidence                         0  124689999999753331000 00000    1236777 689999999999864221      1


Q ss_pred             HHHHHHHHHHhhCCcee
Q 025534          230 VFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       230 ~~~~i~~~l~~~F~~v~  246 (251)
                      ....+...++..|..+.
T Consensus       159 ~~~~l~~~l~~~f~~v~  175 (201)
T 2plw_A          159 QTNNLKTYLKGMFQLVH  175 (201)
T ss_dssp             THHHHHHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHHHheEE
Confidence            24456667777776554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.15  E-value=5.5e-11  Score=106.71  Aligned_cols=110  Identities=12%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+++|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..++++++.+|+++.-...++.||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~p~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS---GSERIHGHGANLLDRDVPFPTGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT---TGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC---cccceEEEEccccccCCCCCCCcCEEE
Confidence            4578999999999999999988655579999999 999999999876432   236899999998653000136899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   -....+++. +++.|+|||.+++..
T Consensus       254 ~~~vlh~~-~~---~~~~~~l~~-~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          254 MSQFLDCF-SE---EEVISILTR-VAQSIGKDSKVYIME  287 (363)
T ss_dssp             EESCSTTS-CH---HHHHHHHHH-HHHHCCTTCEEEEEE
T ss_pred             EechhhhC-CH---HHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            86542210 11   012467888 799999999987743

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.15  E-value=2.4e-10  Score=102.93  Aligned_cols=102  Identities=11%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC--------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--------  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~--------  173 (251)
                      .+.+|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -++++++.+|+.+++....        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCHHHHHHHHhhccccccc
Confidence            3578999999999999988874  3699999999999999999988664    2589999999999875321        


Q ss_pred             -------CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          174 -------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       174 -------~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                             .+||+|++|+|...       + ..+++     +.|+++|.++.-+..|
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g-------~-~~~~~-----~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSG-------L-DSETE-----KMVQAYPRILYISCNP  329 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTC-------C-CHHHH-----HHHTTSSEEEEEESCH
T ss_pred             cccccccCCCCEEEECcCccc-------c-HHHHH-----HHHhCCCEEEEEECCH
Confidence                   27999999987421       1 12333     3455788777665443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.14  E-value=4.7e-12  Score=108.65  Aligned_cols=114  Identities=14%  Similarity=0.106  Sum_probs=75.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC-------------------------CC
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------DP  156 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~-------------------------~~  156 (251)
                      ++.+|||||||+|..+..++.. +..+|+++|+|+.+++.|++++......++                         ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4578999999999877766654 445899999999999999987643211110                         01


Q ss_pred             CeE-EEEcchHHHHh---cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          157 RLE-LVINDARAELE---SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       157 rv~-~~~~D~~~~l~---~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++ ++.+|..+...   ...++||+|++...-+.. .+. .-.-...++. ++++|||||.|++..
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i-~~~-~~~~~~~l~~-i~r~LKPGG~li~~~  197 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA-CCS-LDAYRAALCN-LASLLKPGGHLVTTV  197 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH-CSS-HHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHh-cCC-HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            243 88888776321   124689999998542110 000 0011357777 789999999998764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.14  E-value=3e-10  Score=102.10  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+++++|+ |.+++.|++++...+   ..++++++.+|+++.   .+..||+|+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~~---~p~~~D~v~  273 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG---LADRCEILPGDFFET---IPDGADVYL  273 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTTC---CCSSCSEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC---cCCceEEeccCCCCC---CCCCceEEE
Confidence            4568999999999999999998755579999999 999999999876432   247899999998732   234899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   .....+++. +++.|+|||.+++..
T Consensus       274 ~~~vlh~~-~d---~~~~~~L~~-~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          274 IKHVLHDW-DD---DDVVRILRR-IATAMKPDSRLLVID  307 (369)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHTTCCTTCEEEEEE
T ss_pred             hhhhhccC-CH---HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            87542210 10   011368898 799999999988753

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.14  E-value=1.6e-10  Score=102.23  Aligned_cols=106  Identities=8%  Similarity=0.022  Sum_probs=80.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..+|||||||+|..+..+++..+..+++++|+ |.+++.|++++...+   ..++++++.+|+.+   ..+..||+|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~p~~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG---LSGRAQVVVGSFFD---PLPAGAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCCCSCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC---cCcCeEEecCCCCC---CCCCCCcEEEE
Confidence            358999999999999999988655579999999 999999999876432   24789999999863   22348999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-+....+    ....+++. +++.|+|||.+++..
T Consensus       242 ~~vlh~~~~~----~~~~~l~~-~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHDWDDL----SAVAILRR-CAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGGSCHH----HHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred             ehhhccCCHH----HHHHHHHH-HHHhcCCCCEEEEEe
Confidence            7542210010    12578898 799999999988754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.14  E-value=1.3e-10  Score=99.41  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChH------HHHHHHhchhcccCCCCCCCeEEEEcc-hHHH-Hhc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE------VVEFCKSYLVVNKEAFSDPRLELVIND-ARAE-LES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~------vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~-l~~  171 (251)
                      .++.+|||||||+|.++..+++.. +..+|+++|+++.      +++.|++++...+   ..++++++.+| .+.. +..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---LGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST---TGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC---CCCceEEEECChhhhccCCC
Confidence            466899999999999999998863 3369999999997      9999999876432   23689999998 2211 111


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..++||+|++...-.....+      ..+.+. ++++++|||.+++..
T Consensus       119 ~~~~fD~v~~~~~l~~~~~~------~~~~~~-~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          119 ADQHFDRVVLAHSLWYFASA------NALALL-FKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TTCCCSEEEEESCGGGSSCH------HHHHHH-HHHHTTTCSEEEEEE
T ss_pred             CCCCEEEEEEccchhhCCCH------HHHHHH-HHHHhCCCCEEEEEE
Confidence            34789999987543221111      235555 577777799988764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.14  E-value=1.7e-10  Score=105.97  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..+++.  ..+|++||+++.+++.|++++..++    -. ++++.+|+.+++.   ++||+|+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng----l~-v~~~~~d~~~~~~---~~fD~Vv  358 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN----VD-AEFEVASDREVSV---KGFDTVI  358 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CC-EEEEECCTTTCCC---TTCSEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChHHcCc---cCCCEEE
Confidence            45689999999999999999886  3599999999999999999987663    23 9999999988753   2899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|++..   +     ...++.+. ++ .|+|+|++.+.++
T Consensus       359 ~dPPr~---g-----~~~~~~~~-l~-~l~p~givyvsc~  388 (425)
T 2jjq_A          359 VDPPRA---G-----LHPRLVKR-LN-REKPGVIVYVSCN  388 (425)
T ss_dssp             ECCCTT---C-----SCHHHHHH-HH-HHCCSEEEEEESC
T ss_pred             EcCCcc---c-----hHHHHHHH-HH-hcCCCcEEEEECC
Confidence            998732   1     12457776 44 5999999988653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.13  E-value=3.8e-11  Score=111.88  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=79.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++..++   ..++++++.+|++++  ..+++||+|++
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~g---l~~~v~~~~~d~~~~--~~~~~fD~Ivs  230 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIIIS  230 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEEC
T ss_pred             CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcC---CCCcEEEEECchhhC--ccCCCeEEEEE
Confidence            5689999999999999999886 456999999999 8999999876543   246899999998774  22468999999


Q ss_pred             cCCC-CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~-~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++. ... ..    ...+.+.. +++.|+|||++++..
T Consensus       231 ~~~~~~~~-~e----~~~~~l~~-~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          231 EPMGYMLF-NE----RMLESYLH-AKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CCCHHHHT-CH----HHHHHHHH-GGGGEEEEEEEESCE
T ss_pred             eCchHhcC-cH----HHHHHHHH-HHHhcCCCCEEEEEe
Confidence            8651 110 00    12356667 689999999998543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.13  E-value=1.9e-10  Score=98.99  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=72.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++. + .+|++||+|+.|++.|++++...       .++....|... ......++||+|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~-g-~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALER-G-ASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             CCcCEEEEEeCcchHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence            45689999999999999999986 3 59999999999999999986422       23333333211 001124689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +++..-+.. .+   -....+++. +.++| |||++++...
T Consensus       115 v~~~~l~~~-~~---~~~~~~l~~-l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          115 LNDRLINRF-TT---EEARRACLG-MLSLV-GSGTVRASVK  149 (261)
T ss_dssp             EEESCGGGS-CH---HHHHHHHHH-HHHHH-TTSEEEEEEE
T ss_pred             EEhhhhHhC-CH---HHHHHHHHH-HHHhC-cCcEEEEEec
Confidence            998642210 11   012457787 68899 9999998764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.13  E-value=9.3e-11  Score=95.25  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC---------cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHh
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV---------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELE  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~---------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~  170 (251)
                      .++.+|||||||+|.++..+++..+.         .+|+++|+++..               ..++++++ .+|..+...
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------------cCCCCeEEEeccCCCHHH
Confidence            45689999999999999999987433         689999999831               12468888 888654321


Q ss_pred             -------cCCCceeEEEEcCCCCCCCCcccCCcc--------HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534          171 -------SRKESYDVIIGDLADPIEGGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (251)
Q Consensus       171 -------~~~~~fD~Ii~D~~~~~~~~p~~~l~~--------~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~  235 (251)
                             ..+++||+|+++...+.. +.  ....        ..+++. +.+.|+|||.+++.....      .....+.
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~------~~~~~~~  155 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNAT-GF--RDLDHDRLISLCLTLLSV-TPDILQPGGTFLCKTWAG------SQSRRLQ  155 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCC-SC--HHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECCS------GGGHHHH
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCC-CC--cccCHHHHHHHHHHHHHH-HHHHhcCCCEEEEEecCC------ccHHHHH
Confidence                   123589999998642221 10  1111        367888 689999999999875321      1234566


Q ss_pred             HHHHhhCCcee
Q 025534          236 NTLRQVFKCGY  246 (251)
Q Consensus       236 ~~l~~~F~~v~  246 (251)
                      ..++..|..+.
T Consensus       156 ~~l~~~f~~v~  166 (196)
T 2nyu_A          156 RRLTEEFQNVR  166 (196)
T ss_dssp             HHHHHHEEEEE
T ss_pred             HHHHHHhcceE
Confidence            66666776554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.13  E-value=1.6e-10  Score=103.60  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.+   +..||+|+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  253 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKPL---PVTADVVL  253 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCcC---CCCCCEEE
Confidence            3568999999999999999988755569999999 999999999876432   2358999999987532   34599999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   .....+++. +++.|+|||.+++..
T Consensus       254 ~~~vl~~~-~~---~~~~~~l~~-~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          254 LSFVLLNW-SD---EDALTILRG-CVRALEPGGRLLVLD  287 (374)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeccccCC-CH---HHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            87542210 10   011378898 799999999887654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.13  E-value=1.1e-11  Score=105.22  Aligned_cols=114  Identities=12%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC-------------------------CC
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------DP  156 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~-------------------------~~  156 (251)
                      ++.+|||||||+|.++..+++... .+|+++|+++.+++.+++++......++                         ..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            457899999999999988887642 5899999999999999988653210000                         01


Q ss_pred             Ce-EEEEcchHHHHhcCC---CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          157 RL-ELVINDARAELESRK---ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       157 rv-~~~~~D~~~~l~~~~---~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++ +++.+|+.+......   ++||+|++...-+.. .+ ..-....+++. ++++|+|||.+++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~-~~-~~~~~~~~l~~-~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA-CP-DLPAYRTALRN-LGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH-CS-SHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhh-cC-ChHHHHHHHHH-HHhhCCCCcEEEEEe
Confidence            27 899999876532123   789999987542100 00 00012468888 799999999988754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.13  E-value=1.3e-10  Score=99.21  Aligned_cols=99  Identities=17%  Similarity=0.270  Sum_probs=76.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..+++. + .+|+++|+++.+++.|++...        .  .++.+|+.+. ...+++||+|+
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~--------~--~~~~~d~~~~-~~~~~~fD~v~  119 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAEDL-PFPSGAFEAVL  119 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc-C-CeEEEEeCCHHHHHHHHhhcC--------C--CEEECcHHHC-CCCCCCEEEEE
Confidence            46789999999999999999886 3 589999999999999998743        1  2788887653 22357899999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +... .+.  .+  .  ...+++. ++++|+|||.+++..
T Consensus       120 ~~~~~~~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          120 ALGDVLSY--VE--N--KDKAFSE-IRRVLVPDGLLIATV  152 (260)
T ss_dssp             ECSSHHHH--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Ecchhhhc--cc--c--HHHHHHH-HHHHcCCCeEEEEEe
Confidence            8642 211  01  1  3578898 799999999998865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.12  E-value=1.2e-10  Score=103.57  Aligned_cols=108  Identities=12%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+   ..++++++.+|+.+.-...++.||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD---LGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC---CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            78999999999999999998755579999999 899999999876432   23689999999876531134679999996


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..-+.. .+   -....+++. +++.|+|||.+++..
T Consensus       256 ~vlh~~-~~---~~~~~~l~~-~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          256 DCLHYF-DA---REAREVIGH-AAGLVKPGGALLILT  287 (352)
T ss_dssp             SCGGGS-CH---HHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cccccC-CH---HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            542210 10   012578888 799999999988753

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.11  E-value=1.8e-10  Score=98.50  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=75.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++..         ++++++.+|+.+. ...+++||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC-CCCCCceeEEE
Confidence            4568999999999999999988643469999999999999999863         4688999997653 23347899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...      +       .+++. +.++|+|||.+++...
T Consensus       154 ~~~~------~-------~~l~~-~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          154 RIYA------P-------CKAEE-LARVVKPGGWVITATP  179 (269)
T ss_dssp             EESC------C-------CCHHH-HHHHEEEEEEEEEEEE
T ss_pred             EeCC------h-------hhHHH-HHHhcCCCcEEEEEEc
Confidence            7532      1       13577 6899999999988653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.10  E-value=2.3e-10  Score=99.20  Aligned_cols=110  Identities=16%  Similarity=0.161  Sum_probs=75.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEEC-ChHHHHHHHhchhcccC---CCC---CCCeEEEEcc---h-HHHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI-DEEVVEFCKSYLVVNKE---AFS---DPRLELVIND---A-RAEL  169 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi-d~~vi~~a~~~~~~~~~---~~~---~~rv~~~~~D---~-~~~l  169 (251)
                      .++++|||||||+|.++..+++. +..+|+++|+ ++.+++.|+++...|..   .+.   .++++++..|   . ....
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            35679999999999999988886 3459999999 89999999998843210   010   1478888444   2 2222


Q ss_pred             hc-CCCceeEEEE-cCCCCCCCCcccCCccHHHHHHHHcccCC---C--CcEEEEec
Q 025534          170 ES-RKESYDVIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLN---P--EGIFVTQA  219 (251)
Q Consensus       170 ~~-~~~~fD~Ii~-D~~~~~~~~p~~~l~~~ef~~~~~~~~L~---p--gG~l~~~~  219 (251)
                      .. ..++||+|++ |.....   +    ....+++. ++++|+   |  ||++++-.
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~---~----~~~~ll~~-l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFH---Q----AHDALLRS-VKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCG---G----GHHHHHHH-HHHHBCCTTTCTTCEEEEEE
T ss_pred             hhccCCCCCEEEEeCcccCh---H----HHHHHHHH-HHHHhcccCCCCCCEEEEEE
Confidence            11 2478999997 554321   1    13467888 799999   9  99876543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.09  E-value=2.7e-10  Score=101.60  Aligned_cols=107  Identities=21%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.+   +..||+|+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  254 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEPL---PRKADAII  254 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SSCEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCCC---CCCccEEE
Confidence            3568999999999999999988755568999999 999999999876432   2358999999987532   34599999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   ....++++. +++.|+|||.+++..
T Consensus       255 ~~~vl~~~-~~---~~~~~~l~~-~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          255 LSFVLLNW-PD---HDAVRILTR-CAEALEPGGRILIHE  288 (360)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EcccccCC-CH---HHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            87542210 10   011468898 799999999887653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.09  E-value=4.8e-10  Score=100.18  Aligned_cols=106  Identities=11%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.   ....+|+|+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~  261 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVL  261 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CTTTEEEEECCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC---CCCCEEEEeCccccC---CCCCCCEEE
Confidence            4568999999999999999998755569999999 999999999876432   235799999998764   123459999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-+.  -+  .-....+++. +++.|+|||.+++.
T Consensus       262 ~~~vlh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~  294 (359)
T 1x19_A          262 FCRILYS--AN--EQLSTIMCKK-AFDAMRSGGRLLIL  294 (359)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEE
T ss_pred             Eechhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8754221  01  0112578888 79999999998654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.08  E-value=1.8e-10  Score=101.57  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|..+..+++..+..+++++|++ .+++.|++++...+   ..++++++.+|+.+.  ..++.||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG---VASRYHTIAGSAFEV--DYGNDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT---CGGGEEEEESCTTTS--CCCSCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC---CCcceEEEecccccC--CCCCCCcEEE
Confidence            45689999999999999999887545699999999 99999999876432   235799999998763  2234599999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +... ..+  ..   -...++++. +++.|+|||.+++..
T Consensus       238 ~~~~l~~~--~~---~~~~~~l~~-~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          238 LPNFLHHF--DV---ATCEQLLRK-IKTALAVEGKVIVFD  271 (335)
T ss_dssp             EESCGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcchhccC--CH---HHHHHHHHH-HHHhCCCCcEEEEEe
Confidence            9543 222  10   112478888 799999999777643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.07  E-value=8.3e-10  Score=101.49  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      ..+.+|||+|||+|.++..+++.  ..+|+++|+++.+++.|++++..++    -++++++.+|+.+++..   ..++||
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHHHHhhhhhhhcCCCC
Confidence            35679999999999999999986  3699999999999999999987653    24899999999886532   246899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++|++...       +  .++++. +. .++|++++.+.+
T Consensus       359 ~Vv~dPPr~g-------~--~~~~~~-l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          359 KVLLDPARAG-------A--AGVMQQ-II-KLEPIRIVYVSC  389 (433)
T ss_dssp             EEEECCCTTC-------C--HHHHHH-HH-HHCCSEEEEEES
T ss_pred             EEEECCCCcc-------H--HHHHHH-HH-hcCCCeEEEEEC
Confidence            9999987421       1  256666 44 488999887754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.07  E-value=3.6e-10  Score=98.65  Aligned_cols=98  Identities=13%  Similarity=0.055  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHh-cCC-Ccee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELE-SRK-ESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~-~~~-~~fD  177 (251)
                      ..+++|||||||+|.++..++++ +..+|++||+++.|++.+.+.         ++++... ..|++..-. ..+ ..||
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---------~~rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---------DDRVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT---------CTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---------CcccceecccCceecchhhCCCCCCC
Confidence            45679999999999999999887 457999999999999985442         2444333 234332211 112 3499


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|++|.....       +  ..++.. ++++|+|||.+++-
T Consensus       154 ~v~~d~sf~s-------l--~~vL~e-~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          154 FASIDVSFIS-------L--NLILPA-LAKILVDGGQVVAL  184 (291)
T ss_dssp             EEEECCSSSC-------G--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             EEEEEeeHhh-------H--HHHHHH-HHHHcCcCCEEEEE
Confidence            9999975321       1  356777 79999999998774

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.07  E-value=5.3e-10  Score=108.96  Aligned_cols=107  Identities=21%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhc--ccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVV--NKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~--~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ++.+|||||||+|.++..+++.. +..+|++||+++.+++.|++.+..  +......++++++++|+.+. ....++||+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFDl  799 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVDI  799 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCeeE
Confidence            67899999999999999999874 346999999999999999986542  11111236899999998774 234578999


Q ss_pred             EEEcCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |++...-       .++..   ..+++. +.++|+|| .+++.
T Consensus       800 VV~~eVL-------eHL~dp~l~~~L~e-I~RvLKPG-~LIIS  833 (950)
T 3htx_A          800 GTCLEVI-------EHMEEDQACEFGEK-VLSLFHPK-LLIVS  833 (950)
T ss_dssp             EEEESCG-------GGSCHHHHHHHHHH-HHHTTCCS-EEEEE
T ss_pred             EEEeCch-------hhCChHHHHHHHHH-HHHHcCCC-EEEEE
Confidence            9996432       22222   347888 79999999 55553

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.06  E-value=6.1e-11  Score=102.94  Aligned_cols=131  Identities=12%  Similarity=-0.002  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE--EcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~--~~D~~~~l~~~~~~fD~  178 (251)
                      .+..+|||||||+|.++..+++.   .+|++||+++ ++..+++. +..... ...+++++  .+|+.++   .+++||+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~  151 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-PRLVET-FGWNLITFKSKVDVTKM---EPFQADT  151 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-CCCCCC-TTGGGEEEECSCCGGGC---CCCCCSE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-hhhhhh-cCCCeEEEeccCcHhhC---CCCCcCE
Confidence            35679999999999999999886   4899999999 43333322 111000 11278999  9998773   2578999


Q ss_pred             EEEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCCc--EEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG--~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      |++|.. .....+. ....+..+++. +.+.|+|||  .+++....|  . .. ....+++.++..|..+.
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~~v~~~~~~--~-~~-~~~~~l~~l~~~f~~v~  216 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNV-ISRWLEYNQGCGFCVKVLNP--Y-SC-DVLEALMKMQARFGGGL  216 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHSTTCEEEEEESCC--C-SH-HHHHHHHHHHHHHCCEE
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHH-HHHHhccCCCcEEEEEeCCC--C-ch-hHHHHHHHHHHHcCCEE
Confidence            999976 2211110 00001136777 689999999  998865444  1 22 23355566666666554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.06  E-value=1.6e-10  Score=102.04  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=79.7

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~  183 (251)
                      .+|||+|||+|..+..+++..+..+++++|+ +.+++.|++++...+   ..++++++.+|+.+.   .++.||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---AGERVSLVGGDMLQE---VPSNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH---HTTSEEEEESCTTTC---CCSSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC---CCCcEEEecCCCCCC---CCCCCCEEEEch
Confidence            8999999999999999988655569999999 999999999875332   236899999998762   246799999875


Q ss_pred             CCC-CCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          184 ADP-IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       184 ~~~-~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .-+ +  .+   -....+++. +++.|+|||.+++..
T Consensus       242 vl~~~--~~---~~~~~~l~~-~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          242 IIGDL--DE---AASLRLLGN-CREAMAGDGRVVVIE  272 (334)
T ss_dssp             CGGGC--CH---HHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             hccCC--CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            422 2  11   012478888 799999999988764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.06  E-value=1.9e-10  Score=104.33  Aligned_cols=97  Identities=16%  Similarity=0.312  Sum_probs=70.1

Q ss_pred             CCCCeEEEEecC------chHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHh-
Q 025534          101 PNPKTIFIMGGG------EGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELE-  170 (251)
Q Consensus       101 ~~~~~VL~iG~G------~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~-  170 (251)
                      .++.+|||||||      +|+.+..+++ +.+..+|++||+++.+.      .       ..++++++++|+.+  +.. 
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-------~~~rI~fv~GDa~dlpf~~~  281 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-------DELRIRTIQGDQNDAEFLDR  281 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-------CBTTEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-------cCCCcEEEEecccccchhhh
Confidence            467899999999      5555555554 43457999999999972      1       23689999999876  331 


Q ss_pred             --cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          171 --SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                        ...++||+|++|....+   +    ....+|+. ++++|||||++++.
T Consensus       282 l~~~d~sFDlVisdgsH~~---~----d~~~aL~e-l~rvLKPGGvlVi~  323 (419)
T 3sso_A          282 IARRYGPFDIVIDDGSHIN---A----HVRTSFAA-LFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHCCEEEEEECSCCCH---H----HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             hhcccCCccEEEECCcccc---h----hHHHHHHH-HHHhcCCCeEEEEE
Confidence              11478999999864211   1    12468888 79999999999985

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.05  E-value=3.4e-10  Score=93.95  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=72.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +.+|||||||+|.++..+++.      +++|+++.+++.+++.           +++++.+|+.+. ....++||+|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccC-CCCCCCeeEEEEc
Confidence            789999999999999887653      9999999999999975           578889997653 2234689999987


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..-...  +    ...++++. +.+.|+|||.+++..
T Consensus       110 ~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          110 TTICFV--D----DPERALKE-AYRILKKGGYLIVGI  139 (219)
T ss_dssp             SCGGGS--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             chHhhc--c----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            542211  1    12578888 799999999998864

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.04  E-value=5.4e-11  Score=103.06  Aligned_cols=113  Identities=14%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC--------------C------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------------D------------  155 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--------------~------------  155 (251)
                      ++.+|||||||+|..+..+.+.. ..+|+++|+++.+++.|++++......+.              .            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            56899999999999554444433 35999999999999999986542100000              0            


Q ss_pred             CCeEEEEcchHHHHh-----cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          156 PRLELVINDARAELE-----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       156 ~rv~~~~~D~~~~l~-----~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ..++++..|+.+.+.     ..+++||+|++...-++. .+ ..-.-..+++. ++++|||||.|++.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~-~~~~~~~~l~~-~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV-SP-DLASFQRALDH-ITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH-CS-SHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhh-cC-CHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            025677778876332     123569999998542110 00 00012468888 79999999998874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.04  E-value=2.8e-10  Score=101.34  Aligned_cols=110  Identities=15%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC-----CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      .+.+|||+|||+|.++..++++.+     ..+++++|+|+.+++.|+.++...+     .+++++++|+....  ..++|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~~~~i~~~D~l~~~--~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLANL--LVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSCC--CCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----CCceEEECCCCCcc--ccCCc
Confidence            457999999999999988877522     1589999999999999999877553     26899999976532  34789


Q ss_pred             eEEEEcCCCCCCC--------Cc--ccCC--ccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEG--------GP--CYKL--YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~--------~p--~~~l--~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|++|+|.....        .+  ....  ....|++. +.+.|+|||++++-.
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~-~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLV  256 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHH-HHHHhCCCCEEEEEE
Confidence            9999998732100        00  0001  12368888 689999999888765

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.03  E-value=5.3e-10  Score=92.58  Aligned_cols=99  Identities=13%  Similarity=0.068  Sum_probs=74.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCC-CCCCeEEEEcchHH-------------
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELVINDARA-------------  167 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~-~~~rv~~~~~D~~~-------------  167 (251)
                      ++++||++|+|  ..+..+++.. ..+|+.||.|++..+.|++++...+  + ...+++++.+|+.+             
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g--~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANP--PAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSC--CCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCCceEEEEeCchhhhcccccccchhh
Confidence            57899999984  6777777754 4799999999999999999997543  1 04589999999643             


Q ss_pred             -----HHh---cC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          168 -----ELE---SR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       168 -----~l~---~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                           +..   ..  .++||+|++|...           ..+++.. +.++|+|||++++
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----------~~~~~~~-~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-----------RVGCALA-TAFSITRPVTLLF  152 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSS-----------HHHHHHH-HHHHCSSCEEEEE
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCC-----------chhHHHH-HHHhcCCCeEEEE
Confidence                 321   12  3689999999631           1255666 4689999999987

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.03  E-value=1.2e-10  Score=105.90  Aligned_cols=103  Identities=21%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+.+|||+|||+|.++..++++. +..+++++|+|+.+++.|             ++++++++|..++.  ..++||+|
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~~--~~~~fD~I  102 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLWE--PGEAFDLI  102 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGCC--CSSCEEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhcC--ccCCCCEE
Confidence            346799999999999999998752 346999999999998765             36899999988753  24689999


Q ss_pred             EEcCCCCCCCC---------ccc--------C------CccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGG---------PCY--------K------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~---------p~~--------~------l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++|||......         ...        .      -....|++. +.++|+|||.+++-.
T Consensus       103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A          103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVV  164 (421)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHH-HHHHhCCCCEEEEEE
Confidence            99987422101         000        0      011267888 689999999988765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.03  E-value=7.9e-11  Score=101.64  Aligned_cols=131  Identities=12%  Similarity=-0.007  Sum_probs=83.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE--EcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~--~~D~~~~l~~~~~~fD~  178 (251)
                      .+..+|||||||+|..+..+++.   .+|++||+++ ++..+++. +..... ...++.++  .+|+.++   .+++||+
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~  143 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRITES-YGWNIVKFKSRVDIHTL---PVERTDV  143 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCCCB-TTGGGEEEECSCCTTTS---CCCCCSE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhhhc-cCCCeEEEecccCHhHC---CCCCCcE
Confidence            45679999999999999998886   5899999999 43322221 110000 11268999  8998763   2578999


Q ss_pred             EEEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCCc--EEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG--~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      |++|.. .....+. .+..+..+++. +.++|+|||  .+++....|  . .. ....++..++..|..+.
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~fv~kv~~~--~-~~-~~~~~l~~l~~~f~~v~  208 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILEL-LEKWKVKNPSADFVVKVLCP--Y-SV-EVMERLSVMQRKWGGGL  208 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHCTTCEEEEEESCT--T-SH-HHHHHHHHHHHHHCCEE
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHH-HHHHhccCCCeEEEEEeCCC--C-Ch-hHHHHHHHHHHHcCCEE
Confidence            999976 2211110 00001136777 689999999  998866434  1 12 23356666777776553

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.02  E-value=1.3e-10  Score=102.29  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEEC----ChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHHhcCCCc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi----d~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l~~~~~~  175 (251)
                      .++.+|||||||+|..+..+++.   .+|++||+    ++..++.+    ....  ...++++++.+ |+..+   ..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~----~~~~--~~~~~v~~~~~~D~~~l---~~~~  148 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI----PMST--YGWNLVRLQSGVDVFFI---PPER  148 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC----CCCS--TTGGGEEEECSCCTTTS---CCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH----Hhhh--cCCCCeEEEeccccccC---CcCC
Confidence            34579999999999999999886   47999999    45333211    1110  11367999999 87654   2468


Q ss_pred             eeEEEEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          176 YDVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      ||+|++|..... .... .+..+...+.. +.+.|+|||.|++....+  .  ......++..++..|..+.
T Consensus       149 fD~V~sd~~~~~-g~~~~d~~~~l~~L~~-~~~~LkpGG~~v~kv~~~--~--~~~~~~~l~~l~~~f~~v~  214 (305)
T 2p41_A          149 CDTLLCDIGESS-PNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP--Y--MSSVIEKMEALQRKHGGAL  214 (305)
T ss_dssp             CSEEEECCCCCC-SSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC--C--SHHHHHHHHHHHHHHCCEE
T ss_pred             CCEEEECCcccc-CcchhhHHHHHHHHHH-HHHHhCCCCEEEEEeCCC--C--CchHHHHHHHHHHHcCCEE
Confidence            999999975321 0100 00001146676 689999999999876433  1  2334566677777777654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.02  E-value=7e-09  Score=91.34  Aligned_cols=115  Identities=15%  Similarity=0.052  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD  177 (251)
                      .++.+|||+|||+|+.+..+++. .+..+|+++|+++..++.+++++...+    -.+++++.+|+.++....  .++||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCChHhcCccccccCCCC
Confidence            35679999999999999998875 334699999999999999999987543    257999999998764321  15799


Q ss_pred             EEEEcCCCCCCC----Ccc--c-------CC-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          178 VIIGDLADPIEG----GPC--Y-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       178 ~Ii~D~~~~~~~----~p~--~-------~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      .|++|+|.....    .|.  .       .+     ...++++. +.+.|+ ||+++..+++
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-ALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHH-HTTCTT-CCEEEEEESC
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHH-HHhccC-CCEEEEECCC
Confidence            999999842210    110  0       00     01345666 567776 8988876654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.99  E-value=2.6e-09  Score=92.37  Aligned_cols=128  Identities=13%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCc--hHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hcC--C
Q 025534          102 NPKTIFIMGGGE--GSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESR--K  173 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~--~  173 (251)
                      ..++|||||||.  +....++++ ..+..+|++||.||.|++.||+.+...    ...+++++++|+++.-   ...  .
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~----~~~~~~~v~aD~~~~~~~l~~~~~~  153 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST----PEGRTAYVEADMLDPASILDAPELR  153 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC----SSSEEEEEECCTTCHHHHHTCHHHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC----CCCcEEEEEecccChhhhhcccccc
Confidence            457999999997  334454443 334579999999999999999887532    1247999999998752   111  2


Q ss_pred             Ccee-----EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          174 ESYD-----VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       174 ~~fD-----~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      +.||     .|+++..-++.  +. .-.-...++. +.+.|+|||.|++....+.  ..++....+.+.++
T Consensus       154 ~~~D~~~p~av~~~avLH~l--~d-~~~p~~~l~~-l~~~L~PGG~Lvls~~~~d--~~p~~~~~~~~~~~  218 (277)
T 3giw_A          154 DTLDLTRPVALTVIAIVHFV--LD-EDDAVGIVRR-LLEPLPSGSYLAMSIGTAE--FAPQEVGRVAREYA  218 (277)
T ss_dssp             TTCCTTSCCEEEEESCGGGS--CG-GGCHHHHHHH-HHTTSCTTCEEEEEEECCT--TSHHHHHHHHHHHH
T ss_pred             cccCcCCcchHHhhhhHhcC--Cc-hhhHHHHHHH-HHHhCCCCcEEEEEeccCC--CCHHHHHHHHHHHH
Confidence            4455     46666654441  10 0001468888 7999999999998764331  22333444444444

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.97  E-value=3.2e-10  Score=103.21  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=73.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++. + .+|+++|+++.+++.|++. ...      ....++..+..+.+...+++||+|+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~-g-~~v~gvD~s~~~~~~a~~~-~~~------~~~~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA-G-VRHLGFEPSSGVAAKAREK-GIR------VRTDFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT-T-CEEEEECCCHHHHHHHHTT-TCC------EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-C-CcEEEECCCHHHHHHHHHc-CCC------cceeeechhhHhhcccCCCCEEEEE
Confidence            35679999999999999999886 3 4999999999999999986 111      1112222232333333357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-.+.  +    .-.++++. ++++|+|||++++..
T Consensus       177 ~~~vl~h~--~----d~~~~l~~-~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          177 AANTLCHI--P----YVQSVLEG-VDALLAPDGVFVFED  208 (416)
T ss_dssp             EESCGGGC--T----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECChHHhc--C----CHHHHHHH-HHHHcCCCeEEEEEe
Confidence            97542221  1    13578999 799999999999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.97  E-value=1.7e-09  Score=96.38  Aligned_cols=104  Identities=20%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++..+|||||||+|..+..+++..+..+++++|+ +.++.  ++.....+   ..++++++.+|+++   ..+ .||+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~---~~~~v~~~~~d~~~---~~p-~~D~v~  252 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD---VAGRWKVVEGDFLR---EVP-HADVHV  252 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG---GTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC---CCCCeEEEecCCCC---CCC-CCcEEE
Confidence            4568999999999999999988655568999999 55555  44433221   24689999999863   223 899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   .....+++. +++.|||||.+++..
T Consensus       253 ~~~vlh~~-~d---~~~~~~L~~-~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          253 LKRILHNW-GD---EDSVRILTN-CRRVMPAHGRVLVID  286 (348)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHTCCTTCEEEEEE
T ss_pred             EehhccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            87542210 11   011478898 799999999998753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.96  E-value=5.8e-10  Score=95.84  Aligned_cols=80  Identities=13%  Similarity=0.107  Sum_probs=65.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECCh-------HHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE-------EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~-------~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-  173 (251)
                      .+.+|||+|||+|..+..+++. + .+|+++|+++       .+++.|+++...++   ...+++++++|+.+++.... 
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~-g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~---~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL-G-LTVTAFEQHPAVACLLSDGIRRALLNPETQD---TAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT-T-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHH---HHTTEEEEESCHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHh-C-CEEEEEECChhhhHHHHHHHHHHHhHHHhhC---CccCeEEEECCHHHHHHhhhc
Confidence            4578999999999999999986 3 5899999999       99999998876543   12469999999999875322 


Q ss_pred             --CceeEEEEcCCCC
Q 025534          174 --ESYDVIIGDLADP  186 (251)
Q Consensus       174 --~~fD~Ii~D~~~~  186 (251)
                        ++||+|++|++.+
T Consensus       158 ~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHCCCSEEEECCCC-
T ss_pred             cCCCccEEEECCCCC
Confidence              6899999998644

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.96  E-value=2.2e-09  Score=97.30  Aligned_cols=112  Identities=12%  Similarity=-0.026  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC--------------------------------------cEEEEEECChHHHHHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV--------------------------------------EKVVMCDIDEEVVEFC  142 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~--------------------------------------~~v~~VEid~~vi~~a  142 (251)
                      .....+||.+||+|+++.+++.....                                      .+|+++|+|+.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            34578999999999999888764211                                      3599999999999999


Q ss_pred             HhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCC--CcEEEEecC
Q 025534          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQAG  220 (251)
Q Consensus       143 ~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p--gG~l~~~~~  220 (251)
                      +++....+   ...+++++++|+.++..  .++||+|++|||.....+.  .-...++|+. +.+.|++  ||.+.+-+.
T Consensus       273 r~Na~~~g---l~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          273 RKNAREVG---LEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLD--DKAVDILYNE-MGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHTT---CTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSC--HHHHHHHHHH-HHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHcC---CCCceEEEECChHHCCc--cCCcCEEEECCchhhccCC--HHHHHHHHHH-HHHHHhhCCCcEEEEEEC
Confidence            99987553   23579999999988632  3589999999985432111  1112456666 4555554  888777654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.95  E-value=5.4e-09  Score=95.00  Aligned_cols=112  Identities=11%  Similarity=0.047  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC--------------------------------------cEEEEEECChHHHHHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV--------------------------------------EKVVMCDIDEEVVEFC  142 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~--------------------------------------~~v~~VEid~~vi~~a  142 (251)
                      .....|||++||+|.++.+++.....                                      .+|+++|+|+.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            34578999999999999888764211                                      3699999999999999


Q ss_pred             HhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCC--CcEEEEecC
Q 025534          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQAG  220 (251)
Q Consensus       143 ~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p--gG~l~~~~~  220 (251)
                      +++....+   ...+++++++|+.++.  ..++||+|++|||.....+.  .-...++|+. +.+.|++  ||.+.+-++
T Consensus       280 r~Na~~~g---l~~~I~~~~~D~~~~~--~~~~fD~Iv~NPPYg~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          280 KQNAVEAG---LGDLITFRQLQVADFQ--TEDEYGVVVANPPYGERLED--EEAVRQLYRE-MGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHTT---CTTCSEEEECCGGGCC--CCCCSCEEEECCCCCCSHHH--HHHHHHHHHH-HHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHcC---CCCceEEEECChHhCC--CCCCCCEEEECCCCccccCC--chhHHHHHHH-HHHHHhcCCCCEEEEEEC
Confidence            99987553   2357999999998853  24689999999985321110  0112345665 4444544  887776554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.95  E-value=1e-09  Score=100.10  Aligned_cols=80  Identities=13%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii  180 (251)
                      .+.+|||+|||+|..+..+++. . .+|++||+|+.+++.|++++..+...  -.+++++++|+.+++... .++||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g-~~V~~VD~s~~~l~~Ar~N~~~~~~g--l~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-A-SQGIYIERNDETAVAARHNIPLLLNE--GKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHHSCT--TCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-C-CEEEEEECCHHHHHHHHHhHHHhccC--CCcEEEEECcHHHhhhhccCCCceEEE
Confidence            3689999999999999988875 3 69999999999999999998754101  158999999999887542 35899999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      +||+.
T Consensus       169 lDPPr  173 (410)
T 3ll7_A          169 VDPAR  173 (410)
T ss_dssp             ECCEE
T ss_pred             ECCCC
Confidence            99974

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.95  E-value=2.1e-09  Score=102.12  Aligned_cols=77  Identities=17%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      .++.||||||||+|.++..+++. + ++||+||+++.+|+.|+.+....+    ..++++.++|+.+.... .+++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~-g-a~V~giD~~~~~i~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK-G-ATIVGIDFQQENINVCRALAEENP----DFAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTST----TSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC-C-CEEEEECCCHHHHHHHHHHHHhcC----CCceEEEECCHHHHhhhccCCCccEE
Confidence            46789999999999999999997 4 589999999999999999976442    24699999999988654 35789999


Q ss_pred             EEcC
Q 025534          180 IGDL  183 (251)
Q Consensus       180 i~D~  183 (251)
                      ++--
T Consensus       139 ~~~e  142 (569)
T 4azs_A          139 IGLS  142 (569)
T ss_dssp             EEES
T ss_pred             EECc
Confidence            9864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.93  E-value=1e-09  Score=92.82  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=67.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCC-cee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKE-SYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~-~fD  177 (251)
                      +.+++|||||||+|.++..+++. +..+|++||+++.+++.+++..         +++......-..++.  .... .||
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d  105 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD---------ERVVVMEQFNFRNAVLADFEQGRPS  105 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC---------TTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC---------ccccccccceEEEeCHhHcCcCCCC
Confidence            45679999999999999999987 4469999999999999988753         233222111111211  1122 378


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+.+|..-..       +  ..+++. ++++|||||.+++.
T Consensus       106 ~~~~D~v~~~-------l--~~~l~~-i~rvLkpgG~lv~~  136 (232)
T 3opn_A          106 FTSIDVSFIS-------L--DLILPP-LYEILEKNGEVAAL  136 (232)
T ss_dssp             EEEECCSSSC-------G--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             EEEEEEEhhh-------H--HHHHHH-HHHhccCCCEEEEE
Confidence            7777753211       1  457888 79999999998875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.92  E-value=2.3e-09  Score=93.20  Aligned_cols=77  Identities=18%  Similarity=0.361  Sum_probs=62.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|++||+|+.+++.+++++...+   ..++++++.+|+.++   .-..||+|+
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~---~~~~fD~vv   98 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   98 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceecc---cchhhcEEE
Confidence            356799999999999999999873  589999999999999999875321   125899999998764   124799999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      ++++.
T Consensus        99 ~nlpy  103 (285)
T 1zq9_A           99 ANLPY  103 (285)
T ss_dssp             EECCG
T ss_pred             EecCc
Confidence            99764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.91  E-value=1.4e-09  Score=98.53  Aligned_cols=111  Identities=16%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC--------------------------------------CcEEEEEECChHHHHHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFCK  143 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a~  143 (251)
                      ...+|||++||+|.++.+++....                                      ..+|+++|+|+.+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            457899999999999988876411                                      147999999999999999


Q ss_pred             hchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCC--CcEEEEecC
Q 025534          144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQAG  220 (251)
Q Consensus       144 ~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p--gG~l~~~~~  220 (251)
                      ++...++   ...++++.++|+.++.  .+++||+|++|||.....+.  .-...++|+. +.+.|++  ||.+.+-+.
T Consensus       275 ~Na~~~g---l~~~i~~~~~D~~~l~--~~~~~D~Iv~NPPyg~rl~~--~~~l~~ly~~-lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          275 ENAEIAG---VDEYIEFNVGDATQFK--SEDEFGFIITNPPYGERLED--KDSVKQLYKE-LGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHT---CGGGEEEEECCGGGCC--CSCBSCEEEECCCCCCSHHH--HHHHHHHHHH-HHHHHHTSBSCEEEEEES
T ss_pred             HHHHHcC---CCCceEEEECChhhcC--cCCCCcEEEECCCCcCccCC--HHHHHHHHHH-HHHHHhhCCCCEEEEEEC
Confidence            9987553   2347999999998863  24689999999984321110  0112356665 4555554  777766553

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.90  E-value=2.5e-09  Score=92.71  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCchH----HHHHHHhc-CC---CcEEEEEECChHHHHHHHhchh-c------------------cc--CC
Q 025534          102 NPKTIFIMGGGEGS----TAREILRH-KT---VEKVVMCDIDEEVVEFCKSYLV-V------------------NK--EA  152 (251)
Q Consensus       102 ~~~~VL~iG~G~G~----~~~~l~~~-~~---~~~v~~VEid~~vi~~a~~~~~-~------------------~~--~~  152 (251)
                      ++.+||++|||+|.    ++..+++. +.   ..+|+++|+|+++++.|++..- .                  ..  ..
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55555554 21   2489999999999999998631 0                  00  00


Q ss_pred             -C-----CCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          153 -F-----SDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       153 -~-----~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +     ...++++...|..+. .-. .++||+|+|-..-... .+   -.....++. +.+.|+|||.|++-.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-~~~~~~~fDlI~crnvliyf-~~---~~~~~vl~~-~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYF-DK---TTQEDILRR-FVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGS-CH---HHHHHHHHH-HGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCC-CCCcCCCeeEEEECCchHhC-CH---HHHHHHHHH-HHHHhCCCcEEEEEe
Confidence             0     013789999998762 111 3689999995321100 11   112567888 799999999999854

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.89  E-value=2.2e-09  Score=96.49  Aligned_cols=98  Identities=20%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|||||||+|..+..+++..+..+++++|+ +.+++.++++          ++++++.+|+++.   .+. ||+|+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~v~  272 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS---VPQ-GDAMI  272 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC---CCC-EEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC---CCC-CCEEE
Confidence            3568999999999999999998755568999999 9999877652          5799999998762   223 99999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-+.  -+.  .....+++. +++.|+|||.+++.
T Consensus       273 ~~~~lh~--~~d--~~~~~~l~~-~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          273 LKAVCHN--WSD--EKCIEFLSN-CHKALSPNGKVIIV  305 (372)
T ss_dssp             EESSGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Eeccccc--CCH--HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8754221  110  011378898 79999999988875

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.88  E-value=4.4e-09  Score=94.06  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=78.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ..++|||||||+|.++..+++..+..++++.|+ |.+++.|++++...    ..+|++++.+|+++   .....+|+|++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~----~~~rv~~~~gD~~~---~~~~~~D~~~~  250 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ----EEEQIDFQEGDFFK---DPLPEADLYIL  250 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTT---SCCCCCSEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc----ccCceeeecCcccc---CCCCCceEEEe
Confidence            457999999999999999998766678999998 89999999987643    24799999999754   33456899998


Q ss_pred             cCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -.. +.|. .+    ....+++. +++.|+|||.+++..
T Consensus       251 ~~vlh~~~-d~----~~~~iL~~-~~~al~pgg~lli~e  283 (353)
T 4a6d_A          251 ARVLHDWA-DG----KCSHLLER-IYHTCKPGGGILVIE  283 (353)
T ss_dssp             ESSGGGSC-HH----HHHHHHHH-HHHHCCTTCEEEEEE
T ss_pred             eeecccCC-HH----HHHHHHHH-HHhhCCCCCEEEEEE
Confidence            643 2221 10    12467888 699999999887653

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.87  E-value=4.5e-09  Score=91.72  Aligned_cols=119  Identities=18%  Similarity=0.302  Sum_probs=75.7

Q ss_pred             CCCCeEEEEecCc------hHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE-EEcchHHHHhcC
Q 025534          101 PNPKTIFIMGGGE------GSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~------G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~-~~~D~~~~l~~~  172 (251)
                      .++.+|||||||+      |+  ..+++. +...+|++||+++.        +         +++++ +++|+.+..  .
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---------~~v~~~i~gD~~~~~--~  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---------SDADSTLIGDCATVH--T  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---------CSSSEEEESCGGGCC--C
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---------CCCEEEEECccccCC--c
Confidence            4567999999944      76  333333 32469999999998        1         25788 999987642  2


Q ss_pred             CCceeEEEEcCCCCCC-----CCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCcee
Q 025534          173 KESYDVIIGDLADPIE-----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGY  246 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~-----~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~  246 (251)
                      .++||+|++|...+..     .......+-.+.++. +.+.|||||.|++.....   ..   ...+.+.+++. |..+.
T Consensus       121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~-a~r~LkpGG~~v~~~~~~---~~---~~~l~~~l~~~GF~~v~  193 (290)
T 2xyq_A          121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKITEH---SW---NADLYKLMGHFSWWTAF  193 (290)
T ss_dssp             SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEECSS---SC---CHHHHHHHTTEEEEEEE
T ss_pred             cCcccEEEEcCCccccccccccccchHHHHHHHHHH-HHHhcCCCcEEEEEEecc---CC---HHHHHHHHHHcCCcEEE
Confidence            3689999999753321     000001112467888 799999999999854221   11   23566667766 65554


Q ss_pred             e
Q 025534          247 N  247 (251)
Q Consensus       247 ~  247 (251)
                      .
T Consensus       194 ~  194 (290)
T 2xyq_A          194 V  194 (290)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.87  E-value=3.8e-09  Score=94.16  Aligned_cols=98  Identities=19%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+.+|||||||+|..+..+++..+..+++++|+ +.+++.|+++          ++++++.+|+.+.   .+ .||+|++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~p-~~D~v~~  252 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTS---IP-NADAVLL  252 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTC---CC-CCSEEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCC---CC-CccEEEe
Confidence            468999999999999999998654568999999 9999887752          4599999998652   22 4999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCC---CcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p---gG~l~~~~  219 (251)
                      ...-+.. ..   .....+++. +++.|+|   ||.+++..
T Consensus       253 ~~~lh~~-~d---~~~~~~l~~-~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          253 KYILHNW-TD---KDCLRILKK-CKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             ESCGGGS-CH---HHHHHHHHH-HHHHHSGGGCCCEEEEEE
T ss_pred             ehhhccC-CH---HHHHHHHHH-HHHhCCCCCCCcEEEEEE
Confidence            7542210 11   012378898 7999999   99887653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.87  E-value=9.3e-09  Score=90.23  Aligned_cols=79  Identities=28%  Similarity=0.313  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hcCC-Cce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRK-ESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~~-~~f  176 (251)
                      .++.+|||+|||+|+.+..+++..+..+|+++|+|+.+++.|++++...+     ++++++++|+.++-   ...+ .+|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-----~~v~~v~~d~~~l~~~l~~~g~~~~   99 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKTLGIEKV   99 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHhcCCCCC
Confidence            35679999999999999999987444699999999999999999876542     58999999987652   2212 589


Q ss_pred             eEEEEcCC
Q 025534          177 DVIIGDLA  184 (251)
Q Consensus       177 D~Ii~D~~  184 (251)
                      |.|++|++
T Consensus       100 D~Vl~D~g  107 (301)
T 1m6y_A          100 DGILMDLG  107 (301)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEcCc
Confidence            99999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.86  E-value=2.7e-09  Score=95.93  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=73.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||||||+|..+..+++..+..+++++|+ |.+++.+++          .++++++.+|+++.+   ++. |+|++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~~---p~~-D~v~~  267 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFDGV---PKG-DAIFI  267 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTCC---CCC-SEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCCCC---CCC-CEEEE
Confidence            458999999999999999988655578999999 999887664          268999999987622   233 99998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-+.. ..   -....+++. +++.|+|||.+++..
T Consensus       268 ~~vlh~~-~~---~~~~~~l~~-~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          268 KWICHDW-SD---EHCLKLLKN-CYAALPDHGKVIVAE  300 (368)
T ss_dssp             ESCGGGB-CH---HHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             echhhcC-CH---HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            7542210 11   012367888 799999999887753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.86  E-value=6.1e-09  Score=89.30  Aligned_cols=75  Identities=20%  Similarity=0.388  Sum_probs=61.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcC--CCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR--KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~--~~~fD  177 (251)
                      .++.+|||||||+|.++..+++..  .+|++||+|+.+++.+++++..      .++++++++|+.++ +...  +++||
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~   99 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVKTDKPLR   99 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhccCCCeE
Confidence            356789999999999999999863  6999999999999999998753      36899999999876 2222  35788


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                       |+.|+|
T Consensus       100 -vv~NlP  105 (255)
T 3tqs_A          100 -VVGNLP  105 (255)
T ss_dssp             -EEEECC
T ss_pred             -EEecCC
Confidence             888876

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.86  E-value=4.6e-09  Score=91.89  Aligned_cols=76  Identities=17%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++..      .++++++++|+.++- -....||+|+
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~-~~~~~fD~Iv  119 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVD-LNKLDFNKVV  119 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSC-GGGSCCSEEE
T ss_pred             CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCC-cccCCccEEE
Confidence            35679999999999999999987  36999999999999999998762      368999999988642 1234799999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      .+++.
T Consensus       120 ~NlPy  124 (295)
T 3gru_A          120 ANLPY  124 (295)
T ss_dssp             EECCG
T ss_pred             EeCcc
Confidence            99763

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.85  E-value=7.3e-09  Score=89.58  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=61.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +. +|||||||+|.++..+++..  .+|++||+|+++++.+++++.       ..+++++++|+.++--.....+|.|+.
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~~~~~~~iv~  116 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEEVPQGSLLVA  116 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhhccCccEEEe
Confidence            45 99999999999999999863  689999999999999998864       258999999998762221236899999


Q ss_pred             cCCCC
Q 025534          182 DLADP  186 (251)
Q Consensus       182 D~~~~  186 (251)
                      |+|..
T Consensus       117 NlPy~  121 (271)
T 3fut_A          117 NLPYH  121 (271)
T ss_dssp             EECSS
T ss_pred             cCccc
Confidence            98643

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.85  E-value=1.7e-09  Score=92.70  Aligned_cols=104  Identities=21%  Similarity=0.140  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.+.+|||||||.|-++..+....+..+++++|+|+.+++++++++..++     .+.++...|...-  ..+++||+|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~D~~~~--~p~~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVADLLED--RLDEPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEECCTTTS--CCCSCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEeeeccc--CCCCCcchHH
Confidence            56899999999999999988877667899999999999999999988653     4588999995432  3468999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +...-|..    +.--....| . +.+.|+++|+++-
T Consensus       204 ~lkti~~L----e~q~kg~g~-~-ll~aL~~~~vvVS  234 (281)
T 3lcv_B          204 LLKTLPCL----ETQQRGSGW-E-VIDIVNSPNIVVT  234 (281)
T ss_dssp             ETTCHHHH----HHHSTTHHH-H-HHHHSSCSEEEEE
T ss_pred             HHHHHHHh----hhhhhHHHH-H-HHHHhCCCCEEEe
Confidence            88652210    000011345 4 5688999998874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.83  E-value=4.1e-09  Score=94.64  Aligned_cols=98  Identities=21%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||||||+|..+..+++..+..+++++|+ |.+++.+++          .++++++.+|+++.  . ++. |+|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-p~~-D~v~~  265 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFKE--V-PSG-DTILM  265 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTC--C-CCC-SEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCCC--C-CCC-CEEEe
Confidence            458999999999999999988655578999999 988887664          26899999998762  2 233 99998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-+.. ..   -....+++. +++.|+|||.+++..
T Consensus       266 ~~vlh~~-~d---~~~~~~L~~-~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          266 KWILHDW-SD---QHCATLLKN-CYDALPAHGKVVLVQ  298 (364)
T ss_dssp             ESCGGGS-CH---HHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             hHHhccC-CH---HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            7542210 10   012467888 799999999888753

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.82  E-value=4e-09  Score=97.20  Aligned_cols=113  Identities=14%  Similarity=0.056  Sum_probs=80.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-------------CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-------------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-------------~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      ...+|||+|||+|+++..+.++-             ...+++++|+|+.++++|+.++...+.  ...+++++++|....
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~--~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI--GTDRSPIVCEDSLEK  248 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC--CSSCCSEEECCTTTS
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC--CcCCCCEeeCCCCCC
Confidence            35689999999999988877641             125799999999999999998765531  112678999997654


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCcccC-----C------ccHHHHHHHHcccCCCCcEEEEec
Q 025534          169 LESRKESYDVIIGDLADPIEGGPCYK-----L------YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p~~~-----l------~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .  ..++||+|++|||..........     +      ....|++. +.++|+|||++++-.
T Consensus       249 ~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          249 E--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVL  307 (445)
T ss_dssp             C--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             c--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHH-HHHHhccCCEEEEEE
Confidence            2  23589999999873221010000     0      12478898 689999999887654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.81  E-value=6.1e-09  Score=89.44  Aligned_cols=82  Identities=17%  Similarity=0.116  Sum_probs=64.7

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--CCCCC---CCeEEEEcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSD---PRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~---~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+|||+|||.|..+..+++. + .+|++||+++.+.+++++.+....  ...+.   .+++++++|+.++++...++||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~-g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            79999999999999999987 3 479999999999888877654211  00111   47999999999998765567999


Q ss_pred             EEEcCCCCC
Q 025534          179 IIGDLADPI  187 (251)
Q Consensus       179 Ii~D~~~~~  187 (251)
                      |++||+.+.
T Consensus       168 V~lDP~y~~  176 (258)
T 2oyr_A          168 VYLDPMFPH  176 (258)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCCCC
Confidence            999997554

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.81  E-value=3.8e-09  Score=87.01  Aligned_cols=86  Identities=21%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+.     .+++++|+++.                   +++++.+|+.+ +...+++||+|+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~v~  120 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQ-VPLEDESVDVAV  120 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTS-CSCCTTCEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEecccc-CCCCCCCEeEEE
Confidence            456899999999999988762     58999999987                   34567778765 223357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.       .....+++. +.++|+|||.+++..
T Consensus       121 ~~~~l~~-------~~~~~~l~~-~~~~L~~gG~l~i~~  151 (215)
T 2zfu_A          121 FCLSLMG-------TNIRDFLEE-ANRVLKPGGLLKVAE  151 (215)
T ss_dssp             EESCCCS-------SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eehhccc-------cCHHHHHHH-HHHhCCCCeEEEEEE
Confidence            8754332       113578888 799999999988754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.81  E-value=2.1e-08  Score=85.17  Aligned_cols=76  Identities=21%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|++||+|+.+++.+++++..      .++++++.+|+.++-......| .|+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~~-~vv   99 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFPKNQSY-KIF   99 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCCSSCCC-EEE
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCcccCCCe-EEE
Confidence            356799999999999999999874  6899999999999999998652      2589999999877522112345 577


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      +|++.
T Consensus       100 ~nlPy  104 (244)
T 1qam_A          100 GNIPY  104 (244)
T ss_dssp             EECCG
T ss_pred             EeCCc
Confidence            77753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.79  E-value=1.7e-08  Score=87.25  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~  178 (251)
                      ++.++|++-+|+|.++.++++ .. .+++.||.+++.++..++++..      .++++++..|+..++..   ..++||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~-d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQ-DRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TT-SEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CC-CeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence            467799999999999999998 33 7999999999999999999863      36899999999998864   3457999


Q ss_pred             EEEcCCCCCCCCcccCCcc--HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534          179 IIGDLADPIEGGPCYKLYT--KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~--~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F  242 (251)
                      |++|||...   .  ..+.  .+.+.+  ...+.|+|+++++.  |  ....+....+.+.|++.-
T Consensus       163 VfiDPPYe~---k--~~~~~vl~~L~~--~~~r~~~Gi~v~WY--P--i~~~~~~~~~~~~l~~~~  217 (283)
T 2oo3_A          163 IFIDPSYER---K--EEYKEIPYAIKN--AYSKFSTGLYCVWY--P--VVNKAWTEQFLRKMREIS  217 (283)
T ss_dssp             EEECCCCCS---T--THHHHHHHHHHH--HHHHCTTSEEEEEE--E--ESSHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCC---C--cHHHHHHHHHHH--hCccCCCeEEEEEE--e--ccchHHHHHHHHHHHhcC
Confidence            999997431   0  1111  122332  34688999999986  3  345666778888887543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.76  E-value=7.2e-09  Score=87.85  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +.|.+|||||||.|-++..+.   +..+++++|||+.+++.+++++..+     .++.++...|...-  ..+++||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~--~~~~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCA--PPAEAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTS--CCCCBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccC--CCCCCcchHH
Confidence            568999999999999998776   4579999999999999999997754     36789999996543  2457999998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +...-|..    +.......+ . +.+.|+++|+++-
T Consensus       174 llk~lh~L----E~q~~~~~~-~-ll~aL~~~~vvVs  204 (253)
T 3frh_A          174 IFKLLPLL----EREQAGSAM-A-LLQSLNTPRMAVS  204 (253)
T ss_dssp             EESCHHHH----HHHSTTHHH-H-HHHHCBCSEEEEE
T ss_pred             HHHHHHHh----hhhchhhHH-H-HHHHhcCCCEEEE
Confidence            87542110    011112344 3 4568999998774

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.75  E-value=6.9e-09  Score=90.84  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=59.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++.  ..+|++||+|+.+++.+++++...+    .++++++.+|+.++-   ..+||+|+
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~~---~~~~D~Vv  111 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKTV---FPKFDVCT  111 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSSC---CCCCSEEE
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhCC---cccCCEEE
Confidence            45679999999999999999886  3699999999999999999876432    268999999987642   35899999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      +|++.
T Consensus       112 ~n~py  116 (299)
T 2h1r_A          112 ANIPY  116 (299)
T ss_dssp             EECCG
T ss_pred             EcCCc
Confidence            99874

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.73  E-value=8.3e-09  Score=97.49  Aligned_cols=115  Identities=10%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCC---------------CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKT---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~---------------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~  165 (251)
                      +.+.+|||.+||+|+++..++++-.               ..++.++|+|+.++++|+.++.+.+   .+.++.+.++|.
T Consensus       243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g---i~~~i~i~~gDt  319 (544)
T 3khk_A          243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG---IDFNFGKKNADS  319 (544)
T ss_dssp             CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT---CCCBCCSSSCCT
T ss_pred             cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC---CCcccceeccch
Confidence            4456999999999998877654210               2479999999999999999877654   123455588886


Q ss_pred             HHHHhcCCCceeEEEEcCCCCC---CC--------------------CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          166 RAELESRKESYDVIIGDLADPI---EG--------------------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       166 ~~~l~~~~~~fD~Ii~D~~~~~---~~--------------------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-.....+||+|++|||...   ..                    .|...-....|++. +.+.|+|||++++-.
T Consensus       320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~aiVl  395 (544)
T 3khk_A          320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH-MLYHLAPTGSMALLL  395 (544)
T ss_dssp             TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH-HHHHhccCceEEEEe
Confidence            5432222468999999998432   10                    01011112368888 689999999877654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.70  E-value=9.9e-08  Score=81.36  Aligned_cols=75  Identities=31%  Similarity=0.467  Sum_probs=59.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~~~~fD~I  179 (251)
                      .++.+|||||||+|.++..+++. +..+|++||+|+.+++.++++ .       .++++++++|+.++- ....+.| .|
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~~~~~~~~~~-~v   99 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKFPFCSLGKEL-KV   99 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTCCGGGSCSSE-EE
T ss_pred             CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhCChhHccCCc-EE
Confidence            35679999999999999999987 347999999999999999987 2       258999999987752 2211234 78


Q ss_pred             EEcCCC
Q 025534          180 IGDLAD  185 (251)
Q Consensus       180 i~D~~~  185 (251)
                      +.|+|.
T Consensus       100 v~NlPy  105 (249)
T 3ftd_A          100 VGNLPY  105 (249)
T ss_dssp             EEECCT
T ss_pred             EEECch
Confidence            888764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.69  E-value=5.8e-08  Score=91.61  Aligned_cols=115  Identities=11%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~f  176 (251)
                      ...+|||.+||+|+++..++++   .+..++.++|+|+.++++|+.++.+++.  ..+++++.++|.+..  -.....+|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~~~~I~~gDtL~~d~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV--PIENQFLHNADTLDEDWPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC--CcCccceEecceecccccccccccc
Confidence            4579999999999988877765   2346899999999999999998765531  225789999997653  11234789


Q ss_pred             eEEEEcCCCC--CCCC------c---------ccCCccHHHHHHHHcccCC-CCcEEEEec
Q 025534          177 DVIIGDLADP--IEGG------P---------CYKLYTKSFYEFVVKPRLN-PEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~--~~~~------p---------~~~l~~~ef~~~~~~~~L~-pgG~l~~~~  219 (251)
                      |+|+.|||..  +...      +         ...-....|++. +.+.|+ |||++++-.
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~-~l~~Lk~~gGr~a~Vl  358 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLH-GYYHLKQDNGVMAIVL  358 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHH-HHHTBCTTTCEEEEEE
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHH-HHHHhCCCceeEEEEe
Confidence            9999999842  1100      0         000112358888 689999 999887654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.69  E-value=1.4e-08  Score=90.64  Aligned_cols=97  Identities=16%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||||||+|.++..+++..+..+++++|+ +.+++.++++          ++++++.+|+++  . .+ .||+|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~--~-~~-~~D~v~~  257 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN----------ENLNFVGGDMFK--S-IP-SADAVLL  257 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC----------SSEEEEECCTTT--C-CC-CCSEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC----------CCcEEEeCccCC--C-CC-CceEEEE
Confidence            458999999999999999998755568999999 7888766641          469999999876  2 22 5999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCC---CcEEEEe
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQ  218 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p---gG~l~~~  218 (251)
                      ...-+.. ..   .....+++. +++.|+|   ||.+++.
T Consensus       258 ~~vlh~~-~d---~~~~~~l~~-~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          258 KWVLHDW-ND---EQSLKILKN-SKEAISHKGKDGKVIII  292 (358)
T ss_dssp             ESCGGGS-CH---HHHHHHHHH-HHHHTGGGGGGCEEEEE
T ss_pred             cccccCC-CH---HHHHHHHHH-HHHhCCCCCCCcEEEEE
Confidence            7542211 11   012378888 7999999   9988764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.68  E-value=1.6e-07  Score=82.21  Aligned_cols=112  Identities=21%  Similarity=0.316  Sum_probs=73.7

Q ss_pred             CCeEEEEecCchHHHHHHH----hcCCCcEE--EEEECChH---------HHHHHHhchhcccCCCCCC--CeEEEEcch
Q 025534          103 PKTIFIMGGGEGSTAREIL----RHKTVEKV--VMCDIDEE---------VVEFCKSYLVVNKEAFSDP--RLELVINDA  165 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~----~~~~~~~v--~~VEid~~---------vi~~a~~~~~~~~~~~~~~--rv~~~~~D~  165 (251)
                      .-+||++|.|+|......+    +..+..++  +.+|.++-         .-++.+..+... ..+...  .++++.+|+
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~-p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERV-PEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHC-SEEECSSEEEEEEESCH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhC-ccccCCcEEEEEEechH
Confidence            3579999999998543322    22333444  55564321         111122111100 001223  456899999


Q ss_pred             HHHHhcCC-CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          166 RAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       166 ~~~l~~~~-~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.+.+.. .++|+|+.|+|.|.. +|  .+++.++|+. +.++++|||++++.+
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~k-NP--eLWs~e~f~~-l~~~~~pgg~laTYt  226 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYK-NP--ELWTLDFLSL-IKERIDEKGYWVSYS  226 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTT-SG--GGGSHHHHHH-HHTTEEEEEEEEESC
T ss_pred             HHHHhhhcccceeEEEeCCCCccc-Cc--ccCCHHHHHH-HHHHhCCCcEEEEEe
Confidence            99998754 489999999998863 44  6999999999 899999999999865

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.67  E-value=2.5e-08  Score=94.10  Aligned_cols=115  Identities=8%  Similarity=-0.007  Sum_probs=80.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC---C---------------CcEEEEEECChHHHHHHHhchhcccCCCCC---CCeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK---T---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSD---PRLEL  160 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~---~---------------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~---~rv~~  160 (251)
                      ...+|||.+||+|+++..+.++-   .               ..+++++|+|+.++++|+.++.+.+.  ..   .+.++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi--~~~~~~~~~I  246 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI--EGNLDHGGAI  246 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC--CCBGGGTBSE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC--CccccccCCe
Confidence            35689999999999987776531   1               13799999999999999998765431  11   13789


Q ss_pred             EEcchHHHHhcCCCceeEEEEcCCCCCCCCc--------ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          161 VINDARAELESRKESYDVIIGDLADPIEGGP--------CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       161 ~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p--------~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++|.........++||+|+.|||.......        ...-....|++. +.+.|+|||++++-.
T Consensus       247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVV  312 (541)
T ss_dssp             EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH-HHHHhCCCCEEEEEe
Confidence            9999876533234689999999974221000        000112468888 689999999887654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.66  E-value=3.6e-08  Score=95.78  Aligned_cols=113  Identities=8%  Similarity=-0.015  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC------------------------------------------CCcEEEEEECChHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK------------------------------------------TVEKVVMCDIDEEV  138 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~------------------------------------------~~~~v~~VEid~~v  138 (251)
                      .....|||.+||+|+++.+++...                                          ...+|+++|+|+.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            345789999999999998877531                                          11479999999999


Q ss_pred             HHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc---ccCCCCcE
Q 025534          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK---PRLNPEGI  214 (251)
Q Consensus       139 i~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~---~~L~pgG~  214 (251)
                      ++.|+++....+   ....+++.++|+.++.... .++||+|++|||.....+.  .-...++|+. +.   +.+.|||.
T Consensus       269 v~~A~~N~~~ag---v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~--~~~l~~ly~~-l~~~lk~~~~g~~  342 (703)
T 3v97_A          269 IQRARTNARLAG---IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS--EPALIALHSL-LGRIMKNQFGGWN  342 (703)
T ss_dssp             HHHHHHHHHHTT---CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C--CHHHHHHHHH-HHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHcC---CCCceEEEECChhhCccccccCCCCEEEeCCCccccccc--hhHHHHHHHH-HHHHHHhhCCCCe
Confidence            999999987553   2356999999998853221 2389999999985332111  1112345554 33   44557998


Q ss_pred             EEEec
Q 025534          215 FVTQA  219 (251)
Q Consensus       215 l~~~~  219 (251)
                      +.+-+
T Consensus       343 ~~ilt  347 (703)
T 3v97_A          343 LSLFS  347 (703)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.65  E-value=6.5e-07  Score=80.28  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--CCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+|||+++|.|+=+.+++.......|+++|+++.=++..++++...+  ......++++...|++.+-....++||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            34579999999999988888876555689999999999998888765321  1112357999999999886656689999


Q ss_pred             EEEcCCCCCC------CCcc-cCC-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          179 IIGDLADPIE------GGPC-YKL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       179 Ii~D~~~~~~------~~p~-~~l-----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      |++|+|....      ..|. ...           ...+.+.. +.+.|||||+|+--+++....-+......+++...
T Consensus       227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~  304 (359)
T 4fzv_A          227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-GLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLA  304 (359)
T ss_dssp             EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHH-HHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHH
T ss_pred             EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCC
Confidence            9999984321      1111 011           12456666 57899999999876665421223334444544433

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.63  E-value=2.4e-08  Score=79.82  Aligned_cols=88  Identities=11%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      .++.+||+||||.               | .+|+++.|++.|++.++        .+++++.+|+.+....  .+++||+
T Consensus        11 ~~g~~vL~~~~g~---------------v-~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------S-PVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             CTTSEEEEEECTT---------------S-CHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             CCCCEEEEecCCc---------------e-eeeCCHHHHHHHHHhcc--------cCcEEEEechhcCccccCCCCCEeE
Confidence            4678999999985               1 39999999999998753        2489999998875321  4578999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |++...-++. .+    ...+++++ ++++|||||.+++.
T Consensus        67 V~~~~~l~~~-~~----~~~~~l~~-~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           67 ILSGLVPGST-TL----HSAEILAE-IARILRPGGCLFLK  100 (176)
T ss_dssp             EEECCSTTCC-CC----CCHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEECChhhhc-cc----CHHHHHHH-HHHHCCCCEEEEEE
Confidence            9996543331 01    12688999 79999999999885

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.62  E-value=4.7e-08  Score=95.14  Aligned_cols=137  Identities=11%  Similarity=0.036  Sum_probs=84.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCC---CcEEEEEECChHHHHHH--HhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFC--KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a--~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      .+.+|||.|||+|+++..++++.+   ..+++++|+|+.+++.|  +.++..+.-....+...+..+|....-....++|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            467999999999999999887532   35799999999999999  5544332110112234666777655211124689


Q ss_pred             eEEEEcCCCCC-CCCccc-----------------C-----CccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHH
Q 025534          177 DVIIGDLADPI-EGGPCY-----------------K-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVF  231 (251)
Q Consensus       177 D~Ii~D~~~~~-~~~p~~-----------------~-----l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~  231 (251)
                      |+|++|||... ...+..                 .     -....|++. +.+.|+|||++++-....  +.  .....
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~-Al~lLKpGGrLAfIlP~s--~Lf~sg~~~  477 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLEL-VTELVQDGTVISAIMPKQ--YLTAQGNES  477 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHH-HHHHSCTTCEEEEEEETH--HHHCCSHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHH-HHHhcCCCcEEEEEEChH--HhccCChHH
Confidence            99999998421 000000                 0     012457888 689999999988754221  22  12234


Q ss_pred             HHHHHHHHhh
Q 025534          232 SCIYNTLRQV  241 (251)
Q Consensus       232 ~~i~~~l~~~  241 (251)
                      ..+.+.|.+.
T Consensus       478 kkLRk~LLe~  487 (878)
T 3s1s_A          478 KAFREFLVGN  487 (878)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHhC
Confidence            4555555443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.57  E-value=7.6e-08  Score=92.05  Aligned_cols=102  Identities=16%  Similarity=0.270  Sum_probs=72.2

Q ss_pred             CeEEEEecCchHHHHHHHh---cCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          104 KTIFIMGGGEGSTAREILR---HKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~---~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +.|||+|||+|-+....++   ... ..+|.+||.||. ...+++....++   -..+|+++++|.+++  +.+++.|+|
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~---~~dkVtVI~gd~eev--~LPEKVDII  432 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE---WGSQVTVVSSDMREW--VAPEKADII  432 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT---TGGGEEEEESCTTTC--CCSSCEEEE
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc---CCCeEEEEeCcceec--cCCcccCEE
Confidence            4699999999998444433   321 127899999984 556777665543   246899999999886  356899999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      |+......  .. .+. ..+.+.. ..+.|||||+++
T Consensus       433 VSEwMG~f--Ll-~E~-mlevL~A-rdr~LKPgGimi  464 (637)
T 4gqb_A          433 VSELLGSF--AD-NEL-SPECLDG-AQHFLKDDGVSI  464 (637)
T ss_dssp             ECCCCBTT--BG-GGC-HHHHHHH-HGGGEEEEEEEE
T ss_pred             EEEcCccc--cc-ccC-CHHHHHH-HHHhcCCCcEEc
Confidence            99886433  11 122 1356666 589999999986

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.56  E-value=1.8e-07  Score=89.87  Aligned_cols=105  Identities=21%  Similarity=0.352  Sum_probs=73.8

Q ss_pred             CCeEEEEecCchHHHHHHHhc----C---------CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534          103 PKTIFIMGGGEGSTAREILRH----K---------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~----~---------~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l  169 (251)
                      .+-|||+|||+|.+...+++.    .         ...+|.+||.|+.++...++... ++  + ..+|+++.+|.+++-
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~-~d~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--W-KRRVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--T-TTCSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--C-CCeEEEEeCchhhcc
Confidence            356999999999996433221    1         12499999999987766555433 22  2 368999999999984


Q ss_pred             h----cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          170 E----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       170 ~----~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      .    ...++.|+||+......  +. .. ...+.+.. +.+.|||||+++
T Consensus       486 lp~~~~~~ekVDIIVSElmGsf--l~-nE-L~pe~Ld~-v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          486 GIAKDRGFEQPDIIVSELLGSF--GD-NE-LSPECLDG-VTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHTTCCCCSEEEECCCBTT--BG-GG-SHHHHHHT-TGGGSCTTCEEE
T ss_pred             cccccCCCCcccEEEEeccccc--cc-hh-ccHHHHHH-HHHhCCCCcEEE
Confidence            2    11589999999976432  11 12 24678887 689999999987

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.56  E-value=3.7e-08  Score=84.68  Aligned_cols=135  Identities=11%  Similarity=0.034  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ....+|||||||.|+.+..+++..++.+++++++.-.+.     ..+...... ..++..+.+|+ +.....+++||+|+
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-----~~pi~~~~~-g~~ii~~~~~~-dv~~l~~~~~DlVl  145 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-----EKPMNVQSL-GWNIITFKDKT-DIHRLEPVKCDTLL  145 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-----CCCCCCCBT-TGGGEEEECSC-CTTTSCCCCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-----ccccccCcC-CCCeEEEeccc-eehhcCCCCccEEE
Confidence            345689999999999999988765667889999874431     001110000 12344445543 11122357899999


Q ss_pred             EcCCCCCCCCcc-cCCccHHHHHHHHcccCCCC-cEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       181 ~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pg-G~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      +|.... ...+. .+..+.+.++. +.+.|+|| |.|++..-.|  +  .+.+..+++.|+..|..|..+
T Consensus       146 sD~apn-sG~~~~D~~rs~~LL~~-a~~~LkpG~G~FV~KVf~p--y--g~~~~~l~~~lk~~F~~V~~~  209 (277)
T 3evf_A          146 CDIGES-SSSSVTEGERTVRVLDT-VEKWLACGVDNFCVKVLAP--Y--MPDVLEKLELLQRRFGGTVIR  209 (277)
T ss_dssp             ECCCCC-CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT--T--SHHHHHHHHHHHHHHCCEEEC
T ss_pred             ecCccC-cCchHHHHHHHHHHHHH-HHHHhCCCCCeEEEEecCC--C--CccHHHHHHHHHHhcCCEEEE
Confidence            997533 21110 11112233555 57899999 9999976433  2  345778899999999988654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.54  E-value=1.1e-07  Score=82.53  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCC--cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcCCC---
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKE---  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~~~---  174 (251)
                      .++.+|||||||+|.++..+++....  .+|++||+|+.+++.+++++  .      ++++++++|+.++- .....   
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~------~~v~~i~~D~~~~~~~~~~~~~~  112 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G------ELLELHAGDALTFDFGSIARPGD  112 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G------GGEEEEESCGGGCCGGGGSCSSS
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C------CCcEEEECChhcCChhHhccccc
Confidence            35679999999999999999986321  23999999999999999873  2      47999999998752 11111   


Q ss_pred             -ceeEEEEcCC
Q 025534          175 -SYDVIIGDLA  184 (251)
Q Consensus       175 -~fD~Ii~D~~  184 (251)
                       ..+.|+.|+|
T Consensus       113 ~~~~~vv~NlP  123 (279)
T 3uzu_A          113 EPSLRIIGNLP  123 (279)
T ss_dssp             SCCEEEEEECC
T ss_pred             CCceEEEEccC
Confidence             3457888876

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.54  E-value=1.8e-07  Score=81.24  Aligned_cols=108  Identities=12%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-----CCcEEEEEECChH--------------------------HHHHHHhchhcc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEE--------------------------VVEFCKSYLVVN  149 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~--------------------------vi~~a~~~~~~~  149 (251)
                      ..|++||++|+..|..+..++...     +..+|+++|..+.                          .++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            457899999999999887765421     2468999997421                          366788887643


Q ss_pred             cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       150 ~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +  +..++++++.+|+.+.+.+. .++||+|++|.-.        .-.+.++++. +..+|+|||++++.-
T Consensus       185 g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--------y~~~~~~Le~-~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          185 D--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--------YESTWDTLTN-LYPKVSVGGYVIVDD  244 (282)
T ss_dssp             T--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred             C--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--------cccHHHHHHH-HHhhcCCCEEEEEcC
Confidence            2  22479999999999998764 4789999999621        1124678888 799999999998843

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.53  E-value=7.7e-08  Score=82.22  Aligned_cols=75  Identities=12%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcE--EEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcC---CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR---KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~--v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~---~~  174 (251)
                      .+..+|||||||+|.++. +.+ .  .+  |++||+|+.+++.+++++..      .++++++++|+.++ +...   .+
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~   89 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMG   89 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHT
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCHHHhhcccC
Confidence            345789999999999999 654 3  35  99999999999999998652      25899999999874 2111   12


Q ss_pred             ceeEEEEcCCC
Q 025534          175 SYDVIIGDLAD  185 (251)
Q Consensus       175 ~fD~Ii~D~~~  185 (251)
                      ..|.|+.++|.
T Consensus        90 ~~~~vvsNlPY  100 (252)
T 1qyr_A           90 QPLRVFGNLPY  100 (252)
T ss_dssp             SCEEEEEECCT
T ss_pred             CceEEEECCCC
Confidence            45789999864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.46  E-value=9.2e-09  Score=87.16  Aligned_cols=106  Identities=16%  Similarity=0.299  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..  .+|++||+|+.+++.+++++..      .++++++.+|+.++-...+++| .|+
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~f-~vv   98 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQFPNKQRY-KIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc------CCceEEEECChhhcCcccCCCc-EEE
Confidence            356789999999999999999873  6999999999999999887651      3689999999887531113579 788


Q ss_pred             EcCCCCCCCCcc-c-----CCccHHHH----HHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPC-Y-----KLYTKSFY----EFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~-~-----~l~~~ef~----~~~~~~~L~pgG~l~~  217 (251)
                      +|+|.... .+. .     ......++    +. +.++|+|||.+++
T Consensus        99 ~n~Py~~~-~~~~~~~~~~~~~~~~~lm~q~e~-a~rll~~~G~l~v  143 (245)
T 1yub_A           99 GNIPYHLS-TQIIKKVVFESRASDIYLIVEEGF-YKRTLDIHRTLGL  143 (245)
T ss_dssp             EECCSSSC-HHHHHHHHHHCCCEEEEEEEESSH-HHHHHCGGGSHHH
T ss_pred             EeCCcccc-HHHHHHHHhCCCCCeEEEEeeHHH-HHHHhCCCCchhh
Confidence            88764321 000 0     00111222    44 5788999987654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.38  E-value=1.1e-07  Score=81.96  Aligned_cols=133  Identities=14%  Similarity=0.038  Sum_probs=83.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc--chHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~--D~~~~l~~~~~~fD~  178 (251)
                      ....+|||||||.|+.+..+++..++.+|.++|+...+...+...  ..    ...++.....  |...   ..++++|+
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--~~----~g~~ii~~~~~~dv~~---l~~~~~Dv  159 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--TT----LGWNLIRFKDKTDVFN---MEVIPGDT  159 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--CB----TTGGGEEEECSCCGGG---SCCCCCSE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--cc----CCCceEEeeCCcchhh---cCCCCcCE
Confidence            345689999999999999988765677899999976532111110  00    0123332332  4322   24578999


Q ss_pred             EEEcCCCCCCCCc-ccCCccHHHHHHHHcccCCCC--cEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          179 IIGDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       179 Ii~D~~~~~~~~p-~~~l~~~ef~~~~~~~~L~pg--G~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      |++|.... ...+ ..+.-+.+.++. +.+.|+||  |.|++..-.|  +  .+.+..+++.|+..|..|..+
T Consensus       160 VLSDmApn-sG~~~~D~~rs~~LL~~-A~~~Lk~g~~G~Fv~KvF~p--y--g~~~~~l~~~lk~~F~~V~~~  226 (282)
T 3gcz_A          160 LLCDIGES-SPSIAVEEQRTLRVLNC-AKQWLQEGNYTEFCIKVLCP--Y--TPLIMEELSRLQLKHGGGLVR  226 (282)
T ss_dssp             EEECCCCC-CSCHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEEESCC--C--SHHHHHHHHHHHHHHCCEEEC
T ss_pred             EEecCccC-CCChHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEecC--C--CccHHHHHHHHHHhcCCEEEE
Confidence            99997643 2111 011122234555 57899999  9999986332  1  345678899999999988654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.26  E-value=1.8e-06  Score=74.81  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l~~~~~~fD~I  179 (251)
                      .+.++||||||+.|+.+..+++..++..|+++|+.......     +.....+..+-+.+..+ |.+   ...++++|+|
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~-----P~~~~~~~~~iv~~~~~~di~---~l~~~~~DlV  151 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEK-----PIHMQTLGWNIVKFKDKSNVF---TMPTEPSDTL  151 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCC-----CCCCCBTTGGGEEEECSCCTT---TSCCCCCSEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccc-----cccccccCCceEEeecCceee---ecCCCCcCEE
Confidence            46789999999999999999986567789999996532100     00000000011222212 322   2235789999


Q ss_pred             EEcCCCCCCCCc-ccCCccHHHHHHHHcccCCCC-cEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          180 IGDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       180 i~D~~~~~~~~p-~~~l~~~ef~~~~~~~~L~pg-G~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      ++|.... ...+ ..+.-+.+.++. +.+.|+|| |.|++..-.|  +  .+.+..++..|+..|..|..+
T Consensus       152 lsD~APn-sG~~~~D~~rs~~LL~~-A~~~LkpG~G~FV~KvF~~--y--G~~~~~ll~~lk~~F~~V~~~  216 (300)
T 3eld_A          152 LCDIGES-SSNPLVERDRTMKVLEN-FERWKHVNTENFCVKVLAP--Y--HPDVIEKLERLQLRFGGGIVR  216 (300)
T ss_dssp             EECCCCC-CSSHHHHHHHHHHHHHH-HHHHCCTTCCEEEEEESST--T--SHHHHHHHHHHHHHHCCEEEC
T ss_pred             eecCcCC-CCCHHHHHHHHHHHHHH-HHHHhcCCCCcEEEEeccc--c--CccHHHHHHHHHHhCCcEEEE
Confidence            9997633 2111 011112334555 57899999 9999986433  2  345678899999999988654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.20  E-value=7.3e-06  Score=70.79  Aligned_cols=73  Identities=30%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---HhcCC-Ccee
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l~~~~-~~fD  177 (251)
                      ++..++|.+||.|+-+..+++. + .+|+++|.||.+++.|++ +.      . +|++++++|..++   +...+ +++|
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~-~-g~VigiD~Dp~Ai~~A~~-L~------~-~rv~lv~~~f~~l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER-G-GRVIGLDQDPEAVARAKG-LH------L-PGLTVVQGNFRHLKRHLAALGVERVD   91 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHH-TC------C-TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC-C-CEEEEEeCCHHHHHHHHh-hc------c-CCEEEEECCcchHHHHHHHcCCCCcC
Confidence            4578999999999999999997 3 699999999999999998 63      1 5899999999876   44333 5799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      .|+.|+.
T Consensus        92 gIL~DLG   98 (285)
T 1wg8_A           92 GILADLG   98 (285)
T ss_dssp             EEEEECS
T ss_pred             EEEeCCc
Confidence            9999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.14  E-value=6.2e-06  Score=79.52  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcC------------CCcEEEEEEC---ChHHHHHHHhchhc------------cc---C-
Q 025534          103 PKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDI---DEEVVEFCKSYLVV------------NK---E-  151 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEi---d~~vi~~a~~~~~~------------~~---~-  151 (251)
                      .-+||++|.|+|......++..            ..-+++.+|.   +++.+..+-++++.            +.   + 
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3589999999999765554321            1136899999   88888754443221            00   0 


Q ss_pred             ---CCC--CCCeEEEEcchHHHHhcC----CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          152 ---AFS--DPRLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       152 ---~~~--~~rv~~~~~D~~~~l~~~----~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                         .+.  .-+++++.+|+++.+.+.    ..+||+|++|.|.|.. +|  .+++.++|+. +.++++|||+++..+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CG--GGSCHHHHHH-HHHHEEEEEEEEESC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence               011  245678999999999864    3679999999997752 34  6999999999 899999999998754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.11  E-value=4.2e-06  Score=80.92  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC--------C----CcEEEEEEC---ChHHHHHHHhchhc------------c----c
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK--------T----VEKVVMCDI---DEEVVEFCKSYLVV------------N----K  150 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~--------~----~~~v~~VEi---d~~vi~~a~~~~~~------------~----~  150 (251)
                      ++-+||++|.|+|.....+.+..        .    .-+++.+|.   +.+.+..+-+.++.            +    +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34689999999999766554421        1    147899999   44444433322210            0    0


Q ss_pred             ---CCCCCC--CeEEEEcchHHHHhcC----CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          151 ---EAFSDP--RLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       151 ---~~~~~~--rv~~~~~D~~~~l~~~----~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                         -.+.+.  +++++.+|+++.+.+.    ..++|.|++|.|.|.. +|  .+++.++|.. +.++++|||.+....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NP--DMWNEQLFNA-MARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CC--TTCSHHHHHH-HHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence               011222  5789999999999764    4689999999998763 44  6999999999 899999999998754

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.09  E-value=1.4e-05  Score=69.10  Aligned_cols=121  Identities=21%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEec------CchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC
Q 025534          100 HPNPKTIFIMGG------GEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       100 ~~~~~~VL~iG~------G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      .|...+||++|+      ..|+.. +.+  .+..+.|+++|+.+-..               ++. .++.+|....  ..
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~VLr~~--~p~g~~VVavDL~~~~s---------------da~-~~IqGD~~~~--~~  166 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAVLRQW--LPTGTLLVDSDLNDFVS---------------DAD-STLIGDCATV--HT  166 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHH--SCTTCEEEEEESSCCBC---------------SSS-EEEESCGGGE--EE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHHHHHh--CCCCcEEEEeeCccccc---------------CCC-eEEEcccccc--cc
Confidence            577899999996      556632 222  23225899999986431               123 4499997653  23


Q ss_pred             CCceeEEEEcCCCCCCC---Ccc-cCC-ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          173 KESYDVIIGDLADPIEG---GPC-YKL-YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~---~p~-~~l-~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      ..+||+|++|.......   .+. ... +.+..+.- ++++|+|||.|++..-     .... . ..+..+++.|..|..
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdf-A~~~LkpGGsFvVKVF-----QGsg-~-~~L~~lrk~F~~VK~  238 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKIT-----EHSW-N-ADLYKLMGHFSWWTA  238 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEEC-----SSSC-C-HHHHHHHTTEEEEEE
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHH-HHHhCcCCCEEEEEEe-----cCCC-H-HHHHHHHhhCCeEEE
Confidence            57899999998643221   110 011 12333443 5789999999998762     1111 1 334556678887776


Q ss_pred             e
Q 025534          248 L  248 (251)
Q Consensus       248 ~  248 (251)
                      +
T Consensus       239 f  239 (344)
T 3r24_A          239 F  239 (344)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.07  E-value=1.5e-05  Score=67.66  Aligned_cols=130  Identities=14%  Similarity=0.032  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe---EEEEc-chHHHHhcCCCc
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL---ELVIN-DARAELESRKES  175 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv---~~~~~-D~~~~l~~~~~~  175 (251)
                      ..+..+||||||+-|+.+..+++..++..|.+..+....     .-.+...   ..+.+   ++..+ |.++   ..+.+
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-----~~~P~~~---~~~Gv~~i~~~~G~Df~~---~~~~~  139 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-----HEEPMLM---QSYGWNIVTMKSGVDVFY---KPSEI  139 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-----SCCCCCC---CSTTGGGEEEECSCCGGG---SCCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-----ccCCCcc---cCCCceEEEeeccCCccC---CCCCC
Confidence            345789999999999999999886444455555554331     0111110   11344   44447 9776   23468


Q ss_pred             eeEEEEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCCc-EEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          176 YDVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG-~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      +|+|++|.... ...+. .+.-+...+.. +.+.|+||| .|++..-.+    ..+.+.+.++.|+..|..+.
T Consensus       140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~-A~~~Lk~gG~~FvvKVFqg----~~~~~~~~l~~lk~~F~~vk  206 (269)
T 2px2_A          140 SDTLLCDIGES-SPSAEIEEQRTLRILEM-VSDWLSRGPKEFCIKILCP----YMPKVIEKLESLQRRFGGGL  206 (269)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEE
T ss_pred             CCEEEeCCCCC-CCccHHHHHHHHHHHHH-HHHHhhcCCcEEEEEECCC----CchHHHHHHHHHHHHcCCEE
Confidence            99999998642 21211 11112224444 468999999 998876322    12567788889999998876

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.07  E-value=2.8e-05  Score=65.24  Aligned_cols=132  Identities=15%  Similarity=0.093  Sum_probs=88.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l~~~~~~fD~I  179 (251)
                      ....+||||||+.|+.+..++...++.+|.++|+-+.-.     ..+..-..+.-+-+++..+ |.+. +  .+.++|.|
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-----e~P~~~~s~gwn~v~fk~gvDv~~-~--~~~~~Dtl  148 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-----EEPVPMSTYGWNIVKLMSGKDVFY-L--PPEKCDTL  148 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-----CCCCCCCCTTTTSEEEECSCCGGG-C--CCCCCSEE
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-----cCcchhhhcCcCceEEEeccceee-c--CCccccEE
Confidence            345699999999999999888877788999999976432     1121111223357899999 9632 2  34789999


Q ss_pred             EEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       180 i~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      +||... ....|. +.--+...++. +.+.|++ |-+++..-.|  . .++ +.+.++.|+..|..+..
T Consensus       149 lcDIge-Ss~~~~vE~~RtlrvLel-a~~wL~~-~~fc~KVl~p--y-~p~-v~e~l~~lq~~fgg~lV  210 (267)
T 3p8z_A          149 LCDIGE-SSPSPTVEESRTIRVLKM-VEPWLKN-NQFCIKVLNP--Y-MPT-VIEHLERLQRKHGGMLV  210 (267)
T ss_dssp             EECCCC-CCSCHHHHHHHHHHHHHH-HGGGCSS-CEEEEEESCC--C-SHH-HHHHHHHHHHHHCCEEE
T ss_pred             EEecCC-CCCChhhhhhHHHHHHHH-HHHhccc-CCEEEEEccC--C-Chh-HHHHHHHHHHHhCCEeE
Confidence            999864 211221 11123345665 5788998 8888888766  2 333 44777888888887654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.82  E-value=5.9e-06  Score=64.49  Aligned_cols=64  Identities=16%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+.+||+||||.| ..+..|+++.+ ..|+++|++|..++                   ++.+|.++-..+.-+.||+|
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~-------------------~v~dDiF~P~~~~Y~~~DLI   93 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGG-------------------IVRDDITSPRMEIYRGAALI   93 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTT-------------------EECCCSSSCCHHHHTTEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccc-------------------eEEccCCCCcccccCCcCEE
Confidence            34679999999999 59999887544 58999999987665                   55566654322112589999


Q ss_pred             -EEcCC
Q 025534          180 -IGDLA  184 (251)
Q Consensus       180 -i~D~~  184 (251)
                       -+++|
T Consensus        94 YsirPP   99 (153)
T 2k4m_A           94 YSIRPP   99 (153)
T ss_dssp             EEESCC
T ss_pred             EEcCCC
Confidence             55654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.81  E-value=2.9e-05  Score=67.13  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l~~~~~~fD~I  179 (251)
                      ....+||||||+.|+.+..++...++.+|.++|+-..-.+     .|..-..+.-+-+.+..+ |++. +.  +.++|+|
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-----~P~~~~ql~w~lV~~~~~~Dv~~-l~--~~~~D~i  164 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-----EPQLVQSYGWNIVTMKSGVDVFY-RP--SECCDTL  164 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-----CCCCCCBTTGGGEEEECSCCTTS-SC--CCCCSEE
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-----CcchhhhcCCcceEEEeccCHhh-CC--CCCCCEE
Confidence            3456999999999999998888777788999999754210     010000111123777777 7643 32  3779999


Q ss_pred             EEcCCCCCCCCcc-cCCccHHHHHHHHcccCCCC-cEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       180 i~D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pg-G~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      ++|..... ..|. +.--+...++. +.+.|+++ |-+++....|  + .+ .+.+.++.|+..|..+..+
T Consensus       165 vcDigeSs-~~~~ve~~Rtl~vLel-~~~wL~~~~~~f~~KVl~p--Y-~~-~v~e~l~~lq~~fgg~lvr  229 (321)
T 3lkz_A          165 LCDIGESS-SSAEVEEHRTIRVLEM-VEDWLHRGPREFCVKVLCP--Y-MP-KVIEKMELLQRRYGGGLVR  229 (321)
T ss_dssp             EECCCCCC-SCHHHHHHHHHHHHHH-HHHHHTTCCCEEEEEESCT--T-SH-HHHHHHHHHHHHHCCEEEC
T ss_pred             EEECccCC-CChhhhhhHHHHHHHH-HHHHhccCCCcEEEEEcCC--C-Ch-HHHHHHHHHHHHhCCEeEe
Confidence            99987322 1221 11122335555 57889998 8999988666  3 23 3447888888888877543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.72  E-value=4.9e-05  Score=71.44  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhc----CC---------CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRH----KT---------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~----~~---------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      .+.+|+|-.||+|++...+.++    ..         ...+.++|+++.+..+|+-++-+++    ....++.++|...+
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg----~~~~~I~~~dtL~~  292 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG----LEYPRIDPENSLRF  292 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT----CSCCEEECSCTTCS
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC----CccccccccccccC
Confidence            3568999999999998766542    11         1369999999999999998876553    23346778887543


Q ss_pred             H-hc--CCCceeEEEEcCCC
Q 025534          169 L-ES--RKESYDVIIGDLAD  185 (251)
Q Consensus       169 l-~~--~~~~fD~Ii~D~~~  185 (251)
                      - ..  ...+||+|+.|||.
T Consensus       293 ~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          293 PLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             CGGGCCGGGCBSEEEECCCS
T ss_pred             chhhhcccccceEEEecCCC
Confidence            1 11  13579999999984

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.67  E-value=0.00027  Score=63.69  Aligned_cols=111  Identities=11%  Similarity=-0.024  Sum_probs=69.1

Q ss_pred             CCeEEEEecCchHHHHHHHhc-----------------CCCcEEEEEECC-----------hHHHHHHHhchhcccCCCC
Q 025534          103 PKTIFIMGGGEGSTAREILRH-----------------KTVEKVVMCDID-----------EEVVEFCKSYLVVNKEAFS  154 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~-----------------~~~~~v~~VEid-----------~~vi~~a~~~~~~~~~~~~  154 (251)
                      +-+|+|+||++|..+..+...                 .+.-+|...|+-           |...+.+++..+      .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------~  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------R  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC------C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc------C
Confidence            678999999999877655543                 223467777776           444433322211      1


Q ss_pred             CCCeEEEEcchHHHHhc--CCCceeEEEEcCCCCCCCCcccCCcc------------------H---------------H
Q 025534          155 DPRLELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT------------------K---------------S  199 (251)
Q Consensus       155 ~~rv~~~~~D~~~~l~~--~~~~fD~Ii~D~~~~~~~~p~~~l~~------------------~---------------e  199 (251)
                      ..+--++.+.+..|..+  +.+++|+|+++..-+|-......+..                  .               .
T Consensus       127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            12346777777776643  36899999999987774322222221                  1               2


Q ss_pred             HHHHHHcccCCCCcEEEEecC
Q 025534          200 FYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       200 f~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++. .++.|+|||++++...
T Consensus       207 FL~~-Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          207 FLRI-HSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHH-HHHHEEEEEEEEEEEE
T ss_pred             HHHH-HHHHhccCCeEEEEEe
Confidence            3554 5799999999998764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.64  E-value=5.7e-05  Score=67.41  Aligned_cols=59  Identities=8%  Similarity=0.096  Sum_probs=50.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      ...||+||.|.|.++..|++.....+|++||+|+..+...++.+.       .++++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~-------~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc-------CCCEEEEECCccch
Confidence            468999999999999999985333689999999999998887651       36899999999765

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.60  E-value=0.00025  Score=63.53  Aligned_cols=70  Identities=10%  Similarity=0.062  Sum_probs=54.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||++.|+.+..++++ + .+|++||+.+.--. ..          .+|+|+++.+|++.+.. ...++|+|+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r-g-~~V~aVD~~~l~~~-l~----------~~~~V~~~~~d~~~~~~-~~~~~D~vv  275 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR-N-MWVYSVDNGPMAQS-LM----------DTGQVTWLREDGFKFRP-TRSNISWMV  275 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CEEEEECSSCCCHH-HH----------TTTCEEEECSCTTTCCC-CSSCEEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC-C-CEEEEEEhhhcChh-hc----------cCCCeEEEeCccccccC-CCCCcCEEE
Confidence            45789999999999999999987 3 59999998652211 11          35899999999988743 246899999


Q ss_pred             EcCC
Q 025534          181 GDLA  184 (251)
Q Consensus       181 ~D~~  184 (251)
                      +|..
T Consensus       276 sDm~  279 (375)
T 4auk_A          276 CDMV  279 (375)
T ss_dssp             ECCS
T ss_pred             EcCC
Confidence            9975

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.53  E-value=0.00023  Score=63.19  Aligned_cols=124  Identities=16%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-C-CceeEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVI  179 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~-~~fD~I  179 (251)
                      +.+|+|+.||.|++...+.+..- ...|.++|+|+.+++..+.+++         ...++.+|..++.... . ..+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---------~~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---------ccccccCCHHHccHhHcCcCCcCEE
Confidence            45899999999999998887531 3579999999999999999864         2346778877653211 1 269999


Q ss_pred             EEcCCCCC-C-CCc-------ccCCccHHHHHHHHcccCC--CCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPI-E-GGP-------CYKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~-~-~~p-------~~~l~~~ef~~~~~~~~L~--pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +.++|.+. . .+.       ...| -.++++.  .+.++  |.-+++=|+.  + +.....+..+++.|.+.
T Consensus        73 ~~gpPCq~fS~ag~~~g~~d~r~~l-~~~~~~~--i~~~~~~P~~~~~ENV~--~-l~~~~~~~~i~~~l~~~  139 (343)
T 1g55_A           73 LMSPPCQPFTRIGRQGDMTDSRTNS-FLHILDI--LPRLQKLPKYILLENVK--G-FEVSSTRDLLIQTIENC  139 (343)
T ss_dssp             EECCC------------------CH-HHHHHHH--GGGCSSCCSEEEEEEET--T-GGGSHHHHHHHHHHHHT
T ss_pred             EEcCCCcchhhcCCcCCccCccchH-HHHHHHH--HHHhcCCCCEEEEeCCc--c-ccCHHHHHHHHHHHHHC
Confidence            99998321 1 111       0112 1355554  35677  8866664542  2 22345677888888764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.40  E-value=0.00048  Score=60.84  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hcCC--Cc
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRK--ES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~~--~~  175 (251)
                      ++..++|..+|.|+-+..+++. .+..+|+++|.||++++.++ .+       .++|+++++++..++.   ...+  ++
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-------~~~Rv~lv~~nF~~l~~~L~~~g~~~~  128 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-------DDPRFSIIHGPFSALGEYVAERDLIGK  128 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-------CCTTEEEEESCGGGHHHHHHHTTCTTC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-------cCCcEEEEeCCHHHHHHHHHhcCCCCc
Confidence            4578999999999999999986 34579999999999999995 33       1469999999887653   2222  36


Q ss_pred             eeEEEEcCC
Q 025534          176 YDVIIGDLA  184 (251)
Q Consensus       176 fD~Ii~D~~  184 (251)
                      +|.|+.|+-
T Consensus       129 vDgILfDLG  137 (347)
T 3tka_A          129 IDGILLDLG  137 (347)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEECCc
Confidence            999999984

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.31  E-value=0.00063  Score=58.95  Aligned_cols=46  Identities=11%  Similarity=0.077  Sum_probs=40.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (251)
                      .++..|||++||+|.++..+++..  .+++++|+++.+++.|++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            456789999999999999988863  6899999999999999998753

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.28  E-value=0.00033  Score=62.93  Aligned_cols=118  Identities=11%  Similarity=0.048  Sum_probs=70.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHh--------c-------CCCcEEEEEECChHHHHHHHhchhcccCC-----C---CCCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILR--------H-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----F---SDPR  157 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~--------~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~-----~---~~~r  157 (251)
                      +.+-+|+|+|||+|..+..+..        +       ++.-+|...|+-..-....-+.++.....     .   ...+
T Consensus        51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence            3467899999999987766521        1       13357778887666554443333321100     0   0112


Q ss_pred             eEEEEcchHHHHhc--CCCceeEEEEcCCCCCCCCcccCCc--------------------------------cHHHHHH
Q 025534          158 LELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLY--------------------------------TKSFYEF  203 (251)
Q Consensus       158 v~~~~~D~~~~l~~--~~~~fD~Ii~D~~~~~~~~p~~~l~--------------------------------~~ef~~~  203 (251)
                      -.++.+.+..|-.+  +.+++|+|++...-+|.......+.                                -..|++.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            23566666665433  3689999999998777432222221                                0235665


Q ss_pred             HHcccCCCCcEEEEec
Q 025534          204 VVKPRLNPEGIFVTQA  219 (251)
Q Consensus       204 ~~~~~L~pgG~l~~~~  219 (251)
                       .++.|+|||++++..
T Consensus       211 -ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          211 -RAAEVKRGGAMFLVC  225 (374)
T ss_dssp             -HHHHEEEEEEEEEEE
T ss_pred             -HHHHhCCCCEEEEEE
Confidence             689999999998876

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.16  E-value=0.0026  Score=55.98  Aligned_cols=122  Identities=15%  Similarity=0.131  Sum_probs=82.5

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ..+|+++.||.|++...+.+. +...+.++|+|+..++..+.+++..      .     .+|..++....-..+|+|+.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~------~-----~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------P-----EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------C-----BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC------C-----cCCHHHcCHhhCCCCCEEEEC
Confidence            468999999999999998875 5677899999999999999987521      1     588877654333469999999


Q ss_pred             CCCCC-C-CC-------cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534          183 LADPI-E-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV  241 (251)
Q Consensus       183 ~~~~~-~-~~-------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~  241 (251)
                      +|... + .+       +...| -.++++. + +.++|.-+++=|+  ++...  ....+..+++.|++.
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L-~~~~~r~-i-~~~~P~~~~~ENV--~gl~~~~~~~~~~~i~~~l~~~  143 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTL-FFDIARI-V-REKKPKVVFMENV--KNFASHDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCH-HHHHHHH-H-HHHCCSEEEEEEE--GGGGTGGGGHHHHHHHHHHHHT
T ss_pred             CCCCCcchhcccCCCcchhhHH-HHHHHHH-H-HhccCcEEEEeCc--HHHHhccccHHHHHHHHHHHhC
Confidence            98432 1 11       11112 2456664 3 4679986665554  22121  235677888888764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.16  E-value=0.00043  Score=61.85  Aligned_cols=115  Identities=10%  Similarity=0.043  Sum_probs=76.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc----------------CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH----------------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~----------------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D  164 (251)
                      +.+-+|+|+||++|..+..+...                .+.-+|...|+-......+-+.++...   ...+--++.+.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~~~~~~f~~gv  126 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGV  126 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEE
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---ccCCCEEEEec
Confidence            45578999999999754432221                234578999998888888877765321   11144677777


Q ss_pred             hHHHHhc--CCCceeEEEEcCCCCCCCCcccC--------------------Ccc-------HHHHHHHHcccCCCCcEE
Q 025534          165 ARAELES--RKESYDVIIGDLADPIEGGPCYK--------------------LYT-------KSFYEFVVKPRLNPEGIF  215 (251)
Q Consensus       165 ~~~~l~~--~~~~fD~Ii~D~~~~~~~~p~~~--------------------l~~-------~ef~~~~~~~~L~pgG~l  215 (251)
                      +..|..+  +.+++|+|++...-+|-...+..                    .|.       ..|++. .++.|+|||++
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~-Ra~EL~pGG~m  205 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC-RAQEVVPGGRM  205 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH-HHHHBCTTCEE
T ss_pred             chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCceE
Confidence            7777543  36899999999887774221111                    222       235665 58999999999


Q ss_pred             EEec
Q 025534          216 VTQA  219 (251)
Q Consensus       216 ~~~~  219 (251)
                      ++..
T Consensus       206 vl~~  209 (359)
T 1m6e_X          206 VLTI  209 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.06  E-value=0.0011  Score=59.62  Aligned_cols=122  Identities=17%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-------CCCce
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-------RKESY  176 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-------~~~~f  176 (251)
                      -+|+||.||.|+++..+.+. +...+.+||+|+..++..+.+++         ...++.+|..+....       ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcCHHHHHhhcccCCCe
Confidence            47999999999999988876 45678899999999999988753         456778887764211       23679


Q ss_pred             eEEEEcCCCCCC--CCcc------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534          177 DVIIGDLADPIE--GGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV  241 (251)
Q Consensus       177 D~Ii~D~~~~~~--~~p~------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~  241 (251)
                      |+|+.++|.+..  .+..      ..| -.+|++.  -+.++|.-+++=|+  ++...  ....+..++ .|.+.
T Consensus        73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L-~~~~~~~--v~~~~P~~~v~ENV--~gl~s~~~~~~~~~i~-~l~~~  141 (376)
T 3g7u_A           73 DGIIGGPPCQGFSSIGKGNPDDSRNQL-YMHFYRL--VSELQPLFFLAENV--PGIMQEKYSGIRNKAF-NLVSG  141 (376)
T ss_dssp             CEEEECCCCCTTC-------CHHHHHH-HHHHHHH--HHHHCCSEEEEEEC--TTTTCGGGHHHHHHHH-HHHHT
T ss_pred             eEEEecCCCCCcccccCCCCCCchHHH-HHHHHHH--HHHhCCCEEEEecc--hHhhccCcHHHHHHHH-HHHcC
Confidence            999999984321  1110      111 1345554  35689987766565  22222  234666776 66654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.76  E-value=0.0022  Score=56.26  Aligned_cols=98  Identities=14%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++.-..       .-+.....|..+.+.+..+.+|+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~-------~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAE-------VAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHcCCC-------EEEeCCCcCHHHHHHHhCCCCCEE
Confidence            3568999999875 778888888766 4999999999999999874210       001111134455554433479999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....     .       .+.++. +.+.|+++|+++...
T Consensus       237 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          237 LVTAV-----S-------PKAFSQ-AIGMVRRGGTIALNG  263 (340)
T ss_dssp             EESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEeCC-----C-------HHHHHH-HHHHhccCCEEEEeC
Confidence            86632     1       245666 578999999988653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.76  E-value=0.012  Score=51.80  Aligned_cols=96  Identities=13%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE------cchHHHHhc-C
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~------~D~~~~l~~-~  172 (251)
                      .++.+||++|+|+ |.++..+++..+..+|++++.+++-.+.+++.-.        .  .++.      .|..+-+.. .
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--------~--~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA--------D--LVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--------S--EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--------C--EEEcCcccccchHHHHHHHHh
Confidence            4568999999875 6677788887665589999999999999886411        1  1221      122222322 2


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++.+|+|+-...     .       ...++. ..+.|+++|+++.-.
T Consensus       240 ~~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 GCKPEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLVG  273 (356)
T ss_dssp             TSCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEe
Confidence            357999986532     1       234566 578899999998643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.73  E-value=0.011  Score=52.29  Aligned_cols=98  Identities=14%  Similarity=0.081  Sum_probs=66.0

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-----EcchHHHHhc-C-
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-----INDARAELES-R-  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-----~~D~~~~l~~-~-  172 (251)
                      .++.+||++|+|+ |.++.++++..+...|++++.+++-.+.+++. ..       .-+...     ..|..+.+.+ + 
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-------~~~~~~~~~~~~~~~~~~v~~~t~  249 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-------EVVTHKVERLSAEESAKKIVESFG  249 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-------TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-------hcccccccccchHHHHHHHHHHhC
Confidence            4568999999865 56777888876655599999999999999986 21       112222     1333444433 2 


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +..+|+|+-...     .       ...++. +.+.|+++|+++.-.
T Consensus       250 g~g~Dvvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          250 GIEPAVALECTG-----V-------ESSIAA-AIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SCCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECC
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEc
Confidence            457999986432     1       235666 578999999998654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.72  E-value=0.003  Score=56.10  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      .+..+||++|+|+ |.++..+++..+..+|++++.+++-.+.+++.-. .      .-+.....|..+-+.+ .++.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~------~vi~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-T------HVINSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-S------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-C------EEecCCccCHHHHHHHhcCCCCcE
Confidence            3568999999876 6677788876565579999999999999986411 0      0001001233333432 3347999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+-...     .       .+.++. ..+.|+++|+++.-.
T Consensus       262 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          262 ALESTG-----S-------PEILKQ-GVDALGILGKIAVVG  289 (371)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEeC
Confidence            985432     1       245666 578999999988643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.68  E-value=0.014  Score=49.56  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-------CCCcEEEEEE-----CChH----------------------HHH-HH--H
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCD-----IDEE----------------------VVE-FC--K  143 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VE-----id~~----------------------vi~-~a--~  143 (251)
                      .-|..|+++|+-.|..+..++..       ....+|.+.|     ..+.                      .++ ..  +
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45789999999999987765431       2346899998     2210                      011 11  1


Q ss_pred             hchhcccCCCCCCCeEEEEcchHHHHhc-----CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          144 SYLVVNKEAFSDPRLELVINDARAELES-----RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       144 ~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++...+  ...++++++.|++.+.+..     ...++|+|.+|.- .       .--+...++. +..+|+|||++++.
T Consensus       148 ~~~~~~g--~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-~-------Y~~t~~~le~-~~p~l~~GGvIv~D  216 (257)
T 3tos_A          148 ECSDFFG--HVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-L-------YEPTKAVLEA-IRPYLTKGSIVAFD  216 (257)
T ss_dssp             HTTSTTT--TSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-C-------HHHHHHHHHH-HGGGEEEEEEEEES
T ss_pred             hhhhhcC--CCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-c-------cchHHHHHHH-HHHHhCCCcEEEEc
Confidence            1111111  1247999999999998754     2357999999962 1       1125677888 68999999999985


Q ss_pred             c
Q 025534          219 A  219 (251)
Q Consensus       219 ~  219 (251)
                      -
T Consensus       217 D  217 (257)
T 3tos_A          217 E  217 (257)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.65  E-value=0.019  Score=53.21  Aligned_cols=127  Identities=16%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh------------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------------  170 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~------------  170 (251)
                      .-+|++|.||.|++...+.+. +...|.++|+|+..++..+.++..      .|...++.+|..++..            
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC------DPATHHFNEDIRDITLSHQEGVSDEAAA  160 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc------CCCcceeccchhhhhhccccccchhhHH
Confidence            357999999999999988775 455689999999999998888742      3556778899988752            


Q ss_pred             ----cCCCceeEEEEcCCCCC-C-CC----------------cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--
Q 025534          171 ----SRKESYDVIIGDLADPI-E-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--  226 (251)
Q Consensus       171 ----~~~~~fD~Ii~D~~~~~-~-~~----------------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--  226 (251)
                          .....+|+|+..+|.+. + .+                +...| -.++++. + +.++|.-+++=|+  ++...  
T Consensus       161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~L-f~e~~ri-I-~~~rPk~fvlENV--~gl~s~~  235 (482)
T 3me5_A          161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTL-FFDVVRI-I-DARRPAMFVLENV--KNLKSHD  235 (482)
T ss_dssp             HHHHHHSCCCSEEEEECCCCCC------------------CTTTTSH-HHHHHHH-H-HHHCCSEEEEEEE--TTTTTGG
T ss_pred             hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccH-HHHHHHH-H-HHcCCcEEEEeCc--HHHhccc
Confidence                11246899999887432 1 11                10112 2455554 3 4678976666555  22222  


Q ss_pred             ChHHHHHHHHHHHhh
Q 025534          227 HTEVFSCIYNTLRQV  241 (251)
Q Consensus       227 ~~~~~~~i~~~l~~~  241 (251)
                      ....+..+++.|.+.
T Consensus       236 ~g~~f~~i~~~L~~l  250 (482)
T 3me5_A          236 KGKTFRIIMQTLDEL  250 (482)
T ss_dssp             GGHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHhcC
Confidence            235778888888764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.58  E-value=0.0044  Score=52.48  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~  148 (251)
                      .++..|||..||+|+++..+.+..  .+++++|+++..++.+++++..
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            566789999999999999988863  6999999999999999998764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.50  E-value=0.0038  Score=54.97  Aligned_cols=98  Identities=9%  Similarity=0.080  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .++.+||++|+|+ |.++..+++..+..+|++++.+++-.+.+++.-. .      .-+.....|..+.+.+ + +..+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-~------~vi~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA-T------DIINYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC-C------EEECGGGSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-c------eEEcCCCcCHHHHHHHHcCCCCCC
Confidence            4568999999875 5667788887665589999999999999987521 0      0011111344444433 2 34799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+-...     .+       +.++. ..+.|+++|+++.-
T Consensus       238 ~v~d~~g-----~~-------~~~~~-~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          238 KVVIAGG-----DV-------HTFAQ-AVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEEECSS-----CT-------THHHH-HHHHEEEEEEEEEC
T ss_pred             EEEECCC-----Ch-------HHHHH-HHHHHhcCCEEEEe
Confidence            9985432     11       23555 57789999998854

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.50  E-value=0.0052  Score=54.65  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=66.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc----CCCc
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~  175 (251)
                      .++.+||++|+|+ |.++..+++..+..+|++++.+++-.+++++. +..      .-+.....|..+.+.+    +++.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GAT------ATVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCS------EEECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCC------EEECCCCcCHHHHHHhhhhccCCC
Confidence            4578999999865 56677888876655899999999999999874 211      0011112355555543    2348


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+|+-...     .       .+.++. +.+.|+++|++++-.
T Consensus       254 ~Dvvid~~G-----~-------~~~~~~-~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          254 VDVVIECAG-----V-------AETVKQ-STRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             CCEEEECCC-----C-------HHHHHH-HHHHhccCCEEEEEe
Confidence            999985431     1       245666 578899999998754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.42  E-value=0.021  Score=50.29  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             CeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEEE
Q 025534          104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii  180 (251)
                      -+|+++.||.|++...+.+.. +...|.++|+|+...+..+.+++         ...++.+|..+....  ....+|+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---------~~~~~~~DI~~~~~~~~~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---------ETNLLNRNIQQLTPQVIKKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---------CCceeccccccCCHHHhccCCCCEEE
Confidence            479999999999998887652 12568899999999999998875         234567777654321  113699999


Q ss_pred             EcCCCCCC---------CCcccCCccHHHHHHHHcccCC-CCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          181 GDLADPIE---------GGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       181 ~D~~~~~~---------~~p~~~l~~~ef~~~~~~~~L~-pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ..+|....         ..+...|+ .++++. + +.++ |.-+++=|+  ++ +.....+..+.+.|++.
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~-~~~~r~-i-~~~~~P~~~vlENV--~g-l~~~~~~~~i~~~l~~~  139 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSF-LYLIGI-L-DQLDNVDYILMENV--KG-FENSTVRNLFIDKLKEC  139 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCH-HHHHHH-G-GGCTTCCEEEEEEC--TT-GGGSHHHHHHHHHHHHT
T ss_pred             ecCCCcchhhhhhccCCcCcccccH-HHHHHH-H-HHhcCCCEEEEecc--hh-hhhhhHHHHHHHHHHhC
Confidence            98874311         11112232 456664 3 5565 876666555  32 23344567777777764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.29  E-value=0.0038  Score=52.90  Aligned_cols=62  Identities=11%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCC--------ccHHHHHHHHcccCCCCcEEEEec
Q 025534          157 RLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       157 rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..+++++|+.++++.. +++||+|++|||...........        +..+.++. ++++|+|+|.++++.
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~-~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHH-HHHHhcCCeEEEEEc
Confidence            4578999999998764 46899999999853310000011        23466777 689999999998874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.29  E-value=0.02  Score=50.85  Aligned_cols=99  Identities=16%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE--EcchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~--~~D~~~~l~~-~~~~f  176 (251)
                      .++.+||++|+|+ |.++..+++..+..+|+++|.+++-++.+++.-. .      .-+...  ..|..+.+++ +++.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-~------~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-N------EFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-C------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c------EEEccccCchhHHHHHHHhcCCCC
Confidence            3568999999864 5667777776665589999999999999987411 0      000000  1344444433 34589


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+|+-...     .       .+.++. ..+.|+++ |++++-.
T Consensus       265 D~vid~~g-----~-------~~~~~~-~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          265 DYSFECIG-----N-------VSVMRA-ALECCHKGWGTSVIVG  295 (378)
T ss_dssp             SEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             CEEEECCC-----C-------HHHHHH-HHHHhhccCCEEEEEc
Confidence            99985432     1       245666 57899997 9988643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.27  E-value=0.028  Score=49.91  Aligned_cols=94  Identities=20%  Similarity=0.258  Sum_probs=60.8

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++. ...         .++..+-.+++....+.+|+|
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL-GAD---------EVVNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TCS---------EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc---------EEeccccHHHHHHhhcCCCEE
Confidence            4568999999875 666777887765 4799999999999988863 211         122111123343333579999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +-....     +       ..++. ..+.|+++|.++.-
T Consensus       262 id~~g~-----~-------~~~~~-~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          262 LNTVAA-----P-------HNLDD-FTTLLKRDGTMTLV  287 (369)
T ss_dssp             EECCSS-----C-------CCHHH-HHTTEEEEEEEEEC
T ss_pred             EECCCC-----H-------HHHHH-HHHHhccCCEEEEe
Confidence            865431     1       11345 46889999998754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.27  E-value=0.01  Score=52.07  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .++.+||++|+|+ |.++.++++..+..+|+++|.+++-.+.+++.-.       + .+--...|..+.+.+ + +..+|
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-------~-~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-------D-AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-------S-EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------C-EEEcCCCcHHHHHHHHhCCCCCe
Confidence            4568999999865 6667777776445799999999999999987521       0 110011233343332 2 34799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-...     .       .+.++. ..+.|+++|+++.-.
T Consensus       242 ~v~d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          242 AVFDFVG-----A-------QSTIDT-AQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEC
Confidence            9986532     1       245666 578999999988643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.24  E-value=0.016  Score=50.49  Aligned_cols=121  Identities=14%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +|++|-||.|++..-+.+. +..-+.++|+|+..++..+.+++          -+++.+|..+.-...-.+.|+|+.-+|
T Consensus         2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCCHhhCCcccEEEecCC
Confidence            7999999999998887764 55678899999999999888764          256788987753333357999998887


Q ss_pred             CCC-C-C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--CChHHHHHHHHHHHhh
Q 025534          185 DPI-E-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV  241 (251)
Q Consensus       185 ~~~-~-~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~~~~~~~~i~~~l~~~  241 (251)
                      .+. + .       ++...| -.++++.  -+.++|.-+++=|+  ++..  ...+.+..+++.|.+.
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L-~~~~~r~--i~~~~Pk~~~~ENV--~gl~~~~~~~~~~~i~~~l~~~  133 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKL-FYEYIRI--LKQKKPIFFLAENV--KGMMAQRHNKAVQEFIQEFDNA  133 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHH-HHHHHHH--HHHHCCSEEEEEEC--CGGGGCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCccCCCCchhHH-HHHHHHH--HhccCCeEEEeeee--cccccccccchhhhhhhhhccC
Confidence            321 1 0       111112 2455554  35689986665454  2222  2346778888888765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.17  E-value=0.0052  Score=53.87  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcc-cC-------CccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPC-YK-------LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       154 ~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~-~~-------l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ...+.+++++|+++.++.. +++||+|++|||......-. ..       -+..+.++. ++++|+|||.++++.+.
T Consensus        11 ~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~-~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           11 TTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             ECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             ecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHH-HHHHCcCCcEEEEEECC
Confidence            3467899999999988753 57899999999853210000 00       023467777 68999999999998653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.16  E-value=0.032  Score=49.38  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-E----cchHHHHhc-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-I----NDARAELES-RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~----~D~~~~l~~-~~  173 (251)
                      .+..+||++|+|+ |.++..+++..+..+|++++.+++-.+.+++. ...         .++ .    .|..+.+.. ..
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GAT---------DFVNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCC---------EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCc---------eEEeccccchhHHHHHHHHhC
Confidence            3468999999764 55677777776655899999999999998864 110         111 1    233333432 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      +.+|+|+-...     .       .+.++. ..+.|+++ |.++.-.
T Consensus       261 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          261 GGVDFSLECVG-----N-------VGVMRN-ALESCLKGWGVSVLVG  294 (374)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEEc
Confidence            47999985432     1       244566 57899999 9988643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.14  E-value=0.0098  Score=53.32  Aligned_cols=110  Identities=14%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~~-~-~~~f  176 (251)
                      .++.+||++|+|+ |.++..+++..+..+|++++.+++-.+.+++. ...       -+.....|. .+.++. + ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~-------~i~~~~~~~~~~~~~~~~~g~g~  255 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-GFE-------TIDLRNSAPLRDQIDQILGKPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-TCE-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCc-------EEcCCCcchHHHHHHHHhCCCCC
Confidence            3568999999876 67788888865645899999999999998864 110       011111232 333332 2 2379


Q ss_pred             eEEEEcCCCCCCCC-c-ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGG-P-CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~-p-~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+||-....+.... + ..++...+.++. +.+.|+++|++++-.
T Consensus       256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEANTETPNGALNS-LFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTTSBCTTHHHHH-HHHHEEEEEEEECCS
T ss_pred             CEEEECCCCccccccccccccccHHHHHH-HHHHHhcCCEEEEec
Confidence            99986543211000 0 000111235666 578899999987543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.12  E-value=0.03  Score=49.58  Aligned_cols=96  Identities=9%  Similarity=-0.016  Sum_probs=62.7

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-----cchHHHHhc-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-----~D~~~~l~~-~~  173 (251)
                      .+..+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ...         .++.     .|..+.+.+ ++
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GAT---------ECLNPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc---------EEEecccccchHHHHHHHHhC
Confidence            3468999999764 55667777765545899999999999998864 110         1111     234444432 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      +.+|+|+-...     .       .+.++. ..+.|+++ |+++.-.
T Consensus       260 gg~Dvvid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          260 GGVDYAVECAG-----R-------IETMMN-ALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             CCCCEEEECCC-----C-------HHHHHH-HHHHHhcCCCEEEEEc
Confidence            47999985432     1       245566 57899999 9988643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.11  E-value=0.043  Score=48.97  Aligned_cols=109  Identities=12%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc-hHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~l~~-~-~~~f  176 (251)
                      .++.+||++|+|+ |.++.++++..+..+|+++|.+++-++.+++. ..       .-+.....| ..+.+.. + ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-------~~i~~~~~~~~~~~v~~~t~g~g~  255 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF-------EIADLSLDTPLHEQIAALLGEPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC-------EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CC-------cEEccCCcchHHHHHHHHhCCCCC
Confidence            3568999999865 66778888876655899999999999999874 11       001000112 3333332 2 3479


Q ss_pred             eEEEEcCCCCCCCCc----ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGP----CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p----~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-....+.. ..    .......+.++. ..+.|+++|.+++-.
T Consensus       256 Dvvid~~G~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          256 DCAVDAVGFEAR-GHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEECCCTTCB-CSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEECS
T ss_pred             CEEEECCCCccc-ccccccccccchHHHHHH-HHHHHhcCCEEEEec
Confidence            999865432110 00    001112245666 578999999987643

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.09  E-value=0.0076  Score=52.02  Aligned_cols=66  Identities=23%  Similarity=0.148  Sum_probs=43.7

Q ss_pred             CCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCC---cccCC--------c---cHHHHHHHHcccCCCCcEEEEe
Q 025534          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIEGG---PCYKL--------Y---TKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       154 ~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~---p~~~l--------~---~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ...+++++++|++++++.. +++||+|++|||......   ....+        +   -.+++++ +.++|+|||.++++
T Consensus        18 ~~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~-~~rvLk~~G~l~i~   96 (297)
T 2zig_A           18 SFGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWRE-VFRLLVPGGRLVIV   96 (297)
T ss_dssp             ---CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHH-HHHHcCCCcEEEEE
Confidence            4467899999999988653 478999999998532100   00000        0   1245667 68999999999988


Q ss_pred             cC
Q 025534          219 AG  220 (251)
Q Consensus       219 ~~  220 (251)
                      .+
T Consensus        97 ~~   98 (297)
T 2zig_A           97 VG   98 (297)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.09  E-value=0.034  Score=49.21  Aligned_cols=95  Identities=12%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-----cchHHHHhc-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-----~D~~~~l~~-~~  173 (251)
                      .+..+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-. .         .++.     .|..+.+.+ +.
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~---------~vi~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-T---------DCLNPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-S---------EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-c---------EEEccccccchHHHHHHHHhC
Confidence            3468999999764 5567777777665589999999999998886411 0         1111     233444432 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEe
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ  218 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~  218 (251)
                      +.+|+|+-...     .       .+.++. ..+.|+++ |++++-
T Consensus       264 ~g~Dvvid~~G-----~-------~~~~~~-~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          264 GGVDYSLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCBSEEEESSC-----C-------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred             CCccEEEECCC-----C-------HHHHHH-HHHHhhcCCCEEEEE
Confidence            47999985432     1       245666 57899999 998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.06  E-value=0.033  Score=48.88  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=61.8

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-C----C
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-R----K  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~----~  173 (251)
                      .++.+||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++.-.       +.-+.... .|..+-+.. .    .
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGA-------DVTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-------SEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhCC-------CEEEcCcccccHHHHHHHHhccccC
Confidence            4568999999865 556777777666 469999999999999886421       00011100 233333322 2    3


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.+|+|+....     .       ...++. ..+.|+++|.++.-.
T Consensus       239 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          239 DLPNVTIDCSG-----N-------EKCITI-GINITRTGGTLMLVG  271 (352)
T ss_dssp             SCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECS
T ss_pred             CCCCEEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            57999986532     1       134566 578899999988643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.98  E-value=0.047  Score=48.26  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-----cchHHHHhc-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-----~D~~~~l~~-~~  173 (251)
                      .+..+||++|+|+ |..+..+++..+..+|++++.+++-.+.+++. ...         .++.     .|..+.+.+ .+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GAT---------ECVNPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc---------eEecccccchhHHHHHHHHhC
Confidence            3568999999765 55677777776655899999999999988864 110         1111     233444432 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      +.+|+|+-...     .       .+.++. ..+.|+++ |.++.-.
T Consensus       260 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          260 GGVDFSFEVIG-----R-------LDTMVT-ALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHHBCTTTCEEEECS
T ss_pred             CCCcEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEec
Confidence            47999985532     1       244566 57889999 9988643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.95  E-value=0.04  Score=41.75  Aligned_cols=94  Identities=13%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~fD  177 (251)
                      ..+|+++|+|.=+  ++..|.+. + .+|+++|.|++.++.+++.           .+.++.+|+.+  .+... -+..|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g-~~v~vid~~~~~~~~~~~~-----------g~~~i~gd~~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-D-IPLVVIETSRTRVDELRER-----------GVRAVLGNAANEEIMQLAHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHT-----------TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHc-----------CCCEEECCCCCHHHHHhcCcccCC
Confidence            3689999997532  34444443 3 5899999999998877752           45678888753  34332 26799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++..++..        .......  ..+.+.|+..++...
T Consensus        74 ~vi~~~~~~~--------~n~~~~~--~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           74 WLILTIPNGY--------EAGEIVA--SARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEECCSCHH--------HHHHHHH--HHHHHCSSSEEEEEE
T ss_pred             EEEEECCChH--------HHHHHHH--HHHHHCCCCeEEEEE
Confidence            9998765321        0111222  245677888777654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.93  E-value=0.043  Score=48.47  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-----cchHHHHhc-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-----~D~~~~l~~-~~  173 (251)
                      .++.+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. ...         .++.     .|..+.+.+ ..
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GAT---------ECINPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc---------eEeccccccccHHHHHHHHhC
Confidence            3468999999764 55667777765545899999999999988864 210         1111     233444432 23


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      +.+|+|+-...     .       .+.++. +.+.|+++ |.++.-.
T Consensus       259 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          259 GGVDYSFECIG-----N-------VKVMRA-ALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECCC-----c-------HHHHHH-HHHhhccCCcEEEEEe
Confidence            47999985432     1       244566 57899999 9988643

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.92  E-value=0.038  Score=48.22  Aligned_cols=99  Identities=17%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .++.+||++|+|+++ ++..+++.....+|++++.+++-.+++++.-..       .-+.....|..+.+.+ + +..+|
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-------~~i~~~~~~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-------VTINSGDVNPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-------EEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-------EEEeCCCCCHHHHhhhhcCCCCce
Confidence            456899999998754 455556544457999999999988888875321       1122223455555543 2 34688


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .++.+..     .       .+.+.. ..+.|+++|.+++..
T Consensus       235 ~~~~~~~-----~-------~~~~~~-~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          235 SAIVCAV-----A-------RIAFEQ-AVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEECCS-----C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred             EEEEecc-----C-------cchhhe-eheeecCCceEEEEe
Confidence            8887643     1       244555 578899999987644

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.88  E-value=0.049  Score=48.04  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhc--CCC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES--RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~--~~~  174 (251)
                      .++.+||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++. +..         .++.   .|..+.+..  .+.
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFAL-GAD---------HGINRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHc-CCC---------EEEcCCcccHHHHHHHHhCCC
Confidence            3568999999765 556777777766 4899999999999998874 210         1111   233444432  234


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+|+|+-...     ..        .++. ..+.|+++|.++.-.
T Consensus       257 g~D~vid~~g-----~~--------~~~~-~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          257 GADHILEIAG-----GA--------GLGQ-SLKAVAPDGRISVIG  287 (363)
T ss_dssp             CEEEEEEETT-----SS--------CHHH-HHHHEEEEEEEEEEC
T ss_pred             CceEEEECCC-----hH--------HHHH-HHHHhhcCCEEEEEe
Confidence            7999986542     11        1344 467899999988654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.85  E-value=0.021  Score=50.25  Aligned_cols=125  Identities=15%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC-CCcEE-EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK-TVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v-~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      .+-+|+++.||.|++...+.+.. +...+ .++|+|+..++..+.+++..          ++.+|..+.-..  ....+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCCCC
Confidence            45689999999999998887752 12456 79999999999999987521          344555443211  112699


Q ss_pred             EEEEcCCCCCC----CCcccCCc------cHHHHH-HHHcccC--CCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          178 VIIGDLADPIE----GGPCYKLY------TKSFYE-FVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       178 ~Ii~D~~~~~~----~~p~~~l~------~~ef~~-~~~~~~L--~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +|+..+|....    .+....+.      -.++++ .  -+.+  +|.-+++=|+  ++ +.....+..+++.|.+.
T Consensus        79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~--i~~~~~~P~~~~lENV--~g-l~~~~~~~~i~~~l~~~  150 (327)
T 3qv2_A           79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDI--LPYLINKPKHIFIENV--PL-FKESLVFKEIYNILIKN  150 (327)
T ss_dssp             EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTT--GGGCSSCCSEEEEEEC--GG-GGGSHHHHHHHHHHHHT
T ss_pred             EEEecCCccCcccccCCCCCCCccccchhHHHHHHHH--HHHhccCCCEEEEEch--hh-hcChHHHHHHHHHHHhC
Confidence            99998874321    01100011      123444 2  2345  6776555454  22 23345677788888764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.79  E-value=0.023  Score=49.77  Aligned_cols=90  Identities=19%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++. +.         -.++ .|. +.+   .+.+|+|
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga---------~~v~-~~~-~~~---~~~~D~v  238 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM-GV---------KHFY-TDP-KQC---KEELDFI  238 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT-TC---------SEEE-SSG-GGC---CSCEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc-CC---------Ceec-CCH-HHH---hcCCCEE
Confidence            4578999999875 667778888766 4899999999999988873 21         1222 342 222   2379999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-....+            +.++. ..+.|+++|+++.-.
T Consensus       239 id~~g~~------------~~~~~-~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPTH------------YDLKD-YLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCSC------------CCHHH-HHTTEEEEEEEEECC
T ss_pred             EECCCcH------------HHHHH-HHHHHhcCCEEEEEC
Confidence            8543321            12445 578999999998654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.71  E-value=0.06  Score=47.84  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE------cchHHHHhc-C
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~------~D~~~~l~~-~  172 (251)
                      .++.+||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ..         -.++.      .|..+.+++ .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga---------~~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA---------DLTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC---------SEEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CC---------cEEEeccccCcchHHHHHHHHh
Confidence            3468999999653 45667777766545999999999999998864 11         01221      233333332 2


Q ss_pred             -CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 -~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +..+|+|+-....     +       +.++. ..+.|+++|+++.-.
T Consensus       264 ~g~g~Dvvid~~g~-----~-------~~~~~-~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATGD-----S-------RALLE-GSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence             2479999865421     1       23455 467899999987643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.70  E-value=0.014  Score=51.43  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             CeEEEEecCc-hHHH-HHHH-hcCCCcEEEEEECChH---HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          104 KTIFIMGGGE-GSTA-REIL-RHKTVEKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       104 ~~VL~iG~G~-G~~~-~~l~-~~~~~~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      .+||++|+|+ |.++ .+++ +..+..+|++++.+++   -.+.+++. ...       .+.....|..+ +.+..+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga~-------~v~~~~~~~~~-i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-DAT-------YVDSRQTPVED-VPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-TCE-------EEETTTSCGGG-HHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-CCc-------ccCCCccCHHH-HHHhCCCCC
Confidence            8999999743 5566 7778 7666545999999988   78888764 211       01000123333 322123799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-...     .       .+.++. +.+.|+++|+++.-.
T Consensus       245 vvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          245 FIYEATG-----F-------PKHAIQ-SVQALAPNGVGALLG  273 (357)
T ss_dssp             EEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC-----C-------hHHHHH-HHHHHhcCCEEEEEe
Confidence            9985432     1       134566 578899999988643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.62  E-value=0.065  Score=46.63  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      .++.+||+.|+|+.+ ++..+++..+...+++++.+++-.+++++.=.       +.-+.....|..+.++.  ....+|
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~~~~~~~~~~~~~~~~~~g~d  231 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFNSSEMSAPQMQSVLRELRFNQ  231 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEeCCCCCHHHHHHhhcccCCcc
Confidence            456899999987644 56677777666788999999999999987521       01111111333343332  235678


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-..-     .       .+.++. ..+.|+++|.+++..
T Consensus       232 ~v~d~~G-----~-------~~~~~~-~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          232 LILETAG-----V-------PQTVEL-AVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEECSC-----S-------HHHHHH-HHHHCCTTCEEEECC
T ss_pred             ccccccc-----c-------cchhhh-hhheecCCeEEEEEe
Confidence            8775431     1       245666 578899999988654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.59  E-value=0.012  Score=51.61  Aligned_cols=65  Identities=18%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             CCeEEE-EcchHHHHhcC-CCceeEEEEcCCCCCCCC----ccc-CCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          156 PRLELV-INDARAELESR-KESYDVIIGDLADPIEGG----PCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       156 ~rv~~~-~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~----p~~-~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ...+++ ++|++++++.. ++++|+|++|||.....+    ... .-+..+.+.. ++++|+|||.++++...
T Consensus        37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~-~~rvLk~~G~i~i~~~~  108 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGGL  108 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEECS
T ss_pred             ccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHH-HHHHcCCCeEEEEEcCc
Confidence            457888 99999998764 468999999998533100    000 0023466777 68999999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.04  Score=48.13  Aligned_cols=94  Identities=11%  Similarity=0.048  Sum_probs=60.4

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcC--CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHhc--CCCc
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES--RKES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~~--~~~~  175 (251)
                      ++.+||++|+|+ |.++.++++..  + .+|++++.+++-.+.+++. ..         -.++..+- .+++..  .+..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~l-Ga---------~~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALEL-GA---------DYVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHH-TC---------SEEECHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHh-CC---------CEEeccccchHHHHHhhcCCC
Confidence            568999999864 55667777765  5 5799999999999988873 21         01221111 122221  1347


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+|+-...     .       .+.++. ..+.|+++|.++.-.
T Consensus       239 ~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          239 ASIAIDLVG-----T-------EETTYN-LGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEEESSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             ccEEEECCC-----C-------hHHHHH-HHHHhhcCCEEEEeC
Confidence            999986532     1       234566 578899999988643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.56  E-value=0.019  Score=45.87  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .++++||+.|+  |.|..+..+++..+ .+|++++.+++..+.+++. ..      +..+.....|..+.+.+ . ...+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV------EYVGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC------SEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEeeCCcHHHHHHHHHHhCCCCC
Confidence            35688999995  33445555555444 5899999999988877653 10      00011111233333322 2 2469


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+...      ++       +.++. +.+.|+++|+++.-.
T Consensus       109 D~vi~~~------g~-------~~~~~-~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          109 DVVLNSL------AG-------EAIQR-GVQILAPGGRFIELG  137 (198)
T ss_dssp             EEEEECC------CT-------HHHHH-HHHTEEEEEEEEECS
T ss_pred             eEEEECC------ch-------HHHHH-HHHHhccCCEEEEEc
Confidence            9999653      11       34566 578899999988643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.56  E-value=0.023  Score=51.04  Aligned_cols=101  Identities=16%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .++.+||++|+|+ |.++.++++..+..+|++++.+++-.+++++.-...       -+.....|..+.+.+ + +..+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~-------vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH-------VIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE-------EECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE-------EEcCCCCCHHHHHHHHhCCCCCC
Confidence            3468999999864 556777777766559999999999999998752100       000001344444433 2 34799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHH---HHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEF---VVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~---~~~~~L~pgG~l~~~~  219 (251)
                      +|+-...     .+      ...+..   ++.+.++++|++++-.
T Consensus       285 ~vid~~g-----~~------~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          285 LFLEATG-----VP------QLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             EEEECSS-----CH------HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             EEEECCC-----Cc------HHHHHHHHHHHHhccCCCcEEEEeC
Confidence            9985432     11      013333   1234449999998643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.49  E-value=0.027  Score=48.98  Aligned_cols=97  Identities=24%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+.+.+...      .-+.....|..+.+.+ ..+.+|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKCRFLVEELGFD------GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCCS------EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCC------EEEECCCHHHHHHHHHhcCCCce
Confidence            45689999998  34556677777666 49999999999888883333211      0011111344444432 345799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+....      .       +.++. ..+.|+++|.++.-
T Consensus       221 ~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVG------G-------EILDT-VLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSC------H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred             EEEECCC------c-------chHHH-HHHHHhhCCEEEEE
Confidence            9986532      1       34566 57899999998864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.43  E-value=0.18  Score=43.77  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             CCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcCCCceeEE
Q 025534          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDVI  179 (251)
Q Consensus       103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~~~~fD~I  179 (251)
                      ..+|.+||+|.  +.++..+.+.....+|+++|.+++.++.+++. +.         +.-...|..+ .+    ...|+|
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~---------~~~~~~~~~~~~~----~~aDvV   98 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI---------IDEGTTSIAKVED----FSPDFV   98 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS---------CSEEESCTTGGGG----GCCSEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CC---------cchhcCCHHHHhh----ccCCEE
Confidence            47899999985  33555665543223899999999988877653 10         1112234333 22    358999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |+..+..         ...+.++. +...|+++.+++-
T Consensus        99 ilavp~~---------~~~~vl~~-l~~~l~~~~iv~d  126 (314)
T 3ggo_A           99 MLSSPVR---------TFREIAKK-LSYILSEDATVTD  126 (314)
T ss_dssp             EECSCGG---------GHHHHHHH-HHHHSCTTCEEEE
T ss_pred             EEeCCHH---------HHHHHHHH-HhhccCCCcEEEE
Confidence            9986521         13567788 6888998876654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.37  E-value=0.053  Score=47.74  Aligned_cols=94  Identities=15%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-HHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-~~l~~~~~~fD~  178 (251)
                      .++.+||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++. ...         .++..+-. ++.....+.+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~v~~~~~~~~~~~~~~~~~D~  246 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKM-GAD---------HYIATLEEGDWGEKYFDTFDL  246 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TCS---------EEEEGGGTSCHHHHSCSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCC---------EEEcCcCchHHHHHhhcCCCE
Confidence            3568999999854 556677777655 4799999999988888873 210         12211101 222222257999


Q ss_pred             EEEcCCC--CCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLAD--PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~--~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+.....  +.            .++. +.+.|+++|+++.-
T Consensus       247 vid~~g~~~~~------------~~~~-~~~~l~~~G~iv~~  275 (360)
T 1piw_A          247 IVVCASSLTDI------------DFNI-MPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEECCSCSTTC------------CTTT-GGGGEEEEEEEEEC
T ss_pred             EEECCCCCcHH------------HHHH-HHHHhcCCCEEEEe
Confidence            9865432  11            1223 46789999988754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.31  E-value=0.024  Score=49.53  Aligned_cols=98  Identities=17%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+....+|+|
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~------~~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKEL-GAD------LVVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TCS------EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHC-CCC------EEecCCCccHHHHHHHHhCCCCEE
Confidence            4568999999853 566777777666 4999999999999988763 210      000000123333332211479999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +....     .       .+.++. ..+.|+++|.++.-.
T Consensus       235 id~~g-----~-------~~~~~~-~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          235 VVTAV-----S-------KPAFQS-AYNSIRRGGACVLVG  261 (339)
T ss_dssp             EESSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EECCC-----C-------HHHHHH-HHHHhhcCCEEEEec
Confidence            86542     1       134566 567899999887543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.29  E-value=0.02  Score=50.14  Aligned_cols=98  Identities=15%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCceeE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD~  178 (251)
                      ++.+||++|+|+ |..+..+++..+..+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ + ...+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga~------~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GAD------YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TCS------EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            568999999854 55667777766644899999999999988864 210      0000001244444432 2 347999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+....     .       .+.++. +.+.|+++|+++.-.
T Consensus       240 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          240 FLEFSG-----A-------PKALEQ-GLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEc
Confidence            986532     1       244566 578899999987643

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.26  E-value=0.026  Score=48.87  Aligned_cols=74  Identities=11%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcE--EEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~--v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~f  176 (251)
                      .+-+|+++-||.|++...+.+. +...  |.++|+|+..++..+.+++         ...++.+|..++....   ...+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQEWGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHHTCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcccCCc
Confidence            4568999999999999888775 4333  6899999999998887753         3467788887653221   1469


Q ss_pred             eEEEEcCCC
Q 025534          177 DVIIGDLAD  185 (251)
Q Consensus       177 D~Ii~D~~~  185 (251)
                      |+|+..+|.
T Consensus        85 Dll~ggpPC   93 (295)
T 2qrv_A           85 DLVIGGSPC   93 (295)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecCCC
Confidence            999999873

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.11  E-value=0.014  Score=51.12  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      ++.+||++|+|+ |..+..+++..+..+|++++.+++-.+.+++. ...  .. +.+    ..|..+.+.+ +...+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~--v~-~~~----~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR--LV-NPL----EEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE--EE-CTT----TSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh--cc-CcC----ccCHHHHHHHhcCCCCCEE
Confidence            568999999854 55667777766544899999999888877764 210  00 000    1233333322 24579999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +....     .       .+.++. ..+.|+++|+++.-
T Consensus       236 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          236 LEFSG-----N-------EAAIHQ-GLMALIPGGEARIL  261 (343)
T ss_dssp             EECSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            86532     1       234566 57789999988764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.08  E-value=0.077  Score=46.64  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++.+...       .+ +...| .+.+.+..+.+|+|+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~lGa~-------~v-i~~~~-~~~~~~~~~g~D~vi  249 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGAD-------DY-VIGSD-QAKMSELADSLDYVI  249 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTTSCCS-------CE-EETTC-HHHHHHSTTTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHcCCc-------ee-ecccc-HHHHHHhcCCCCEEE
Confidence            568999999753 345566676655 48999999998888887444311       11 11122 233433335799998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -....+.            .++. ..+.|+++|+++.-.
T Consensus       250 d~~g~~~------------~~~~-~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          250 DTVPVHH------------ALEP-YLSLLKLDGKLILMG  275 (357)
T ss_dssp             ECCCSCC------------CSHH-HHTTEEEEEEEEECS
T ss_pred             ECCCChH------------HHHH-HHHHhccCCEEEEeC
Confidence            6543211            1234 467899999988643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.96  E-value=0.065  Score=47.31  Aligned_cols=96  Identities=23%  Similarity=0.281  Sum_probs=61.2

Q ss_pred             CCCeEEEEe-c-CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          102 NPKTIFIMG-G-GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG-~-G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      ++.+||++| + |.|.++..+++.....+|++++.+++-.+.+++. +... .. +.     ..|..+.+.+ ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~-vi-~~-----~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHH-VI-DH-----SKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSE-EE-CT-----TSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCE-EE-eC-----CCCHHHHHHHhcCCCceE
Confidence            456899999 3 3366777888752236999999999999998874 2110 00 01     1234444443 2467998


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+-...            ..+.++. +.+.|+++|+++.-
T Consensus       243 vid~~g------------~~~~~~~-~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH------------TDKHAAE-IADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC------------HHHHHHH-HHHHSCTTCEEEEC
T ss_pred             EEECCC------------chhhHHH-HHHHhcCCCEEEEE
Confidence            885431            1245666 57899999999864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.84  E-value=0.035  Score=47.88  Aligned_cols=88  Identities=14%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |.++.++++..+. +|++++ +++-.+.+++. +..         .++ .| .+-+   ++.+|+|
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l-Ga~---------~v~-~d-~~~v---~~g~Dvv  203 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR-GVR---------HLY-RE-PSQV---TQKYFAI  203 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH-TEE---------EEE-SS-GGGC---CSCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc-CCC---------EEE-cC-HHHh---CCCccEE
Confidence            3568999999953 5677788887664 999999 88888888874 211         122 24 2222   5789998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-....     +       . ... ..+.|+++|+++.-.
T Consensus       204 ~d~~g~-----~-------~-~~~-~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          204 FDAVNS-----Q-------N-AAA-LVPSLKANGHIICIQ  229 (315)
T ss_dssp             ECC--------------------T-TGGGEEEEEEEEEEC
T ss_pred             EECCCc-----h-------h-HHH-HHHHhcCCCEEEEEe
Confidence            843321     1       1 133 467899999988653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.80  E-value=0.11  Score=45.73  Aligned_cols=94  Identities=19%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ++.+||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++.+...        .-+-..| .+.+.+..+.+|+|+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~lGa~--------~v~~~~~-~~~~~~~~~~~D~vi  256 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGAD--------SFLVSRD-QEQMQAAAGTLDGII  256 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHTSCCS--------EEEETTC-HHHHHHTTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcCCc--------eEEeccC-HHHHHHhhCCCCEEE
Confidence            568999999753 445666677666 48999999998888777443311        1111122 233433335799998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .....+.       .     ++. ..+.|+++|.++.-
T Consensus       257 d~~g~~~-------~-----~~~-~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          257 DTVSAVH-------P-----LLP-LFGLLKSHGKLILV  281 (366)
T ss_dssp             ECCSSCC-------C-----SHH-HHHHEEEEEEEEEC
T ss_pred             ECCCcHH-------H-----HHH-HHHHHhcCCEEEEE
Confidence            6543211       1     123 34678899988754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.72  E-value=0.074  Score=46.13  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f  176 (251)
                      .+.++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ...      ..+.... .|..+.+.. ..+.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~~------~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GFD------AAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CCc------EEEecCCHHHHHHHHHHHhCCCC
Confidence            34688999997  34445556666555 4899999999988888553 210      0011101 334444432 23579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++....      .       +.++. ..+.|+++|.+++-.
T Consensus       216 d~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          216 DCYFDNVG------G-------EFLNT-VLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEESSC------H-------HHHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEECCC------h-------HHHHH-HHHHHhcCCEEEEEe
Confidence            99987642      1       23566 578999999987643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.70  E-value=0.062  Score=47.41  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             CCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECCh---HHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       103 ~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      +++||++|+|+ |..+..+++..+. +|++++.++   +-.+.+++. ...       .+.  ..|..+.+.+....+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~-ga~-------~v~--~~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET-KTN-------YYN--SSNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH-TCE-------EEE--CTTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh-CCc-------eec--hHHHHHHHHHhCCCCCE
Confidence            78999999832 3345566665554 999999998   777887763 211       111  01222233222257999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHH-HHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFY-EFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~-~~~~~~~L~pgG~l~~~~  219 (251)
                      |+.....     +       ..+ +. +.+.|+++|.++.-.
T Consensus       250 vid~~g~-----~-------~~~~~~-~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA-----D-------VNILGN-VIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC-----C-------THHHHH-HGGGEEEEEEEEECS
T ss_pred             EEECCCC-----h-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            9876431     1       134 56 578899999987643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.61  E-value=0.17  Score=44.08  Aligned_cols=98  Identities=15%  Similarity=0.065  Sum_probs=61.1

Q ss_pred             CCCCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~-~~~~f  176 (251)
                      .+.++||++|++  .|..+..+++..+ .+|++++.+++-.+.+++. ..      +.-+.+. ..|..+.+.+ ..+.+
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSI-GG------EVFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHHT-TC------CEEEETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHHc-CC------ceEEecCccHhHHHHHHHHhCCCC
Confidence            346889999983  4555666666555 5899999999888888763 11      0001100 1234444432 12379


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+....     .       .+.++. +.+.|+++|.++.-.
T Consensus       240 D~vi~~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          240 HGVINVSV-----S-------EAAIEA-STRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEEECSS-----C-------HHHHHH-HTTSEEEEEEEEECC
T ss_pred             CEEEECCC-----c-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            99987642     1       245677 688999999987543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.54  E-value=0.15  Score=45.64  Aligned_cols=42  Identities=24%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS  144 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (251)
                      ++.+|++||+|.=+. +..+++..+ .+|+++|.++...+.+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence            568999999985443 333444345 489999999998888776

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.54  E-value=0.038  Score=48.25  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~  170 (251)
                      ..++.-|||..||+|+++..+.+..  .+.+++|+++..++.+++++....     .....+.+|+++...
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~-----~~~~~~~~~~~~i~~  313 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLDNN-----ISEEKITDIYNRILN  313 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCSC-----SCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHc
Confidence            3456789999999999999988863  689999999999999999876432     246667778777653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.52  E-value=0.14  Score=43.67  Aligned_cols=91  Identities=12%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHhcCCCcee
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~~~~~~fD  177 (251)
                      .++++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..        . .++..+- .++.... +.+|
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga--------~-~~~~~~~~~~~~~~~-~~~d  191 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLAL-GA--------E-EAATYAEVPERAKAW-GGLD  191 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHT-TC--------S-EEEEGGGHHHHHHHT-TSEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC--------C-EEEECCcchhHHHHh-cCce
Confidence            45689999997  34556677777666 4899999999888888763 11        1 1222111 2233222 5799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+. ...     +        .++. ..+.|+++|.++.-
T Consensus       192 ~vid-~g~-----~--------~~~~-~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          192 LVLE-VRG-----K--------EVEE-SLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEE-CSC-----T--------THHH-HHTTEEEEEEEEEC
T ss_pred             EEEE-CCH-----H--------HHHH-HHHhhccCCEEEEE
Confidence            9986 431     1        1355 57889999998754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.46  E-value=0.043  Score=47.89  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .++++||++|+|+  |..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ + ...+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-ga~------~~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRL-GAA------YVIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhC-CCc------EEEeCCcccHHHHHHHHhCCCCC
Confidence            4568999999874  556777777655 4899999999988888874 210      0011111344444432 2 3579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+....     .+       .+.+.  .+.|+++|+++.-.
T Consensus       215 Dvvid~~g-----~~-------~~~~~--~~~l~~~G~iv~~G  243 (340)
T 3gms_A          215 DAAIDSIG-----GP-------DGNEL--AFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEESSC-----HH-------HHHHH--HHTEEEEEEEEECC
T ss_pred             cEEEECCC-----Ch-------hHHHH--HHHhcCCCEEEEEe
Confidence            99986532     11       22333  37899999998654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.42  E-value=0.31  Score=43.33  Aligned_cols=96  Identities=19%  Similarity=0.335  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~~~~~fD  177 (251)
                      .+++|+++|+|.=+ .+...++..+ .+|+++|.+++-.+.+++.+..        .+....   .|..+.+    ...|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G-a~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l----~~aD  233 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG-ATVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAV----KRAD  233 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHH----cCCC
Confidence            46899999985433 2233334445 4899999999988877764431        122221   2233333    3689


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +|+.....|..  ....+.+.+.     .+.++|||+++-
T Consensus       234 vVi~~~~~p~~--~t~~li~~~~-----l~~mk~g~~iV~  266 (377)
T 2vhw_A          234 LVIGAVLVPGA--KAPKLVSNSL-----VAHMKPGAVLVD  266 (377)
T ss_dssp             EEEECCCCTTS--CCCCCBCHHH-----HTTSCTTCEEEE
T ss_pred             EEEECCCcCCC--CCcceecHHH-----HhcCCCCcEEEE
Confidence            99986543321  1124444432     456789998763

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.31  E-value=0.18  Score=39.52  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC----CCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~----~~~f  176 (251)
                      .-+.-||++|.|.|-+-.++....+..+|.++|-.      .+.|-..     ..|.-+++.+|+++.+...    +.+-
T Consensus        39 ~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~------~~~hp~~-----~P~~e~~ilGdi~~tL~~~~~r~g~~a  107 (174)
T 3iht_A           39 GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERA------VASHPDS-----TPPEAQLILGDIRETLPATLERFGATA  107 (174)
T ss_dssp             TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESS------CCCCGGG-----CCCGGGEEESCHHHHHHHHHHHHCSCE
T ss_pred             CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEee------eccCCCC-----CCchHheecccHHHHHHHHHHhcCCce
Confidence            34577999999999999888887667899999862      1222111     2356689999999988653    4455


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      -++=.|.-..   .+.....+...+.-.+..+|+|||+++-
T Consensus       108 ~LaHaD~G~g---~~~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          108 SLVHADLGGH---NREKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             EEEEECCCCS---CHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEeecCCC---CcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            5555565322   1111122223333335799999998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.29  E-value=0.082  Score=46.01  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhc-CCC
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~-~~~  174 (251)
                      .++++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++.+...        ..+-.   .|..+.+.. .++
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~g~~--------~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKFGFD--------DAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTSCCS--------EEEETTSCSCSHHHHHHHCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCc--------eEEecCCHHHHHHHHHHHhCC
Confidence            34688999997  44556667777655 58999999999888887433211        11111   133344432 235


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+|+|+....             .+.++. ..+.|+++|.+++-
T Consensus       225 ~~d~vi~~~g-------------~~~~~~-~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVG-------------GKMLDA-VLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSC-------------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             CCcEEEECCC-------------HHHHHH-HHHHHhcCCEEEEE
Confidence            7999986642             124566 57899999998864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.28  E-value=0.1  Score=46.05  Aligned_cols=97  Identities=18%  Similarity=0.307  Sum_probs=62.4

Q ss_pred             CCCCeEEEEe--cCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++++||++|  +|.|..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.++. ..+.+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga~------~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSL-GCD------RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHc-CCc------EEEecCChhHHHHHHHhcCCCCC
Confidence            4568999999  566777788888766 4899999999988888873 210      0000001233343432 245799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+....     .        +.++. +.+.|+++|.++.-.
T Consensus       234 ~vid~~g-----~--------~~~~~-~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          234 VVYESVG-----G--------AMFDL-AVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEECSC-----T--------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC-----H--------HHHHH-HHHHHhcCCEEEEEe
Confidence            9986532     1        24555 567899999988643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.22  E-value=0.12  Score=45.19  Aligned_cols=96  Identities=21%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             CCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      ++.+||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. .... .. +.+     .|..+.+.+ ..+.+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~~-vi-~~~-----~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASRNETIEWTKKM-GADI-VL-NHK-----ESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCSHHHHHHHHHH-TCSE-EE-CTT-----SCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCcE-EE-ECC-----ccHHHHHHHhCCCCccE
Confidence            5689999963  33556677777766 4999999999999998874 2110 00 011     233333332 3457999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+-...            ....++. +.+.|+++|.++...
T Consensus       221 v~d~~g------------~~~~~~~-~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          221 VFCTFN------------TDMYYDD-MIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEESSC------------HHHHHHH-HHHHEEEEEEEEESS
T ss_pred             EEECCC------------chHHHHH-HHHHhccCCEEEEEC
Confidence            986431            1245566 578999999997543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.22  E-value=0.1  Score=45.52  Aligned_cols=95  Identities=21%  Similarity=0.309  Sum_probs=61.0

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      ..+++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+++. ..      +.-+... .|..+.+.+ . ...+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~~v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSV-GA------DIVLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TC------SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC------cEEecCc-hhHHHHHHHHhCCCCc
Confidence            35689999997  44567777777766 4999999999988888874 11      1001111 344444433 2 3479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|+.....     +        .++. ..+.|+++|.++.-
T Consensus       229 Dvvid~~g~-----~--------~~~~-~~~~l~~~G~iv~~  256 (342)
T 4eye_A          229 DMVVDPIGG-----P--------AFDD-AVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEEESCC---------------CHHH-HHHTEEEEEEEEEC
T ss_pred             eEEEECCch-----h--------HHHH-HHHhhcCCCEEEEE
Confidence            999865431     1        2345 46789999998864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.21  E-value=0.066  Score=46.82  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             CCCCeEEEEecCch--HHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CC-Cc
Q 025534          101 PNPKTIFIMGGGEG--STAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G--~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~  175 (251)
                      .+.++||++|+|+|  ..+..+++.. + .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ .. +.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA-GAD------YVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh-CCC------EEecCCCccHHHHHHHHhcCCC
Confidence            35689999999744  3555666654 5 5899999999998888763 210      0000001232222322 22 47


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+|+....     .       .+.++. ..+.|+++|.++.-.
T Consensus       241 ~d~vi~~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          241 VDAVIDLNN-----S-------EKTLSV-YPKALAKQGKYVMVG  271 (347)
T ss_dssp             EEEEEESCC-----C-------HHHHTT-GGGGEEEEEEEEECC
T ss_pred             ceEEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEC
Confidence            999987642     1       134556 578999999988643

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.12  E-value=0.091  Score=47.41  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=40.0

Q ss_pred             CCCCeEEEEecCchHHHHHHH-hcCC-CcEEEEEECChHHHHHHHhchhc
Q 025534          101 PNPKTIFIMGGGEGSTAREIL-RHKT-VEKVVMCDIDEEVVEFCKSYLVV  148 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~-~~~~-~~~v~~VEid~~vi~~a~~~~~~  148 (251)
                      .++..|+|+|++.|..+..++ +..+ ..+|.++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            355789999999999998877 4433 36999999999999999998765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.11  E-value=0.37  Score=42.56  Aligned_cols=97  Identities=21%  Similarity=0.342  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc---chHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~---D~~~~l~~~~~~fD  177 (251)
                      ++++||++|+|.=+ .+..+++..+. +|+++|.+++-.+.+++.+..        .+..+..   |..+.+    ..+|
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~D  232 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--------RVELLYSNSAEIETAV----AEAD  232 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHHHHHH----HTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHHHHHH----cCCC
Confidence            45899999985433 23344444554 899999999988887765431        1222322   222333    2699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||.....+.  .+...+.+.+     ..+.++++|+++.-
T Consensus       233 vVI~~~~~~~--~~~~~li~~~-----~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          233 LLIGAVLVPG--RRAPILVPAS-----LVEQMRTGSVIVDV  266 (361)
T ss_dssp             EEEECCCCTT--SSCCCCBCHH-----HHTTSCTTCEEEET
T ss_pred             EEEECCCcCC--CCCCeecCHH-----HHhhCCCCCEEEEE
Confidence            9987665332  1112333433     24568899987743

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.09  E-value=0.17  Score=38.81  Aligned_cols=99  Identities=20%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH--HHHhcC-CCc
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~--~~l~~~-~~~  175 (251)
                      ....+|+++|+|.=+  ++..+.+ .+ .+|+++|.+++.++.+++          .....++.+|..  +.+... -+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~-~g-~~V~vid~~~~~~~~~~~----------~~g~~~~~~d~~~~~~l~~~~~~~   84 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASS-SG-HSVVVVDKNEYAFHRLNS----------EFSGFTVVGDAAEFETLKECGMEK   84 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-TT-CEEEEEESCGGGGGGSCT----------TCCSEEEESCTTSHHHHHTTTGGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHh----------cCCCcEEEecCCCHHHHHHcCccc
Confidence            356799999986533  2233333 34 489999999876543331          123445556642  233332 257


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +|+|+.....+.         ....... +.+.+.+...++.....
T Consensus        85 ad~Vi~~~~~~~---------~~~~~~~-~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           85 ADMVFAFTNDDS---------TNFFISM-NARYMFNVENVIARVYD  120 (155)
T ss_dssp             CSEEEECSSCHH---------HHHHHHH-HHHHTSCCSEEEEECSS
T ss_pred             CCEEEEEeCCcH---------HHHHHHH-HHHHHCCCCeEEEEECC
Confidence            999998754311         1122233 24455666677766543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.08  E-value=0.095  Score=45.94  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             CCC--CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCc
Q 025534          101 PNP--KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES  175 (251)
Q Consensus       101 ~~~--~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~  175 (251)
                      .+.  ++||+.|++  .|..+..+++..+..+|++++.+++-.+.+++.+...      .-+.....|..+.+.+ ..+.
T Consensus       157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~------~~~d~~~~~~~~~~~~~~~~~  230 (357)
T 2zb4_A          157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD------AAINYKKDNVAEQLRESCPAG  230 (357)
T ss_dssp             CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS------EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc------eEEecCchHHHHHHHHhcCCC
Confidence            345  899999973  3445566666555448999999998888887633211      0001001233333332 2337


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+++...-      .       +.++. ..+.|+++|+++.-
T Consensus       231 ~d~vi~~~G------~-------~~~~~-~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          231 VDVYFDNVG------G-------NISDT-VISQMNENSHIILC  259 (357)
T ss_dssp             EEEEEESCC------H-------HHHHH-HHHTEEEEEEEEEC
T ss_pred             CCEEEECCC------H-------HHHHH-HHHHhccCcEEEEE
Confidence            999987642      1       34566 57899999998864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.05  E-value=0.36  Score=35.98  Aligned_cols=69  Identities=19%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~fD  177 (251)
                      .++|+++|+|.=+  ++..|.+. + .+|+++|.|++.++.+++.           .++++.+|+.+  .+... -+.+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~-g-~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~~d   72 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA-G-KKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEGVS   72 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCcccCC
Confidence            3689999996522  33444443 3 5899999999988877642           35677777653  34332 35799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +|++..+
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            9998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.04  E-value=0.17  Score=45.71  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .+.+|++||+|.-+. +..+++..+ .+|+++|.++...+.+++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~~  232 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG-AVVSATDVRPAAKEQVASL  232 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSTTHHHHHHHT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc
Confidence            468999999985443 344455455 5899999999988888763

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.02  E-value=0.062  Score=46.55  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .++++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++.-.       +.-+.....|..+.+.+ . +..+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKALGA-------WETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCC-------CEEEeCCCccHHHHHHHHhCCCCc
Confidence            34689999994  44556677777655 489999999999998886411       00011111344444433 2 3579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+.....             +.++. ..+.|+++|.++.-.
T Consensus       211 Dvvid~~g~-------------~~~~~-~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVGQ-------------DTWLT-SLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSCG-------------GGHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhcCCCEEEEEe
Confidence            999865321             23455 578999999998654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.02  E-value=0.058  Score=46.88  Aligned_cols=97  Identities=14%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .++++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+++.-. .      .-+.....|..+.+.+ . +..+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga-~------~~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEYGA-E------YLINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-S------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCC-c------EEEeCCCchHHHHHHHHhCCCCc
Confidence            35689999994  44556677777666 589999999999998887411 0      0011111344444433 2 3579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+.....             +.++. +.+.|+++|+++.-.
T Consensus       219 D~vid~~g~-------------~~~~~-~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          219 DASFDSVGK-------------DTFEI-SLAALKRKGVFVSFG  247 (334)
T ss_dssp             EEEEECCGG-------------GGHHH-HHHHEEEEEEEEECC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhccCCEEEEEc
Confidence            999865421             22455 467899999988643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.79  E-value=0.2  Score=45.26  Aligned_cols=94  Identities=24%  Similarity=0.296  Sum_probs=61.4

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCcee
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~fD  177 (251)
                      ..+|+++|+|--+  +++.|.+. + ..|++||.|++.++.+++.           .+.++.+|+.+  .++.. -++.|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~-g-~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~A~   70 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS-G-VKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE   70 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTTCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCccC
Confidence            4679999997633  33444443 3 5899999999999988753           35678888865  34443 36899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++...++.         ....... ..+.+.|+..+++..
T Consensus        71 ~viv~~~~~~---------~n~~i~~-~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           71 VLINAIDDPQ---------TNLQLTE-MVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEEECCSSHH---------HHHHHHH-HHHHHCTTCEEEEEE
T ss_pred             EEEECCCChH---------HHHHHHH-HHHHhCCCCeEEEEE
Confidence            9998765321         1122223 356788887777654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.73  E-value=0.16  Score=43.97  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~f  176 (251)
                      .+.++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..      +.-+.....|..+.+.+  ....+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL-GC------HHTINYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TC------SEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------CEEEECCCHHHHHHHHHHhCCCCC
Confidence            34688999995  55666777777655 5899999999888888763 21      00001001233333322  13479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+.....             +.++. +.+.|+++|.++.-.
T Consensus       216 d~vi~~~g~-------------~~~~~-~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          216 DVVYDSIGK-------------DTLQK-SLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEECSCT-------------TTHHH-HHHTEEEEEEEEECC
T ss_pred             eEEEECCcH-------------HHHHH-HHHhhccCCEEEEEe
Confidence            999966421             12455 467899999987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.54  E-value=0.49  Score=41.84  Aligned_cols=96  Identities=19%  Similarity=0.342  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc---hHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND---ARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D---~~~~l~~~~~~fD  177 (251)
                      .+++|+++|+|.=+ .+...++..+ .+|+++|.+++-.+.+++.+.        ..+.....+   ..+.+    ...|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~g--------~~~~~~~~~~~~l~~~~----~~~D  231 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVFG--------GRVITLTATEANIKKSV----QHAD  231 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTT--------TSEEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcC--------ceEEEecCCHHHHHHHH----hCCC
Confidence            46899999985322 2233333445 489999999988777665332        123332222   22233    3689


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +|+.....+..  ....+.+.+.     .+.++++|+++.
T Consensus       232 vVi~~~g~~~~--~~~~li~~~~-----l~~mk~gg~iV~  264 (369)
T 2eez_A          232 LLIGAVLVPGA--KAPKLVTRDM-----LSLMKEGAVIVD  264 (369)
T ss_dssp             EEEECCC---------CCSCHHH-----HTTSCTTCEEEE
T ss_pred             EEEECCCCCcc--ccchhHHHHH-----HHhhcCCCEEEE
Confidence            99987653320  1123444432     456788997763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.39  E-value=0.59  Score=36.54  Aligned_cols=95  Identities=17%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH--HHHhcC--CCce
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR--KESY  176 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~--~~l~~~--~~~f  176 (251)
                      ..+|+++|+|.=+  ++..|.+..+ .+|+++|.|++.++.+++.           .++++.+|+.  +.+...  -+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRSE-----------GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence            4689999986433  2334433303 4799999999988776642           2455666653  234333  3679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|++..+++.        ........  .+.+.|++.++...
T Consensus       107 d~vi~~~~~~~--------~~~~~~~~--~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMPHHQ--------GNQTALEQ--LQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCSSHH--------HHHHHHHH--HHHTTCCSEEEEEE
T ss_pred             CEEEEeCCChH--------HHHHHHHH--HHHHCCCCEEEEEE
Confidence            99998654311        11223333  35567777777654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.34  E-value=0.098  Score=45.21  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      ...++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ . ...+
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~  210 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GAW------QVINYREEDLVERLKEITGGKKV  210 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEECCCccHHHHHHHHhCCCCc
Confidence            34688999994  44445556666545 4899999999988888763 210      0000001233333322 2 3479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+....      +       +.++. +.+.|+++|.++.-.
T Consensus       211 D~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          211 RVVYDSVG------R-------DTWER-SLDCLQRRGLMVSFG  239 (327)
T ss_dssp             EEEEECSC------G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred             eEEEECCc------h-------HHHHH-HHHHhcCCCEEEEEe
Confidence            99987642      1       22455 578899999988643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.31  E-value=0.18  Score=44.05  Aligned_cols=94  Identities=17%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~f  176 (251)
                      .++.+||++|+  |.|..+..+++..+ .+|+++ .+++-.+.+++. ..      +. +. ...|..+.+..  .+..+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~~~~~~~~l-Ga------~~-i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGSDLEYVRDL-GA------TP-ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHHHHHHHHHH-TS------EE-EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHHHHHHHHHc-CC------CE-ec-cCCCHHHHHHHHhcCCCc
Confidence            35689999994  34667777787766 489999 888888888764 21      11 22 22334444432  23579


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-...     +        +.+.. ..+.|+++|.++.-.
T Consensus       218 D~vid~~g-----~--------~~~~~-~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          218 DLVYDTLG-----G--------PVLDA-SFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEESSC-----T--------HHHHH-HHHHEEEEEEEEESC
T ss_pred             eEEEECCC-----c--------HHHHH-HHHHHhcCCeEEEEc
Confidence            99886432     1        23555 467899999988643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.26  E-value=0.19  Score=43.81  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             CCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      +.++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ . ...+|
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-ga~------~~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL-GAD------ETVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CCC------EEEcCCcccHHHHHHHHhCCCCce
Confidence            4689999998  55667777777665 4899999999999888763 210      0011001233333332 2 34799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+.... +            +.++. +.+.|+++|.++.-.
T Consensus       238 ~vi~~~g-~------------~~~~~-~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          238 KVVDHTG-A------------LYFEG-VIKATANGGRIAIAG  265 (343)
T ss_dssp             EEEESSC-S------------SSHHH-HHHHEEEEEEEEESS
T ss_pred             EEEECCC-H------------HHHHH-HHHhhccCCEEEEEe
Confidence            9997643 1            11344 467889999887643

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.20  E-value=0.96  Score=45.42  Aligned_cols=126  Identities=10%  Similarity=0.092  Sum_probs=81.1

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc----------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~----------  171 (251)
                      +-++++|-||.|++..-+.+. +. ..+.++|+|+..++..+.++         |...++.+|..++...          
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~---------p~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN---------PGSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC---------TTSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC---------CCCccccccHHHHhhhccchhhhhhh
Confidence            347999999999999887765 44 46889999999999888775         3457788887765310          


Q ss_pred             -----CCCceeEEEEcCCCCCCCCcccC-----------CccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534          172 -----RKESYDVIIGDLADPIEGGPCYK-----------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (251)
Q Consensus       172 -----~~~~fD~Ii~D~~~~~~~~p~~~-----------l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~  235 (251)
                           ....+|+|+.-+|.+.. ..+..           -+-.+|++.  .+.++|.-+++=|+..--.+.....+..++
T Consensus       610 ~~~lp~~~~vDll~GGpPCQ~F-S~ag~~~~~~~~d~R~~L~~~~~ri--v~~~rPk~~llENV~glls~~~~~~~~~i~  686 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGPPCQGF-SGMNRFNSRTYSKFKNSLVVSFLSY--CDYYRPRFFLLENVRNFVSFKRSMVLKLTL  686 (1002)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTC-CSSSCCCHHHHHHHTTSHHHHHHHH--HHHHCCSEEEEEEEGGGGTTGGGHHHHHHH
T ss_pred             hhhcccCCCeeEEEEcCCCcch-hhhCCCCCCcccchhhHHHHHHHHH--HHHhCCCEEEEeccHHHhccCcchHHHHHH
Confidence                 12368999998874321 11111           111345554  356899877766652110012245677777


Q ss_pred             HHHHhh
Q 025534          236 NTLRQV  241 (251)
Q Consensus       236 ~~l~~~  241 (251)
                      +.|.+.
T Consensus       687 ~~L~~l  692 (1002)
T 3swr_A          687 RCLVRM  692 (1002)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            777764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.95  E-value=0.11  Score=45.54  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=60.1

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.. ..+.+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~------~~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKCEACERL-GAK------RGINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCC------EEEeCCchHHHHHHHHHhCCCce
Confidence            35688999964  34556777777666 4899999999999988874 110      0011111233333322 246799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+....     .        +.++. ..+.|+++|.++.-.
T Consensus       238 vvid~~g-----~--------~~~~~-~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          238 IILDMIG-----A--------AYFER-NIASLAKDGCLSIIA  265 (353)
T ss_dssp             EEEESCC-----G--------GGHHH-HHHTEEEEEEEEECC
T ss_pred             EEEECCC-----H--------HHHHH-HHHHhccCCEEEEEE
Confidence            9986542     1        12445 467899999987643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.49  E-value=0.78  Score=41.93  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchh-----------cccCCCCCCCeEEEEcchHHHH
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----------VNKEAFSDPRLELVINDARAEL  169 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----------~~~~~~~~~rv~~~~~D~~~~l  169 (251)
                      .++|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+++...           ...........++ ..|. +-+
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~-G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~~  112 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV-G-ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KEL  112 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HHH
Confidence            3679999999733  45555554 3 489999999999887765321           1110001122333 4553 222


Q ss_pred             hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                          ...|+||...+...       -...++++. +...++|+.+++.++.+
T Consensus       113 ----~~aDlVIeaVpe~~-------~~k~~v~~~-l~~~~~~~~ii~snTs~  152 (463)
T 1zcj_A          113 ----STVDLVVEAVFEDM-------NLKKKVFAE-LSALCKPGAFLCTNTSA  152 (463)
T ss_dssp             ----TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCSS
T ss_pred             ----CCCCEEEEcCCCCH-------HHHHHHHHH-HHhhCCCCeEEEeCCCC
Confidence                46899999875311       113467787 68889999888876543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=92.38  E-value=0.35  Score=42.65  Aligned_cols=96  Identities=11%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             CCCCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++.+||++|++  .|.++.++++..+ .+|+++- +++-.+.+++.-.       +.-+.....|..+.+++ +++.+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G-a~Vi~~~-~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG-YIPIATC-SPHNFDLAKSRGA-------EEVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHTTC-------SEEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe-CHHHHHHHHHcCC-------cEEEECCCchHHHHHHHHccCCcc
Confidence            456889999984  5677888888766 4787774 8888888877411       00111112344444443 345699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccC-CCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L-~pgG~l~~~  218 (251)
                      +|+-...     .       .+.++. ..+.| +++|+++.-
T Consensus       234 ~v~d~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          234 YALDCIT-----N-------VESTTF-CFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EEEESSC-----S-------HHHHHH-HHHHSCTTCEEEEES
T ss_pred             EEEECCC-----c-------hHHHHH-HHHHhhcCCCEEEEE
Confidence            9985432     1       234555 46678 699998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.38  E-value=0.92  Score=39.23  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=59.1

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchh--cccCCCC-CCCeEEEEcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV--VNKEAFS-DPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~--~~~~~~~-~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+|.+||+|.-+  ++..+.+. + .+|++++.+++.++..++...  ..+.... ..++.....|..+.+    +.+|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~   78 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   78 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCCE
Confidence            589999998633  34445443 3 479999999988877665421  1110000 011112345554444    36999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |++-.+.+.         ..+.++. +...|+++.+++.
T Consensus        79 vi~~v~~~~---------~~~~~~~-l~~~l~~~~~vv~  107 (359)
T 1bg6_A           79 ILIVVPAIH---------HASIAAN-IASYISEGQLIIL  107 (359)
T ss_dssp             EEECSCGGG---------HHHHHHH-HGGGCCTTCEEEE
T ss_pred             EEEeCCchH---------HHHHHHH-HHHhCCCCCEEEE
Confidence            999865321         2577788 7888998876554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.15  E-value=0.78  Score=34.75  Aligned_cols=98  Identities=10%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECC-hHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCce
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID-EEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY  176 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid-~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~f  176 (251)
                      .++|+++|+|.=+  ++..|.+. + .+|+++|.+ ++-.+..++.+        ...++++.+|+.+  .+... -+..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~-g-~~V~vid~~~~~~~~~~~~~~--------~~~~~~i~gd~~~~~~l~~a~i~~a   72 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR-G-QNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRC   72 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-CCEEEEECCChHHHHHHHHhh--------cCCCeEEEcCCCCHHHHHHcChhhC
Confidence            4689999875332  23333333 3 589999998 45444433322        1347888888753  34332 3679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |+|++...+..         ....... ..+.+.|...+++...
T Consensus        73 d~vi~~~~~d~---------~n~~~~~-~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           73 RAILALSDNDA---------DNAFVVL-SAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             SEEEECSSCHH---------HHHHHHH-HHHHHTSSSCEEEECS
T ss_pred             CEEEEecCChH---------HHHHHHH-HHHHHCCCCEEEEEEC
Confidence            99998754321         1122233 3456777777776553

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.12  E-value=0.37  Score=42.42  Aligned_cols=97  Identities=15%  Similarity=0.260  Sum_probs=57.2

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+||+.|+  |-|..+.++++..+ .+|++++ +++-.+.+++. ..      +.-+.....|..+-+... ..+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga------~~v~~~~~~~~~~~~~~~-~g~D~  251 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVC-SQDASELVRKL-GA------DDVIDYKSGSVEEQLKSL-KPFDF  251 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TC------SEEEETTSSCHHHHHHTS-CCBSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEe-ChHHHHHHHHc-CC------CEEEECCchHHHHHHhhc-CCCCE
Confidence            34689999994  44556777777766 5898888 66667777653 11      000110112333444332 57999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+-....     +      ...++. ..+.|+++|.++.-.
T Consensus       252 vid~~g~-----~------~~~~~~-~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          252 ILDNVGG-----S------TETWAP-DFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEESSCT-----T------HHHHGG-GGBCSSSCCEEEESC
T ss_pred             EEECCCC-----h------hhhhHH-HHHhhcCCcEEEEeC
Confidence            9865421     1      012344 468899999998643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.11  E-value=0.17  Score=44.44  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .+.++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++.-.       +.-+.....|..+.+.+ . ...+
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga-------~~~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHcCC-------CEEEeCCCchHHHHHHHHcCCCCc
Confidence            34689999997  34455666666655 589999999998888876411       00011111233333322 2 3479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|+....     .        +.+.. ..+.|+++|.++.-
T Consensus       241 D~vi~~~G-----~--------~~~~~-~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          241 DIIIEMLA-----N--------VNLSK-DLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEEESCH-----H--------HHHHH-HHHHEEEEEEEEEC
T ss_pred             EEEEECCC-----h--------HHHHH-HHHhccCCCEEEEE
Confidence            99986632     1        23455 46789999998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.09  E-value=0.54  Score=42.42  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .++++||+.|+  |-|..+..+++..+ .++++++.+++-.+.+++.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc
Confidence            35688999996  33556777777765 5888999999999988764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.08  E-value=1.3  Score=37.00  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~-~fD~Ii  180 (251)
                      ++|.+||+|.=+  ++..+.+.....+|+++|.+++.++.+++. +.     . +  . ...|..+.+    + ..|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~-----~-~--~-~~~~~~~~~----~~~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI-----I-D--E-GTTSIAKVE----DFSPDFVM   67 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS-----C-S--E-EESCGGGGG----GTCCSEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CC-----c-c--c-ccCCHHHHh----cCCCCEEE
Confidence            479999988533  344454432113799999999988877643 10     0 0  1 123433322    3 689999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +..+..         ...+.++. +...++++.+++.
T Consensus        68 lavp~~---------~~~~v~~~-l~~~l~~~~iv~~   94 (281)
T 2g5c_A           68 LSSPVR---------TFREIAKK-LSYILSEDATVTD   94 (281)
T ss_dssp             ECSCHH---------HHHHHHHH-HHHHSCTTCEEEE
T ss_pred             EcCCHH---------HHHHHHHH-HHhhCCCCcEEEE
Confidence            986421         13466777 6778888876654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.06  E-value=1.3  Score=40.67  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCCC--------CCCeEEEEcchHHHHh
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFS--------DPRLELVINDARAELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~~--------~~rv~~~~~D~~~~l~  170 (251)
                      ...+|.+||+|.=+  ++..+++. + .+|+++|+|++.++..++.- +.......        ..++++ ..|..+.+ 
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~-G-~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~-   82 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI-G-HDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV-   82 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh-
Confidence            34789999999543  45555554 3 48999999999999887642 11000000        123333 34444333 


Q ss_pred             cCCCceeEEEEcCCCCCC-CCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          171 SRKESYDVIIGDLADPIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~-~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                         +..|+||+..+.|.. .+.+.--+..+.++. +.+.|+++-+++..++
T Consensus        83 ---~~aDvviiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           83 ---AHGDVQFIAVGTPPDEDGSADLQYVLAAARN-IGRYMTGFKVIVDKST  129 (478)
T ss_dssp             ---HHCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECSC
T ss_pred             ---hcCCEEEEEeCCCcccCCCccHHHHHHHHHH-HHHhcCCCCEEEEeCC
Confidence               358999998775531 111122234567777 6788998777655443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.96  E-value=0.69  Score=40.30  Aligned_cols=106  Identities=9%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCCC--------CCeEEEEcc
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD--------PRLELVIND  164 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~--------~rv~~~~~D  164 (251)
                      +...+|.+||+|+=+  ++..++.. + -.|+.+|++++.++.++++....      ...+..        .+++. ..|
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~-G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~   80 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASG-G-FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTN   80 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECC
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccc
Confidence            456899999998654  34444443 4 58999999999988877654211      000100        12222 234


Q ss_pred             hHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       165 ~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ..+.+    ...|+|+=..+...       -.-++.|++ +.++++|+.+|+.|+.+
T Consensus        81 l~~a~----~~ad~ViEav~E~l-------~iK~~lf~~-l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           81 LAEAV----EGVVHIQECVPENL-------DLKRKIFAQ-LDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             HHHHT----TTEEEEEECCCSCH-------HHHHHHHHH-HHTTCCSSSEEEECCSS
T ss_pred             hHhHh----ccCcEEeeccccHH-------HHHHHHHHH-HHHHhhhcceeehhhhh
Confidence            33333    45899997765321       124688999 79999999999988753

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.91  E-value=0.18  Score=44.18  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=58.3

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      ..+++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ . ...+
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQMAEKL-GAA------AGFNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCc------EEEecCChHHHHHHHHHhcCCCc
Confidence            34688999985  34455666666655 5899999999988888653 210      0000001233333322 2 2479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+....     .+        .++. ..+.|+++|.++.-.
T Consensus       233 d~vi~~~G-----~~--------~~~~-~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          233 NLILDCIG-----GS--------YWEK-NVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEEESSC-----GG--------GHHH-HHHHEEEEEEEEECC
T ss_pred             eEEEECCC-----ch--------HHHH-HHHhccCCCEEEEEe
Confidence            99987642     11        1344 467889999988654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.72  E-value=0.28  Score=41.08  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ..++||++|+|+=+  ++..|++. ++.+++.+|.|.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            35799999997432  34455554 667999999996

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.62  E-value=0.32  Score=40.21  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             HHHHHhHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEEC--ChHHHHHHHhchhcccCCCCCCCeEEEEcch
Q 025534           90 ESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (251)
Q Consensus        90 e~l~~~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEi--d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~  165 (251)
                      |.+...|+......++||++|+|.=+..  ..|++. + ++|++|+.  ++++.+++.+           .+++++..+.
T Consensus        18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~-G-A~VtVvap~~~~~l~~l~~~-----------~~i~~i~~~~   84 (223)
T 3dfz_A           18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE-G-AAITVVAPTVSAEINEWEAK-----------GQLRVKRKKV   84 (223)
T ss_dssp             ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGG-C-CCEEEECSSCCHHHHHHHHT-----------TSCEEECSCC
T ss_pred             cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEECCCCCHHHHHHHHc-----------CCcEEEECCC
Confidence            4455568777778999999999865543  344443 3 58888864  3444444432           3456654442


Q ss_pred             HHHHhcCCCceeEEEEcCC
Q 025534          166 RAELESRKESYDVIIGDLA  184 (251)
Q Consensus       166 ~~~l~~~~~~fD~Ii~D~~  184 (251)
                      ..   ..-..+|+||....
T Consensus        85 ~~---~dL~~adLVIaAT~  100 (223)
T 3dfz_A           85 GE---EDLLNVFFIVVATN  100 (223)
T ss_dssp             CG---GGSSSCSEEEECCC
T ss_pred             CH---hHhCCCCEEEECCC
Confidence            21   11246899987654

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=91.55  E-value=1.2  Score=43.23  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             CeEEEEecCchHHHHHHHhcC-----CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          104 KTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      .+|+||-||.|+++.-+.+..     ...-+.++|+|+.+++.-+.+++         ...++++|..++
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---------~~~~~~~di~~i  273 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---------QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---------TSEEEESCHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---------CCceecCcHHHh
Confidence            469999999999987765531     12457899999999999888753         345555655443

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.48  E-value=0.31  Score=42.42  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECCh---HHHHHHHhchh
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLV  147 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~~~  147 (251)
                      ..++..|||.-||+|+++..+.+..  .+.+++|+++   ..++.+++++.
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~  288 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ  288 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHH
Confidence            3566789999999999999988873  6899999999   99999998865

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.40  E-value=3.8  Score=34.47  Aligned_cols=76  Identities=20%  Similarity=0.364  Sum_probs=47.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChH-HHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~-vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~  171 (251)
                      ++++||+.|+++|.   +++.+++. + .+|.+++.+++ ..+...+....     ...++.++..|..+.      ++.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKE-G-ANIAIAYLDEEGDANETKQYVEK-----EGVKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSCHHHHHHHHHHHHT-----TTCCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCchHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHH
Confidence            46789999987664   44555554 3 58999998865 33333333322     135788888887542      211


Q ss_pred             ---CCCceeEEEEcCC
Q 025534          172 ---RKESYDVIIGDLA  184 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~  184 (251)
                         .-++.|++|.++.
T Consensus       119 ~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               1247899999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.30  E-value=1.7  Score=31.63  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=42.2

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH--HHHhcC-CCcee
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~--~~l~~~-~~~fD  177 (251)
                      ..+|+++|+|.=+  ++..+.+. + .+|+++|.+++.++..++.+          .+.++.+|..  +.+... -+.+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~-g-~~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK-G-HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCHHHHHHcCcccCC
Confidence            3589999886433  23344443 3 58999999998776655321          2345555543  223222 35799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +|++..+
T Consensus        72 ~vi~~~~   78 (140)
T 1lss_A           72 MYIAVTG   78 (140)
T ss_dssp             EEEECCS
T ss_pred             EEEEeeC
Confidence            9998864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.25  E-value=1.9  Score=39.28  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             CCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCC--------CCCCeEEEEcchHHHHhc
Q 025534          103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF--------SDPRLELVINDARAELES  171 (251)
Q Consensus       103 ~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~--------~~~rv~~~~~D~~~~l~~  171 (251)
                      .-|+-+||+|.=++  +..+++. + -+|+++|+|++.++..++... .....+        ...++++ ..|..+-+  
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G-~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~--   82 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-G-HEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV--   82 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH--
Confidence            46899999986554  4455554 3 489999999999988776311 000000        0123433 35655544  


Q ss_pred             CCCceeEEEEcCCCCCC--CCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          172 RKESYDVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~--~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                        +..|+||+..+.|..  .+.+.--+-.+.++. +.+.|++|-+++..+.
T Consensus        83 --~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~-i~~~l~~g~iVV~~ST  130 (446)
T 4a7p_A           83 --KDADAVFIAVGTPSRRGDGHADLSYVFAAARE-IAENLTKPSVIVTKST  130 (446)
T ss_dssp             --TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHH-HHHSCCSCCEEEECSC
T ss_pred             --hcCCEEEEEcCCCCccccCCccHHHHHHHHHH-HHHhcCCCCEEEEeCC
Confidence              357999998765531  111111123566677 6788998887776553

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.06  E-value=0.52  Score=39.70  Aligned_cols=77  Identities=12%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---H----h-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---L----E-  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l----~-  170 (251)
                      +++.||+.|+++|.   +++.+++. + .+|.+++.++.-.+.+.+.+...    ...++.++..|..+.   +    . 
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSN-G-IMVVLTCRDVTKGHEAVEKLKNS----NHENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEccCCCcHHHHHHHHHH
Confidence            46789999987663   45555554 4 58999999988766655544322    235788888887543   1    1 


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        ...++.|++|.++-
T Consensus        85 ~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           85 IKTHFGKLDILVNNAG  100 (311)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHhCCCCCEEEECCc
Confidence              11257999999875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.02  E-value=0.48  Score=40.74  Aligned_cols=91  Identities=15%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             eEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHhc-CCCceeEEE
Q 025534          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-RKESYDVII  180 (251)
Q Consensus       105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~~-~~~~fD~Ii  180 (251)
                      +||++|+  |.|..+.++++..+ .+|++++.+++-.+.+++. ...        .-+-..|. .+.++. ..+.+|+|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga~--------~~i~~~~~~~~~~~~~~~~~~d~vi  221 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVL-GAK--------EVLAREDVMAERIRPLDKQRWAAAV  221 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHT-TCS--------EEEECC---------CCSCCEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-CCc--------EEEecCCcHHHHHHHhcCCcccEEE
Confidence            7999997  44556777777766 4799999998888888763 210        00111111 112222 235799988


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      -...     .+        .++. ..+.|+++|+++.-.
T Consensus       222 d~~g-----~~--------~~~~-~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          222 DPVG-----GR--------TLAT-VLSRMRYGGAVAVSG  246 (328)
T ss_dssp             ECST-----TT--------THHH-HHHTEEEEEEEEECS
T ss_pred             ECCc-----HH--------HHHH-HHHhhccCCEEEEEe
Confidence            5532     11        1344 467899999988643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.00  E-value=1  Score=40.01  Aligned_cols=42  Identities=19%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS  144 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~  144 (251)
                      .+++|+++|+|.=+. +..+++..+ .+|+++|.++.-.+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence            578999999975443 344455455 479999999987777766

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=90.94  E-value=0.28  Score=42.13  Aligned_cols=90  Identities=23%  Similarity=0.283  Sum_probs=57.4

Q ss_pred             eEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~  181 (251)
                      +||++|+  |.|.++.++++..+. +|++++.+++-.+.+++. +..         .++..+-...++. ..+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL-GAN---------RILSRDEFAESRPLEKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH-TCS---------EEEEGGGSSCCCSSCCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-CCC---------EEEecCCHHHHHhhcCCCccEEEE
Confidence            5999996  456678888887664 899999999999998874 210         1111110111222 2357998774


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ..      +       .+.++. ..+.|+++|+++.-.
T Consensus       218 ~~------g-------~~~~~~-~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          218 TV------G-------DKVLAK-VLAQMNYGGCVAACG  241 (324)
T ss_dssp             SS------C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred             CC------C-------cHHHHH-HHHHHhcCCEEEEEe
Confidence            32      1       135666 578999999988643

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.92  E-value=1.3  Score=31.34  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCCCceeE
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYDV  178 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~~~fD~  178 (251)
                      .++|+++|+|.-+  ++..+++. +..+|++++.+++-.+..++           ..++++..|..+  .+...-+.+|+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence            4689999984222  23344443 43689999999987766552           234555555432  22222247999


Q ss_pred             EEEcC
Q 025534          179 IIGDL  183 (251)
Q Consensus       179 Ii~D~  183 (251)
                      |+...
T Consensus        73 vi~~~   77 (118)
T 3ic5_A           73 VISAA   77 (118)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.91  E-value=1.1  Score=37.09  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------H---
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L---  169 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l---  169 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-++.+.+.+...     ..++.++..|..+.      +   
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   78 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAE-G-FTVFAGRRNGEKLAPLVAEIEAA-----GGRIVARSLDARNEDEVTAFLNAA   78 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHT-T-CEEEEEESSGGGGHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEECcCCCHHHHHHHHHHH
Confidence            56789999988764   45555554 4 58999999988776665544322     35788888886432      1   


Q ss_pred             hcCCCceeEEEEcCC
Q 025534          170 ESRKESYDVIIGDLA  184 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~  184 (251)
                      .+. ++.|++|.++-
T Consensus        79 ~~~-g~id~lv~nAg   92 (252)
T 3h7a_A           79 DAH-APLEVTIFNVG   92 (252)
T ss_dssp             HHH-SCEEEEEECCC
T ss_pred             Hhh-CCceEEEECCC
Confidence            123 57999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=90.90  E-value=2.7  Score=38.52  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCC-------CCCCeEEEEcchHHHHhcCC
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK  173 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~-------~~~rv~~~~~D~~~~l~~~~  173 (251)
                      .+|.+||+|.=+  ++..+++.....+|+++|++++.++..++.. +.....+       ...++++ ..|..+.+    
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~~----   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPKAI----   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHh----
Confidence            589999998654  4555666521258999999999988876521 1100000       0012332 34443433    


Q ss_pred             CceeEEEEcCCCCCCC-C----cccCC-ccHHHHHHHHcccCCCCcEEEEec
Q 025534          174 ESYDVIIGDLADPIEG-G----PCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~-~----p~~~l-~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...|+|++..+.|... +    ....+ +..+..+. +.+.|++|.+++..+
T Consensus        85 ~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           85 AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRT-IAQYAGGPKIVVEKS  135 (481)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             hcCCEEEEecCCccccccccccCCCcHHHHHHHHHH-HHHhCCCCCEEEECC
Confidence            2579999987654310 0    00011 23566777 678899877666443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=90.84  E-value=2.2  Score=34.62  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch--------HHHHh
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--------RAELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~--------~~~l~  170 (251)
                      +++.||+.|+++|.   +++.+++. + .+|..++.+++-++...+.+...    ..+++.++..|.        .++++
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~d~d~~~~~~~~~~~~   86 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAH-G-ASVVLLGRTEASLAEVSDQIKSA----GQPQPLIIALNLENATAQQYRELAA   86 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT----TSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEecCHHHHHHHHHHHHhc----CCCCceEEEeccccCCHHHHHHHHH
Confidence            46789999987653   44555554 3 58999999998877666555422    124566766665        12222


Q ss_pred             c---CCCceeEEEEcCC
Q 025534          171 S---RKESYDVIIGDLA  184 (251)
Q Consensus       171 ~---~~~~fD~Ii~D~~  184 (251)
                      .   .-++.|++|.++.
T Consensus        87 ~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           87 RVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             HHHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence            1   1247999999875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.73  E-value=2.4  Score=34.97  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      ++++||+.|+++|.   +++.+++. + .+|..++.+++-++...+.+.        .++.++..|..+.      ++  
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEG-G-AEVLLTGRNESNIARIREEFG--------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHhC--------CcceEEEccCCCHHHHHHHHHHH
Confidence            56889999987664   45555554 4 589999999887776554431        3677777776432      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++-
T Consensus        77 ~~~~g~id~lv~nAg   91 (255)
T 4eso_A           77 GQTLGAIDLLHINAG   91 (255)
T ss_dssp             HHHHSSEEEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence             11257999999874

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=90.72  E-value=3.3  Score=42.86  Aligned_cols=126  Identities=10%  Similarity=0.101  Sum_probs=80.4

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc----------
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~----------  171 (251)
                      .-++++|-||.|++..-+.+. +. ..+.++|+|+.+++..+.+++         ...++.+|..+++..          
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~gdi~~~~  920 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNNP---------GTTVFTEDCNVLLKLVMAGEVTNSL  920 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHTTTCSBCSS
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC---------CCcEeeccHHHHhHhhhccchhhhh
Confidence            457999999999999887764 43 468899999999998887753         456778888766421          


Q ss_pred             -----CCCceeEEEEcCCCCCCCCcccCC-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534          172 -----RKESYDVIIGDLADPIEGGPCYKL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (251)
Q Consensus       172 -----~~~~fD~Ii~D~~~~~~~~p~~~l-----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~  235 (251)
                           .....|+|+--+|.+.... +...           +-.+|++.  -+.++|.-+++=|+..--.+.....+..++
T Consensus       921 ~~~lp~~~~vDvl~GGpPCQ~FS~-agr~~~~~~~d~R~~L~~~~lri--v~~~rPk~fv~ENV~glls~~~g~~~~~il  997 (1330)
T 3av4_A          921 GQRLPQKGDVEMLCGGPPCQGFSG-MNRFNSRTYSKFKNSLVVSFLSY--CDYYRPRFFLLENVRNFVSYRRSMVLKLTL  997 (1330)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTTCS-SSCCCHHHHHHHHHSHHHHHHHH--HHHHCCSEEEEEEEGGGGTTTTTHHHHHHH
T ss_pred             hhhccccCccceEEecCCCccccc-ccccccccccchhhHHHHHHHHH--HHHhcCcEEEEeccHHHhccCccHHHHHHH
Confidence                 0136899999887432111 1110           11345554  356899866665552110012334677777


Q ss_pred             HHHHhh
Q 025534          236 NTLRQV  241 (251)
Q Consensus       236 ~~l~~~  241 (251)
                      +.|.+.
T Consensus       998 ~~L~~l 1003 (1330)
T 3av4_A          998 RCLVRM 1003 (1330)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            777765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=90.66  E-value=0.041  Score=60.33  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             eEEEEecCchHHHHHHHhcCC-----CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          105 TIFIMGGGEGSTAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      |||+||.|+|..+..+++.-.     ..+.|..|+++...+.+++.|...       .++.-.-|..+.-......||+|
T Consensus      1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-------di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A         1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-------HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp             EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-------TEEEECCCSSCCCC-----CCEE
T ss_pred             eEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-------ccccccccccccccCCCCceeEE


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |....-+......      +.+.. +++.|+|||.+++
T Consensus      1316 ia~~vl~~t~~~~------~~l~~-~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1316 VCNCALATLGDPA------VAVGN-MAATLKEGGFLLL 1346 (2512)
T ss_dssp             EEECC---------------------------CCEEEE
T ss_pred             EEcccccccccHH------HHHHH-HHHhcCCCcEEEE

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.61  E-value=0.71  Score=38.59  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=24.6

Q ss_pred             CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|+|+ |. ++..|++ .++.+++.+|-|.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~-~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAG-AGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHH-TTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHH-cCCCeEEEEeCCC
Confidence            457999999984 43 3445555 4778999998873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.52  E-value=1.6  Score=35.10  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcC-CCceeEE
Q 025534          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESR-KESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~-~~~fD~I  179 (251)
                      +|+++|+|.=+  ++..|.+. + .+|+++|.|++.++...+.          ..+.++.+|+.+.  +... -+..|+|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g-~~v~vid~~~~~~~~l~~~----------~~~~~i~gd~~~~~~l~~a~i~~ad~v   69 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-K-YGVVIINKDRELCEEFAKK----------LKATIIHGDGSHKEILRDAEVSKNDVV   69 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHH----------SSSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred             EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHH----------cCCeEEEcCCCCHHHHHhcCcccCCEE
Confidence            68999974322  23333333 3 4899999999988765432          1356788887642  3332 3679999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ++...+..         ....... ..+.+.+...+++...
T Consensus        70 i~~~~~d~---------~n~~~~~-~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           70 VILTPRDE---------VNLFIAQ-LVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             EECCSCHH---------HHHHHHH-HHHHTSCCCEEEECCC
T ss_pred             EEecCCcH---------HHHHHHH-HHHHHcCCCeEEEEEe
Confidence            98754321         1123333 3455667776766543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=90.45  E-value=0.46  Score=41.41  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             CCCCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      .++.+||+.|++  .|.++..+++..+..+|.+++ +++-.+.++  +...      .-+. ...|..+.+.+ .++.+|
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~------~~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVT------HLFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSS------EEEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCc------EEEc-CCccHHHHHHHhcCCCce
Confidence            356899999983  355667777765456888887 555555555  2211      1111 12344444432 346899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-...     ++        .++. ..+.|+++|++++-.
T Consensus       211 vv~d~~g-----~~--------~~~~-~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          211 IVLDCLC-----GD--------NTGK-GLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEECC---------------------CTTEEEEEEEEEEC
T ss_pred             EEEECCC-----ch--------hHHH-HHHHhhcCCEEEEEC
Confidence            9986542     11        1234 478999999998654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.43  E-value=3.2  Score=34.04  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch--H------HHHh
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--R------AELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~--~------~~l~  170 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+....    ..++.++..|.  .      +.+.
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   84 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARY-G-ATVILLGRNEEKLRQVASHINEET----GRQPQWFILDLLTCTSENCQQLAQ   84 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHH----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhhc----CCCceEEEEecccCCHHHHHHHHH
Confidence            46789999987663   45555554 3 589999999887776655443221    23667777776  1      1221


Q ss_pred             ---cCCCceeEEEEcCC
Q 025534          171 ---SRKESYDVIIGDLA  184 (251)
Q Consensus       171 ---~~~~~fD~Ii~D~~  184 (251)
                         ..-++.|++|.++-
T Consensus        85 ~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           85 RIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHHHHCSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence               12357999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.42  E-value=2.9  Score=38.02  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCC--------CCCeEEEEcchHHHHhcC
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS--------DPRLELVINDARAELESR  172 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~--------~~rv~~~~~D~~~~l~~~  172 (251)
                      .+|.+||+|.=+  ++..+++. + .+|+++|+|++.++..++... .....+.        ..++++ ..|..+.+   
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~-G-~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL-G-ANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV---   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-C-CEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence            479999998544  34455554 3 489999999999887766311 0000000        123443 34555444   


Q ss_pred             CCceeEEEEcCCCCCC-CCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~-~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       +..|+||+..+.+.. .+...--+..+.++. +.+.|++|-+++..+
T Consensus        77 -~~aDvViiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           77 -PEADIIFIAVGTPAGEDGSADMSYVLDAARS-IGRAMSRYILIVTKS  122 (450)
T ss_dssp             -GGCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             -hcCCEEEEEcCCCcccCCCcChHHHHHHHHH-HHhhCCCCCEEEEee
Confidence             357999998765431 111111123566777 678888877666544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.36  E-value=0.86  Score=40.87  Aligned_cols=43  Identities=23%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .+.+|+++|+|.=+. +..+++..+ .+|+++|.++...+.+++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~l  214 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM  214 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc
Confidence            478999999975443 344455455 4899999999888877553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.26  E-value=7  Score=33.34  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECC--hHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ...+|.+||+|.=+  ++..+++. +..+|+++|.+  ++..+.+++.           .++ ...|..+.+.    ..|
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~~~-----------g~~-~~~~~~e~~~----~aD   85 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAEEL-----------GVS-CKASVAEVAG----ECD   85 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHHHT-----------TCE-ECSCHHHHHH----HCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHHHC-----------CCE-EeCCHHHHHh----cCC
Confidence            34689999998543  45556655 32489999997  5766665542           122 2234455443    479


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +||+..+.+.         ..+.++. +...|+++.+++ +..+    ..+.....+.+.+.+.
T Consensus        86 vVi~~vp~~~---------~~~~~~~-l~~~l~~~~ivv-d~st----~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           86 VIFSLVTAQA---------ALEVAQQ-AGPHLCEGALYA-DFTS----CSPAVKRAIGDVISRH  134 (312)
T ss_dssp             EEEECSCTTT---------HHHHHHH-HGGGCCTTCEEE-ECCC----CCHHHHHHHHHHHHHH
T ss_pred             EEEEecCchh---------HHHHHHh-hHhhcCCCCEEE-EcCC----CCHHHHHHHHHHHHhh
Confidence            9999876432         1345677 688898877665 4322    1234445555556554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.26  E-value=1.2  Score=36.18  Aligned_cols=95  Identities=15%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~f  176 (251)
                      ..++|+++|+|  .++..+++.  .... |+++|.|++.++.++ .           .++++.+|+.+  .+... -+..
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~-----------~~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-S-----------GANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-T-----------TCEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-c-----------CCeEEEcCCCCHHHHHhcCcchh
Confidence            34689999985  444444442  1124 999999998876554 1           36788888763  44333 3679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |.|++...+..         ....... ..+.+.|+..+++....
T Consensus        73 d~vi~~~~~d~---------~n~~~~~-~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           73 RAVIVDLESDS---------ETIHCIL-GIRKIDESVRIIAEAER  107 (234)
T ss_dssp             SEEEECCSCHH---------HHHHHHH-HHHHHCSSSEEEEECSS
T ss_pred             cEEEEcCCCcH---------HHHHHHH-HHHHHCCCCeEEEEECC
Confidence            99998754311         1112222 34567887777776543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.07  E-value=0.88  Score=39.02  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=54.8

Q ss_pred             CCCCeEEEEe--cCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcCCCcee
Q 025534          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~~~~fD  177 (251)
                      .++.+||++|  +|.|.++..+++..+ .+|+++.. ++-.+.+++. ...         .++..+-.+ +... -+.+|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~~-~~~~~~~~~l-Ga~---------~~i~~~~~~~~~~~-~~g~D  217 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTAS-KRNHAFLKAL-GAE---------QCINYHEEDFLLAI-STPVD  217 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEEC-HHHHHHHHHH-TCS---------EEEETTTSCHHHHC-CSCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEec-cchHHHHHHc-CCC---------EEEeCCCcchhhhh-ccCCC
Confidence            4568999997  344667778888766 48888875 4447777763 210         122111111 2222 25799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+-...     +        +.+.. ..+.|+++|+++.-
T Consensus       218 ~v~d~~g-----~--------~~~~~-~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          218 AVIDLVG-----G--------DVGIQ-SIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEESSC-----H--------HHHHH-HGGGEEEEEEEEEC
T ss_pred             EEEECCC-----c--------HHHHH-HHHhccCCCEEEEe
Confidence            9885431     1        22355 57899999998864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.98  E-value=0.38  Score=41.43  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CCCeEEEEecCch-H-HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|+|+- + ++..|++. ++.+++.+|-|.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            3579999999853 3 34555554 688999999886

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.68  E-value=2.2  Score=36.14  Aligned_cols=102  Identities=17%  Similarity=0.267  Sum_probs=61.8

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----c-cCCCCC------------CCeEEEE
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD------------PRLELVI  162 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~~------------~rv~~~~  162 (251)
                      -++|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+++.+..     . .+....            .++++. 
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-   91 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT-G-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   91 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-
Confidence            3689999998643  45556654 3 4899999999988876543211     0 000000            134332 


Q ss_pred             cchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       163 ~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .|..+.+    ...|+||...+...       -...++++. +.+.++|+.+++.++
T Consensus        92 ~~~~~~~----~~aD~Vi~avp~~~-------~~~~~v~~~-l~~~~~~~~iv~s~t  136 (302)
T 1f0y_A           92 TDAASVV----HSTDLVVEAIVENL-------KVKNELFKR-LDKFAAEHTIFASNT  136 (302)
T ss_dssp             SCHHHHT----TSCSEEEECCCSCH-------HHHHHHHHH-HTTTSCTTCEEEECC
T ss_pred             cCHHHhh----cCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECC
Confidence            4433333    46899999875321       012467787 788888888776554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.43  E-value=2.7  Score=31.29  Aligned_cols=66  Identities=26%  Similarity=0.310  Sum_probs=40.8

Q ss_pred             CCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE-EEcchHHHHhcCCCceeE
Q 025534          103 PKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESRKESYDV  178 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~-~~~D~~~~l~~~~~~fD~  178 (251)
                      +++|++||+|  .++..+++.   .+. +|++++.+++-.+...+.+.          .++ ...|..+.+.    .+|+
T Consensus        21 ~~~v~iiG~G--~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~----------~~~~~~~~~~~~~~----~~Di   83 (144)
T 3oj0_A           21 GNKILLVGNG--MLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE----------YEYVLINDIDSLIK----NNDV   83 (144)
T ss_dssp             CCEEEEECCS--HHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT----------CEEEECSCHHHHHH----TCSE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC----------CceEeecCHHHHhc----CCCE
Confidence            7899999985  444444432   343 59999999987664333222          122 3345555543    5899


Q ss_pred             EEEcCCC
Q 025534          179 IIGDLAD  185 (251)
Q Consensus       179 Ii~D~~~  185 (251)
                      |+...+.
T Consensus        84 vi~at~~   90 (144)
T 3oj0_A           84 IITATSS   90 (144)
T ss_dssp             EEECSCC
T ss_pred             EEEeCCC
Confidence            9987654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.42  E-value=1.8  Score=37.10  Aligned_cols=78  Identities=22%  Similarity=0.364  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      .++.||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...+   ..+++.++..|..+.      +.  
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~-G-~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   81 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQ-G-CKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADEV   81 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987664   45555554 3 589999999987776665544221   124788888886432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       ..-++.|++|.++-
T Consensus        82 ~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           82 EARFGPVSILCNNAG   96 (319)
T ss_dssp             HHHTCCEEEEEECCC
T ss_pred             HHhCCCCCEEEECCC
Confidence             12357899999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.40  E-value=2.3  Score=34.58  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.++||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++  
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   76 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASK-G-ATVVGTATSQASAEKFENSMKEK-----GFKARGLVLNISDIESIQNFFAEI   76 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            45789999987663   45566654 3 58999999998777665544322     35788888886432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +..++.|++|.++.
T Consensus        77 ~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           77 KAENLAIDILVNNAG   91 (247)
T ss_dssp             HHTTCCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             22357899999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.29  E-value=5.3  Score=34.70  Aligned_cols=107  Identities=13%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHH----HHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEF----CKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~----a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~  175 (251)
                      .+.+|.+||+|.=+  ++..++...-..+++.+|++++.++-    .+.-++..     ..++++..+|... +    ..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-----~~~v~i~~~~~~a-~----~~   73 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-----PQPVKTSYGTYED-C----KD   73 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-----SSCCEEEEECGGG-G----TT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-----cCCeEEEeCcHHH-h----CC
Confidence            46789999986422  33344444323589999999986654    12222321     1346666666322 1    46


Q ss_pred             eeEEEEcCCCCCCCCc-ccCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          176 YDVIIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p-~~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .|+|++-...|...+. ...|+  +    .+..+. +.+ ..|++++++-++
T Consensus        74 aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~-I~~-~~p~a~vlvvtN  123 (326)
T 3pqe_A           74 ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSE-VMA-SGFDGIFLVATN  123 (326)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH-HHH-TTCCSEEEECSS
T ss_pred             CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHH-HHH-hcCCeEEEEcCC
Confidence            8999987654431111 01111  1    233333 233 579998876544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.28  E-value=3.4  Score=37.66  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCC-Cce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~-~~f  176 (251)
                      ...++|+++|+|.-+  ..+++. ....+|..+|.|++-.+.+.+.+         ++..+++||+.+  .|.+.+ +..
T Consensus       233 ~~~~~v~I~GgG~ig--~~lA~~L~~~~~v~iIE~d~~r~~~la~~l---------~~~~Vi~GD~td~~~L~ee~i~~~  301 (461)
T 4g65_A          233 KPYRRIMIVGGGNIG--ASLAKRLEQTYSVKLIERNLQRAEKLSEEL---------ENTIVFCGDAADQELLTEENIDQV  301 (461)
T ss_dssp             SCCCEEEEECCSHHH--HHHHHHHTTTSEEEEEESCHHHHHHHHHHC---------TTSEEEESCTTCHHHHHHTTGGGC
T ss_pred             ccccEEEEEcchHHH--HHHHHHhhhcCceEEEecCHHHHHHHHHHC---------CCceEEeccccchhhHhhcCchhh
Confidence            345899999987544  222221 12258999999999888766543         467899999976  455444 789


Q ss_pred             eEEEEcCC
Q 025534          177 DVIIGDLA  184 (251)
Q Consensus       177 D~Ii~D~~  184 (251)
                      |+++.-..
T Consensus       302 D~~ia~T~  309 (461)
T 4g65_A          302 DVFIALTN  309 (461)
T ss_dssp             SEEEECCS
T ss_pred             cEEEEccc
Confidence            99998643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.14  E-value=1.2  Score=38.16  Aligned_cols=96  Identities=15%  Similarity=0.278  Sum_probs=60.5

Q ss_pred             CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .-++|-+||+|.  +.++..++ . + -+|+++|.+++.++.+++.+.  ..  .-.++++. .|..+ +    ...|+|
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a-G-~~V~v~d~~~~~~~~~~~~l~--~~--~~~~i~~~-~~~~~-~----~~aDlV   77 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S-K-HEVVLQDVSEKALEAAREQIP--EE--LLSKIEFT-TTLEK-V----KDCDIV   77 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T-T-SEEEEECSCHHHHHHHHHHSC--GG--GGGGEEEE-SSCTT-G----GGCSEE
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c-C-CEEEEEECCHHHHHHHHHHHH--HH--HhCCeEEe-CCHHH-H----cCCCEE
Confidence            357899999995  34566666 4 4 489999999999998877621  00  00134432 33322 2    458999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |...++..       -....+|.. +...  |+.+++.|+.
T Consensus        78 ieavpe~~-------~vk~~l~~~-l~~~--~~~IlasntS  108 (293)
T 1zej_A           78 MEAVFEDL-------NTKVEVLRE-VERL--TNAPLCSNTS  108 (293)
T ss_dssp             EECCCSCH-------HHHHHHHHH-HHTT--CCSCEEECCS
T ss_pred             EEcCcCCH-------HHHHHHHHH-HhcC--CCCEEEEECC
Confidence            99877432       112456676 5554  8888877764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.13  E-value=1.6  Score=36.76  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=62.9

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cC-CCCC-------CCeEEEEcchH
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KE-AFSD-------PRLELVINDAR  166 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~-~~~~-------~rv~~~~~D~~  166 (251)
                      .++|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+++.+...      .. ....       .+++. ..|..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH-G-FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            3689999998533  44555554 4 48999999999988877653110      00 0000       12232 34444


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +.+    ...|+||...+...       -...++++. +...++|+.+++.++.
T Consensus        81 ~~~----~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~il~s~tS  122 (283)
T 4e12_A           81 QAV----KDADLVIEAVPESL-------DLKRDIYTK-LGELAPAKTIFATNSS  122 (283)
T ss_dssp             HHT----TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             HHh----ccCCEEEEeccCcH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            333    46899999876321       123567788 6888999888876653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.13  E-value=1.6  Score=35.98  Aligned_cols=77  Identities=23%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             CCCeEEEEec-CchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc
Q 025534          102 NPKTIFIMGG-GEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (251)
Q Consensus       102 ~~~~VL~iG~-G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~  171 (251)
                      ++++||+.|+ |.|.   +++.+++. + .+|++++.+++-.+...+.+...    ...++.++..|..+.      ++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLE-G-ADVVISDYHERRLGETRDQLADL----GLGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHC-C-CEEEEecCCHHHHHHHHHHHHhc----CCCceEEEEeCCCCHHHHHHHHHH
Confidence            5678999998 5443   45666665 3 58999999998777666554322    235789999887542      211


Q ss_pred             ---CCCceeEEEEcCC
Q 025534          172 ---RKESYDVIIGDLA  184 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~  184 (251)
                         .-++.|++|.++-
T Consensus        95 ~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCcEEEECCC
Confidence               1247899999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=89.07  E-value=1.3  Score=37.26  Aligned_cols=90  Identities=22%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+|.+||+|.=+  ++..+.+.....+|+++|.+++.++.+++. ..         ......|..+.+    +..|+|+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~---------~~~~~~~~~~~~----~~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GI---------VDEATADFKVFA----ALADVII   71 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TS---------CSEEESCTTTTG----GGCSEEE
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CC---------cccccCCHHHhh----cCCCEEE
Confidence            3589999998633  445555542125899999999888766552 11         001223322222    3689999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHccc-CCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~-L~pgG~l~  216 (251)
                      +..+.+.         ..+.++. +... |+++.+++
T Consensus        72 lavp~~~---------~~~v~~~-l~~~~l~~~~ivi   98 (290)
T 3b1f_A           72 LAVPIKK---------TIDFIKI-LADLDLKEDVIIT   98 (290)
T ss_dssp             ECSCHHH---------HHHHHHH-HHTSCCCTTCEEE
T ss_pred             EcCCHHH---------HHHHHHH-HHhcCCCCCCEEE
Confidence            8865211         2566777 6777 88766555

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.96  E-value=0.87  Score=41.94  Aligned_cols=102  Identities=19%  Similarity=0.311  Sum_probs=63.8

Q ss_pred             CCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCCCCC------------CCeEEEEcchHH
Q 025534          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSD------------PRLELVINDARA  167 (251)
Q Consensus       103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~------------~rv~~~~~D~~~  167 (251)
                      .++|.+||+|.  ++++..+++. + .+|+++|.+++.++.+++..... ......            .+++.. .|.. 
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-   80 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH-G-HQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIH-   80 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGG-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHH-
Confidence            46899999986  3455666664 3 48999999999999887643210 000001            133332 3322 


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      -+    ...|+||...+...       -...+++++ +.+.++|+.+++.|+.
T Consensus        81 ~~----~~aDlVIeAVpe~~-------~vk~~v~~~-l~~~~~~~~IlasntS  121 (483)
T 3mog_A           81 AL----AAADLVIEAASERL-------EVKKALFAQ-LAEVCPPQTLLTTNTS  121 (483)
T ss_dssp             GG----GGCSEEEECCCCCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             Hh----cCCCEEEEcCCCcH-------HHHHHHHHH-HHHhhccCcEEEecCC
Confidence            12    46899999875321       123577888 7888999998887764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=88.93  E-value=5.1  Score=36.38  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=59.1

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCC-------CCCCeEEEEcchHHHHhcCC
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK  173 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~-------~~~rv~~~~~D~~~~l~~~~  173 (251)
                      .+|.+||+|.=+  ++..+++.....+|+++|++++.++..++.- +.....+       ...++++ ..|..+.+    
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~----   80 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAI----   80 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHH----
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHH----
Confidence            589999998544  4555665521258999999999888765421 1000000       0012332 34444444    


Q ss_pred             CceeEEEEcCCCCCCCCc-----ccCC-ccHHHHHHHHcccCCCCcEEEE
Q 025534          174 ESYDVIIGDLADPIEGGP-----CYKL-YTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p-----~~~l-~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +..|+|++..+.|.....     ...+ +..+..+. +.+.|++|.+++.
T Consensus        81 ~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~  129 (467)
T 2q3e_A           81 KEADLVFISVNTPTKTYGMGKGRAADLKYIEACARR-IVQNSNGYKIVTE  129 (467)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHTCCSEEEEEE
T ss_pred             hcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHH-HHhhCCCCCEEEE
Confidence            257999998765432100     0001 12455666 5778888666543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=88.91  E-value=1.3  Score=40.15  Aligned_cols=104  Identities=14%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE----cch------HHH
Q 025534          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDA------RAE  168 (251)
Q Consensus       101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~----~D~------~~~  168 (251)
                      .++.+||++|+  |.|.++..+++..+ .++++++.+++-.+.+++.-...--...++.+.+..    .|.      .+.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~  305 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKR  305 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHH
Confidence            34678999997  34556777787765 588888999999999987411000000111110000    011      122


Q ss_pred             Hhc-C-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          169 LES-R-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       169 l~~-~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.+ + +..+|+|+-..      +       .+.+.. ..+.|+++|.++.-.
T Consensus       306 i~~~t~g~g~Dvvid~~------G-------~~~~~~-~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          306 IRELTGGEDIDIVFEHP------G-------RETFGA-SVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHTSCCEEEEEECS------C-------HHHHHH-HHHHEEEEEEEEESC
T ss_pred             HHHHhCCCCCcEEEEcC------C-------chhHHH-HHHHhhCCcEEEEEe
Confidence            222 2 35899988542      1       134566 577899999988643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.67  E-value=6.3  Score=32.29  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             CCCeEEEEecCch--H---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh
Q 025534          102 NPKTIFIMGGGEG--S---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G--~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~  170 (251)
                      +.++||+.|++++  .   +++.+++. + .+|+.++.++...+.+++.....    ...++.++..|..+      +++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEA-G-ARLIFTYAGERLEKSVHELAGTL----DRNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHHHHHTS----SSCCCEEEECCCSSSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC-C-CEEEEecCchHHHHHHHHHHHhc----CCCCceEEeCCCCCHHHHHHHHH
Confidence            5688999998732  2   45666664 4 58999998876655555443322    12478888887643      221


Q ss_pred             c---CCCceeEEEEcCC
Q 025534          171 S---RKESYDVIIGDLA  184 (251)
Q Consensus       171 ~---~~~~fD~Ii~D~~  184 (251)
                      .   .-++.|+++.++.
T Consensus        80 ~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCeeEEEEccc
Confidence            1   1247899999874

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=88.65  E-value=1.6  Score=35.72  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     .+++.++..|..+.      +.. 
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALARE-G-AAVVVADINAEAAEAVAKQIVAD-----GGTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56789999987663   45555554 3 58999999998877665554322     35788888887542      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++.
T Consensus        81 ~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=88.55  E-value=0.64  Score=40.84  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=57.3

Q ss_pred             CCCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      +..++|.+||+|.  +.++..+.+. + .+|+++|.+++.++.+++.           .++ ...|..+.+....+..|+
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~-G-~~V~~~dr~~~~~~~a~~~-----------G~~-~~~~~~e~~~~a~~~aDl   71 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAA-N-HSVFGYNRSRSGAKSAVDE-----------GFD-VSADLEATLQRAAAEDAL   71 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHT-----------TCC-EESCHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHc-----------CCe-eeCCHHHHHHhcccCCCE
Confidence            4457899999984  3455666554 3 5899999999988877653           111 134555555321124699


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++..+..         ...+.++. +... +|+. +++..+
T Consensus        72 VilavP~~---------~~~~vl~~-l~~~-~~~~-iv~Dv~  101 (341)
T 3ktd_A           72 IVLAVPMT---------AIDSLLDA-VHTH-APNN-GFTDVV  101 (341)
T ss_dssp             EEECSCHH---------HHHHHHHH-HHHH-CTTC-CEEECC
T ss_pred             EEEeCCHH---------HHHHHHHH-HHcc-CCCC-EEEEcC
Confidence            99986521         13456666 5554 6654 444543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=88.54  E-value=2.1  Score=37.02  Aligned_cols=75  Identities=29%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             CCCeEEEEecCchHHHHH----HHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025534          102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~----l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~  175 (251)
                      +.++||+.|+. |.++..    |++..+..+|++++.++.-.+..++.+.       .++++++.+|..+.  +...-+.
T Consensus        20 ~~k~vlVTGat-G~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           20 DNQTILITGGT-GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-------DPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-------CTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhc
Confidence            46789999875 554444    4443233489999999876554443322       35799999998653  2222246


Q ss_pred             eeEEEEcCC
Q 025534          176 YDVIIGDLA  184 (251)
Q Consensus       176 fD~Ii~D~~  184 (251)
                      .|+||..+.
T Consensus        92 ~D~Vih~Aa  100 (344)
T 2gn4_A           92 VDICIHAAA  100 (344)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999875

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.51  E-value=0.26  Score=43.49  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             cchhHHHHHHHhHhh--cCCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534           84 DEFIYHESLVHPALL--HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus        84 ~~~~y~e~l~~~~~~--~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      +..+|.+.+..+...  ......+||++|+|+-+  ++..|+. .++.+++.+|-|.
T Consensus        15 ~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~-~Gvg~itlvD~d~   70 (346)
T 1y8q_A           15 EAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLIL-AGVKGLTMLDHEQ   70 (346)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             HHHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCC
Confidence            345788766432211  11246899999997432  3444554 4688999998764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.44  E-value=6.4  Score=34.19  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ...+.+|.++|+|.=+  ++..++...-..++..+|++++.++--..-+.... .+. +++++..+|...+     ...|
T Consensus         6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~~-~~~~i~~~~~~a~-----~~aD   78 (326)
T 3vku_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-PFT-SPKKIYSAEYSDA-----KDAD   78 (326)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS-CCCEEEECCGGGG-----TTCS
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-hhc-CCcEEEECcHHHh-----cCCC
Confidence            3466899999986422  33344444333589999999886663222111100 011 3566666653321     4689


Q ss_pred             EEEEcCCCCCCCCc-ccCCcc------HHHHHHHHcccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGP-CYKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p-~~~l~~------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|++-+..|...+. ...|+.      .+..+. +.+ ..|++++++-++
T Consensus        79 iVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~-~~p~a~ilvvtN  126 (326)
T 3vku_A           79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDP-IVD-SGFNGIFLVAAN  126 (326)
T ss_dssp             EEEECCCCC----------------CHHHHHHH-HHT-TTCCSEEEECSS
T ss_pred             EEEECCCCCCCCCchHHHHHHHHHHHHHHHHHH-HHh-cCCceEEEEccC
Confidence            99987643321111 112221      345555 344 579998876543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.42  E-value=1.1  Score=36.18  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe-EEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~~~~~D~~~~l~~~~~~fD  177 (251)
                      .+++||+.|+.+|.   +++.|++. + .+|++++.++.-.+...+           .++ +++.+|..+.+.+.-+..|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~-G-~~V~~~~R~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK-G-HEPVAMVRNEEQGPELRE-----------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHH-----------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHh-----------CCCceEEEcccHHHHHHHHcCCC
Confidence            56889999975432   33444443 3 589999999875543322           357 8888887622222225799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +||..+.
T Consensus        87 ~vi~~ag   93 (236)
T 3e8x_A           87 AVVFAAG   93 (236)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998875

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=88.41  E-value=2.2  Score=34.36  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             CeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhcCCC
Q 025534          104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESRKE  174 (251)
Q Consensus       104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~~~~  174 (251)
                      ++||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+        ..++.++..|..+      .+....+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~   71 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAE-G-KATYLTGRSESKLSTVTNCL--------SNNVGYRARDLASHQEVEQLFEQLDS   71 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHHTC--------SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred             CEEEEecCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHH--------hhccCeEeecCCCHHHHHHHHHHHhh
Confidence            468999987664   44555554 3 57999999998877665543        2456777767543      3333446


Q ss_pred             ceeEEEEcCC
Q 025534          175 SYDVIIGDLA  184 (251)
Q Consensus       175 ~fD~Ii~D~~  184 (251)
                      .+|+++.++.
T Consensus        72 ~~d~lv~~Ag   81 (230)
T 3guy_A           72 IPSTVVHSAG   81 (230)
T ss_dssp             CCSEEEECCC
T ss_pred             cCCEEEEeCC
Confidence            6799998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.19  E-value=2.4  Score=36.40  Aligned_cols=99  Identities=17%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCC-CCCCeEEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAF-SDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ...+|.+||+|.-+  ++..+++. + .+|+.+ .+++.++..++. +....... ...+++. ..|... +    +.+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~-G-~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~~-~----~~~D   88 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA-G-HEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDPSA-V----QGAD   88 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT-T-CEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCGGG-G----TTCS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC-C-CeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCHHH-c----CCCC
Confidence            45789999998644  44555553 3 489999 999888877653 21110000 0011221 233221 1    4799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|++-.+..         ...+.++. ++..++++.+++...
T Consensus        89 ~vilavk~~---------~~~~~l~~-l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           89 LVLFCVKST---------DTQSAALA-MKPALAKSALVLSLQ  120 (318)
T ss_dssp             EEEECCCGG---------GHHHHHHH-HTTTSCTTCEEEEEC
T ss_pred             EEEEEcccc---------cHHHHHHH-HHHhcCCCCEEEEeC
Confidence            999986421         24678888 799999988766443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.07  E-value=4.1  Score=32.15  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=43.2

Q ss_pred             eEEEEecCchHHH----HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          105 TIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       105 ~VL~iG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +||+.|+. |.++    ..|++. + .+|+++..++.-.+..           ..++++++.+|..+.-...-+..|+||
T Consensus         2 kilVtGat-G~iG~~l~~~L~~~-g-~~V~~~~R~~~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~d~vi   67 (224)
T 3h2s_A            2 KIAVLGAT-GRAGSAIVAEARRR-G-HEVLAVVRDPQKAADR-----------LGATVATLVKEPLVLTEADLDSVDAVV   67 (224)
T ss_dssp             EEEEETTT-SHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHH-----------TCTTSEEEECCGGGCCHHHHTTCSEEE
T ss_pred             EEEEEcCC-CHHHHHHHHHHHHC-C-CEEEEEEecccccccc-----------cCCCceEEecccccccHhhcccCCEEE
Confidence            68999975 4443    444443 3 5899999998654422           125788999997653211114689999


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      ..+..
T Consensus        68 ~~ag~   72 (224)
T 3h2s_A           68 DALSV   72 (224)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            88754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.88  E-value=7.5  Score=31.94  Aligned_cols=76  Identities=20%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|..++.+++-++...+.+...     ..++.++..|..+.      ++  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQ-G-ADLVLAARTVERLEDVAKQVTDT-----GRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC-c-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            56889999987764   45566654 3 58999999988777665544322     35788888886542      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|++|.++.
T Consensus        83 ~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           83 MKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHTSCCSEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence             12357999999873

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=87.71  E-value=4.1  Score=34.07  Aligned_cols=72  Identities=25%  Similarity=0.311  Sum_probs=49.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------HhcC
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESR  172 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~~  172 (251)
                      ++++||+.|+++|.   +++.+++. + .+|.+++.++.-.+.+.+.+        ..++.++..|..+.      ++..
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~d~~~v~~~~~~~   84 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARR-G-ATVIMAVRDTRKGEAAARTM--------AGQVEVRELDLQDLSSVRRFADGV   84 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHTTS--------SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHh--------cCCeeEEEcCCCCHHHHHHHHHhc
Confidence            56889999987664   44555554 3 58999999988777665433        24788888886532      2222


Q ss_pred             CCceeEEEEcCC
Q 025534          173 KESYDVIIGDLA  184 (251)
Q Consensus       173 ~~~fD~Ii~D~~  184 (251)
                       ++.|++|.++-
T Consensus        85 -~~iD~lv~nAg   95 (291)
T 3rd5_A           85 -SGADVLINNAG   95 (291)
T ss_dssp             -CCEEEEEECCC
T ss_pred             -CCCCEEEECCc
Confidence             57899999874

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=87.70  E-value=5.6  Score=33.44  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECCh--HHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDE--EVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~--~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~  170 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|..++.+.  ...+...+.....     ..++.++..|..+.      ++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~-G-~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYARE-G-ADVAINYLPAEEEDAQQVKALIEEC-----GRKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEECCGGGHHHHHHHHHHHHHT-----TCCEEECCCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCcchhHHHHHHHHHHHc-----CCcEEEEEecCCCHHHHHHHHH
Confidence            46789999987664   44555554 3 5899888873  3333333322221     24677877776432      21


Q ss_pred             c---CCCceeEEEEcCC
Q 025534          171 S---RKESYDVIIGDLA  184 (251)
Q Consensus       171 ~---~~~~fD~Ii~D~~  184 (251)
                      .   .-++.|+++.++-
T Consensus       121 ~~~~~~g~iD~lv~nAg  137 (294)
T 3r3s_A          121 KAREALGGLDILALVAG  137 (294)
T ss_dssp             HHHHHHTCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            1   1257899999875

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=87.55  E-value=2.2  Score=35.14  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|..++.+++-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKA-G-ASVVVTDLKSEGAEAVAAAIRQA-----GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            56789999987664   45555555 3 58999999998777665554422     35788888886542      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        84 ~~~~g~id~lv~nAg   98 (256)
T 3gaf_A           84 LDQFGKITVLVNNAG   98 (256)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247999999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.54  E-value=4.1  Score=35.73  Aligned_cols=97  Identities=19%  Similarity=0.154  Sum_probs=61.5

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchh----cccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV----VNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~----~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      ..+|.+||+|.-+  ++..+++. + .+|+.++.+++.++..++.-.    +++.. ..+++++ ..|..+.+    +..
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~-G-~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~-l~~~i~~-t~d~~ea~----~~a  100 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK-G-QKVRLWSYESDHVDEMQAEGVNNRYLPNYP-FPETLKA-YCDLKASL----EGV  100 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT-T-CCEEEECSCHHHHHHHHHHSSBTTTBTTCC-CCTTEEE-ESCHHHHH----TTC
T ss_pred             CCeEEEECccHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHcCCCcccCCCCc-cCCCeEE-ECCHHHHH----hcC
Confidence            4689999998654  34455543 3 479999999998887665311    11111 1234443 35655544    358


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      |+|++..+..         ..++.++. ++..|+|+-+++.
T Consensus       101 DvVilaVp~~---------~~~~vl~~-i~~~l~~~~ivvs  131 (356)
T 3k96_A          101 TDILIVVPSF---------AFHEVITR-MKPLIDAKTRIAW  131 (356)
T ss_dssp             CEEEECCCHH---------HHHHHHHH-HGGGCCTTCEEEE
T ss_pred             CEEEECCCHH---------HHHHHHHH-HHHhcCCCCEEEE
Confidence            9999886421         34677888 7888998876654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=87.53  E-value=6.7  Score=32.71  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++...+.+...     ..++..+..|..+.      +++ 
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~-G-a~Vv~~~~~~~~~~~~~~~i~~~-----g~~~~~~~~Dvt~~~~v~~~~~~~   78 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALN-D-SIVVAVELLEDRLNQIVQELRGM-----GKEVLGVKADVSKKKDVEEFVRRT   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56888999987775   45555554 4 68999999998887766655432     25678888876432      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        79 ~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           79 FETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence              2267999999874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=87.41  E-value=2.7  Score=38.14  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=52.3

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|.++|.|.=+. ....++..+ .+|+++|.++.-...+...           .+++  .+..+.+    ...|+|
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~G-a~Viv~D~~p~~a~~A~~~-----------G~~~--~sL~eal----~~ADVV  270 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFG-ARVVVTEVDPINALQAAME-----------GYQV--LLVEDVV----EEAHIF  270 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-----------TCEE--CCHHHHT----TTCSEE
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCC-CEEEEECCChhhhHHHHHh-----------CCee--cCHHHHH----hhCCEE
Confidence            3578999999986432 223333345 5899999999665544431           1121  2444544    368999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +.....       ..+.+.+     ..+.+|+|.++ +|.+.+
T Consensus       271 ilt~gt-------~~iI~~e-----~l~~MK~gAIV-INvgRg  300 (436)
T 3h9u_A          271 VTTTGN-------DDIITSE-----HFPRMRDDAIV-CNIGHF  300 (436)
T ss_dssp             EECSSC-------SCSBCTT-----TGGGCCTTEEE-EECSSS
T ss_pred             EECCCC-------cCccCHH-----HHhhcCCCcEE-EEeCCC
Confidence            974321       1233332     23567877655 577644

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.36  E-value=2.9  Score=34.94  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      .++.||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+...     ..++.++..|..+.      ++. 
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAAR-G-IAVYGCARDAKNVSAAVDGLRAA-----GHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987664   45555554 3 58999999998777665544321     35788888886532      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        96 ~~~~g~id~lv~nAg  110 (279)
T 3sju_A           96 VERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHCSCCEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence              1247899999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=87.30  E-value=3.9  Score=33.88  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      ..++||+.|+++|.   +++.+++. + .+|++++.++.-.+...+.+...     ..++.++..|..+.      +.  
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~  102 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKL-K-SKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV  102 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEEcCHHHHHHHHHHHHhc-----CCeEEEEEeeCCCHHHHHHHHHHH
Confidence            45789999986553   34444544 3 58999999987766554433321     24788888886432      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+||.++.
T Consensus       103 ~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A          103 KAEIGDVSILVNNAG  117 (272)
T ss_dssp             HHHTCCCSEEEECCC
T ss_pred             HHHCCCCcEEEECCC
Confidence             11247999999875

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=87.20  E-value=5.5  Score=34.16  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=42.9

Q ss_pred             CCCeEEEEecCchH--HHHHHH-hcCCCcEE-EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          102 NPKTIFIMGGGEGS--TAREIL-RHKTVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~-~~~~~~~v-~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ++.+|.+||+|.=+  .+..+. +.++ .++ .++|.+++-.+.+.+.++          +.....|..+.+..  ...|
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~-~~~vav~d~~~~~~~~~a~~~g----------~~~~~~~~~~~l~~--~~~D   73 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQG-VKLVAACALDSNQLEWAKNELG----------VETTYTNYKDMIDT--ENID   73 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSS-EEEEEEECSCHHHHHHHHHTTC----------CSEEESCHHHHHTT--SCCS
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCC-cEEEEEecCCHHHHHHHHHHhC----------CCcccCCHHHHhcC--CCCC
Confidence            45689999998533  234444 3444 454 567999987765443321          11234677777642  4699


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +|++..+
T Consensus        74 ~V~i~tp   80 (346)
T 3cea_A           74 AIFIVAP   80 (346)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9998765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.17  E-value=5.7  Score=34.18  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             CCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHH-HHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+.+|.+||+|.-+.+  ..++...-..++..+|++++.++- +...-....  +...++++..++... +    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~--~~~~~~~v~~~~~~a-~----~~aDv   77 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP--YSPTTVRVKAGEYSD-C----HDADL   77 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGG--GSSSCCEEEECCGGG-G----TTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhh--hcCCCeEEEeCCHHH-h----CCCCE
Confidence            3568999999765543  333333323589999999865552 221101000  111345555544222 2    46899


Q ss_pred             EEEcCCCCCCCCcc-cC--Ccc----HHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPC-YK--LYT----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~--l~~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++-...|...+.. ..  ..+    .++.+. +.+. +|++++++-++
T Consensus        78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~a~viv~tN  124 (317)
T 3d0o_A           78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGE-VMAS-KFDGIFLVATN  124 (317)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHH-HHHT-TCCSEEEECSS
T ss_pred             EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHH-HHHh-CCCcEEEEecC
Confidence            99987644311110 00  111    223333 2333 89999887443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.16  E-value=2.1  Score=35.33  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      +.. 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~  100 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSL-G-ARVVLTARDVEKLRAVEREIVAA-----GGEAESHACDLSHSDAIAAFATGV  100 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHH
Confidence            45789999987653   34555554 3 58999999998877666554422     35788888886432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++.
T Consensus       101 ~~~~g~id~lv~~Ag  115 (262)
T 3rkr_A          101 LAAHGRCDVLVNNAG  115 (262)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence              1247999999875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.11  E-value=2  Score=37.70  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=40.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~~~fD~  178 (251)
                      +..|||+||+|  .+++.+++. ....+|+.+|++.+-++.+++..            +.+..|+.+  -+...-+..|+
T Consensus        15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~d~~d~~~l~~~~~~~Dv   80 (365)
T 3abi_A           15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFA------------TPLKVDASNFDKLVEVMKEFEL   80 (365)
T ss_dssp             -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTS------------EEEECCTTCHHHHHHHHTTCSE
T ss_pred             CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccC------------CcEEEecCCHHHHHHHHhCCCE
Confidence            45689999984  333333321 12258999999998887766432            223333321  22222246899


Q ss_pred             EEEcCC
Q 025534          179 IIGDLA  184 (251)
Q Consensus       179 Ii~D~~  184 (251)
                      |++-.+
T Consensus        81 Vi~~~p   86 (365)
T 3abi_A           81 VIGALP   86 (365)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            998654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.04  E-value=2.8  Score=35.52  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=52.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +++.||+.|+++|.   +++.+++. + .+|.+++.+++-++.+.+.+...     ..++.++..|..+.      +.. 
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARR-G-ARLVLSDVDQPALEQAVNGLRGQ-----GFDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            56789999988663   45555554 3 58999999998887766555422     35788888886542      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus       103 ~~~~g~id~lvnnAg  117 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAG  117 (301)
T ss_dssp             HHHHSSCSEEEECCC
T ss_pred             HHhCCCCCEEEECCC
Confidence              1247999999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=86.99  E-value=1.8  Score=38.02  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=25.5

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      ...+||++|+|+-+  ++..|++ .++.+++.||-|.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~-aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIA-WGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCE
Confidence            36899999998543  4555555 4789999999875

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=86.98  E-value=8.4  Score=31.94  Aligned_cols=79  Identities=13%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..++||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...+  ....++.++..|..+.      ++. 
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAA-G-ASVMIVGRNPDKLAGAVQELEALG--ANGGAIRYEPTDITNEDETARAVDAV   85 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTTC--CSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999987664   45555554 3 589999999987776655443221  0123788888886542      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        86 ~~~~g~id~lv~nAg  100 (281)
T 3svt_A           86 TAWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247899999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=86.80  E-value=0.71  Score=39.69  Aligned_cols=90  Identities=17%  Similarity=0.327  Sum_probs=54.9

Q ss_pred             eEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-ch-HHHHhc-CCCceeEE
Q 025534          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA-RAELES-RKESYDVI  179 (251)
Q Consensus       105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~-~~~l~~-~~~~fD~I  179 (251)
                      +||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..      +   .++.. |. .+.++. ....+|+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga------~---~v~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQL-GA------S---EVISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHH-TC------S---EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CC------c---EEEECCCchHHHHHHhhcCCccEE
Confidence            8999997  44556677777655 4799999998888888763 21      0   11111 10 011111 23469998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-...     .        +.+.. ..+.|+++|+++.-.
T Consensus       222 id~~g-----~--------~~~~~-~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          222 VDPVG-----G--------KQLAS-LLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EESCC-----T--------HHHHH-HHTTEEEEEEEEECC
T ss_pred             EECCc-----H--------HHHHH-HHHhhcCCCEEEEEe
Confidence            85431     1        23556 578999999988643

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.72  E-value=2.7  Score=34.54  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..+.+|+.|+++|.   +++.+++. + .+|..++.+++-.+...+.+.....  ...++.++..|..+.      +.. 
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATD-G-YRVVLIARSKQNLEKVHDEIMRSNK--HVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHH-T-CEEEEEESCHHHHHHHHHHHHHHCT--TSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHhcc--ccCcceEEeccCCCHHHHHHHHHHH
Confidence            56789999987664   45566665 3 5899999999877766554432110  125678888876542      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        82 ~~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           82 HQKYGAVDILVNAAA   96 (250)
T ss_dssp             HHHHCCEEEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence              1257999999875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=86.72  E-value=3.2  Score=34.40  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECC------------hHHHHHHHhchhcccCCCCCCCeEEEEcchH
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDID------------EEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid------------~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~  166 (251)
                      .++.||+.|+++|.   +++.+++. + .+|.+++.+            ++-++...+.+...     ..++.++..|..
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAAD-G-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-----GSRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-----TCCEEEEECCTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-CeEEEEecccccccccccccchHHHHHHHHHHHhc-----CCeEEEEeCCCC
Confidence            56789999987664   45555554 3 589999987            55555444433322     257888888864


Q ss_pred             HH------Hhc---CCCceeEEEEcCC
Q 025534          167 AE------LES---RKESYDVIIGDLA  184 (251)
Q Consensus       167 ~~------l~~---~~~~fD~Ii~D~~  184 (251)
                      +.      +..   .-++.|++|.++-
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            32      211   1247999999875

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=86.68  E-value=5.9  Score=36.19  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..+++|+++|+|.= ......++..+ .+|+++|+||.-...+...           .+++  .+..+.+    ...|+|
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafG-a~Viv~d~dp~~a~~A~~~-----------G~~v--v~LeElL----~~ADIV  306 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAG-ARVKVTEVDPICALQAAMD-----------GFEV--VTLDDAA----STADIV  306 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHT-----------TCEE--CCHHHHG----GGCSEE
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCC-CEEEEEeCCcchhhHHHhc-----------Ccee--ccHHHHH----hhCCEE
Confidence            46799999999862 22233334345 5899999999654333321           1222  2333444    368998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +....       ..++.+.+.++.     +|+|+++ +|.+..
T Consensus       307 v~atg-------t~~lI~~e~l~~-----MK~GAIL-INvGRg  336 (464)
T 3n58_A          307 VTTTG-------NKDVITIDHMRK-----MKDMCIV-GNIGHF  336 (464)
T ss_dssp             EECCS-------SSSSBCHHHHHH-----SCTTEEE-EECSSS
T ss_pred             EECCC-------CccccCHHHHhc-----CCCCeEE-EEcCCC
Confidence            87421       134666665554     6776655 477543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=86.65  E-value=0.52  Score=40.45  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=42.1

Q ss_pred             CceeEEEEcCCCCCCCCcc-----cCCccHH-HHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          174 ESYDVIIGDLADPIEGGPC-----YKLYTKS-FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~-----~~l~~~e-f~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      ++||+|++|...+.. +-.     .+.-... .... ..++|+|||.+++..-.    ...+....+...|++.|..+..
T Consensus       205 ~k~DvV~SDMApn~s-Gh~yqQC~DHarii~Lal~f-A~~vLkPGGtfV~Kvyg----gaDr~se~lv~~LaR~F~~Vr~  278 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYK-YHHYQQCEDHAIKLSMLTKK-ACLHLNPGGTCVSIGYG----YADRASESIIGAIARQFKFSRV  278 (320)
T ss_dssp             CCEEEEEEECCCCCC-SCHHHHHHHHHHHHHHTHHH-HGGGEEEEEEEEEEECC----CCSHHHHHHHHHHHTTEEEEEE
T ss_pred             CcCCEEEEcCCCCCC-CccccccchHHHHHHHHHHH-HHHhcCCCceEEEEEec----CCcccHHHHHHHHHHhcceeee
Confidence            679999999864432 110     0000000 2233 36899999999987621    1233557888999999987753

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=86.62  E-value=2.5  Score=34.75  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+.+.+.+...     ..++.++..|..+.      ++. 
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   77 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKE-G-ARVVITGRTKEKLEEAKLEIEQF-----PGQILTVQMDVRNTDDIQKMIEQI   77 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCCS-----TTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            45789999987664   45555554 3 58999999998877766554321     35788888886532      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        78 ~~~~g~id~lv~nAg   92 (257)
T 3imf_A           78 DEKFGRIDILINNAA   92 (257)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247899999875

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=86.57  E-value=3.2  Score=33.75  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=49.4

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~  171 (251)
                      .+.++||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+.        .++.++..|..+      .+++
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~   81 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKL-G-SKVIISGSNEEKLKSLGNALK--------DNYTIEVCNLANKEECSNLISK   81 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHC--------SSEEEEECCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHhc--------cCccEEEcCCCCHHHHHHHHHh
Confidence            456889999987664   44555554 3 589999999887766554331        367777777643      2222


Q ss_pred             CCCceeEEEEcCC
Q 025534          172 RKESYDVIIGDLA  184 (251)
Q Consensus       172 ~~~~fD~Ii~D~~  184 (251)
                       -.+.|+++.++.
T Consensus        82 -~~~id~li~~Ag   93 (249)
T 3f9i_A           82 -TSNLDILVCNAG   93 (249)
T ss_dssp             -CSCCSEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             257999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=86.38  E-value=0.61  Score=41.08  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=26.6

Q ss_pred             CCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChH
Q 025534          103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~  137 (251)
                      +|||++||+|.+++.  ..|.+..+..+|+.||-++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            689999999998864  44655544468999998753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.37  E-value=4.3  Score=33.75  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      +.  
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   93 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKE-G-LRVFVCARGEEGLRTTLKELREA-----GVEADGRTCDVRSVPEIEALVAAV   93 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHHH
Confidence            45789999987653   34455554 3 58999999987666544433221     24678888776432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|++|.++-
T Consensus        94 ~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           94 VERYGPVDVLVNNAG  108 (277)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence             11247999999875

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=86.27  E-value=8.9  Score=32.02  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      .++.||+.|+++|.   +++.+++. + .+|..++.+++-++...+.+..     ...++.++..|..+.      +++ 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAAD-G-VTVGALGRTRTEVEEVADEIVG-----AGGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHTT-----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHHHHHHHHHHH
Confidence            46789999987664   44555554 3 5899999999877766554432     135788888887542      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus       100 ~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A          100 VLKFGHLDIVVANAG  114 (283)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence              1247999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=86.25  E-value=3.6  Score=36.35  Aligned_cols=119  Identities=8%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+||+|+-+-|+++..++.+    .++.+.=+-..-...+.++..++  +...++++...     ++.....||+|++
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~--~~~~~~~~~~~-----~~~~~~~~~~v~~  106 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNG--IDESSVKFLDS-----TADYPQQPGVVLI  106 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTT--CCGGGSEEEET-----TSCCCSSCSEEEE
T ss_pred             CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcC--CCccceEeccc-----ccccccCCCEEEE
Confidence            3468999999999999888754    23455434434445566776553  22334665433     2234578999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      -.+...     .  .....+.. +...|++|+.+++-..      ......++.+.|.+.|..+
T Consensus       107 ~lpk~~-----~--~l~~~L~~-l~~~l~~~~~i~~~g~------~~~~~~~~~~~l~~~~~~~  156 (375)
T 4dcm_A          107 KVPKTL-----A--LLEQQLRA-LRKVVTSDTRIIAGAK------ARDIHTSTLELFEKVLGPT  156 (375)
T ss_dssp             ECCSCH-----H--HHHHHHHH-HHTTCCTTSEEEEEEE------GGGCCHHHHHHHHHHTCCE
T ss_pred             EcCCCH-----H--HHHHHHHH-HHhhCCCCCEEEEEec------ccchHHHHHHHHHhhcCcc
Confidence            876321     1  12345666 6889999998876431      1222345666666666543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=86.24  E-value=5.9  Score=34.04  Aligned_cols=105  Identities=25%  Similarity=0.301  Sum_probs=56.5

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +|.+||+|.=+.  +..+++.....+|+.+|++++.++.....+..... +. ...++...|. +-+    ...|+|++-
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~-~~~~i~~~d~-~~~----~~aDvViia   74 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT-RRANIYAGDY-ADL----KGSDVVIVA   74 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS-CCCEEEECCG-GGG----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc-CCcEEEeCCH-HHh----CCCCEEEEc
Confidence            689999976443  34444433234899999999877654432211000 01 2234444452 222    468999998


Q ss_pred             CCCCCCCCccc-C--Cc------cHHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPIEGGPCY-K--LY------TKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~~~~p~~-~--l~------~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+.+.  .|.. .  +.      -.+.++. +.+. .|++++++-++
T Consensus        75 v~~~~--~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~~~~~ii~~tN  117 (319)
T 1a5z_A           75 AGVPQ--KPGETRLQLLGRNARVMKEIARN-VSKY-APDSIVIVVTN  117 (319)
T ss_dssp             CCCCC--CSSCCHHHHHHHHHHHHHHHHHH-HHHH-CTTCEEEECSS
T ss_pred             cCCCC--CCCCCHHHHHHHHHHHHHHHHHH-HHhh-CCCeEEEEeCC
Confidence            77543  1210 0  10      1355555 4544 58998876443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.18  E-value=2.2  Score=35.35  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      .+++||+.|+++|.   +++.+++. + .+|..++.+++-.+.+.+.+...    ...++.++..|..+.      ++. 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARA-G-ANVAVAGRSTADIDACVADLDQL----GSGKVIGVQTDVSDRAQCDALAGRA   82 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT----SSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhh----CCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            56889999987664   45555554 3 58999999998877665544322    125788888887542      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        83 ~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           83 VEEFGGIDVVCANAG   97 (262)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence              1247999999875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=86.16  E-value=3.9  Score=33.29  Aligned_cols=76  Identities=14%  Similarity=0.307  Sum_probs=47.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.++||+.|+++|.   +++.+++. + .+|.+++.++.-.+...+.+...     ..+++++..|..+.      ++. 
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEA-G-ARVIIADLDEAMATKAVEDLRME-----GHDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            46789999886553   34445554 3 58999999987665444433221     24688888886542      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        ..++.|+||.++.
T Consensus        85 ~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           85 HEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1146899999874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=86.10  E-value=1.4  Score=37.35  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +++.||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...    ...++.++..|..+.      ++  
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dv~d~~~v~~~~~~~  113 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARA-G-ANVAVAARSPRELSSVTAELGEL----GAGNVIGVRLDVSDPGSCADAARTV  113 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESSGGGGHHHHHHHTTS----SSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhh----CCCcEEEEEEeCCCHHHHHHHHHHH
Confidence            56789999987664   45555554 4 58999999987766655544322    125788888887643      11  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|++|.++-
T Consensus       114 ~~~~g~iD~lvnnAg  128 (293)
T 3rih_A          114 VDAFGALDVVCANAG  128 (293)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             11247899999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=86.03  E-value=9.6  Score=33.12  Aligned_cols=110  Identities=16%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHhcCCCceeE
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD~  178 (251)
                      +..+|.+||+|.-+  ++..++...-..++..+|++++.++--..-+.... .+. ...+++ .+|..+     -...|+
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~-~~~-~~~~i~~~~d~~~-----~~~aDi   90 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS-LFL-KTPKIVSSKDYSV-----TANSKL   90 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG-GGC-SCCEEEECSSGGG-----GTTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh-hcc-CCCeEEEcCCHHH-----hCCCCE
Confidence            45799999997533  34555554333589999999876553221111000 011 122333 445322     256999


Q ss_pred             EEEcCCCCCCCCc-ccCCcc------HHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGP-CYKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p-~~~l~~------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++-.-.|...+. ...|+.      .++.+. +.+. .|++++++-++
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~~-~p~a~vlvvtN  137 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPN-VVKY-SPQCKLLIVSN  137 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH-HHHH-CTTCEEEECSS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence            9986543321111 112322      244455 4554 89999887554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=86.00  E-value=5.5  Score=32.66  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.++||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+        .+++.++..|..+.      ++  
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~   76 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVRE-G-ATVAIADIDIERARQAAAEI--------GPAAYAVQMDVTRQDSIDAAIAAT   76 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHh--------CCCceEEEeeCCCHHHHHHHHHHH
Confidence            56789999987663   45555554 3 58999999988766554432        24577777776432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++.
T Consensus        77 ~~~~g~id~lv~~Ag   91 (259)
T 4e6p_A           77 VEHAGGLDILVNNAA   91 (259)
T ss_dssp             HHHSSSCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             12247999999875

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.97  E-value=4  Score=33.57  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..++||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      +.. 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   78 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEE-G-TAIALLDMNREALEKAEASVREK-----GVEARSYVCDVTSEEAVIGTVDSV   78 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            45789999987664   44555554 3 58999999987766554443321     24678888886432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        79 ~~~~g~id~lv~nAg   93 (262)
T 1zem_A           79 VRDFGKIDFLFNNAG   93 (262)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence              1247899999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.88  E-value=11  Score=32.94  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      +..+|.+||+|.=+  ++..+++. + .+|+++|.+++.++.+.+.           .+. ...|..+.+... ++.|+|
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----------g~~-~~~s~~e~~~~a-~~~DvV   85 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKG-G-HECVVYDLNVNAVQALERE-----------GIA-GARSIEEFCAKL-VKPRVV   85 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTT-----------TCB-CCSSHHHHHHHS-CSSCEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHHC-----------CCE-EeCCHHHHHhcC-CCCCEE
Confidence            34689999998543  45555554 3 5899999999888766542           111 124556666432 457999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ++-.+.+         ...+.++. +...|++|.+++-
T Consensus        86 i~~vp~~---------~v~~vl~~-l~~~l~~g~iiId  113 (358)
T 4e21_A           86 WLMVPAA---------VVDSMLQR-MTPLLAANDIVID  113 (358)
T ss_dssp             EECSCGG---------GHHHHHHH-HGGGCCTTCEEEE
T ss_pred             EEeCCHH---------HHHHHHHH-HHhhCCCCCEEEe
Confidence            9986532         24567787 7888988776653

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=85.79  E-value=2.5  Score=41.02  Aligned_cols=102  Identities=17%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             CeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----------cCCCCCCCeEEEEcchHHHHh
Q 025534          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----------KEAFSDPRLELVINDARAELE  170 (251)
Q Consensus       104 ~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----------~~~~~~~rv~~~~~D~~~~l~  170 (251)
                      ++|-+||+|+-+.  +..++.. + ..|+.+|++++.++.+++.....           .......++++ ..|. +-+ 
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~a-G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l-  391 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARV-G-ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KEL-  391 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCG-GGG-
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-C-CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcH-HHH-
Confidence            6899999998654  4444443 3 58999999999998887654211           11011123322 2222 222 


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                         ...|+||-..+...       -.-++.|++ +.++++|+.+|+.|+.+
T Consensus       392 ---~~aDlVIEAV~E~l-------~iK~~vf~~-le~~~~~~aIlASNTSs  431 (742)
T 3zwc_A          392 ---STVDLVVEAVFEDM-------NLKKKVFAE-LSALCKPGAFLCTNTSA  431 (742)
T ss_dssp             ---GSCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCSS
T ss_pred             ---hhCCEEEEeccccH-------HHHHHHHHH-HhhcCCCCceEEecCCc
Confidence               35799998776421       124688999 79999999999998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.75  E-value=8.1  Score=34.66  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=59.1

Q ss_pred             eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCC--------CCCeEEEEcchHHHHhcCC
Q 025534          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFS--------DPRLELVINDARAELESRK  173 (251)
Q Consensus       105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~--------~~rv~~~~~D~~~~l~~~~  173 (251)
                      +|.+||+|.=+  ++..+++. + .+|+++|.+++.++..++. .+.....+.        ..++++ ..|..+.+.   
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G-~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~---   75 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-G-HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVL---   75 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHH---
T ss_pred             EEEEECCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhc---
Confidence            68999998543  44555554 3 4899999999998877652 111100000        123433 345444342   


Q ss_pred             CceeEEEEcCCCCCC-CCcccCCccHHHHHHHHcccCCC---CcEEEE
Q 025534          174 ESYDVIIGDLADPIE-GGPCYKLYTKSFYEFVVKPRLNP---EGIFVT  217 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~-~~p~~~l~~~ef~~~~~~~~L~p---gG~l~~  217 (251)
                       ..|+|++..+.|.. .+...--+..+.++. +.+.|++   +.+++.
T Consensus        76 -~aDvviiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~~~~~~iVV~  121 (436)
T 1mv8_A           76 -DSDVSFICVGTPSKKNGDLDLGYIETVCRE-IGFAIREKSERHTVVV  121 (436)
T ss_dssp             -TCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHHTTCCSCCEEEE
T ss_pred             -cCCEEEEEcCCCcccCCCcchHHHHHHHHH-HHHHhcccCCCcEEEE
Confidence             57999998865431 111111123566677 6778888   555553

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.72  E-value=3  Score=34.59  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEEC-ChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDI-DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEi-d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-  170 (251)
                      .+++||+.|+++|.   +++.+++. + .+|.+++. +++..+...+.+...     ..++.++..|..+.      ++ 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASM-G-LKVWINYRSNAEVADALKNELEEK-----GYKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESSCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHH
Confidence            56789999987664   45555554 3 58988888 566656555544322     35788888886432      21 


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        +..++.|++|.++-
T Consensus       101 ~~~~~g~id~li~nAg  116 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAG  116 (271)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHhcCCCCEEEECCC
Confidence              12257999999875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=85.60  E-value=4.8  Score=33.69  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.++||+.|+++|.   +++.+++. + .+|++++.+++-.+...+.+..........++.++..|..+.      +.. 
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLEL-G-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence            45789999986553   34445554 3 589999999876665544332110000135788888886532      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+||.++.
T Consensus        95 ~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           95 LDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1136999999875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=85.42  E-value=4.4  Score=33.10  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +.++||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+        ..++.++..|..+.      +.. 
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~   77 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKG-G-AKVVIVDRDKAGAERVAGEI--------GDAALAVAADISKEADVDAAVEAA   77 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHh--------CCceEEEEecCCCHHHHHHHHHHH
Confidence            56789999998664   45666664 3 58999999998777655432        24677888776432      211 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        78 ~~~~g~id~li~~Ag   92 (261)
T 3n74_A           78 LSKFGKVDILVNNAG   92 (261)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEECCc
Confidence              1247899999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.27  E-value=4.3  Score=31.87  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=42.1

Q ss_pred             eEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +||+.|+.++.   ++..|++. + .+|+++..++.-.+...            ++++++.+|..+.-...-+..|+||.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~-g-~~V~~~~R~~~~~~~~~------------~~~~~~~~D~~d~~~~~~~~~d~vi~   67 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR-G-HEVTAIVRNAGKITQTH------------KDINILQKDIFDLTLSDLSDQNVVVD   67 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCSHHHHHHC------------SSSEEEECCGGGCCHHHHTTCSEEEE
T ss_pred             eEEEEcCCchhHHHHHHHHHhC-C-CEEEEEEcCchhhhhcc------------CCCeEEeccccChhhhhhcCCCEEEE
Confidence            68999974332   33444443 3 58999999876543211            46788888876532111146899998


Q ss_pred             cCCC
Q 025534          182 DLAD  185 (251)
Q Consensus       182 D~~~  185 (251)
                      .+..
T Consensus        68 ~ag~   71 (221)
T 3ew7_A           68 AYGI   71 (221)
T ss_dssp             CCCS
T ss_pred             CCcC
Confidence            8754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=85.16  E-value=3.2  Score=37.93  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHH-HHHHhchh-c-ccCCCC-------CCCeEEEEcchHHHHhc
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLV-V-NKEAFS-------DPRLELVINDARAELES  171 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~-~-~~~~~~-------~~rv~~~~~D~~~~l~~  171 (251)
                      ++|.+||+|.  ++++..+++. + -+|+++|++++-. +..++.+. . ..+.+.       ..++++. .|. +-   
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a-G-~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl-~a---  127 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA-G-IETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF-HK---  127 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG-GG---
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-CeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH-HH---
Confidence            6899999996  3456666664 4 5899999999821 11111111 0 000000       1234432 332 11   


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                       -...|+||...+..    +   -...++|++ +.+.++|+.+++.|+.
T Consensus       128 -l~~aDlVIeAVpe~----~---~vk~~v~~~-l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          128 -LSNCDLIVESVIED----M---KLKKELFAN-LENICKSTCIFGTNTS  167 (460)
T ss_dssp             -CTTCSEEEECCCSC----H---HHHHHHHHH-HHTTSCTTCEEEECCS
T ss_pred             -HccCCEEEEcCCCC----H---HHHHHHHHH-HHhhCCCCCEEEecCC
Confidence             24689999987632    1   123577888 7899999999987764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=85.05  E-value=3.8  Score=35.03  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeEE----EEcchHHHHhcCCCce
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL----VINDARAELESRKESY  176 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~----~~~D~~~~l~~~~~~f  176 (251)
                      .+|++||+|.-+  ++..|.+. + .+|+.++.++.  +..++. +..+..  ..+..++    ...|..    ...+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g-~~V~~~~r~~~--~~i~~~Gl~~~~~--~~g~~~~~~~~~~~~~~----~~~~~~   72 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-G-HCVSVVSRSDY--ETVKAKGIRIRSA--TLGDYTFRPAAVVRSAA----ELETKP   72 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-T-CEEEEECSTTH--HHHHHHCEEEEET--TTCCEEECCSCEESCGG----GCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCChH--HHHHhCCcEEeec--CCCcEEEeeeeeECCHH----HcCCCC
Confidence            589999998654  34455553 3 58999999872  444432 222110  0122332    123321    122479


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|++-.+...         ..+.++. ++..++++.+++.-
T Consensus        73 DlVilavK~~~---------~~~~l~~-l~~~l~~~t~Iv~~  104 (320)
T 3i83_A           73 DCTLLCIKVVE---------GADRVGL-LRDAVAPDTGIVLI  104 (320)
T ss_dssp             SEEEECCCCCT---------TCCHHHH-HTTSCCTTCEEEEE
T ss_pred             CEEEEecCCCC---------hHHHHHH-HHhhcCCCCEEEEe
Confidence            99999865322         1246777 78899998866543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=85.05  E-value=3  Score=34.31  Aligned_cols=76  Identities=13%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..++||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASL-G-ASVYTCSRNQKELNDCLTQWRSK-----GFKVEASVCDLSSRSERQELMNTV   80 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            45789999987653   44555554 3 58999999987766544433211     24677888776542      211 


Q ss_pred             --CC-CceeEEEEcCC
Q 025534          172 --RK-ESYDVIIGDLA  184 (251)
Q Consensus       172 --~~-~~fD~Ii~D~~  184 (251)
                        .- ++.|+++.++-
T Consensus        81 ~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           81 ANHFHGKLNILVNNAG   96 (260)
T ss_dssp             HHHTTTCCCEEEECCC
T ss_pred             HHHcCCCCCEEEECCC
Confidence              11 57999999875

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.03  E-value=5.8  Score=32.83  Aligned_cols=76  Identities=14%  Similarity=0.285  Sum_probs=48.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      ..+.||+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+...     ..++.++..|..+.      ++  
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   92 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGL-G-ARVYTCSRNEKELDECLEIWREK-----GLNVEGSVCDLLSRTERDKLMQTV   92 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHHH
Confidence            46789999986553   34555554 3 58999999987666544433221     24678888776432      21  


Q ss_pred             -cCC-CceeEEEEcCC
Q 025534          171 -SRK-ESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~-~~fD~Ii~D~~  184 (251)
                       ..- ++.|++|.++-
T Consensus        93 ~~~~~g~id~lv~nAg  108 (273)
T 1ae1_A           93 AHVFDGKLNILVNNAG  108 (273)
T ss_dssp             HHHTTSCCCEEEECCC
T ss_pred             HHHcCCCCcEEEECCC
Confidence             111 57899999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.00  E-value=2.4  Score=35.43  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh-
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-  170 (251)
                      ..++.||+.|+++|.   +++.+++. + .+|..++.+++-.+...+.+...     .+++.++..|..+.      ++ 
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~   96 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVA-G-ARILINGTDPSRVAQTVQEFRNV-----GHDAEAVAFDVTSESEIIEAFAR   96 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEECCSCHHHHHHHHHHHHHT-----TCCEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence            457889999987664   45555554 3 58999999988777665544322     35677877776432      11 


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        ...++.|+++.++-
T Consensus        97 ~~~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           97 LDEQGIDVDILVNNAG  112 (271)
T ss_dssp             HHHHTCCCCEEEECCC
T ss_pred             HHHHCCCCCEEEECCC
Confidence              12357999999875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.95  E-value=4.2  Score=33.72  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECC------------hHHHHHHHhchhcccCCCCCCCeEEEEcchH
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDID------------EEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid------------~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~  166 (251)
                      +++.||+.|+++|.   +++.+++. + .+|.+++.+            .+-++.+.+.+...     ..++.++..|..
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~-G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEE-G-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-----GRKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-----TSCEEEEECCTT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-C-CeEEEEcccccccccccchhhhHHHHHHHHHHHhc-----CCceEEEEccCC
Confidence            56789999987664   45555554 3 589999987            55555444433321     357888888865


Q ss_pred             HH------Hhc---CCCceeEEEEcCC
Q 025534          167 AE------LES---RKESYDVIIGDLA  184 (251)
Q Consensus       167 ~~------l~~---~~~~fD~Ii~D~~  184 (251)
                      +.      +.+   .-++.|++|.++-
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            42      211   1247999999875

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=84.85  E-value=2.8  Score=35.01  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~  171 (251)
                      ..+++||+.|+++|.   +++.+++. + .+|.+++.+++-.+...+.+...     ..++.++..|..+.      +++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~  102 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEA-G-AQVAVAARHSDALQVVADEIAGV-----GGKALPIRCDVTQPDQVRGMLDQ  102 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESSGGGGHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEcCCCCHHHHHHHHHH
Confidence            356889999987664   45555654 3 58999999987776655544322     24678888886432      221


Q ss_pred             ---CCCceeEEEEcCC
Q 025534          172 ---RKESYDVIIGDLA  184 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~  184 (251)
                         .-++.|++|.++-
T Consensus       103 ~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A          103 MTGELGGIDIAVCNAG  118 (276)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               1247999999875

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=84.81  E-value=5.1  Score=32.65  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..+.+|+.|+++|.   +++.+++. + .+|.+++.+++-++...+.+...     ..++.++..|..+.      ++. 
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~   78 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAE-G-AAVAIAARRVEKLRALGDELTAA-----GAKVHVLELDVADRQGVDAAVAST   78 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            45789999987653   44555554 3 58999999987766554443321     24678888886432      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        79 ~~~~g~id~lv~nAg   93 (247)
T 2jah_A           79 VEALGGLDILVNNAG   93 (247)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247999999874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=84.77  E-value=3.8  Score=33.19  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ..++||+.|+++|.   +++.+++. + .+|++++.++.-.+...+.+...     .+++.++..|..+.      ++. 
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   82 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATA-G-ASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45789998876443   33444443 3 58999999987665544433321     24678888886532      111 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-.+.|+||.++.
T Consensus        83 ~~~~~~~d~vi~~Ag   97 (255)
T 1fmc_A           83 ISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence              1137999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=84.69  E-value=8.4  Score=32.81  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      +|.+||+|.=+.  +..++......+|+.+|++++.++.....+.... .+. ...++...|. +-+    ...|+|++-
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~-~~~-~~~~i~~~~~-~a~----~~aDvVIi~   74 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAA-PVS-HGTRVWHGGH-SEL----ADAQVVILT   74 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSC-CTT-SCCEEEEECG-GGG----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhh-hhc-CCeEEEECCH-HHh----CCCCEEEEc
Confidence            789999976443  3334443323489999999986653222111100 011 2344444452 212    468999998


Q ss_pred             CCCCCCCCc-ccCCc--c----HHHHHHHHcccCCCCcEEEEec
Q 025534          183 LADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       183 ~~~~~~~~p-~~~l~--~----~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...|...+. ...+.  +    ++.++. +.+. .|++++++-+
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~~~vi~~t  116 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQ-ITRA-APDAVLLVTS  116 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHH-HHHH-CSSSEEEECS
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHH-HHHh-CCCeEEEEec
Confidence            743321010 00111  1    455565 4554 7999887633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	1e-67
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	8e-63
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	4e-62
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	2e-61
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	2e-60
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	2e-59
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	1e-52

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  209 bits (532), Expect = 1e-67
 Identities = 72/204 (35%), Positives = 121/204 (59%), Gaps = 5/204 (2%)

Query: 39  NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98
              +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  + 
Sbjct: 43  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 102

Query: 99  HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
            HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L
Sbjct: 103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 162

Query: 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
           +L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q
Sbjct: 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ 219

Query: 219 AGPAGIFSHTEVFSCIYNTLRQVF 242
                ++ H  + + +    R++F
Sbjct: 220 GE--SVWLHLPLIAHLVAFNRKIF 241

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score =  196 bits (499), Expect = 8e-63
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 27  RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 13  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 72

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 73  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 132

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G     L+T+ FY+   
Sbjct: 133 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGG-HLFTEEFYQACY 191

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246
                 +G+F  +      F     F   Y  + +VF    
Sbjct: 192 DAL-KEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITR 229

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 4e-62
 Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 7/215 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +LH   +RYQDI +  +K +G  LV+DG +Q  E DEF Y
Sbjct: 5   WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C+IDE+V++  K +L  
Sbjct: 65  QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               +S  +L L + D    ++  ++++DVII D +DP+  GP   L+ +S+Y+  +K  
Sbjct: 125 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQL-MKTA 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           L  +G+   Q      + H ++   +    + +F 
Sbjct: 182 LKEDGVLCCQGE--CQWLHLDLIKEMRQFCQSLFP 214

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  193 bits (491), Expect = 2e-61
 Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 4/216 (1%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244
           LNP G+   Q G   + +H  V   ++ T+R+ F+ 
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRY 219

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score =  189 bits (482), Expect = 2e-60
 Identities = 72/212 (33%), Positives = 123/212 (58%), Gaps = 5/212 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY   +   L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAG-IAKALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242
            +GIFV Q      +   E+ + +   ++++F
Sbjct: 181 EDGIFVAQTD--NPWFTPELITNVQRDVKEIF 210

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  188 bits (477), Expect = 2e-59
 Identities = 76/216 (35%), Positives = 121/216 (56%), Gaps = 8/216 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y
Sbjct: 7   WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 66

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + H  L   PNPK + ++GGG+G   RE+ RH ++E++ MC+ID+ VV+  K +   
Sbjct: 67  QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 126

Query: 149 NKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP 207
               + DPR+ LVI D  A L++  + SYD +I D +DPI  GP  +L+ K F++ V + 
Sbjct: 127 VAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR- 183

Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
            L P G+  TQA    ++ H ++   I +  R++FK
Sbjct: 184 ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFK 217

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  170 bits (431), Expect = 1e-52
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 13/221 (5%)

Query: 32  YEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHES 91
           + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE 
Sbjct: 2   FIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEP 61

Query: 92  LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE 151
           LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++  
Sbjct: 62  LVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNG 120

Query: 152 AF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
                      + +L I D    ++     +DVII D  DP+   P   L+++ FY + V
Sbjct: 121 LLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPVG--PAKVLFSEEFYRY-V 176

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246
              LN  GI+VTQAG   ++  T+     Y  +++VF   Y
Sbjct: 177 YDALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVY 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	100.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	100.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	100.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	100.0
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	100.0
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	100.0
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.61
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.6
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.59
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.58
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.57
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.57
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.57
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.56
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.55
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.55
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.55
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.55
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.53
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.52
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.51
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.51
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.51
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.5
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.48
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.48
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.48
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.47
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.47
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.46
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.45
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.44
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.44
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.43
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.42
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.41
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.41
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.41
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.39
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.38
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.38
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.37
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.36
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.36
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.35
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.31
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.31
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.31
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.3
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.3
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.29
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.28
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.28
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.26
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.26
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.25
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.23
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.23
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.23
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.22
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.21
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.17
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.12
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.99
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.95
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.92
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.92
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.81
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.73
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.73
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.65
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.57
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.49
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.46
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.4
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.34
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.29
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.28
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.26
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.25
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.22
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.18
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.18
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.15
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.15
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.15
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.09
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.05
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.98
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.67
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.63
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.08
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.07
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.88
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.55
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.39
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.34
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.87
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.71
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.7
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.68
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.61
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.57
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.56
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.53
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.44
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.38
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.27
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.22
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.09
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.09
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.01
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.84
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.65
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.22
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.19
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.72
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.33
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.89
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.84
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.55
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.29
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.15
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.95
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.88
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.8
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.76
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.73
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.69
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.55
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.11
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.93
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	90.59
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	90.59
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.26
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	90.24
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.78
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.76
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	89.56
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.5
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.27
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.11
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.09
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.09
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.7
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.59
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	88.41
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	88.26
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.06
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.03
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.85
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.52
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	87.21
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.09
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.86
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.81
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.59
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.4
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.13
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	86.11
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	86.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	85.92
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.71
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	85.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.39
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.79
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	84.4
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	84.37
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.24
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.18
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	84.09
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	84.04
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.03
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	83.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.79
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	83.56
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.49
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	83.08
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	83.02
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.99
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	82.81
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	82.72
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	82.52
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	82.31
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.21
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	82.2
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	81.76
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.6
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	81.12
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.07
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	81.02
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	80.72
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	80.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.47
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	80.32
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.25

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.9e-49  Score=343.19  Aligned_cols=219  Identities=33%  Similarity=0.636  Sum_probs=197.6

Q ss_pred             cccceEEeeec-cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCe
Q 025534           27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (251)
Q Consensus        27 ~~~~w~~~~~~-~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~  105 (251)
                      +..+|+.|..+ ++++..+.++++|++.+|+||+|+|++++.+|++|+|||.+|+++.|++.|||+|+|+|++.+++|++
T Consensus        13 ~~~~w~~e~~~~~~~~~~~~v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~   92 (295)
T d1inla_          13 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK   92 (295)
T ss_dssp             CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCcEEEEecccCCCceEEEEEEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCce
Confidence            44789999886 68999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      ||+||+|+|+++++++++++..+|++|||||+|+++|+++|+.+...+.+||++++++||++|+++.+++||+|++|+++
T Consensus        93 VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d  172 (295)
T d1inla_          93 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD  172 (295)
T ss_dssp             EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred             EEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCC
Confidence            99999999999999999987889999999999999999999876556779999999999999999888899999999998


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |.. +|...|++.+||+. ++++|+|||++++|+++|  +.+.+.++.++++++++||++.+|.
T Consensus       173 p~~-~~~~~L~t~efy~~-~~~~L~~~Gi~v~q~~sp--~~~~~~~~~i~~tl~~vF~~v~~y~  232 (295)
T d1inla_         173 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYL  232 (295)
T ss_dssp             ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCc-CchhhhccHHHHHH-HHhhcCCCcEEEEecCCh--hhhhHHHHHHHHHHHhhcceeEEEE
Confidence            863 45568999999999 799999999999999888  6788899999999999999999985

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.4e-48  Score=336.82  Aligned_cols=216  Identities=34%  Similarity=0.701  Sum_probs=204.4

Q ss_pred             cceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEE
Q 025534           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (251)
Q Consensus        29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~  108 (251)
                      ++|++|..+++.+..|.++++|++.+|+||+|+|++++.+||+|+|||.+|+++.+++.|||+++|+|++.+++|++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~i~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLi   81 (274)
T d1iy9a_           2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (274)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CcceeeecCCCceEEEEEeeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCC
Q 025534          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (251)
Q Consensus       109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~  188 (251)
                      ||+|+|+++++++++++..+|++|||||+|+++|+++|+.+.+.+++||++++.+|+++|+++.+++||+|++|+++|. 
T Consensus        82 iGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~-  160 (274)
T d1iy9a_          82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (274)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             cCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCC-
Confidence            9999999999999998788999999999999999999987666788999999999999999988899999999999987 


Q ss_pred             CCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       189 ~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                       +++..|++++||+. ++++|+|||++++|.++|  +...+.++.+.++|+++||++.+|.
T Consensus       161 -~~~~~L~t~eFy~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~i~~tl~~~F~~v~~y~  217 (274)
T d1iy9a_         161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYT  217 (274)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             -CcchhhccHHHHHH-HHhhcCCCceEEEecCCc--cccHHHHHHHHHhhhhhcCceEEEE
Confidence             45578999999999 799999999999999887  6778899999999999999999885

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-48  Score=336.17  Aligned_cols=217  Identities=32%  Similarity=0.646  Sum_probs=193.6

Q ss_pred             ccceEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCe
Q 025534           28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (251)
Q Consensus        28 ~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~  105 (251)
                      ...|+.|..+  ++.+..|.++++|++++|+||+|.|++++++||+|++||.+|+++.|++.|||+++|+|++.+++|++
T Consensus         2 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~   81 (285)
T d2o07a1           2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRK   81 (285)
T ss_dssp             BTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCE
T ss_pred             CCCcccccccCCCCceEEEEEeeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCe
Confidence            4689999877  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      ||+||+|+|+++++++++++..+|++|||||+|+++|+++|+.+...+.+||++++++||++|++...++||+|++|+++
T Consensus        82 vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~  161 (285)
T d2o07a1          82 VLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD  161 (285)
T ss_dssp             EEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-
T ss_pred             EEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC
Confidence            99999999999999999987889999999999999999999865445678999999999999999888899999999998


Q ss_pred             CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |.  +++..|+|.+||+. ++++|+|||++++|+++|  +...+.++.+.++|+++||++.+|.
T Consensus       162 p~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~  220 (285)
T d2o07a1         162 PM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAY  220 (285)
T ss_dssp             ------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CC--CcccccccHHHHHH-HHHhcCCCCeEEEeccch--hhhHHHHHHHHHHHHhcCCeeeEEe
Confidence            87  45579999999999 799999999999999887  5678899999999999999998875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-47  Score=334.59  Aligned_cols=217  Identities=35%  Similarity=0.668  Sum_probs=201.2

Q ss_pred             ccceEEeeec--cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCe
Q 025534           28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (251)
Q Consensus        28 ~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~  105 (251)
                      .++|+.|...  ++.+..+.+.++|++.+|+||+|+|++++.+||+|+|||.+|+++.+++.|||+++|+|++.+++|+|
T Consensus         4 ~~~w~~e~~~~~~~~~~~~~v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~   83 (290)
T d1xj5a_           4 IPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK   83 (290)
T ss_dssp             CSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCE
T ss_pred             CCcceeccccCCCCceEEEEEeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcc
Confidence            3579999865  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCC
Q 025534          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLA  184 (251)
Q Consensus       106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~  184 (251)
                      ||+||+|+|+++++++++++..+|++||||++|+++|+++|+.+...+++||++++.+|+++|+.+. +++||+||+|++
T Consensus        84 VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~  163 (290)
T d1xj5a_          84 VLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS  163 (290)
T ss_dssp             EEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC
T ss_pred             eEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCC
Confidence            9999999999999999998888999999999999999999986555577999999999999999765 468999999999


Q ss_pred             CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      +|.  +++..|++.+||+. ++++|+|||++++|.++|  +...+.++.+.++|+++||++.+|.
T Consensus       164 dp~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~~~~y~  223 (290)
T d1xj5a_         164 DPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYA  223 (290)
T ss_dssp             CTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCC--CcchhhCCHHHHHH-HHHhcCCCcEEEEecCCc--HHHHHHHHHHHhhhhhhcccceeEe
Confidence            987  56689999999999 799999999999999887  6678899999999999999999874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-47  Score=336.44  Aligned_cols=207  Identities=35%  Similarity=0.690  Sum_probs=184.0

Q ss_pred             cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHH
Q 025534           38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA  117 (251)
Q Consensus        38 ~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~  117 (251)
                      ++.+.++.++++||+++|+||+|+|++++.+|++|+|||.+|+++.|++.|||+|+|+|++.+++|++||+||+|+|+++
T Consensus        42 pg~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~  121 (312)
T d2b2ca1          42 PGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGIL  121 (312)
T ss_dssp             TTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHH
T ss_pred             CCceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCcc
Q 025534          118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT  197 (251)
Q Consensus       118 ~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~  197 (251)
                      ++++++++..+|++||||++|+++|++||+.+...+++||++++++||++|++...++||+||+|+++|.  +++..|++
T Consensus       122 rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~--~~~~~L~t  199 (312)
T d2b2ca1         122 REVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFG  199 (312)
T ss_dssp             HHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------
T ss_pred             HHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCC--Ccchhhhh
Confidence            9999998888999999999999999999987666678999999999999999988899999999999886  55678999


Q ss_pred             HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       198 ~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      .+||+. ++++|+|||++++|+++|  +...+.+..+.++++++|+++.+|.
T Consensus       200 ~eFy~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~v~~y~  248 (312)
T d2b2ca1         200 QSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQ  248 (312)
T ss_dssp             --HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHH-HHhhcCCCcEEEEecCCh--HHhHHHHHHHHHHhhhccceEEEee
Confidence            999999 799999999999999887  6778899999999999999999885

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.3e-47  Score=335.28  Aligned_cols=221  Identities=44%  Similarity=0.732  Sum_probs=199.8

Q ss_pred             cccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (251)
Q Consensus        27 ~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V  106 (251)
                      +.++|+.|+.+++.+..+++.++|++.+|+||+|+|++++.+||+|+|||.+|+++.+++.|||+|+|+|++.+++|++|
T Consensus         2 ~~~~~~~e~~~~~~~~~~~~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~V   81 (312)
T d1uira_           2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (312)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCcEEEEEecCCCceEEEEEEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~  185 (251)
                      |+||+|+|+++++++++++..+|++||+||+++++|+++|+. +...+++||++++++|+++|+++.+++||+|++|+++
T Consensus        82 LiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~d  161 (312)
T d1uira_          82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (312)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCC
Confidence            999999999999999987778999999999999999999963 4445678999999999999999888899999999998


Q ss_pred             CCC-CCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          186 PIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       186 ~~~-~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |.. ..++..|+|.+||+. ++++|+|||++++|+++|. ....+..+.+.++|+++|++|.+|.
T Consensus       162 p~~~~~~~~~L~t~eF~~~-~~~~L~p~Gvlv~~~~s~~-~~~~~~~~~i~~tl~~~F~~V~~y~  224 (312)
T d1uira_         162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMIL-LTHHRVHPVVHRTVREAFRYVRSYK  224 (312)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEEC-C---CHHHHHHHHHHTTCSEEEEEE
T ss_pred             cccccchhhhhhhHHHHHH-HHHhcCCCceEEEecCCcc-cchHHHHHHHHHHHHHhCceEEEEE
Confidence            753 245568999999999 7999999999999987662 2344567788899999999999985

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.5e-44  Score=308.42  Aligned_cols=211  Identities=34%  Similarity=0.658  Sum_probs=188.7

Q ss_pred             EeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecC
Q 025534           33 EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGG  112 (251)
Q Consensus        33 ~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G  112 (251)
                      .|+.+++.+..|.++++|++.+|+||+|+|+++..+||+|+|||.+|+++.+++.|||+|+|+|++.+++|++||+||+|
T Consensus         3 ~e~~~~~~~~~~~~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G   82 (276)
T d1mjfa_           3 IEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGG   82 (276)
T ss_dssp             EEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECT
T ss_pred             eeEecCCceEEEEEeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCC
Confidence            36667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534          113 EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------AFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (251)
Q Consensus       113 ~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~  186 (251)
                      +|++++++++++. .+|++|||||+|+++|+++|+.+..      ...+||++++++|+++|+++ .++||+||+|+++|
T Consensus        83 ~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~  160 (276)
T d1mjfa_          83 DGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDP  160 (276)
T ss_dssp             TSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCC
T ss_pred             chHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCC
Confidence            9999999999864 7999999999999999999975432      23589999999999999975 57899999999988


Q ss_pred             CCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL  250 (251)
Q Consensus       187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~  250 (251)
                      .  +++..|++.+||+. ++++|+|||++++|+++|  +...+.+..+.++|+++|++|.+|..
T Consensus       161 ~--~~~~~L~t~eF~~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~  219 (276)
T d1mjfa_         161 V--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSF  219 (276)
T ss_dssp             C-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             C--CCcccccCHHHHHh-hHhhcCCCceEEEecCCc--chhHHHHHHHHHHHHhhCCeeEEEEe
Confidence            6  45578999999999 799999999999999887  56778899999999999999998853

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=1.2e-15  Score=123.70  Aligned_cols=129  Identities=16%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++++|||+|||+|.++..+++..  .+|+++|+|+.+++.|++++..++  ....+++++.+|..+.+.  +++||+|
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~~~~--~~~fD~I  123 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKI  123 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEE
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhC--CccceEEEEEcchhhhhc--cCCceEE
Confidence            3467899999999999999998863  589999999999999999987653  345689999999877543  5789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY  246 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~  246 (251)
                      +++++.+.  +.   -...++++. +.++|+|||++++....      ......+...+.+.|..+.
T Consensus       124 i~~~p~~~--~~---~~~~~~l~~-~~~~LkpgG~l~i~~~~------~~~~~~~~~~l~~~f~~~~  178 (194)
T d1dusa_         124 ITNPPIRA--GK---EVLHRIIEE-GKELLKDNGEIWVVIQT------KQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             EECCCSTT--CH---HHHHHHHHH-HHHHEEEEEEEEEEEES------THHHHHHHHHHHHHHSCCE
T ss_pred             EEcccEEe--cc---hhhhhHHHH-HHHhcCcCcEEEEEEeC------cCCHHHHHHHHHHhCCcEE
Confidence            99987433  21   123578888 79999999988764321      2233455566777776654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.5e-16  Score=127.56  Aligned_cols=109  Identities=9%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I  179 (251)
                      +++++|||||||+|..+.+++++. ..+|++||+|+.+++.|++++...     ..+++++.+|+...... ..++||.|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhc-----ccccccccccccccccccccccccce
Confidence            567899999999999999999874 468999999999999999987643     36789999999887654 35789999


Q ss_pred             EEcCCCCCCCCcccCC-ccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l-~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +.|.....  ....++ ....+++. ++++|||||+|++.
T Consensus       126 ~fD~~~~~--~~~~~~~~~~~~~~~-~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  162 (229)
T ss_dssp             EECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             eecccccc--cccccccCHHHHHHH-HHHHcCCCcEEEEE
Confidence            99986432  111222 23467888 79999999999863

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=1e-14  Score=117.46  Aligned_cols=121  Identities=18%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ...+..+|||||||+|.++.++++.  ..+|++||+|+.+++.|++++..++   ..++++++++|+.+.+. ..+.||+
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g---l~~~v~~~~gda~~~~~-~~~~~D~  103 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALC-KIPDIDI  103 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHT-TSCCEEE
T ss_pred             CCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC---CCcceEEEECchhhccc-ccCCcCE
Confidence            3346789999999999999999875  3599999999999999999987653   34699999999988864 3478999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      |+++....         ...++++. +.++|||||.+++...      ..+....+.+.++..
T Consensus       104 v~~~~~~~---------~~~~~~~~-~~~~LkpgG~lvi~~~------~~e~~~~~~~~l~~~  150 (186)
T d1l3ia_         104 AVVGGSGG---------ELQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDL  150 (186)
T ss_dssp             EEESCCTT---------CHHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred             EEEeCccc---------cchHHHHH-HHHHhCcCCEEEEEee------ccccHHHHHHHHHHc
Confidence            99985421         13578888 7999999999988642      234445566666654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.59  E-value=8.9e-16  Score=120.11  Aligned_cols=108  Identities=15%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|+++.+++.+ ++.+|++||+|+.+++.+++++..++   ...+++++.+|+.+++....++||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc---cccchhhhcccccccccccccccceeE
Confidence            46789999999999999998886 55799999999999999999987653   346899999999999987788999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~~  220 (251)
                      +|||...  .    . ....+.. +  .+.|+|+|++++...
T Consensus        89 ~DPPy~~--~----~-~~~~l~~-i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          89 LDPPYAK--E----T-IVATIEA-LAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             ECCSSHH--H----H-HHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             echhhcc--c----h-HHHHHHH-HHHCCCcCCCeEEEEEeC
Confidence            9986321  1    1 1233333 2  468999999998754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.58  E-value=3.4e-15  Score=123.11  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|||||||+|.++..++++.  .+|++||+|+.+++.|++.+...    ..++++++++|+.+. ...+++||+|+
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~----~~~~i~~~~~d~~~l-~~~~~~fD~v~   86 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQM-PFTDERFHIVT   86 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-CC-CSCTTCEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc----ccccccccccccccc-ccccccccccc
Confidence            456899999999999999999873  58999999999999999987654    247899999998764 33468999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-.+...      -..++++ ++++|+|||++++.
T Consensus        87 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLV  117 (231)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccccccccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence            8754222112      2478898 79999999988874

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3e-15  Score=125.27  Aligned_cols=106  Identities=22%  Similarity=0.197  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||+|.++..+++..+ .+|++||+|+.+++.|++.....+   ..++++++.+|+.+..  .+++||+|+
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g---l~~~v~~~~~d~~~~~--~~~~fD~v~  105 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYV--ANEKCDVAA  105 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh---ccccchhhhhHHhhcc--ccCceeEEE
Confidence            4568999999999999999988655 699999999999999999876443   3468999999998863  357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +--...+...      -..++++ +++.|||||++++..
T Consensus       106 ~~~~~~~~~d------~~~~l~~-~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         106 CVGATWIAGG------FAGAEEL-LAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EESCGGGTSS------SHHHHHH-HTTSEEEEEEEEEEE
T ss_pred             EEehhhccCC------HHHHHHH-HHHHcCcCcEEEEEe
Confidence            8643222111      2578999 799999999998853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=4.2e-15  Score=123.47  Aligned_cols=104  Identities=18%  Similarity=0.212  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.||||||||+|.++..+++..  .+|++||+++.+++.|++++...+    .+++.++++|+.+. .-.+++||+|+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~----~~~~~~~~~d~~~~-~~~~~~fD~v~   87 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAESL-PFPDDSFDIIT   87 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTBC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccc----cccccccccccccc-cccccccceee
Confidence            467899999999999999999863  589999999999999999876542    36799999998763 33468999999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +.-.-++...      -.++++. ++++|||||.+++.
T Consensus        88 ~~~~l~~~~d------~~~~l~~-~~r~LkpgG~~~~~  118 (234)
T d1xxla_          88 CRYAAHHFSD------VRKAVRE-VARVLKQDGRFLLV  118 (234)
T ss_dssp             EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeceeecccC------HHHHHHH-HHHeeCCCcEEEEE
Confidence            9754322112      2578998 79999999988764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.57  E-value=3e-14  Score=124.09  Aligned_cols=116  Identities=13%  Similarity=0.135  Sum_probs=90.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++++||+++||+|+++..+++. +..+|++||+|+..++++++++..|+  +...+++++.+|++++++.   .+++||
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~--l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhc--ccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            46789999999999999988774 56799999999999999999998775  2346899999999999864   457899


Q ss_pred             EEEEcCCCCCCCCcccCCcc-----HHHHHHHHcccCCCCcEEEEecCCC
Q 025534          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~-----~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +||+|||.-.. .+ ..+.+     .+.++. +.++|+|||+|++-++++
T Consensus       220 ~Ii~DPP~f~~-~~-~~~~~~~~~~~~L~~~-a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         220 IIIIDPPSFAR-NK-KEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEECCCCC-------CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             EEEEcChhhcc-ch-hHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCc
Confidence            99999984221 11 12221     346666 578999999999888776

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.56  E-value=2.2e-15  Score=125.95  Aligned_cols=107  Identities=13%  Similarity=0.171  Sum_probs=82.4

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..+++++|||||||+|..+..+++..  .+|++||+|+.|++.|+++.+..     ..+++++++|+.++-  ..++||+
T Consensus        34 ~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~  104 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNLN--INRKFDL  104 (246)
T ss_dssp             TTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGCC--CSCCEEE
T ss_pred             hCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc-----Cccceeeccchhhhc--ccccccc
Confidence            34567899999999999999999863  48999999999999999987643     257999999998752  3578999


Q ss_pred             EEEc--CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGD--LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D--~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++-  ...... .+   -....+++. ++++|+|||++++..
T Consensus       105 i~~~~~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         105 ITCCLDSTNYII-DS---DDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             EEECTTGGGGCC-SH---HHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             cceeeeeeeccC-CH---HHHHHHHHH-HHHhCCCCeEEEEEe
Confidence            9974  221110 11   012358898 799999999999764

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=7.3e-14  Score=119.09  Aligned_cols=141  Identities=17%  Similarity=0.206  Sum_probs=101.7

Q ss_pred             eeEEEEcCccccccccchhHHHHHHHhHhh-cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534           69 GKALVIDGKLQSAEVDEFIYHESLVHPALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus        69 g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~-~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      |..+.++-.+-+..++    +|.++...+. ....+.+|||+|||+|.++..+++..+..+|+++|+|+.++++|+++..
T Consensus        78 ~~~~~v~~~VlIPRpe----TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          78 SLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             TEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             eeEEEEeccccccccc----hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence            4555555554444333    4445443332 2345678999999999999999886666899999999999999999987


Q ss_pred             cccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCcc--------HHHHHHHHccc
Q 025534          148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLYT--------KSFYEFVVKPR  208 (251)
Q Consensus       148 ~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~----------~~p~~~l~~--------~ef~~~~~~~~  208 (251)
                      .++    -.+++++++|.++.+.  +++||+|++|||. +..          ..|...|+.        ..++.. +.++
T Consensus       154 ~~~----~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~-a~~~  226 (274)
T d2b3ta1         154 HLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRNA  226 (274)
T ss_dssp             HHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGGG
T ss_pred             HhC----cccceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH-HHHh
Confidence            653    2579999999887653  4699999999983 211          133334443        346677 6899


Q ss_pred             CCCCcEEEEecC
Q 025534          209 LNPEGIFVTQAG  220 (251)
Q Consensus       209 L~pgG~l~~~~~  220 (251)
                      |+|||.+++..+
T Consensus       227 L~~~G~l~lEig  238 (274)
T d2b3ta1         227 LVSGGFLLLEHG  238 (274)
T ss_dssp             EEEEEEEEEECC
T ss_pred             cCCCCEEEEEEC
Confidence            999999999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.55  E-value=6.3e-15  Score=124.25  Aligned_cols=118  Identities=15%  Similarity=0.171  Sum_probs=95.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+|||+|.++..+++. .+..+|+++|+++++++.|++++....   ...+++++.+|..+.+.  ++.||.|
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~~~~--~~~fD~V  158 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFIS--DQMYDAV  158 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCCC--SCCEEEE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeecccc--cceeeee
Confidence            45689999999999999999885 345699999999999999999986432   34689999999887643  4789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ++|.++|+           ++++. +.+.|||||++++..  |    ..+...++.+.|++.
T Consensus       159 ~ld~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~  202 (250)
T d1yb2a1         159 IADIPDPW-----------NHVQK-IASMMKPGSVATFYL--P----NFDQSEKTVLSLSAS  202 (250)
T ss_dssp             EECCSCGG-----------GSHHH-HHHTEEEEEEEEEEE--S----SHHHHHHHHHHSGGG
T ss_pred             eecCCchH-----------HHHHH-HHHhcCCCceEEEEe--C----CcChHHHHHHHHHHC
Confidence            99988765           34677 689999999999864  3    245667788888765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.6e-13  Score=119.74  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++++||++|||+|+.+..+++. +..+|++||+++.+++.+++++..++   -.++++++++|+++++..   .+++||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ng---l~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG---VEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcC---CCccceeeechhhhhhHHHHhccCCCC
Confidence            45789999999999999999886 45799999999999999999998775   246899999999998753   467999


Q ss_pred             EEEEcCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      +|++|+|.... .. ....     -.+++.. +.++|+|||+|++-++++
T Consensus       220 ~Vi~DpP~~~~-~~-~~~~~~~~~y~~l~~~-a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         220 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred             chhcCCccccC-CH-HHHHHHHHHHHHHHHH-HHHHcCCCcEEEEEeCCc
Confidence            99999984321 11 1111     1345666 579999999999877665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=4.7e-14  Score=115.46  Aligned_cols=127  Identities=10%  Similarity=0.121  Sum_probs=100.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~  181 (251)
                      ..-|||||||+|..+..+++..+...+++||+++.++..|.+.....+    ..+++++.+|+...... .++.+|.|++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~----l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh----ccCchhcccchhhhhcccCchhhhcccc
Confidence            346999999999999999887666899999999999999988876442    36899999999887643 4578999999


Q ss_pred             cCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       182 D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      .-++|+....  ...+.+.+|++. ++++|||||.|.+.+.      .......+.+.+.+
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~-~~r~LkpgG~l~i~TD------~~~y~~~~~~~~~~  159 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSE  159 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHH
T ss_pred             ccccccchhhhcchhhhHHHHHHH-HHHhCCCCcEEEEEEC------ChHHHHHHHHHHHH
Confidence            9888874221  246778999999 8999999999988652      34555566666654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2e-14  Score=122.01  Aligned_cols=128  Identities=18%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..++.+|||+|||+|.++..+++. .+..+|+++|+++++++.|++++..... ....+++++++|+.+. ...++.||.
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-~~~~nv~~~~~d~~~~-~~~~~~fDa  171 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS-ELPDGSVDR  171 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC-CCCTTCEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc-CCCceEEEEecccccc-cccCCCcce
Confidence            356799999999999999999985 4457999999999999999998763211 1346899999998763 223578999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh--CCceee
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV--FKCGYN  247 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~--F~~v~~  247 (251)
                      |++|.++||           +++.. ++++|||||.+++..  |    ..+..+++.++|++.  |-....
T Consensus       172 V~ldlp~P~-----------~~l~~-~~~~LkpGG~lv~~~--P----~i~Qv~~~~~~l~~~~~f~~i~~  224 (264)
T d1i9ga_         172 AVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYV--A----TVTQLSRIVEALRAKQCWTEPRA  224 (264)
T ss_dssp             EEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHHSSBCCCEE
T ss_pred             EEEecCCHH-----------HHHHH-HHhccCCCCEEEEEe--C----ccChHHHHHHHHHHcCCeecceE
Confidence            999998776           34667 699999999999875  3    355677888888743  554443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.53  E-value=1.9e-14  Score=124.57  Aligned_cols=136  Identities=15%  Similarity=0.195  Sum_probs=95.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~f  176 (251)
                      ..++++||+++||+|+++..+++. + ++|++||+|+.+++.|++++..|+  +.+.+++++++|+++|++.   .+++|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~-G-A~V~~VD~s~~al~~a~~N~~ln~--~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA-G-AEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC-C-CeEEEEeChHHHHHHHHHhhhhhc--ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            356789999999999999998875 4 589999999999999999998775  3456899999999999864   35789


Q ss_pred             eEEEEcCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEE-EEecCCCCCCCChHHHHHHHH-HHHhhCC
Q 025534          177 DVIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIF-VTQAGPAGIFSHTEVFSCIYN-TLRQVFK  243 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l-~~~~~~p~~~~~~~~~~~i~~-~l~~~F~  243 (251)
                      |+||+|||.-.. ++....+     -....+. ++++|+|||.+ ++.+.++  ......+..++. +++....
T Consensus       206 D~IilDPP~f~~-~~~~~~~~~~~~~~~l~~~-~~~ll~~~g~~ll~t~~s~--~~s~~~~~~~~~~~~~~ag~  275 (309)
T d2igta1         206 DIILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI--RASFYSMHELMRETMRGAGG  275 (309)
T ss_dssp             SEEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT--TSCHHHHHHHHHHHTTTSCS
T ss_pred             CEEEECCCcccc-cccchhHHHHHHHHHHHHH-HHHhcCCCCCEEEEecCCC--CCCHHHHHHHHHHHHHhcCC
Confidence            999999983211 1111111     1345556 57899999864 4444443  234444444433 3443333

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=1.5e-13  Score=119.63  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++++|||++||+|+++..+++.  ..+|++||+|+.+++.|++++..++    -.+++++.+|++++++.   ..++||
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcC----CCCcceeeccHHHHhhhhHhhhcCCC
Confidence            36789999999999999988763  4799999999999999999998774    24799999999998653   467999


Q ss_pred             EEEEcCCCCCCCCcccCCcc-----HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHH-HHHHHHhh
Q 025534          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC-IYNTLRQV  241 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~-----~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~-i~~~l~~~  241 (251)
                      +|++|+|.... +. ..+..     .++... +.++|+|||++++.++++.  ...+.+.. +.+.+...
T Consensus       218 ~Vi~DpP~~~~-~~-~~~~~~~~~~~~l~~~-a~~lLkpGG~Lv~~scs~~--~~~~~f~~~v~~a~~~a  282 (318)
T d1wxxa2         218 LVVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSHH--MTEPLFYAMVAEAAQDA  282 (318)
T ss_dssp             EEEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCcccc-ch-HHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCcc--cCHHHHHHHHHHHHHHc
Confidence            99999984321 11 11211     345666 5789999999998877663  33444443 33444443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4e-14  Score=113.92  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ...+|||++||+|+++.+++.+ ++.+|+.||.|+.+++.+++++....    ..+.+++.+|+.+++....++||+|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~----~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhcc----ccceeeeeecccccccccccccCEEEE
Confidence            5689999999999999999986 56799999999999999999987542    357899999999999877789999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~  219 (251)
                      |||...  .    + ..+.+.. +  ...|+++|+++++.
T Consensus       118 DPPY~~--~----~-~~~~l~~-l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFRR--G----L-LEETINL-LEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSST--T----T-HHHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred             cCcccc--c----h-HHHHHHH-HHHCCCCCCCeEEEEEe
Confidence            987432  1    1 2344444 3  35799999999875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.9e-14  Score=120.06  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=81.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++++|||||||+|..+..+++..  .+|++||+|+.|++.|++.++..     ..+++++++|+.++-  .+++||+|
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~-----~~~i~~~~~d~~~l~--~~~~fD~I  109 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAV  109 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccc-----cccchheehhhhhcc--cccccchH
Confidence            3456899999999999999998863  58999999999999999987643     358999999988752  34689999


Q ss_pred             EEcCC--CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLA--DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~--~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++-..  .+.  .+   -....+++. ++++|+|||++++..
T Consensus       110 ~~~~~~~~~~--~~---~~~~~~L~~-~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYF--DE---EDLRKLFSK-VAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            98521  111  11   012468888 799999999998754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=3.2e-14  Score=116.23  Aligned_cols=107  Identities=19%  Similarity=0.219  Sum_probs=82.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++..+|||||||+|.++..+++. + .+|+++|+|+.+++.|++.+...     .++++++.+|+.+. ...+++||+|
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~-~-~~v~giD~S~~~i~~ak~~~~~~-----~~~~~~~~~d~~~l-~~~~~~fD~I  106 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY-G-FEVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYV  106 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh-h-cccccccccccchhhhhhhhccc-----cccccccccccccc-cccCcCceEE
Confidence            356689999999999999999986 3 58999999999999999876533     35788999998874 3446889999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-.+  -+.  ..-..+++. +.++|||||++++..
T Consensus       107 ~~~~~l~~--~~~--~d~~~~l~~-i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         107 IFIDSIVH--FEP--LELNQVFKE-VRRVLKPSGKFIMYF  141 (226)
T ss_dssp             EEESCGGG--CCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEecchhh--CCh--hHHHHHHHH-HHHHcCcCcEEEEEE
Confidence            98743211  110  012357888 799999999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.50  E-value=1.5e-14  Score=123.45  Aligned_cols=106  Identities=15%  Similarity=0.132  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +++.+|||||||+|.++..++++.+ .+|++||+++.+++.|+++....+   ..++++++.+|+.+. ...+++||+|+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~g---l~~~v~~~~~d~~~l-~~~~~sfD~V~  140 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFIW  140 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhccccccc---ccccccccccccccc-cccccccchhh
Confidence            5678999999999999999988654 589999999999999999876433   346899999998774 33458899999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +... .+.. .      -..+++. ++++|||||++++..
T Consensus       141 ~~~~l~h~~-d------~~~~l~~-~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         141 SQDAFLHSP-D------KLKVFQE-CARVLKPRGVMAITD  172 (282)
T ss_dssp             EESCGGGCS-C------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ccchhhhcc-C------HHHHHHH-HHHhcCCCcEEEEEE
Confidence            8643 2221 1      2478898 799999999988753

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=4.9e-14  Score=116.29  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      .++..+|||||||+|..+..++++  .+..+|++||+|+.|++.|+++.....   ...++++..+|..++   ..+++|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~d  110 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV---EIKNAS  110 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCTTTC---CCCSEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchhhcc---ccccce
Confidence            356689999999999999999874  245699999999999999999876332   356888999997654   346899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|++...-++. .+   -....+++. +++.|+|||.+++.
T Consensus       111 ~i~~~~~l~~~-~~---~d~~~~l~~-i~~~LkpgG~li~~  146 (225)
T d1im8a_         111 MVILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEEESCGGGS-CG---GGHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeEEeeecccc-Ch---hhHHHHHHH-HHHhCCCCceeecc
Confidence            99987553321 11   122478999 79999999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=4.4e-14  Score=119.34  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=81.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++++|||+|||+|.++..+++. + .+|++||+|+.+++.|+++...++     -+++++++|..+.+.  .++||+|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~-g-~~V~gvDis~~av~~A~~na~~n~-----~~~~~~~~d~~~~~~--~~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL-G-GKALGVDIDPMVLPQAEANAKRNG-----VRPRFLEGSLEAALP--FGPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCGGGHHHHHHHHHHTT-----CCCEEEESCHHHHGG--GCCEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc-C-CEEEEEECChHHHHHHHHHHHHcC-----CceeEEecccccccc--ccccchh
Confidence            356789999999999999988875 4 589999999999999999987663     356899999887653  4689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +++...+    +     ..++++. ++++|||||++++.
T Consensus       189 ~ani~~~----~-----l~~l~~~-~~~~LkpGG~lilS  217 (254)
T d2nxca1         189 VANLYAE----L-----HAALAPR-YREALVPGGRALLT  217 (254)
T ss_dssp             EEECCHH----H-----HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             hhccccc----c-----HHHHHHH-HHHhcCCCcEEEEE
Confidence            9985421    1     2467788 79999999999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.48  E-value=2.6e-13  Score=110.98  Aligned_cols=128  Identities=16%  Similarity=0.215  Sum_probs=99.8

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~  181 (251)
                      ..-|||||||+|..+..+++..+...+++||+++.++..|.+.....    .-++++++.+|+.++... ....+|.|++
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~----~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh----ccccceeeecCHHHHhhhccCCceehhcc
Confidence            34699999999999999988756679999999999999988876544    246899999999886543 3578999999


Q ss_pred             cCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       182 D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      .-++||....  ...+.+.+|++. ++++|+|||.+.+.+.      ..+.+..+...+...
T Consensus       108 ~fPdPw~K~~h~krRl~~~~~l~~-~~~~LkpgG~l~i~TD------~~~Y~~~~le~~~~~  162 (204)
T d1yzha1         108 NFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY  162 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhHHHHHHH-HHHhCCCCcEEEEEEC------CccHHHHHHHHHHHC
Confidence            9999984221  236778999999 7999999999988653      344555555555543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-14  Score=116.66  Aligned_cols=104  Identities=24%  Similarity=0.283  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ....+|||||||+|..+..+++.. ..+|++||+++.+++.|++.++..+    .++++++++|+.++. ...++||+|+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~----~~~~~f~~~d~~~~~-~~~~~fD~I~  132 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIW  132 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc----ccccccccccccccc-cccccccccc
Confidence            345789999999999999987654 3689999999999999999876542    357899999998853 3468999999


Q ss_pred             EcCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-+       ++-.   .++++. +++.|+|||.+++.
T Consensus       133 ~~~~l~-------h~~~~~~~~~l~~-i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         133 IQWVIG-------HLTDQHLAEFLRR-CKGSLRPNGIIVIK  165 (222)
T ss_dssp             EESCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cccccc-------cchhhhhhhHHHH-HHHhcCCcceEEEE
Confidence            875322       2222   368898 79999999988874

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.47  E-value=2.2e-14  Score=120.60  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+++++|||||||+|..+..+++.. ..+|++||+|+.+++.|++.....+   ...++.++++|+........++||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhhcccccccceEE
Confidence            3567899999999999888888763 4689999999999999998765432   34689999999854322245789999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-++...+  .-.-..+++. +.++|+|||++++..
T Consensus        98 ~~~~~l~~~~~~--~~~~~~~l~~-i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEcceeeecCCC--HHHHHHHHHH-HhceeCCCCEEEEEe
Confidence            987542221011  0111368888 799999999998753

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=1.1e-13  Score=117.73  Aligned_cols=121  Identities=20%  Similarity=0.262  Sum_probs=95.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..++.+|||+|||+|.++..+++. .+..+|+++|+++++++.|++++...+   ...++.+...|.....  ....||.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d~~~~~--~~~~~D~  175 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDVDA  175 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEeccccccc--cccceee
Confidence            456799999999999999999885 344699999999999999999987543   2468999999965432  2468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~  243 (251)
                      |++|.++|+           ++++. +.++|||||++++.+  |    ..+.+.++.+.|++. |-
T Consensus       176 V~~d~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         176 LFLDVPDPW-----------NYIDK-CWEALKGGGRFATVC--P----TTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             EEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHSSEE
T ss_pred             eEecCCCHH-----------HHHHH-HHhhcCCCCEEEEEe--C----cccHHHHHHHHHHHCCce
Confidence            999988665           35677 799999999999875  3    245677788888764 43

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.45  E-value=9.7e-14  Score=111.55  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD  177 (251)
                      .++.+|||++||+|+++.+++.+ ++.+|++||.|+++++.+++++...+   ...+++++.+|+.+++..   ...+||
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchhhhhhhcccCCCcc
Confidence            46789999999999999999996 56799999999999999999987543   235899999999998864   456899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~~  220 (251)
                      +|++|||...      .. ..+.+..+. ...|+|+|+++++..
T Consensus       116 lIflDPPY~~------~~-~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         116 LVLLDPPYAK------QE-IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EEEECCCGGG------CC-HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             eEEechhhhh------hH-HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            9999997422      11 134455411 357999999998753

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.5e-13  Score=118.42  Aligned_cols=125  Identities=12%  Similarity=0.205  Sum_probs=92.9

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhccc-------CCCCCCCeEEEEcchHHHHh
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-------EAFSDPRLELVINDARAELE  170 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~-------~~~~~~rv~~~~~D~~~~l~  170 (251)
                      -..++.+|||+|||+|.++..+++. .+..+|+++|+++++++.|++++....       ......++.++++|..++..
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            3456799999999999999999985 344699999999999999999875211       00124689999999876543


Q ss_pred             c-CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          171 S-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       171 ~-~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      . ....||.|++|.++||.           .+.. +.++|||||++++.+  |    ..+.+.++.+.|+..
T Consensus       175 ~~~~~~fD~V~LD~p~P~~-----------~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~  228 (324)
T d2b25a1         175 DIKSLTFDAVALDMLNPHV-----------TLPV-FYPHLKHGGVCAVYV--V----NITQVIELLDGIRTC  228 (324)
T ss_dssp             ------EEEEEECSSSTTT-----------THHH-HGGGEEEEEEEEEEE--S----SHHHHHHHHHHHHHH
T ss_pred             ccCCCCcceEeecCcCHHH-----------HHHH-HHHhccCCCEEEEEe--C----CHHHHHHHHHHHHHc
Confidence            2 24689999999988762           3567 699999999999865  3    245677888888753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=1.8e-13  Score=117.18  Aligned_cols=105  Identities=16%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||||||.|+++.+++++.+ .+|++|++|++.++.|++.....+   ...++.+...|.+++    +++||.|+
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~---l~~~~~~~~~d~~~~----~~~fD~i~  122 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV  122 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhc---cccchhhhhhhhhhh----ccchhhhh
Confidence            4578999999999999999988755 599999999999999999876432   346788998996643    57899999


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +--. .+.  +.   -.-..||+. +++.|||||+++++.
T Consensus       123 si~~~eh~--~~---~~~~~~f~~-i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHF--GH---ENYDDFFKR-CFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGT--CG---GGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             HhhHHHHh--hh---hhHHHHHHH-HHhccCCCceEEEEE
Confidence            8643 322  11   123589999 799999999999875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=3.1e-13  Score=107.46  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh---cCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~---~~~~~fD  177 (251)
                      +.+.+|||+|||+|.++.+++.+ + +++++||+|+++++.+++++..++   ...  +++..|+..++.   ...++||
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~-g-a~vv~vD~~~~a~~~~~~N~~~~~---~~~--~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE-G-WEAVLVEKDPEAVRLLKENVRRTG---LGA--RVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT-T-CEEEEECCCHHHHHHHHHHHHHHT---CCC--EEECSCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEeccccchhhhhhhhc-c-chhhhcccCHHHHhhhhHHHHhhc---ccc--ceeeeehhcccccccccCCccc
Confidence            56789999999999999998886 4 489999999999999999988653   123  455555554442   3457899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEecC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~~  220 (251)
                      +|++|||...  +    + . +.+..++ +..|+|||++++...
T Consensus       113 ~If~DPPY~~--~----~-~-~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         113 VAFMAPPYAM--D----L-A-ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCCTTS--C----T-T-HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eeEEcccccc--C----H-H-HHHHHHHHcCCcCCCeEEEEEec
Confidence            9999997432  1    1 1 2223212 468999999998763

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.43  E-value=7.5e-14  Score=117.80  Aligned_cols=102  Identities=16%  Similarity=0.251  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ....+|||+|||+|.++..++... ..+|++||+++.+++.||+++..      .++++++++|+.++- ..+++||+|+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~~~~-~~~~~fD~I~  163 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETAT-LPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGCC-CCSSCEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc------cccceeEEccccccc-cCCCccceEE
Confidence            356899999999999999877642 25899999999999999988652      357899999987763 2357899999


Q ss_pred             EcCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +...-       .++..   .++++. +++.|+|||.+++.
T Consensus       164 ~~~vl-------~hl~d~d~~~~l~~-~~~~LkpgG~iii~  196 (254)
T d1xtpa_         164 IQWTA-------IYLTDADFVKFFKH-CQQALTPNGYIFFK  196 (254)
T ss_dssp             EESCG-------GGSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeccc-------cccchhhhHHHHHH-HHHhcCCCcEEEEE
Confidence            98542       22322   478999 69999999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=1.7e-13  Score=110.92  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..+.||||||||+|..+..++++.  .+|++||+++.+++.+++.....+    -+++++...|+.+..  .+++||+|+
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~I~  100 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEG----LDNLQTDLVDLNTLT--FDGEYDFIL  100 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEECCTTTCC--CCCCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhcc----ccchhhhheeccccc--ccccccEEE
Confidence            356799999999999999999863  589999999999999998876432    357999999977653  357899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.  -|.  -....+++. +.++|+|||++++..
T Consensus       101 ~~~~~~~--~~~--~~~~~~l~~-~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         101 STVVMMF--LEA--QTIPGLIAN-MQRCTKPGGYNLIVA  134 (198)
T ss_dssp             EESCGGG--SCT--THHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             Eeeeeec--CCH--HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8765322  111  113468888 799999999888754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=1.3e-12  Score=111.06  Aligned_cols=144  Identities=17%  Similarity=0.217  Sum_probs=103.1

Q ss_pred             eeEEEEcCccccccccchhHHHHHHHhHh--hcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534           69 GKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus        69 g~~l~ldg~~q~~~~~~~~y~e~l~~~~~--~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      |..+++|..+-...++.    |.++...+  .......+|||+|||+|.++..+++.+ ..+|+++|+|++++++|+++.
T Consensus        79 ~~~f~v~~~vlIPRpeT----E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~-~~~v~a~Dis~~Al~~A~~Na  153 (271)
T d1nv8a_          79 GLSFLVEEGVFVPRPET----EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFS-DAIVFATDVSSKAVEIARKNA  153 (271)
T ss_dssp             TEEEECCTTSCCCCTTH----HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHS-SCEEEEEESCHHHHHHHHHHH
T ss_pred             eeEEEEecCccCchhhh----hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcc-cceeeechhhhhHHHHHHHHH
Confidence            56677776665555443    33332221  112245689999999999999888765 579999999999999999998


Q ss_pred             hcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC--------CCcccCCcc----HHHHHHHHcccCCCCc
Q 025534          147 VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE--------GGPCYKLYT----KSFYEFVVKPRLNPEG  213 (251)
Q Consensus       147 ~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~--------~~p~~~l~~----~ef~~~~~~~~L~pgG  213 (251)
                      ..++   ...++.++.+|..+.+....++||+|++|||. +..        ..|...|+.    .++|+.++++.|+|||
T Consensus       154 ~~~~---~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G  230 (271)
T d1nv8a_         154 ERHG---VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK  230 (271)
T ss_dssp             HHTT---CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC
T ss_pred             HHcC---CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCC
Confidence            7654   34689999999988776556799999999982 110        122111221    3678776789999999


Q ss_pred             EEEEecC
Q 025534          214 IFVTQAG  220 (251)
Q Consensus       214 ~l~~~~~  220 (251)
                      .+++..+
T Consensus       231 ~l~~Eig  237 (271)
T d1nv8a_         231 IVLMEIG  237 (271)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=4.2e-13  Score=115.37  Aligned_cols=110  Identities=17%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++.+|||||||.|+++.++++..+ .+|++|++|++.++.+++.....+   ...++++...|.+    ..+++||.|
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~---l~~~v~~~~~d~~----~~~~~fD~i  130 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWE----EFDEPVDRI  130 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSC---CSSCEEEEECCGG----GCCCCCSEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhc---cchhhhhhhhccc----ccccccceE
Confidence            35679999999999999999987655 599999999999999998876433   3468999999964    235789999


Q ss_pred             EEcC-CCCCCCCccc---CCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDL-ADPIEGGPCY---KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~-~~~~~~~p~~---~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++-- +.+.. .+..   .-.-+.||+. +.++|||||+++++.
T Consensus       131 ~sie~~eH~~-~~~~~~~~~~~~~~f~~-i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         131 VSLGAFEHFA-DGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EEESCGGGTT-CCSSCCSTTHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             eechhHHhcc-hhhhhhHHHHHHHHHHH-HHHhCCCCCceEEEE
Confidence            9764 33331 1100   0112589999 799999999999876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.41  E-value=1.7e-13  Score=117.02  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+|.+|||||||+|..+..+++.. ...+|+++|+++.+++.|++++...     ..+++++.+|+.+. . .+++||+|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-----~~~~~f~~~d~~~~-~-~~~~fD~v   98 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEI-E-LNDKYDIA   98 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-----SSEEEEEESCTTTC-C-CSSCEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-----cccccccccccccc-c-ccCCceEE
Confidence            568899999999999999998863 3468999999999999999987643     24789999998764 2 34689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...-++...|      ..+++. +.++|||||.+++..
T Consensus        99 ~~~~~l~~~~d~------~~~l~~-~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          99 ICHAFLLHMTTP------ETMLQK-MIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEESCGGGCSSH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEehhhhcCCCH------HHHHHH-HHHHcCcCcEEEEEE
Confidence            998653321122      468888 799999999888643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=1.6e-13  Score=113.35  Aligned_cols=100  Identities=17%  Similarity=0.260  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+++.+|||+|||+|..+..+++. + .+|++||+++.+++.|+++..          ..++.+|+.+. ...+++||+|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~----------~~~~~~~~~~l-~~~~~~fD~i  106 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGV----------KNVVEAKAEDL-PFPSGAFEAV  106 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTC----------SCEEECCTTSC-CSCTTCEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc-c-eEEEEeecccccccccccccc----------ccccccccccc-ccccccccce
Confidence            356789999999999999999886 3 589999999999999998632          13567887663 3346899999


Q ss_pred             EEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++-. ..++...      ..++++. +.++|||||++++..
T Consensus       107 i~~~~~~~~~~d------~~~~l~~-i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         107 LALGDVLSYVEN------KDKAFSE-IRRVLVPDGLLIATV  140 (246)
T ss_dssp             EECSSHHHHCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             eeecchhhhhhh------HHHHHHH-HHhhcCcCcEEEEEE
Confidence            9743 2111112      2468898 799999999999865

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.6e-13  Score=108.93  Aligned_cols=105  Identities=20%  Similarity=0.335  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~  174 (251)
                      .++++||+||+|+|..+.++++. +...+|+.+|+|++..+.|++++...+   ...+++++.+|+.+.+.+     ..+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag---~~~~i~~~~Gda~e~l~~~~~~~~~~  134 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  134 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC---ccceEEEEEeehhhcchhhhhhcccC
Confidence            46899999999999999999875 445799999999999999999997554   357899999999987753     256


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++|....         ...++|+. +.+.|+|||++++.
T Consensus       135 ~fD~ifiD~dk~---------~y~~~~~~-~~~lL~~GGvii~D  168 (219)
T d2avda1         135 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  168 (219)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEEeCCHH---------HHHHHHHH-HHHHhcCCcEEEEe
Confidence            899999996421         13577888 68999999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.39  E-value=4.5e-13  Score=110.50  Aligned_cols=99  Identities=12%  Similarity=0.168  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||||||+|.+++.+++..  .+|++||+|+++++.|++.+.        .+++++.+|+.++.  .+++||+|+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~--~~~~fD~I~   86 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQ--LPRRYDNIV   86 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCC--CSSCEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc--------cccccccccccccc--ccccccccc
Confidence            467899999999999999988753  589999999999999998642        36999999987753  357899999


Q ss_pred             EcCCCCCCCCcccCCcc-HHHHHHHHc-ccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYT-KSFYEFVVK-PRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~-~ef~~~~~~-~~L~pgG~l~~~~  219 (251)
                      +...-       +++.. ..+++. ++ ++|+|||.+++..
T Consensus        87 ~~~vl-------eh~~d~~~~l~~-i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          87 LTHVL-------EHIDDPVALLKR-INDDWLAEGGRLFLVC  119 (225)
T ss_dssp             EESCG-------GGCSSHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             cccee-------EecCCHHHHHHH-HHHHhcCCCceEEEEe
Confidence            86432       12222 467777 66 7899999998764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.38  E-value=9.1e-13  Score=109.31  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=87.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------C
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~  173 (251)
                      .++++||+||+++|..+..+++. +...+|+.+|+|++..+.|++++...+   ..++++++.+|+.+.+.+.      .
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g---~~~~i~~~~g~a~~~L~~l~~~~~~~  134 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH  134 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc---cccceeeeehHHHHHHHHHHhccccC
Confidence            36899999999999999999864 445799999999999999999997553   3469999999999988642      4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ++||+|++|....         ...++|+. +.++|+|||++++.
T Consensus       135 ~~fD~iFiDa~k~---------~y~~~~e~-~~~ll~~gGiii~D  169 (227)
T d1susa1         135 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD  169 (227)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred             CceeEEEeccchh---------hhHHHHHH-HHhhcCCCcEEEEc
Confidence            6899999996421         13578888 68999999998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.38  E-value=1.1e-12  Score=107.57  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  178 (251)
                      .++.+|||||||+|..+..+++..+..+|++||++|.+++.+++....      .+++.++.+|+...-..  ....+|+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~------~~ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc------cCCceEEEeeccCccccccccceEEE
Confidence            456899999999999999999875556999999999999999987653      25899999998764321  2357888


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec-----CCCCCCCChHHHHHHHHHHHhhCCc
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-----GPAGIFSHTEVFSCIYNTLRQVFKC  244 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~-----~~p~~~~~~~~~~~i~~~l~~~F~~  244 (251)
                      |+.|.+.+.        ....+++. +.+.|||||.+++-.     .++  ......++...+.+++-|..
T Consensus       129 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~~~~~~~d~~--~~~~~~~~~~~~~l~~gf~i  188 (209)
T d1nt2a_         129 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMVKARSIDST--AEPEEVFKSVLKEMEGDFKI  188 (209)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTT--SCHHHHHHHHHHHHHTTSEE
T ss_pred             EEecccChh--------hHHHHHHH-HHHHhccCCeEEEEEEccccCCC--CCHHHHHHHHHHHHHcCCEE
Confidence            888865432        13578888 799999999887642     121  12334666777777766653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=9.1e-13  Score=112.93  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++.+|||||||.|+++.++++..+ .+|++|.+|++.++.|++.....+   ...++++..+|.+++    +++||.|
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~~~~----~~~fD~i  131 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRI  131 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhhhcc----cccccce
Confidence            35679999999999999999888765 699999999999999998865433   357999999997543    5789998


Q ss_pred             EEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++--. .+.  +   .-.-..+|+. +.++|+|||+++++.
T Consensus       132 ~si~~~eh~--~---~~~~~~~~~~-~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         132 VSIGAFEHF--G---HERYDAFFSL-AHRLLPADGVMLLHT  166 (285)
T ss_dssp             EEESCGGGT--C---TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             eeehhhhhc--C---chhHHHHHHH-HHhhcCCCCcEEEEE
Confidence            87532 332  1   1123579999 799999999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.37  E-value=2.1e-13  Score=108.74  Aligned_cols=116  Identities=10%  Similarity=0.003  Sum_probs=82.1

Q ss_pred             HhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC--------CCCCCCeEEEEcchHH
Q 025534           96 ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDARA  167 (251)
Q Consensus        96 ~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~--------~~~~~rv~~~~~D~~~  167 (251)
                      +.+..+++.||||+|||+|..+.+++++ + .+|++||+|+.+++.|++..+....        .......+++.+|..+
T Consensus        14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~-G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGKSQDMSWLSGQ-G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHH-C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HHcCCCCCCEEEEecCcCCHHHHHHHHc-C-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            3344567789999999999999999987 4 5999999999999999987542110        0123567888998766


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .-......||+|++....+.. .+   -....+++. +.+.|||||.+++.
T Consensus        92 l~~~~~~~~D~i~~~~~l~~l-~~---~~~~~~~~~-i~~~LkpgG~l~l~  137 (201)
T d1pjza_          92 LTARDIGHCAAFYDRAAMIAL-PA---DMRERYVQH-LEALMPQACSGLLI  137 (201)
T ss_dssp             STHHHHHSEEEEEEESCGGGS-CH---HHHHHHHHH-HHHHSCSEEEEEEE
T ss_pred             cccccccceeEEEEEeeeEec-ch---hhhHHHHHH-HHHhcCCCcEEEEE
Confidence            433334689999986542220 11   112467788 79999999987653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=3.7e-13  Score=113.96  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+|||+|||+|.++..++++. .++|++||+||..++.+++++..++   -..+++++++|++++..  ...||.|+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~---l~~~v~~~~~D~~~~~~--~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK---VEDRMSAYNMDNRDFPG--ENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC---CCceEEEEEcchHHhcc--CCCCCEEE
Confidence            467899999999999999999874 4699999999999999999998875   35689999999998753  46899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++++..          +.+|+.. +.+.|++||++.+..
T Consensus       180 ~~~p~~----------~~~~l~~-a~~~l~~gG~lh~~~  207 (260)
T d2frna1         180 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHN  207 (260)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCCCc----------hHHHHHH-HHhhcCCCCEEEEEe
Confidence            987631          2356777 578899999986654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=1.2e-12  Score=107.48  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..++.+|||||||+|..+..+++. .+..+|+++|+++++++.|++++...+    ..++.++++|+.+.... .++||+
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~----~~n~~~~~~d~~~~~~~-~~~fD~  147 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVPE-FSPYDV  147 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc----ccccccccCchHHcccc-ccchhh
Confidence            356789999999999999988875 334689999999999999999987542    46889999998775432 468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++..-+.  .|          +. +.+.|||||++++-.
T Consensus       148 I~~~~~~~~--~p----------~~-l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         148 IFVTVGVDE--VP----------ET-WFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEECSBBSC--CC----------HH-HHHHEEEEEEEEEEB
T ss_pred             hhhhccHHH--hH----------HH-HHHhcCCCcEEEEEE
Confidence            999864322  22          23 466799999998744

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.3e-12  Score=110.76  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ..++.+|||||||+|..+..+++..+..++++||+++.+++.|++.         .++++++++|+.+. .-.++.||+|
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~---------~~~~~~~~~d~~~l-~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR---------YPQVTFCVASSHRL-PFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH---------CTTSEEEECCTTSC-SBCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc---------cccccceeeehhhc-cCCCCCEEEE
Confidence            4567899999999999999999875557999999999999999875         25789999998764 3346889999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++...      | .      .+++ ++++|||||.+++..
T Consensus       152 ~~~~~------~-~------~~~e-~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         152 IRIYA------P-C------KAEE-LARVVKPGGWVITAT  177 (268)
T ss_dssp             EEESC------C-C------CHHH-HHHHEEEEEEEEEEE
T ss_pred             eecCC------H-H------HHHH-HHHHhCCCcEEEEEe
Confidence            97532      2 1      1466 689999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=107.17  Aligned_cols=107  Identities=24%  Similarity=0.357  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .++.+||+||||+|..+..+++. .+..+|+++|+++++++.|++++...+. .....+++++.+|+..... ....||+
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~-~~~~fD~  153 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  153 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-hhhhhhh
Confidence            35689999999999998888775 3346999999999999999998753210 0123689999999876543 2468999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |+++...+.  .|          +. +.+.|||||++++-.++
T Consensus       154 I~~~~~~~~--ip----------~~-l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         154 IHVGAAAPV--VP----------QA-LIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             EEECSBBSS--CC----------HH-HHHTEEEEEEEEEEESC
T ss_pred             hhhhcchhh--cC----------HH-HHhhcCCCcEEEEEEcc
Confidence            999865332  22          23 46789999999986543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.31  E-value=4.8e-12  Score=104.68  Aligned_cols=98  Identities=20%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++.+||+||||+|.++..+++..  .+|+++|+++++++.|++++..      ..+++++.+|+...... ..+||+|+
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d~~~g~~~-~~pfD~Ii  139 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY------YNNIKLILGDGTLGYEE-EKPYDRVV  139 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT------CSSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred             cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc------ccccccccCchhhcchh-hhhHHHHH
Confidence            466899999999999999888863  6999999999999999987652      36899999998775432 46899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...-+.  .|          +. +.+.|+|||++++-.+
T Consensus       140 v~~a~~~--ip----------~~-l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         140 VWATAPT--LL----------CK-PYEQLKEGGIMILPIG  166 (224)
T ss_dssp             ESSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             hhcchhh--hh----------HH-HHHhcCCCCEEEEEEc
Confidence            9865322  22          23 4567999999987543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.2e-12  Score=104.88  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc-------------CCCCCCCeEEEEcchHH
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-------------EAFSDPRLELVINDARA  167 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-------------~~~~~~rv~~~~~D~~~  167 (251)
                      +++.||||+|||.|..+..+++. + .+||+||+++.+|+.|++..+...             ......+++++++|.++
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~-G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADR-G-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            46789999999999999999986 4 589999999999999987643210             00124689999999988


Q ss_pred             HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ........||+|+.-..-+.. .|   -....+++. +.++|||||.+++.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~-~~---~~r~~~~~~-~~~~LkpgG~~~l~  167 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAI-NP---GDRKCYADT-MFSLLGKKFQYLLC  167 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTS-CG---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEec-cc---hhhHHHHHH-HHhhcCCcceEEEE
Confidence            765556899999976653321 22   123567788 79999999976553

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.30  E-value=1.8e-12  Score=108.84  Aligned_cols=107  Identities=20%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ...++|||||||+|..+..+++..+..+++++|+ |++++.+++++...+   ...+++++.+|+++.   .+.+||+|+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~rv~~~~~D~~~~---~~~~~D~v~  151 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEP---LPRKADAII  151 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh---cccchhhccccchhh---cccchhhee
Confidence            3568999999999999999998766679999998 779999999876433   357999999997653   346799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   -....++++ ++++|||||.+++..
T Consensus       152 ~~~vlh~~-~d---~~~~~~L~~-~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         152 LSFVLLNW-PD---HDAVRILTR-CAEALEPGGRILIHE  185 (253)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             eccccccC-Cc---hhhHHHHHH-HHHhcCCCcEEEEEe
Confidence            87542210 10   012367888 799999999887753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.30  E-value=5.8e-12  Score=100.96  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=97.9

Q ss_pred             cEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHH
Q 025534           59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV  138 (251)
Q Consensus        59 ~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~v  138 (251)
                      .++|+.....||.|..-....+ .|....-.|++... +.......+|||+.+|+|+++.+++.+ ++.+|+.||.|+.+
T Consensus         2 ~mrIi~G~~kg~~l~~~~~~~~-RPt~~~vrealFn~-l~~~~~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a   78 (183)
T d2ifta1           2 EVRIIAGLWRGRKLPVLNSEGL-RPTGDRVKETLFNW-LMPYIHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTV   78 (183)
T ss_dssp             EEECCSSTTTTCEEECC----------CHHHHHHHHH-HHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHH
T ss_pred             ceEEEccccCCCEecCCCCCCc-CcCcHHHHHHHHHH-hhhhcccceEeecccCccceeeeeeee-cceeeEEeecccch
Confidence            4555555555776643221111 11111223444322 111125679999999999999999986 57899999999999


Q ss_pred             HHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcE
Q 025534          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGI  214 (251)
Q Consensus       139 i~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~  214 (251)
                      ++..++++...+  ..+....++..|+.+++...  ..+||+|++|||...  .    + ..+.++. +  ...|+++|+
T Consensus        79 ~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~--~----~-~~~~l~~-l~~~~~L~~~~l  148 (183)
T d2ifta1          79 ANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF--N----L-AEQAISL-LCENNWLKPNAL  148 (183)
T ss_dssp             HHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS--C----H-HHHHHHH-HHHTTCEEEEEE
T ss_pred             hhhHhhHHhhhc--ccccccccccccccccccccccCCcccEEEechhHhh--h----h-HHHHHHH-HHHhCCcCCCcE
Confidence            999999987442  13457889999999998753  457999999998532  1    1 2234444 3  468999999


Q ss_pred             EEEec
Q 025534          215 FVTQA  219 (251)
Q Consensus       215 l~~~~  219 (251)
                      ++++.
T Consensus       149 iiiE~  153 (183)
T d2ifta1         149 IYVET  153 (183)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=9e-12  Score=103.42  Aligned_cols=128  Identities=17%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC--ceeE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~--~fD~  178 (251)
                      .++.+||+||||+|..+..+++..+...|++||++|.+++.+++...      ..+++..+.+|++....-...  .+|+
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~------~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA------ERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT------TCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh------hhcccceEEEeeccCcccccccceeEE
Confidence            45689999999999999999997555799999999999999988644      346888999998876543333  4555


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec--CCCCC-CCChHHHHHHHHHHHhh-CC
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV-FK  243 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~--~~p~~-~~~~~~~~~i~~~l~~~-F~  243 (251)
                      |+.+...+.  .      ...++.. +++.|||||.+++..  .+... ......+.++.+.|++. |.
T Consensus       147 i~~~~~~~~--~------~~~~l~~-~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~  206 (230)
T d1g8sa_         147 IYEDVAQPN--Q------AEILIKN-AKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFK  206 (230)
T ss_dssp             EEECCCSTT--H------HHHHHHH-HHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEE
T ss_pred             eeccccchH--H------HHHHHHH-HHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCE
Confidence            655544321  1      2467888 799999999877642  11110 12234667777778765 53

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=8.2e-12  Score=102.58  Aligned_cols=107  Identities=8%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  174 (251)
                      .+|++||+||+|.|..+..+++. ++..+|+++|+++++++.|++++...+   ...+++++.+|+.+.+...     .+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g---l~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC---CCccceeeeccccccccchhhccccc
Confidence            36789999999999999999875 345799999999999999999987543   3468999999999987542     36


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +||+|++|....       .......+.. ..++|+|||++++.
T Consensus       132 ~~D~ifiD~~~~-------~~~~~~~l~~-~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         132 TLDMVFLDHWKD-------RYLPDTLLLE-KCGLLRKGTVLLAD  167 (214)
T ss_dssp             CEEEEEECSCGG-------GHHHHHHHHH-HTTCEEEEEEEEES
T ss_pred             ccceeeeccccc-------ccccHHHHHH-HhCccCCCcEEEEe
Confidence            799999994311       0111123444 47899999998874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=8.3e-12  Score=108.63  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=79.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||||||+|.++..++++ ++.+|+++|.++ +++.|++....++   ...+++++.+|..+. ...+++||+|++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~---~~~~i~~i~~~~~~l-~~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC---ccccceEEEeehhhc-cCcccceeEEEE
Confidence            5689999999999999998886 457999999997 5677887766443   357899999998765 334579999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      .......  . ..-.-..++.. ..+.|||||+++
T Consensus       112 e~~~~~~--~-~e~~~~~~~~a-~~r~LkpgG~ii  142 (328)
T d1g6q1_         112 EWMGYFL--L-YESMMDTVLYA-RDHYLVEGGLIF  142 (328)
T ss_dssp             CCCBTTB--S-TTCCHHHHHHH-HHHHEEEEEEEE
T ss_pred             Eecceee--c-cchhHHHHHHH-HHhccCCCeEEE
Confidence            8764321  1 11223456666 689999999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=3.3e-12  Score=109.19  Aligned_cols=114  Identities=8%  Similarity=0.061  Sum_probs=76.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      ..++|||||||+|..+..+++. + .+|++||+|+.|++.|+++...........+..+...|....-..  ..++||+|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~-g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc-C-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            4679999999999999999986 4 589999999999999998764322100011344555565443222  24789999


Q ss_pred             EEcC--CCCCCCCcccC-CccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDL--ADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~--~~~~~~~p~~~-l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ++-.  ..+.. .+... -....+++. ++++|||||+|++..
T Consensus       134 ~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         134 ICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH  174 (292)
T ss_dssp             EECSSCGGGSC-CTTSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEecCchhhcC-CcccChHHHHHHHHH-HHHHcCcCcEEEEee
Confidence            9743  22210 11000 112458898 799999999999854

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.4e-11  Score=100.17  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .++++|||+|||+|.++.+++.. +..+|++||+|+.+++.+++++..+     ..+.+++.+|+..+    .++||+|+
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~-----~~~~~~~~~d~~~~----~~~fD~Vi  114 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIVI  114 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHc-----CCCceEEECchhhh----CCcCcEEE
Confidence            46789999999999999988876 4469999999999999999997754     25789999997664    57899999


Q ss_pred             EcCCCC
Q 025534          181 GDLADP  186 (251)
Q Consensus       181 ~D~~~~  186 (251)
                      +|||..
T Consensus       115 ~nPP~~  120 (201)
T d1wy7a1         115 MNPPFG  120 (201)
T ss_dssp             ECCCCS
T ss_pred             EcCccc
Confidence            999853

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=1.2e-11  Score=100.28  Aligned_cols=77  Identities=19%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             hHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC
Q 025534           95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (251)
Q Consensus        95 ~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~  174 (251)
                      +.......+++|||+|||+|.++..++.. +..+|++||+|+.+++.|+++.         ++++++.+|+.+    .++
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~---------~~~~~~~~D~~~----l~~  106 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---------GGVNFMVADVSE----ISG  106 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---------TTSEEEECCGGG----CCC
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc---------ccccEEEEehhh----cCC
Confidence            33333446899999999999999888876 4578999999999999999874         468999999755    357


Q ss_pred             ceeEEEEcCCC
Q 025534          175 SYDVIIGDLAD  185 (251)
Q Consensus       175 ~fD~Ii~D~~~  185 (251)
                      +||+|++|||.
T Consensus       107 ~fD~Vi~NPPf  117 (197)
T d1ne2a_         107 KYDTWIMNPPF  117 (197)
T ss_dssp             CEEEEEECCCC
T ss_pred             cceEEEeCccc
Confidence            89999999874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=106.89  Aligned_cols=119  Identities=17%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             hHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH
Q 025534           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (251)
Q Consensus        87 ~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~  166 (251)
                      .|.+++....-  ..++++|||||||+|.++..+++. ++.+|+++|.++.+...++ ....++   ...+++++.+|..
T Consensus        22 ~y~~ai~~~~~--~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~-~~~~~~---~~~~i~~~~~~~~   94 (311)
T d2fyta1          22 SYRDFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMD-IIRLNK---LEDTITLIKGKIE   94 (311)
T ss_dssp             HHHHHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHH-HHHHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhccc--cCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHH-HHHHhC---CCccceEEEeeHH
Confidence            35555543211  135689999999999999999986 4579999999999876444 333322   3578999999987


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +. ....++||+|+++......  . ....-..+... ..+.|+|||+++.
T Consensus        95 ~l-~~~~~~~D~Ivse~~~~~~--~-~e~~~~~~~~a-~~~~Lkp~G~iip  140 (311)
T d2fyta1          95 EV-HLPVEKVDVIISEWMGYFL--L-FESMLDSVLYA-KNKYLAKGGSVYP  140 (311)
T ss_dssp             TS-CCSCSCEEEEEECCCBTTB--T-TTCHHHHHHHH-HHHHEEEEEEEES
T ss_pred             Hh-cCccccceEEEEeeeeeec--c-cccccHHHHHH-HHhcCCCCcEEec
Confidence            75 3345799999998764431  1 11222455555 5789999999873

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.2e-11  Score=107.22  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=78.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++++|||||||+|.++..+++. ++.+|++||.++.+ ..+++....++   ...+++++.+|..+. ....++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~---~~~~v~~~~~~~~~~-~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhC---CccccceEeccHHHc-ccccceeEEEee
Confidence            5688999999999999999986 45789999999865 55555554443   346899999998774 334579999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      +.....   ....-.-.+++.. +.+.|+|||+++-
T Consensus       107 ~~~~~~---l~~e~~~~~~l~~-~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYC---LFYESMLNTVLHA-RDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBT---BTBTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             eeeeee---eccHHHHHHHHHH-HHhcCCCCeEEEe
Confidence            876432   1112223567777 6899999999873

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=3.6e-12  Score=103.19  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +..+|||||||+|.++..+.      ++++||+++.+++.|++.           +++++++|+.+. ...+++||+|++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-~~~~~~fD~I~~   97 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALM   97 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------cccccccccccc-cccccccccccc
Confidence            34589999999999887752      468999999999999873           578999998764 334578999999


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...-++...|      ..++++ ++++|+|||.+++..
T Consensus        98 ~~~l~h~~d~------~~~l~~-~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          98 VTTICFVDDP------ERALKE-AYRILKKGGYLIVGI  128 (208)
T ss_dssp             ESCGGGSSCH------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cccccccccc------ccchhh-hhhcCCCCceEEEEe
Confidence            7542221122      468898 799999999988765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-11  Score=102.96  Aligned_cols=108  Identities=12%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             CeEEEEecCchHHHHHHHhc-----CC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----cC
Q 025534          104 KTIFIMGGGEGSTAREILRH-----KT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----SR  172 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~-----~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-----~~  172 (251)
                      .+|||||||+|.++..+++.     ++ ..++++||+++.+++.+++.+.... ....-++.+...++.++..     ..
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccCC
Confidence            37999999999987776552     22 2368999999999999999875321 1112244566777666532     13


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++||+|++-..-++...|      ..+++. +++.|+|||.+++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d~------~~~l~~-l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDI------PATLKF-FHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCH------HHHHHH-HHhhCCCCCEEEEEE
Confidence            5789999997543221122      478898 799999999887765

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=3.9e-11  Score=99.27  Aligned_cols=128  Identities=18%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD  177 (251)
                      .++.+||++|||+|.++..+++. .+..+|++||+++.+++.+++....      .+++..+..|+...-.  .....+|
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------cCCceEEEEECCCcccccccccceE
Confidence            35689999999999999999986 3457999999999999999987642      3578888888765322  2347899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec--CCCCCCCC-hHHHHHHHHHHHhhCC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGIFSH-TEVFSCIYNTLRQVFK  243 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~--~~p~~~~~-~~~~~~i~~~l~~~F~  243 (251)
                      +|++|.+.+.        ....+++. +++.|+|||.+++-.  .+...... ...++.+.+.+++-|.
T Consensus       146 ~i~~d~~~~~--------~~~~~l~~-~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~  205 (227)
T d1g8aa_         146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFE  205 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSE
T ss_pred             EEEEEccccc--------hHHHHHHH-HHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCE
Confidence            9999976542        13468888 799999999887642  22111122 3345555555555564

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.21  E-value=1.9e-11  Score=100.40  Aligned_cols=101  Identities=26%  Similarity=0.306  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+||+||||+|..+..+++..+ .+|+++|+++.+++.|++++...+    -.+++++++|+.+-.. ...+||.|+
T Consensus        77 ~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g----~~nv~~~~gd~~~g~~-~~~pfD~Ii  150 (215)
T d1jg1a_          77 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFP-PKAPYDVII  150 (215)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcC----CceeEEEECccccCCc-ccCcceeEE
Confidence            4568999999999999998887644 579999999999999999987542    4789999999987543 247899999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +...-+.  .|          .. +.+.|+|||++++-.+
T Consensus       151 v~~a~~~--ip----------~~-l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         151 VTAGAPK--IP----------EP-LIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             ECSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             eeccccc--CC----------HH-HHHhcCCCCEEEEEEc
Confidence            9865332  33          12 3567999999987543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.17  E-value=2.5e-11  Score=102.08  Aligned_cols=107  Identities=12%  Similarity=0.093  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ...++|||||||+|.++..+++..+..+++++|+ |++++.+++++...+   ..+|++++.+|.++.   .+..||+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~---~~~ri~~~~~d~~~~---~p~~~D~v~  152 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKP---LPVTADVVL  152 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSCCEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC---Ccceeeeeeeecccc---ccccchhhh
Confidence            3458999999999999999998766679999998 889999999876433   357899999997653   345799999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +...-+.. ..   -....++++ +++.|||||++++..
T Consensus       153 ~~~vLh~~-~d---~~~~~lL~~-i~~~LkpgG~llI~d  186 (256)
T d1qzza2         153 LSFVLLNW-SD---EDALTILRG-CVRALEPGGRLLVLD  186 (256)
T ss_dssp             EESCGGGS-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cccccccc-Cc---HHHHHHHHH-HHhhcCCcceeEEEE
Confidence            87542210 11   012467888 799999999888753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.9e-11  Score=99.14  Aligned_cols=81  Identities=11%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-----CCCce
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKESY  176 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~~f  176 (251)
                      +..++||||||+|.++..+++..+..+++++|+|+++++.|+++...++   ...++.+++.+....+..     ..++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~---l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC---CCcceeeeeeccHHhhhhhhhhcccCce
Confidence            3468999999999999988876445799999999999999999988764   357899988765544321     24689


Q ss_pred             eEEEEcCCC
Q 025534          177 DVIIGDLAD  185 (251)
Q Consensus       177 D~Ii~D~~~  185 (251)
                      |+|++|||.
T Consensus       138 D~ivsNPPY  146 (250)
T d2h00a1         138 DFCMCNPPF  146 (250)
T ss_dssp             SEEEECCCC
T ss_pred             eEEEecCcc
Confidence            999999984

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=3.3e-11  Score=99.49  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcC------CCcEEEEEECChHHHHHHHhchhccc-CCCCCCCeEEEEcchHHHHhcCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHK------TVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRK  173 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~------~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~~~~~D~~~~l~~~~  173 (251)
                      .+..+||+||||+|..+..+++.-      ...+|++||+++++++.|++++.... ......++.++.+|+.+.... .
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-~  157 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  157 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-c
Confidence            356899999999999887776641      12489999999999999998764210 000135899999999875433 4


Q ss_pred             CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+||.|+++..-+.  .|          +. +.+.|+|||++++-.+
T Consensus       158 ~~fD~Iiv~~a~~~--~p----------~~-l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         158 APYNAIHVGAAAPD--TP----------TE-LINQLASGGRLIVPVG  191 (223)
T ss_dssp             CSEEEEEECSCBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred             cceeeEEEEeechh--ch----------HH-HHHhcCCCcEEEEEEe
Confidence            68999999875332  23          23 4678999999987554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.8e-10  Score=96.91  Aligned_cols=110  Identities=11%  Similarity=0.018  Sum_probs=78.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCCCCCCeEEEEcchHHHHhc-CCC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAELES-RKE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~~~rv~~~~~D~~~~l~~-~~~  174 (251)
                      .+..+|||||||+|.++..+++..+..++++||+++.+++.|++.....     .-.....+++++++|+.+.--. .-.
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            4568899999999999999988766678999999999999998764311     0012356899999998654211 112


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ..|+|+++.....   +.    ....+.+ +.+.|||||++++.
T Consensus       230 ~advi~~~~~~f~---~~----~~~~l~e-~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         230 NTSVIFVNNFAFG---PE----VDHQLKE-RFANMKEGGRIVSS  265 (328)
T ss_dssp             HCSEEEECCTTTC---HH----HHHHHHH-HHTTCCTTCEEEES
T ss_pred             cceEEEEcceecc---hH----HHHHHHH-HHHhCCCCcEEEEe
Confidence            3689998755321   11    1356677 68999999999874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.7e-11  Score=99.29  Aligned_cols=115  Identities=16%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCC------------------------
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP------------------------  156 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~------------------------  156 (251)
                      .++.+|||||||+|..+..+++. ...+|+++|+++.+++.|+++...........                        
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            34678999999999887766654 34689999999999999999875332100000                        


Q ss_pred             -Ce-EEEEcchH--HHH-hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          157 -RL-ELVINDAR--AEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       157 -rv-~~~~~D~~--~~l-~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                       ++ .....+..  ... ....++||+|++...-+.  .+...-.-..+++. +.++|||||.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~--~~~~~~~~~~~l~~-i~~~LkpGG~li~~~  193 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC--ACCSLDAYRAALCN-LASLLKPGGHLVTTV  193 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHH--hcccHHHHHHHHHH-HHhccCCCcEEEEEE
Confidence             00 00000000  000 112468999998643111  00000112357788 799999999988753

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.92  E-value=1.9e-09  Score=95.19  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-----------CCCCCeEEEEcchHHHHh
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------FSDPRLELVINDARAELE  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-----------~~~~rv~~~~~D~~~~l~  170 (251)
                      ++.+|||..+|+|..+...++..+..+|+++|+|+..++++++++.+|+..           ....++.+.+.|+..++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            678999999999999886555445679999999999999999999876421           012357899999999988


Q ss_pred             cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ...+.||+|.+||+.    .|      ..|++. +.+.++.||++.+-.
T Consensus       125 ~~~~~fDvIDiDPfG----s~------~pflds-Ai~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDPFG----SP------MEFLDT-ALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCCCC----Cc------HHHHHH-HHHHhccCCEEEEEe
Confidence            777899999999873    23      368888 678899999998754

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=5.7e-09  Score=83.83  Aligned_cols=113  Identities=27%  Similarity=0.288  Sum_probs=83.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---HhcC-CCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l~~~-~~~f  176 (251)
                      .+...+||++||+|+.+..+++..+..+|+++|.|+++++.|++.+...     ..|++++++++.+.   +... .+++
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~~r~~~~~~~f~~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREADFLLKTLGIEKV   96 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----cccccchhHHHhhHHHHHHHcCCCCc
Confidence            4568999999999999999998645579999999999999999987643     36899999886553   3332 4789


Q ss_pred             eEEEEcCCCCC--CCCc-ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPI--EGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~--~~~p-~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |.|+.|.--..  -..+ .+.-+..+.+.. ..+.|+|||.+++-.
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~-a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKK-AEDLLNPGGRIVVIS  141 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHH-GGGGEEEEEEEEEEE
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHH-HHHhcCCCCeeeeec
Confidence            99999964210  0011 011223567777 689999999998754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=8.2e-09  Score=91.76  Aligned_cols=110  Identities=11%  Similarity=0.026  Sum_probs=72.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc-----CCCCCCCeEE-EEcchH--HHHhcC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAFSDPRLEL-VINDAR--AELESR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~~~~~~rv~~-~~~D~~--~~l~~~  172 (251)
                      .+..+|||||||.|.++..+++..+.++++|||+++.+++.|++.....+     -......+.+ ..+|..  .+....
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            45678999999999999999887566799999999999999998653210     0011223333 233332  112111


Q ss_pred             CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      -...|+|+++....   .+.    ....+.+ +.+.|||||++++.
T Consensus       295 ~~~adVV~inn~~f---~~~----l~~~L~e-i~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLF---DED----LNKKVEK-ILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTC---CHH----HHHHHHH-HHTTCCTTCEEEES
T ss_pred             cccceEEEEecccC---chH----HHHHHHH-HHHhcCCCcEEEEe
Confidence            24689999875432   121    2356777 68999999998863

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.9e-10  Score=94.88  Aligned_cols=114  Identities=14%  Similarity=0.077  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCC-------------------------
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-------------------------  155 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-------------------------  155 (251)
                      ..+.+|||||||+|..+...+.. ...+|+++|+++.+++.+++++......++-                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            35789999999999776544433 2368999999999999999886532211110                         


Q ss_pred             CC-eEEEEcchHH-----HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          156 PR-LELVINDARA-----ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       156 ~r-v~~~~~D~~~-----~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .. ..+...|...     ......++||+|++-..-+.  .+...-.-..+++. +.++|||||.|++.
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~--i~~~~~~~~~~l~~-~~~~LkPGG~li~~  197 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VSPDLASFQRALDH-ITTLLRPGGHLLLI  197 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHH--HccCHHHHHHHHHH-HHHHcCCCCEEEEe
Confidence            00 1122223211     00112357999998654211  00000001356777 69999999999864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.73  E-value=3e-08  Score=81.98  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=61.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+||+||+|+|.++..+++..  .+|++||+|+.+++.+++.+.      ..++++++++|+.++-- .......|+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~------~~~n~~i~~~D~l~~~~-~~~~~~~vv   90 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV------DHDNFQVLNKDILQFKF-PKNQSYKIF   90 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT------TCCSEEEECCCGGGCCC-CSSCCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh------cccchhhhhhhhhhccc-cccccceee
Confidence            457899999999999999999863  689999999999999998764      24799999999987621 223345678


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      .+.|.
T Consensus        91 ~NLPY   95 (235)
T d1qama_          91 GNIPY   95 (235)
T ss_dssp             EECCG
T ss_pred             eeehh
Confidence            88764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=2.1e-08  Score=86.38  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~  175 (251)
                      .++.+|||.|||+|+++..+.++     ....+++++|+|+.++++|+.+.....     ....+.++|....  ...++
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~--~~~~~  188 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLAN--LLVDP  188 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSC--CCCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-----hhhhhhccccccc--ccccc
Confidence            34578999999999998887642     223479999999999999998876542     4567888885432  23578


Q ss_pred             eeEEEEcCCCCCC-----------C-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIE-----------G-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~-----------~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      ||+|++|||....           . .........-|++. +.+.|+|||++++-.
T Consensus       189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~~I~  243 (328)
T d2f8la1         189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLV  243 (328)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHH-HHHhcCCCCceEEEe
Confidence            9999999984210           0 00001112347888 689999999876544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=6.4e-08  Score=84.23  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~  178 (251)
                      ...+|||+.||.|.++..|++.  ..+|++||+++..++.|+++...++    -.+++++.+|..+.+...   ..+||+
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~----i~n~~~~~~~~~~~~~~~~~~~~~~d~  285 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFDK  285 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred             CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcc----cccceeeecchhhhhhhhhhhhccCce
Confidence            4678999999999999999885  3699999999999999999988774    468999999998876432   467999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++|||-.   +.      .+..+. +. .++|.-++.+-+
T Consensus       286 vilDPPR~---G~------~~~~~~-l~-~~~~~~ivYVSC  315 (358)
T d1uwva2         286 VLLDPARA---GA------AGVMQQ-II-KLEPIRIVYVSC  315 (358)
T ss_dssp             EEECCCTT---CC------HHHHHH-HH-HHCCSEEEEEES
T ss_pred             EEeCCCCc---cH------HHHHHH-HH-HcCCCEEEEEeC
Confidence            99999853   21      245666 33 356766666654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.49  E-value=1.2e-07  Score=76.37  Aligned_cols=125  Identities=20%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ..+++.+|||.|||+|.++..+.+. .....+.++|+|+..++.             ..+..++++|.....  ...+||
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~fd   80 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-------------PPWAEGILADFLLWE--PGEAFD   80 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-------------CTTEEEEESCGGGCC--CSSCEE
T ss_pred             CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-------------cccceeeeeehhccc--cccccc
Confidence            3456789999999999998877653 445689999999865432             235678888866542  357899


Q ss_pred             EEEEcCCCCCC----CCcc-------------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHH
Q 025534          178 VIIGDLADPIE----GGPC-------------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (251)
Q Consensus       178 ~Ii~D~~~~~~----~~p~-------------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i  234 (251)
                      +|+.+++....    ..+.                   ..-....|++. ..+.|+|||.+++-...  .+......+.+
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-al~~lk~~G~~~~I~p~--~~l~~~~~~~l  157 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVPA--TWLVLEDFALL  157 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEEG--GGGTCGGGHHH
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHH-HHHhcccCCceEEEEee--eeccCcchHHH
Confidence            99999973210    0000                   00012457777 67899999988765422  13333333444


Q ss_pred             HHHHHhh
Q 025534          235 YNTLRQV  241 (251)
Q Consensus       235 ~~~l~~~  241 (251)
                      .+.|.+.
T Consensus       158 R~~l~~~  164 (223)
T d2ih2a1         158 REFLARE  164 (223)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            4444443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.46  E-value=1.2e-08  Score=84.82  Aligned_cols=77  Identities=16%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+||+||+|+|.++..|++..  .+|++||+|+++++.+++.++      ..++++++++|+.++ .-....++.|+
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~------~~~n~~ii~~D~l~~-~~~~~~~~~vv   98 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQF-QFPNKQRYKIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTT-TCCCSSEEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhh------hccchhhhhhhhhcc-ccccceeeeEe
Confidence            345789999999999999999873  599999999999998887664      246899999999875 33346778889


Q ss_pred             EcCCCC
Q 025534          181 GDLADP  186 (251)
Q Consensus       181 ~D~~~~  186 (251)
                      .+.|..
T Consensus        99 ~NLPY~  104 (245)
T d1yuba_          99 GNIPYH  104 (245)
T ss_dssp             EECCSS
T ss_pred             eeeehh
Confidence            998743

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.40  E-value=1e-07  Score=79.10  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ...++|||||||+|.++..+++..+..++++.|+ |++++.+.          ..+|++++.+|.++.   . ...|+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~ri~~~~gd~~~~---~-p~~D~~~  144 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP----------PLSGIEHVGGDMFAS---V-PQGDAMI  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CCTTEEEEECCTTTC---C-CCEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC----------CCCCeEEecCCcccc---c-ccceEEE
Confidence            3458999999999999999988766679999998 56654211          347999999997643   2 3569988


Q ss_pred             EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-.. +.+  ..   -.....++. +++.|+|||.+++..
T Consensus       145 l~~vLh~~--~d---e~~~~iL~~-~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         145 LKAVCHNW--SD---EKCIEFLSN-CHKALSPNGKVIIVE  178 (244)
T ss_dssp             EESSGGGS--CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EehhhhhC--CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8643 222  11   112467888 699999999887753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=2.8e-06  Score=71.62  Aligned_cols=137  Identities=17%  Similarity=0.095  Sum_probs=89.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      ...+.+|||+++|.|+=+..++.......|+++|+++.=++..++++...+    .+.+.+...|....-....++||.|
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g----~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc----ccceeeeccccccchhcccccccEE
Confidence            345689999999999988777765444789999999999999998876442    2345555555443222335789999


Q ss_pred             EEcCCCCCC----CCcc-------c---C--CccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534          180 IGDLADPIE----GGPC-------Y---K--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (251)
Q Consensus       180 i~D~~~~~~----~~p~-------~---~--l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~  243 (251)
                      ++|+|....    ..|.       .   .  -...+.+.. +.+.|+|||.++--+++.   . ++....+++.+-+.++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lk~gG~lvYsTCS~---~-~~ENE~vv~~~l~~~~  250 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCSV---L-PEENSLQIKAFLQRTA  250 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESCC---C-GGGTHHHHHHHHHHCT
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHH-HHHhcCCCceEEEeeecC---c-hhhCHHHHHHHHHhCC
Confidence            999984321    1120       0   0  012456777 678999999998766543   2 3344455555544455


Q ss_pred             ce
Q 025534          244 CG  245 (251)
Q Consensus       244 ~v  245 (251)
                      +.
T Consensus       251 ~~  252 (284)
T d1sqga2         251 DA  252 (284)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.29  E-value=3.7e-07  Score=75.57  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ..++|||||||+|..+..+++..+..++++.|+ |++++.+.          ..+|++++.+|.++-    ...+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~rv~~~~gD~f~~----~p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS----------GSNNLTYVGGDMFTS----IPNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CBTTEEEEECCTTTC----CCCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc----------ccCceEEEecCcccC----CCCCcEEEE
Confidence            347899999999999999988766679999999 66654322          247999999997652    246899998


Q ss_pred             cCC-CCCCCCcccCCccHHHHHHHHcccCCCC---cEEEEe
Q 025534          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVTQ  218 (251)
Q Consensus       182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pg---G~l~~~  218 (251)
                      -.. +.|.  .   -.....++. +++.|+||   |++++.
T Consensus       145 ~~vLHdw~--d---~~~~~iL~~-~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         145 KYILHNWT--D---KDCLRILKK-CKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             ESCGGGSC--H---HHHHHHHHH-HHHHHSGGGCCCEEEEE
T ss_pred             EeecccCC--h---HHHHHHHHH-HHHHcCcccCCcEEEEE
Confidence            654 2221  1   113467888 69999998   655554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=8e-07  Score=74.88  Aligned_cols=77  Identities=18%  Similarity=0.361  Sum_probs=62.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .....||+||+|.|+++..+++..  .+|++||+|+.+++..++.+....   ...+++++.+|+.++   .-..++.|+
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~---~~~~~~~i~~D~l~~---~~~~~~~vV   91 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   91 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhc---cccchhhhHHHHhhh---hhhhhhhhh
Confidence            346789999999999999999973  599999999999999998775321   246899999998765   224577899


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      .+.|.
T Consensus        92 ~NLPY   96 (278)
T d1zq9a1          92 ANLPY   96 (278)
T ss_dssp             EECCG
T ss_pred             cchHH
Confidence            98763

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.26  E-value=1.3e-06  Score=72.28  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCC-C---CCCCeEEEEcchHHHHhcCCCcee
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEA-F---SDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~-~---~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      +.+|||+-+|.|.-+..++...  .+|++||-+|.+..+.++.+... ... .   .-.|++++++|+.+|+.+..+.||
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            3589999999999999999873  58999999999998888765321 100 0   013899999999999987778899


Q ss_pred             EEEEcCCCCC
Q 025534          178 VIIGDLADPI  187 (251)
Q Consensus       178 ~Ii~D~~~~~  187 (251)
                      +|++||..|.
T Consensus       167 vIYlDPMFp~  176 (250)
T d2oyra1         167 VVYLDPMFPH  176 (250)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9999997654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.25  E-value=1.1e-06  Score=72.22  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCCeEEEEecCchHHHHHHHh----cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhc-CCC
Q 025534          102 NPKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKE  174 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~-~~~  174 (251)
                      +|++||+||++.|+.+..++.    .....+|+++|+++.......     .    ..++++++.+|..+  .+.. ...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~----~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S----DMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G----GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----c----cccceeeeecccccHHHHHHHHhc
Confidence            689999999999987765543    233479999999985432211     1    34789999998643  3333 235


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .+|+|++|..+..  ..  .+  .+ + . ....|++||.+++.-.
T Consensus       151 ~~dlIfID~~H~~--~~--v~--~~-~-~-~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         151 AHPLIFIDNAHAN--TF--NI--MK-W-A-VDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSEEEEESSCSS--HH--HH--HH-H-H-HHHTCCTTCEEEECSC
T ss_pred             CCCEEEEcCCcch--HH--HH--HH-H-H-HhcccCcCCEEEEEcC
Confidence            6899999965321  10  11  12 2 2 3468999999998654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=5.1e-07  Score=75.10  Aligned_cols=76  Identities=13%  Similarity=0.244  Sum_probs=59.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-----HhcCCCc
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LESRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-----l~~~~~~  175 (251)
                      .+...||+||+|.|.++..|++..  .+|++||+|+.+++..++.+.      ..++++++.+|+.++     ....+++
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~~~~ii~~D~l~~~~~~~~~~~~~~   91 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFGELAEKMGQP   91 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh------hccchhHHhhhhhhhcccccccccCCC
Confidence            356789999999999999999863  689999999999999988654      236899999999864     1112233


Q ss_pred             eeEEEEcCCC
Q 025534          176 YDVIIGDLAD  185 (251)
Q Consensus       176 fD~Ii~D~~~  185 (251)
                      | .|+.|.|.
T Consensus        92 ~-~vvgNlPY  100 (252)
T d1qyra_          92 L-RVFGNLPY  100 (252)
T ss_dssp             E-EEEEECCT
T ss_pred             e-EEEecchH
Confidence            4 67778764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=2.8e-06  Score=67.50  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             CCCCeEEEEecCchHHH----HHHHhc----CCCcEEEEEECChHHHHHHHhc------------------hhcccCCCC
Q 025534          101 PNPKTIFIMGGGEGSTA----REILRH----KTVEKVVMCDIDEEVVEFCKSY------------------LVVNKEAFS  154 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~----~~l~~~----~~~~~v~~VEid~~vi~~a~~~------------------~~~~~~~~~  154 (251)
                      .++-||+..|||+|--+    ..+...    ...-+|++.|+|+.+++.|++-                  |........
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            45679999999999743    333321    1123799999999999999852                  111100000


Q ss_pred             ---------CCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          155 ---------DPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       155 ---------~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                               ...+++...+.........++||+|+|--- ...  .+   -...+.++. +.++|+|||.|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf--~~---~~~~~vl~~-l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF--DK---TTQEDILRR-FVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS--CH---HHHHHHHHH-HGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence                     001122222211110012367999999632 111  11   112467888 79999999998864

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=6.1e-06  Score=66.38  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++.+++|+|+|+|.=+.-++-..+..+++.||.+..=+...++-....    .-.+++++++.+.++.  ...+||+|++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~~~--~~~~fD~V~s  138 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc----CCcceeeeccchhhhc--cccccceehh
Confidence            467999999999975544443334579999999999999888765433    2358999999988753  3468999998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      -++.+.          ..+++. +...++++|.++..-+.
T Consensus       139 RA~~~~----------~~ll~~-~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         139 RAFASL----------NDMVSW-CHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             SCSSSH----------HHHHHH-HTTSEEEEEEEEEEESS
T ss_pred             hhhcCH----------HHHHHH-HHHhcCCCcEEEEECCC
Confidence            876321          356776 68999999999987654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.2e-05  Score=66.24  Aligned_cols=134  Identities=14%  Similarity=0.038  Sum_probs=86.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD  177 (251)
                      ..+.+|||+++|.|+=+.+++.. .+..+|+++|+++.=++..++++...+    -.++++...|+..+-...  .++||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g----~~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC----ccceeeeehhhhhhcccccccceee
Confidence            34678999999999977766653 334689999999999999999886542    367999999987653321  26799


Q ss_pred             EEEEcCCCCCCC----Ccc-------c-----CC--ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534          178 VIIGDLADPIEG----GPC-------Y-----KL--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (251)
Q Consensus       178 ~Ii~D~~~~~~~----~p~-------~-----~l--~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~  239 (251)
                      .|++|+|.....    .|.       .     .+  ...+.... +. .|+|||.++--+++   +. ++....+.+.+-
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~-a~-~l~~gG~lvYsTCS---l~-~~ENe~vV~~~L  242 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-AL-TFPSLQRLVYSTCS---LC-QEENEDVVRDAL  242 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHH-HT-TCTTCCEEEEEESC---CC-GGGTHHHHHHHH
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHH-hh-hcccccEEEEeecc---CC-hhHhHHHHHHHH
Confidence            999999843210    110       0     00  01233333 23 57999988766554   22 344455555555


Q ss_pred             hhCCc
Q 025534          240 QVFKC  244 (251)
Q Consensus       240 ~~F~~  244 (251)
                      +.+|.
T Consensus       243 ~~~~~  247 (293)
T d2b9ea1         243 QQNPG  247 (293)
T ss_dssp             TTSTT
T ss_pred             HhCCC
Confidence            55553

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.15  E-value=6.6e-07  Score=73.85  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      .++|||||||+|..+..+++..+..+++++|+-+ +++.++          ..+|++++.+|.++-+   + ..|++++-
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~----------~~~r~~~~~~d~~~~~---P-~ad~~~l~  146 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP----------SYPGVEHVGGDMFVSI---P-KADAVFMK  146 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC----------CCTTEEEEECCTTTCC---C-CCSCEECS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc----------cCCceEEecccccccC---C-CcceEEEE
Confidence            5789999999999999999876667999999954 433222          3479999999976532   2 34555443


Q ss_pred             C-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          183 L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       183 ~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      . ...+  ..   -.....++. +++.|+|||.+++.
T Consensus       147 ~vlh~~--~d---~~~~~iL~~-~~~al~pgg~~li~  177 (243)
T d1kyza2         147 WICHDW--SD---EHCLKFLKN-CYEALPDNGKVIVA  177 (243)
T ss_dssp             SSSTTS--CH---HHHHHHHHH-HHHHCCSSSCEEEE
T ss_pred             EEeecC--CH---HHHHHHHHH-HHHhcCCCceEEEE
Confidence            2 2222  11   123468888 69999999977765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=1.6e-05  Score=67.86  Aligned_cols=115  Identities=15%  Similarity=0.062  Sum_probs=80.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+|||+++|.|+=+..++.. .....++++|+++.-++..++++...+    ..++.++..|+..+ .....+||.|
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----~~~i~~~~~d~~~~-~~~~~~fD~I  189 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHI-GELNVEFDKI  189 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGG-GGGCCCEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----hhcccccccccccc-ccccccccEE
Confidence            34689999999999977776653 234689999999999999988776432    35788888998765 3346789999


Q ss_pred             EEcCCCCCC----CCccc-CCc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 025534          180 IGDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       180 i~D~~~~~~----~~p~~-~l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      ++|+|....    ..|.. ...           ..+.+.. +.+.|||||.++--+++
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHh-hhheeCCCcEEEEeecc
Confidence            999984322    11210 011           1355666 57899999998876654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.5e-06  Score=67.27  Aligned_cols=127  Identities=20%  Similarity=0.306  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-------cC
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-------SR  172 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-------~~  172 (251)
                      .+..+||||||+.|+.+..+.++ .+...|.++|+.+.           .    .-+++.++.+|..+.-.       ..
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~----~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D----PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C----CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c----ccCCceEeecccccchhhhhhhhhcc
Confidence            46689999999999999988874 44468999998762           1    23577888888743211       13


Q ss_pred             CCceeEEEEcCCCCCCCCcc-cCCcc----HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534          173 KESYDVIIGDLADPIEGGPC-YKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN  247 (251)
Q Consensus       173 ~~~fD~Ii~D~~~~~~~~p~-~~l~~----~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~  247 (251)
                      ..++|+|++|.......... .+..+    ..-+.- +.+.|++||.+++..     |. ......++..|+..|..|..
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~-a~~~Lk~gG~fV~K~-----F~-g~~~~~l~~~l~~~F~~V~~  158 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEM-CRDVLAPGGSFVVKV-----FQ-GEGFDEYLREIRSLFTKVKV  158 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE-----ES-STTHHHHHHHHHHHEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHh-hhhccCCCCcEEEEE-----ec-CccHHHHHHHHHhhcCEEEE
Confidence            46899999997532221110 00001    112222 358999999999876     32 22356788889999988765


Q ss_pred             ec
Q 025534          248 LT  249 (251)
Q Consensus       248 ~~  249 (251)
                      +.
T Consensus       159 ~K  160 (180)
T d1ej0a_         159 RK  160 (180)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.09  E-value=2.4e-06  Score=75.89  Aligned_cols=113  Identities=15%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC----C---------CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK----T---------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~----~---------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      ...+|+|..||+|++...+.++-    .         ...+.++|+++.+..+|+-++-+.+.  ..+..++..+|....
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~--~~~~~~i~~~d~l~~  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI--GTDRSPIVCEDSLEK  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC--CSSCCSEEECCTTTS
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC--ccccceeecCchhhh
Confidence            46899999999999988776531    0         12489999999999999988765432  334667888886542


Q ss_pred             HhcCCCceeEEEEcCCCCCCCCc-----------ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          169 LESRKESYDVIIGDLADPIEGGP-----------CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~~~~~~~p-----------~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                        ....+||+|+.+||.......           ...-....|++. +.+.|++||++++-.
T Consensus       240 --~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~iI~  298 (425)
T d2okca1         240 --EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVL  298 (425)
T ss_dssp             --CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             --hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHH-HHHhcCCCCeEEEEe
Confidence              234789999999984211000           001112458888 689999999877644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.9e-05  Score=62.13  Aligned_cols=108  Identities=28%  Similarity=0.247  Sum_probs=77.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh---cC-CCce
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SR-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~---~~-~~~f  176 (251)
                      .++..++|..+|.|+-+..+++..  .+|.++|.||++++.|++.        ..+++.++++...++-.   .. .+++
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~--------~~~~~~~~~~~f~~~~~~l~~~~~~~v   86 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGL--------HLPGLTVVQGNFRHLKRHLAALGVERV   86 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHT--------CCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhc--------cccceeEeehHHHHHHHHHHHcCCCcc
Confidence            456789999999999999999863  5999999999999999874        24689999887665432   22 3689


Q ss_pred             eEEEEcCCCCC--CCCcccCC-ccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPI--EGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~--~~~p~~~l-~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |.|+.|.--..  ...|...+ +....+.. ..+.|++||.+++..
T Consensus        87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~-~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          87 DGILADLGVSSFHLDDPSDELNALKEFLEQ-AAEVLAPGGRLVVIA  131 (182)
T ss_dssp             EEEEEECSCCHHHHHCGGTHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CEEEEEccCCHHHhhcchHHHHHHHHHHHH-HHhhhCCCCeEEEEe
Confidence            99999973100  00111111 12335666 578999999998765

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.00  E-value=7.2e-06  Score=67.36  Aligned_cols=132  Identities=12%  Similarity=0.044  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      .+..+|+|||||.|+.+..++....+..|.++++--..     ...+.....+..+-+++...+-..++  .+++.|+|+
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~-----~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vl  137 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG-----HEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLL  137 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEE
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc-----ccCCccccccccccccchhhhhHHhc--CCCcCCEEE
Confidence            44568999999999999999987666788888883211     00111111111122455544433332  457899999


Q ss_pred             EcCCCCCCCCc-ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534          181 GDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG  245 (251)
Q Consensus       181 ~D~~~~~~~~p-~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v  245 (251)
                      +|..... ..+ .++.-+.+.++. +.+.|+|||-|++..-.|  + .+ ...+.++.|+..|...
T Consensus       138 cDm~ess-~~~~vd~~Rtl~vLel-a~~wLk~gg~FvvKVl~p--y-~~-~v~e~le~lq~~fgg~  197 (257)
T d2p41a1         138 CDIGESS-PNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP--Y-MS-SVIEKMEALQRKHGGA  197 (257)
T ss_dssp             ECCCCCC-SSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC--C-SH-HHHHHHHHHHHHHCCE
T ss_pred             eeCCCCC-CCchhhhhhHHHHHHH-HHHHcccCCEEEEEECCC--C-Ch-HHHHHHHHHHHHhCCe
Confidence            9975321 122 112234456666 678999999999988666  2 33 3556777888877644

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=6.1e-05  Score=61.62  Aligned_cols=120  Identities=17%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      ...+++|||+|+|.=+.-++=..+..+++.||.+..=+...+.-....    .-.+++++++.+.++-..  ..++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----CCCCcEEEeehhhhccccccccccceEE
Confidence            467999999999964444433234579999999999888877654422    235899999999887543  24689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      ++=++.+.          ..+++. +...++++|.+++.-+..    ..+.+....+.+..
T Consensus       146 ~sRAva~l----------~~ll~~-~~~~l~~~g~~i~~KG~~----~~~El~~a~~~~~~  191 (239)
T d1xdza_         146 TARAVARL----------SVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITT  191 (239)
T ss_dssp             EEECCSCH----------HHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHH
T ss_pred             EEhhhhCH----------HHHHHH-HhhhcccCCEEEEECCCC----hHHHHHHHHHHHHH
Confidence            99876421          356676 689999999998877642    24445555555544

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=4.3e-05  Score=69.47  Aligned_cols=118  Identities=7%  Similarity=-0.048  Sum_probs=73.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc----CC--------------CcEEEEEECChHHHHHHHhchhcccCCC-CCCCeEEE
Q 025534          101 PNPKTIFIMGGGEGSTAREILRH----KT--------------VEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELV  161 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~~~l~~~----~~--------------~~~v~~VEid~~vi~~a~~~~~~~~~~~-~~~rv~~~  161 (251)
                      ....+|+|..||+|++...+.++    ..              ...+.++|+++.+.++|+-++-+.+... ....-.+.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~  242 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  242 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence            34578999999999998766553    10              1258999999999999998765443100 01122344


Q ss_pred             EcchHHHHhcCCCceeEEEEcCCCCCCC--------CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          162 INDARAELESRKESYDVIIGDLADPIEG--------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       162 ~~D~~~~l~~~~~~fD~Ii~D~~~~~~~--------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      .+|...--.....+||+|+.|||.....        .+...-...-|++. +.+.|+|||++++-.
T Consensus       243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVV  307 (524)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH-HHHhccccCcEEEEE
Confidence            5554332112346899999999842110        01011112358888 689999999877643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=3.3e-05  Score=65.98  Aligned_cols=60  Identities=8%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~  168 (251)
                      ....||+||.|.|.++..+++.....+|+++|+|+...+..++.+.       +.+++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-------CCCcEEEeCchhhc
Confidence            4567999999999999999986434699999999999999887653       46899999999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.54  E-value=0.00022  Score=54.89  Aligned_cols=98  Identities=23%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +|.+|++||+|.-+. +...++.-+ ++|++.|.+++.++..+..+..        +++....+-. .+.+.-...|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~--------~~~~~~~~~~-~l~~~~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS--------RVELLYSNSA-EIETAVAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG--------GSEEEECCHH-HHHHHHHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcc--------cceeehhhhh-hHHHhhccCcEEE
Confidence            589999999997664 444444444 6999999999999988876642        3555555533 2333235699999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      .-..-|.  .++..|.+++..     +.+|||.+++
T Consensus       101 ~aalipG--~~aP~lIt~~mv-----~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPG--RRAPILVPASLV-----EQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTT--SSCCCCBCHHHH-----TTSCTTCEEE
T ss_pred             EeeecCC--cccCeeecHHHH-----hhcCCCcEEE
Confidence            9887665  334578888753     4688998887

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.52  E-value=7.6e-05  Score=57.87  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD  177 (251)
                      .+..+||++|+|. |.++..+++..+..+|+++|.+++-.+.|++.=..       .-+.....|..+.+.+ + +..+|
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-------~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-------DILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-------EEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-------ccccccchhHHHHHHHHhhccCcc
Confidence            4568999999987 67788888877666899999999999999875210       0011111233343433 2 35699


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +||-....     +       +.+++ ..+.|+|+|.+++-.
T Consensus        99 ~vid~~g~-----~-------~~~~~-a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          99 RVIMAGGG-----S-------ETLSQ-AVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred             eEEEccCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence            98865432     1       23455 467899999998743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00014  Score=56.44  Aligned_cols=98  Identities=15%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---Hhc-C-CC
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-R-KE  174 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l~~-~-~~  174 (251)
                      .++.+||++|+|. |.++..++++.+..+|+++|.+++-.+.+++.-..       .-+.....|..+.   +.+ + +.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-------LTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce-------EEEeccccchHHHHHHHHHhhCCC
Confidence            3468999999874 55677788877766899999999999999885210       0011111233322   222 2 35


Q ss_pred             ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      .+|+|+-...     .+       ..++. ..+.|+++|++++-
T Consensus       100 g~Dvvid~vG-----~~-------~~~~~-a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         100 GADFILEATG-----DS-------RALLE-GSELLRRGGFYSVA  130 (182)
T ss_dssp             CEEEEEECSS-----CT-------THHHH-HHHHEEEEEEEEEC
T ss_pred             CceEEeecCC-----ch-------hHHHH-HHHHhcCCCEEEEE
Confidence            6999885532     11       23455 56789999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.00013  Score=56.01  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=62.3

Q ss_pred             CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+| .|.++..+++..+ .+|+++|.+++-++.+++.-.       +  ..+...+-.++.+...+.+|+|
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lGa-------~--~~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGA-------D--HYIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTC-------S--EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccCC-------c--EEeeccchHHHHHhhhcccceE
Confidence            457899999997 4456677777666 589999999999999988521       0  1111111123444456789998


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.......  ..   .     +.. ..+.|+|+|++++-.
T Consensus        96 i~~~~~~~--~~---~-----~~~-~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          96 VVCASSLT--DI---D-----FNI-MPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EECCSCST--TC---C-----TTT-GGGGEEEEEEEEECC
T ss_pred             EEEecCCc--cc---h-----HHH-HHHHhhccceEEEec
Confidence            86433221  10   0     123 467899999988643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.36  E-value=0.00028  Score=55.58  Aligned_cols=112  Identities=11%  Similarity=0.067  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025534          100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (251)
Q Consensus       100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~f  176 (251)
                      ..++.+||++|+|. |.++..+++..+..+|+++|.++.-++.|+++-...-       +.-...|..+.+.+  .+..+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~-------~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA-------DLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE-------ETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE-------EeCCCcCHHHHHHHHhCCCCc
Confidence            35678999999998 4466777776667799999999999999998722100       00012344444432  24579


Q ss_pred             eEEEEcCCCCCCCCc---ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p---~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++-..-.+....+   ....-+.+.++. ..+.++|+|.+++-.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~-~~~~~r~gG~v~~~G  140 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHH-HHHHHhcCCEEEEee
Confidence            998855432111011   111224578888 688999999998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.32  E-value=0.0016  Score=49.29  Aligned_cols=97  Identities=14%  Similarity=0.100  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-------cchHHHHhc-
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-------NDARAELES-  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-------~D~~~~l~~-  171 (251)
                      .++.+||++|+|. |.++..+++..+ .+|+++|.+++-++.|++....         ..+..       .+..+.+.. 
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~---------~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGAD---------VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS---------EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCc---------EEEeccccccccchhhhhhhcc
Confidence            4568999999874 445667777766 5899999999999999986321         11111       112222322 


Q ss_pred             CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .++.+|+|+-...     .       ...++. ..+.|+++|++++-..
T Consensus        95 ~g~g~D~vid~~g-----~-------~~~~~~-a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 IGDLPNVTIDCSG-----N-------EKCITI-GINITRTGGTLMLVGM  130 (170)
T ss_dssp             SSSCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECSC
T ss_pred             cccCCceeeecCC-----C-------hHHHHH-HHHHHhcCCceEEEec
Confidence            3567999886532     1       245666 5789999999987653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0014  Score=49.98  Aligned_cols=100  Identities=12%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH---HHh-cCCCc
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELE-SRKES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~---~l~-~~~~~  175 (251)
                      .+..+||++|+|+.++ +..+++..+..+|+++|.++.-++.|+++-...       -+..-..|..+   .+. ..+..
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~-------~~~~~~~~~~~~~~~~~~~~g~g   97 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL-------VLQISKESPQEIARKVEGQLGCK   97 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE-------EEECSSCCHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc-------cccccccccccccccccccCCCC
Confidence            3467999999987654 566677666668999999999999999862110       01111122222   221 13467


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +|+|+-...     .       ...++. ..+.++++|++++-..
T Consensus        98 ~Dvvid~~G-----~-------~~~~~~-a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          98 PEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECSC
T ss_pred             ceEEEeccC-----C-------chhHHH-HHHHhcCCCEEEEEec
Confidence            999886532     1       245666 5789999999987653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.08  E-value=0.0029  Score=47.81  Aligned_cols=117  Identities=16%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ++|++||+|.  +++++.+.+.....+|+++|.|++.++.+++.-.          +.....+...   ......|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----------~~~~~~~~~~---~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----------IDEGTTSIAK---VEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----------CSEEESCGGG---GGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----------chhhhhhhhh---hhccccccccc
Confidence            4799999985  3356666665434589999999999999987521          1111122111   11246899998


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL  248 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~  248 (251)
                      ..+..         ...+.+.. +...++++-+++ ..++.    .......+.+.+...|-..+|.
T Consensus        69 a~p~~---------~~~~vl~~-l~~~~~~~~ii~-d~~s~----k~~~~~~~~~~~~~~~i~~hPm  120 (171)
T d2g5ca2          69 SSPVR---------TFREIAKK-LSYILSEDATVT-DQGSV----KGKLVYDLENILGKRFVGGHPI  120 (171)
T ss_dssp             CSCHH---------HHHHHHHH-HHHHSCTTCEEE-ECCSC----CTHHHHHHHHHHGGGEECEEEE
T ss_pred             cCCch---------hhhhhhhh-hhcccccccccc-ccccc----cHHHHHHHHHhhcccccccccc
Confidence            86521         13467777 688898876665 44332    1334445555566656555654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.07  E-value=0.00071  Score=51.92  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      .+..+||++|+|.-+ ++..+++..+...|.++|.++.-++.++++-. .      .-+..-..|..+.+++ +++.+|+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-~------~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-T------HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-S------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-e------EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            456889999997654 35566665556789999999999999998521 0      0011112345555543 4568999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+-..-            ..+.++. ..+.++|+|++++-.
T Consensus       100 vid~~G------------~~~~~~~-~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         100 ALESTG------------SPEILKQ-GVDALGILGKIAVVG  127 (174)
T ss_dssp             EEECSC------------CHHHHHH-HHHTEEEEEEEEECC
T ss_pred             EEEcCC------------cHHHHHH-HHhcccCceEEEEEe
Confidence            986532            1245666 578999999998643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.88  E-value=0.0042  Score=47.60  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=65.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc--hHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D--~~~~l~~-~~~~f  176 (251)
                      .++.+||++|+|+ |.++..+++..+...|+++|.+++=.++|+++-...       -+.....|  ....... .+..+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD-------CLNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc-------ccCCccchhhhhhhHhhhhcCCC
Confidence            4568999999988 667788888777778999999999999999862110       00000111  1222211 35679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~  219 (251)
                      |+++-..-     .       .+.++. ..+.|+++ |.+++-.
T Consensus       100 d~vie~~G-----~-------~~~~~~-a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             cEEEEecc-----c-------chHHHH-HHHHhhcCCeEEEecC
Confidence            99986532     1       245666 57889996 9988654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0047  Score=46.69  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|+ |.++.++++..+ .++++++.+++-.+.+++.-.          -.++...-........+.+|++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGa----------d~~i~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGA----------DEVVNSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTC----------SEEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCC----------cEEEECchhhHHHHhcCCCcee
Confidence            4678999999865 345677777766 477789999998888887421          1122222122333334689999


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +-....+.            .+.. ..+.|+++|++++-.
T Consensus        98 id~~g~~~------------~~~~-~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          98 LNTVAAPH------------NLDD-FTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EECCSSCC------------CHHH-HHTTEEEEEEEEECC
T ss_pred             eeeeecch------------hHHH-HHHHHhcCCEEEEec
Confidence            87653211            1344 468999999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.69  E-value=0.0022  Score=48.79  Aligned_cols=96  Identities=16%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhcC-CCc
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESR-KES  175 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~~-~~~  175 (251)
                      .+..+||++|+|+.+. +..+++..+...|+++|.+++-.+.+++....          .++.   .+....++.+ .+.
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~----------~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD----------HVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS----------EEEETTSCHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc----------eeecCcccHHHHHHHhhCCCC
Confidence            4568899999977665 35666655567899999999999999986321          1111   2233333333 456


Q ss_pred             eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+|+-...     .       ...++. ..+.|+++|++++-.
T Consensus       101 ~d~vid~~g-----~-------~~~~~~-a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVG-----S-------QATVDY-TPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSC-----C-------HHHHHH-GGGGEEEEEEEEECC
T ss_pred             ceEEEEecC-----c-------chHHHH-HHHHHhCCCEEEEEe
Confidence            999886642     1       245677 688999999998654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.65  E-value=0.0013  Score=49.89  Aligned_cols=99  Identities=21%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             CCCCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCce
Q 025534          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~f  176 (251)
                      .++.+||++|++  .|.++..+++..+..+|+++|.+++-.+.++++-...       .+..-..|..+.+.+ + ++.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-------VINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-------eeccCCcCHHHHHHHHhhcccc
Confidence            456789999973  3344555666555579999999999999998752100       011011234444332 2 4679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-...     .       .+.++. ..+.|+|+|++++-.
T Consensus        99 d~vid~~g-----~-------~~~~~~-a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          99 DAVIDLNN-----S-------EKTLSV-YPKALAKQGKYVMVG  128 (170)
T ss_dssp             EEEEESCC-----C-------HHHHTT-GGGGEEEEEEEEECC
T ss_pred             hhhhcccc-----c-------chHHHh-hhhhcccCCEEEEec
Confidence            98886532     1       244555 578999999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.55  E-value=0.0021  Score=48.51  Aligned_cols=98  Identities=13%  Similarity=0.068  Sum_probs=61.7

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .++.+||++|+|.-+ ++..+++..+ .+|+++|.+++-++.+++.-..       .-+.....|..+.+......+|.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGAS-------LTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCcc-------ccccccchhHHHHHHHhhcCCccc
Confidence            456889999987544 4566677666 6999999999999999986211       011111234444443323345655


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.+..     .       .+.++. ..+.|+++|++++-.
T Consensus        98 i~~~~-----~-------~~~~~~-~~~~l~~~G~iv~~G  124 (166)
T d1llua2          98 LVTAV-----S-------NSAFGQ-AIGMARRGGTIALVG  124 (166)
T ss_dssp             EECCS-----C-------HHHHHH-HHTTEEEEEEEEECC
T ss_pred             ccccc-----c-------chHHHH-HHHHhcCCcEEEEEE
Confidence            55532     1       244566 578999999998643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.55  E-value=0.0043  Score=48.07  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-C-CCCCeE------------EEEcchH
Q 025534          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F-SDPRLE------------LVINDAR  166 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~-~~~rv~------------~~~~D~~  166 (251)
                      +|.+||+||+|.-++ +...+..-+ ++|++.|+++..++..++.++..-.. . .....+            +.... .
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG-A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~-~  105 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ-A  105 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH-H
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH-H
Confidence            578999999997765 444444444 69999999999999998865421000 0 000011            11111 1


Q ss_pred             HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      +.+.+.-...|+||.-..-|.  .++..|.+++.     -+.+|||.+++
T Consensus       106 ~~l~~~l~~aDlVI~talipG--~~aP~lit~~m-----v~~Mk~GSVIV  148 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPG--KPAPVLITEEM-----VTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTT--SCCCCCSCHHH-----HTTSCTTCEEE
T ss_pred             HHHHHHHHhhhhheeeeecCC--cccceeehHHH-----HHhcCCCcEEE
Confidence            122222246999999887665  33346888764     35689999887

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0024  Score=48.61  Aligned_cols=95  Identities=16%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             CCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      ++.+||+.|+  |.|..+..+++..+ .+|+++..+++-.+.++++-.       +.-+.....|..+.+..  .++.+|
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEeccccccccccccccccC-cccccccccccccccccccCc-------ccccccccccHHHHhhhhhccCCce
Confidence            5678999996  44556777888766 589988889988898887521       11111112345555432  346799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+...      +       .+.++. ..+.|+|+|+++.-
T Consensus       100 ~v~d~~------g-------~~~~~~-~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEML------A-------NVNLSK-DLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEESC------H-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             EEeecc------c-------HHHHHH-HHhccCCCCEEEEE
Confidence            988642      1       134666 56789999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.39  E-value=0.0056  Score=46.88  Aligned_cols=100  Identities=8%  Similarity=-0.041  Sum_probs=61.4

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc--hHHHHh-cCCCce
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELE-SRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D--~~~~l~-~~~~~f  176 (251)
                      .+...||++|+|+.++ +..+++..+..+|+++|.+++-+++|+++-...       -+.....|  .....+ ..+..+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-------~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE-------CISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE-------EECccccchHHHHHHHHhccccc
Confidence            4567899999987664 566677767689999999999999999973211       01101111  112222 135679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+++....     .+       ..++..+...++.+|++++-.
T Consensus       101 d~vi~~~g-----~~-------~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         101 GYTFEVIG-----HL-------ETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CEEEECSC-----CH-------HHHHHHHTTSCTTTCEEEECS
T ss_pred             eEEEEeCC-----ch-------HHHHHHHHHhhcCCeEEEEEE
Confidence            99887753     11       223331455556668887654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.34  E-value=0.0042  Score=47.51  Aligned_cols=100  Identities=9%  Similarity=-0.031  Sum_probs=60.5

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc--hHHHHh-cCCCce
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELE-SRKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D--~~~~l~-~~~~~f  176 (251)
                      .++.+||++|+|..++ +..+++..+..+|+++|.+++-++.|+++-...       -+.....|  ..+... ..+..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~-------~i~~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE-------CLNPKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE-------EEcCCCchhHHHHHHHHhcCCCC
Confidence            4568899999987664 455666556679999999999999999862210       11111122  122222 245679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+...-     .       .+.++..+...++++|++++-.
T Consensus        99 d~vid~~g-----~-------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          99 DYAVECAG-----R-------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SEEEECSC-----C-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEEcCC-----C-------chHHHHHHHHHHHhcCceEEEE
Confidence            99997642     1       1333442344445568887644

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.21  E-value=0.0097  Score=44.62  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             eEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ||.+||+|  ++.+++.+.+. + .+|+++|.+++.++.+++.-.          +.....+ .+.+    +..|+|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~-g-~~V~~~d~~~~~~~~a~~~~~----------~~~~~~~-~~~~----~~~DiIila   64 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR-G-HYLIGVSRQQSTCEKAVERQL----------VDEAGQD-LSLL----QTAKIIFLC   64 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHTTS----------CSEEESC-GGGG----TTCSEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCchHHHHHHHhhc----------cceeeee-cccc----ccccccccc
Confidence            78999998  55677777664 3 589999999999988876411          1111122 1222    578999987


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      .+.         -...+.+++ +...|+++-+++
T Consensus        65 vp~---------~~~~~vl~~-l~~~l~~~~iv~   88 (165)
T d2f1ka2          65 TPI---------QLILPTLEK-LIPHLSPTAIVT   88 (165)
T ss_dssp             SCH---------HHHHHHHHH-HGGGSCTTCEEE
T ss_pred             CcH---------hhhhhhhhh-hhhhccccccee
Confidence            542         124577888 788888877664

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.92  E-value=0.007  Score=48.22  Aligned_cols=60  Identities=12%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             EEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCC--------ccHHHHHHHHcccCCCCcEEEEec
Q 025534          159 ELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       159 ~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++++|.++.++.. +++.|+|+.|||...........        +..+++++ ++++|+|+|.+++..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e-~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHH-hhhccccCccccccc
Confidence            69999999999874 57899999999843210000011        12356777 689999999887654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.87  E-value=0.0047  Score=46.33  Aligned_cols=98  Identities=16%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+..+||+.|+|+-++ +..+++..+ .+|++++.+++-.+.++++-...       -+.....|..+-++.....+|.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~~-------~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADL-------VVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSE-------EECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCcce-------ecccccchhhhhcccccCCCceE
Confidence            4568999999877554 556666655 58999999999999998852110       00001124444444333445555


Q ss_pred             EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +.+..     .       .+.+.. ..+.|+|+|++++-.
T Consensus        98 v~~~~-----~-------~~~~~~-a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          98 VVTAV-----S-------KPAFQS-AYNSIRRGGACVLVG  124 (168)
T ss_dssp             EESSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EeecC-----C-------HHHHHH-HHHHhccCCceEecc
Confidence            56643     1       244566 578899999998754

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.71  E-value=0.042  Score=44.84  Aligned_cols=121  Identities=11%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025534          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL  183 (251)
Q Consensus       107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~D~  183 (251)
                      +-.=.|+-.++..+++.  ..+...+|+.|+-.+..+++|.      .+++++++..|+++.+..   +.++==+|++||
T Consensus        87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~------~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH------FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC------TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhc------cCCCceEEcCchHHHHHhhCCCCCCceEEEecC
Confidence            34667888899888874  3699999999999999998875      358999999999999864   245666999998


Q ss_pred             CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCc
Q 025534          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC  244 (251)
Q Consensus       184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~  244 (251)
                      +.-.   ..+...-.+.+.. +.++- |.|+++++.  |  ..+......+.+.|++.-+.
T Consensus       159 pYE~---k~ey~~v~~~l~~-a~kr~-~~g~~~iWY--P--i~~~~~~~~~~~~l~~~~~k  210 (271)
T d2oo3a1         159 SYER---KEEYKEIPYAIKN-AYSKF-STGLYCVWY--P--VVNKAWTEQFLRKMREISSK  210 (271)
T ss_dssp             CCCS---TTHHHHHHHHHHH-HHHHC-TTSEEEEEE--E--ESSHHHHHHHHHHHHHHCSS
T ss_pred             CcCC---HHHHHHHHHHHHH-HHHhC-CCceEEEEe--e--ccCcHHHHHHHHHHHhcCcc
Confidence            7422   1111111233333 22222 579998886  3  45667788888888876553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0086  Score=45.41  Aligned_cols=97  Identities=10%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             CCCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCce
Q 025534          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~f  176 (251)
                      .++.+||+.|+|+  |.++.++++..+ .+|++++.+++-.+.+++.-.       +.-+.....|..+.+++  .++.+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~lGa-------~~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGA-------WQVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhcCC-------eEEEECCCCCHHHHHHHHhCCCCe
Confidence            3467999997765  456778888755 689999999999999987521       11111122355555543  24679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-...     +        +.+.. ..+.|+++|.+++..
T Consensus        99 d~v~d~~g-----~--------~~~~~-~~~~l~~~G~~v~~g  127 (179)
T d1qora2          99 RVVYDSVG-----R--------DTWER-SLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEECSC-----G--------GGHHH-HHHTEEEEEEEEECC
T ss_pred             EEEEeCcc-----H--------HHHHH-HHHHHhcCCeeeecc
Confidence            98765431     1        22455 578899999887644

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.68  E-value=0.023  Score=46.97  Aligned_cols=125  Identities=11%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+-|||++-||.|++...+.+. +..-+.++|+|+.+++..+.+++..           .++|..+.-...-...|+|+.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhcceeeeeec
Confidence            4578999999999998887664 5566788999999999999987521           146766653333357999999


Q ss_pred             cCCCC-CC-C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          182 DLADP-IE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       182 D~~~~-~~-~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      -+|.. .+ .       ++...|+ .++++.  -+.++|.=.++=|+..-........+..+.+.|++.
T Consensus        78 gpPCq~fS~ag~~~g~~d~r~~l~-~~~~~~--i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~l  143 (327)
T d2c7pa1          78 GFPCQAFSISGKQKGFEDSRGTLF-FDIARI--VREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHH-HHHHHH--HHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhcCCcccchhHH-HHHHHH--HhccCCcEEecccchhhhhhccchhhHHhhhHHHhc
Confidence            88732 11 1       1111222 455554  467899766654552110012345677778888765

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.61  E-value=0.063  Score=43.78  Aligned_cols=123  Identities=11%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~  184 (251)
                      +||++-||.|++..-+.+. +...+.++|+|+...+..+.+++          -+++.+|..++-...-.+.|+++.-+|
T Consensus         2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCCHhHcccccEEeeccc
Confidence            7999999999988776654 45667799999999999888764          145678877653332357999999887


Q ss_pred             CC-CC-CCcccCCcc------HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534          185 DP-IE-GGPCYKLYT------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (251)
Q Consensus       185 ~~-~~-~~p~~~l~~------~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~  240 (251)
                      .. +. .+....+..      .++++-  -+.++|.-+++=|+...........+..+++.+.+
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~--i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~  132 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLFYEYIRI--LKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDN  132 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHHHHHHHH--HHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchHHHHHHH--HHhhCCceeeccccccccccccchhhHHHHhHHhh
Confidence            42 21 111111111      244443  36789987766565211001234566777777664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.57  E-value=0.011  Score=44.83  Aligned_cols=95  Identities=19%  Similarity=0.153  Sum_probs=60.9

Q ss_pred             CCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD  177 (251)
                      +..+||+.|+  |.|.++..++++.+ .++.++.-+++-.+.++++-..       .-+.....|..+.+.+  .++.+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga~-------~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVE-------YVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCS-------EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCCcccccchhhcccc-ccceeeeccccccccccccccc-------ccccCCccCHHHHHHHHhCCCCEE
Confidence            4578999884  44456777787765 5777777788888888875211       0011122345555543  246799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      +|+....     +        +.++. +.+.|+++|+++.-
T Consensus        97 ~v~d~~g-----~--------~~~~~-~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          97 VVLNSLA-----G--------EAIQR-GVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEECCC-----T--------HHHHH-HHHTEEEEEEEEEC
T ss_pred             EEEeccc-----c--------hHHHH-HHHHhcCCCEEEEE
Confidence            9996432     1        34566 57899999999864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.019  Score=44.02  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CeEEEEe--cCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534          104 KTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii  180 (251)
                      ..||+.|  +|.|..+.++++..+...|+++..+++-.....+.+..      +.-+..-..|..+.+++ .++.+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEeeccchhHHHHHHHHhccCceEEE
Confidence            6799988  56677899999977766777776665554443332221      11122223355555554 456799998


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      -..      +       .+.++. ..+.|+++|+++.-
T Consensus       106 D~v------G-------g~~~~~-~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         106 DNV------G-------GDISNT-VISQMNENSHIILC  129 (187)
T ss_dssp             ESS------C-------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             ecC------C-------chhHHH-HhhhccccccEEEe
Confidence            432      1       145666 57899999999863

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.53  E-value=0.042  Score=41.14  Aligned_cols=100  Identities=16%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             CeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHHHHhchhc--cc-CCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          104 KTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVV--NK-EAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--~~-~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      +++-+||+|..+.+  ..|.+. + .+|+++|.+++-++..++.-..  .. ......+...+..|..+.+    +..|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCE
Confidence            68999999987754  444554 4 5899999999998887764211  11 0001112233456666655    46899


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |++-.+.         ....+.+++ ++.+|+++-++++..
T Consensus        76 iii~v~~---------~~~~~~~~~-i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          76 ILIVVPA---------IHHASIAAN-IASYISEGQLIILNP  106 (184)
T ss_dssp             EEECSCG---------GGHHHHHHH-HGGGCCTTCEEEESS
T ss_pred             EEEEEch---------hHHHHHHHH-hhhccCCCCEEEEeC
Confidence            9987542         124678888 799999988776543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.44  E-value=0.058  Score=40.28  Aligned_cols=99  Identities=7%  Similarity=-0.021  Sum_probs=62.1

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE--EEcchHHHHhc-CCCce
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~--~~~D~~~~l~~-~~~~f  176 (251)
                      .++.+||+.|+|+.+ ++..+++..+...|++++.+++-.++++++=..       .-+..  ...+..+.++. .+..+
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCCC
Confidence            456889999987443 456667765667999999999999999985210       00000  01233344433 35679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      |+|+-..-     .       ...++. ....+++||.+++..
T Consensus       100 D~vid~~G-----~-------~~~~~~-~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         100 DYSFECIG-----N-------VKVMRA-ALEACHKGWGVSVVV  129 (176)
T ss_dssp             SEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred             cEeeecCC-----C-------HHHHHH-HHHhhcCCceeEEEE
Confidence            99996532     1       245566 577888887665443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.38  E-value=0.035  Score=41.79  Aligned_cols=46  Identities=13%  Similarity=0.101  Sum_probs=36.2

Q ss_pred             CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      .++..||++|+|+++ .+..+++..+..+|.++|.+++-.+++++.-
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            456789999997665 4455566566689999999999999999863

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.27  E-value=0.067  Score=38.10  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH--HHHhcC-CCceeEEE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~--~~l~~~-~~~fD~Ii  180 (251)
                      ++|+++|+  |..+.++++.-....|.+||.|++.++..++           ..+.++.+|+.  +.+++. -++.+.++
T Consensus         1 kHivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEE
Confidence            46888876  5566666664334578999999999887654           25788889984  344443 36789999


Q ss_pred             EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +...+..         ..-+... ..+.+.|...+++....
T Consensus        68 ~~~~~d~---------~n~~~~~-~~r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          68 VNLESDS---------ETIHCIL-GIRKIDESVRIIAEAER   98 (129)
T ss_dssp             ECCSSHH---------HHHHHHH-HHHHHCSSSCEEEECSS
T ss_pred             Eeccchh---------hhHHHHH-HHHHHCCCceEEEEEcC
Confidence            8764321         1112223 34678999888877643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.22  E-value=0.017  Score=44.17  Aligned_cols=96  Identities=14%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             CCCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534          101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD  177 (251)
                      +++.+||+-|+++|  ..+.++++..+ .+|+++--+++-.+.+++.-...       -+. +..+..+.++. .++.||
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~lGa~~-------vi~-~~~~~~~~~~~~~~~gvD  100 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVLGAKE-------VLA-REDVMAERIRPLDKQRWA  100 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHTTCSE-------EEE-CC---------CCSCCEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHhcccce-------eee-cchhHHHHHHHhhccCcC
Confidence            34678999986544  46788888765 68999999998899998752211       010 01111112222 357899


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-...     +        +.+.. ..+.|+|+|+++.-.
T Consensus       101 ~vid~vg-----g--------~~~~~-~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         101 AAVDPVG-----G--------RTLAT-VLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEECST-----T--------TTHHH-HHHTEEEEEEEEECS
T ss_pred             EEEEcCC-----c--------hhHHH-HHHHhCCCceEEEee
Confidence            8775532     1        12445 468999999998644

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.09  E-value=0.047  Score=41.33  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CCCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hc-CCCce
Q 025534          101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ES-RKESY  176 (251)
Q Consensus       101 ~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~-~~~~f  176 (251)
                      .++.+||+.|+++|  ..+.++++..+ .+|+++.-+++-.+.+++.-..       .-+.....|..+.+ +. ..+.+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~-------~vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFD-------AAFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCS-------EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhhh-------hhcccccccHHHHHHHHhhcCCC
Confidence            35688999888654  46778888766 6999999999988888876211       00111112222322 22 35679


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+|+-..      +       .+.++. ..+.|+++|.++.-
T Consensus       100 d~v~D~v------G-------~~~~~~-~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYFDNV------G-------GEFLNT-VLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEESS------C-------HHHHHH-HGGGEEEEEEEEEC
T ss_pred             ceeEEec------C-------chhhhh-hhhhccCCCeEEee
Confidence            9988542      1       256777 68999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.09  E-value=0.049  Score=40.96  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             CCCCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      .+..+||+.|++  .|..+..+++..+ .+|++++.+++-.+.+++.-.         ..-+-..|..+.+. ..+.+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lGa---------~~~i~~~~~~~~~~-~~~g~D~   94 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALGA---------EEAATYAEVPERAK-AWGGLDL   94 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTTC---------SEEEEGGGHHHHHH-HTTSEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccccccccccc---------ceeeehhhhhhhhh-ccccccc
Confidence            456889998853  3456777888766 589999999988888887411         11122334333332 3467999


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+ |..     ++        .+.. ..+.|+|+|+++.-
T Consensus        95 v~-d~~-----G~--------~~~~-~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          95 VL-EVR-----GK--------EVEE-SLGLLAHGGRLVYI  119 (171)
T ss_dssp             EE-ECS-----CT--------THHH-HHTTEEEEEEEEEC
T ss_pred             cc-ccc-----ch--------hHHH-HHHHHhcCCcEEEE
Confidence            87 432     21        1344 46799999999864

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.01  E-value=0.013  Score=47.23  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             CeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCC----Cccc-CCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          157 RLELVINDARAELESR-KESYDVIIGDLADPIEG----GPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       157 rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~----~p~~-~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      +-.++.+|.++.+++. +++.|+|+.|||.....    .... .-+..+.+.+ +.++|+|+|.++++...
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e-~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEECS
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHH-HHHHhCCCccEEEecCc
Confidence            3467889999999874 58899999999843210    0000 0113566777 68999999999988754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.87  E-value=0.027  Score=45.96  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=40.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      ..++.-|||.-+|+|+++..+.+..  .+.+++|+|++.++.|++++.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGS
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHH
Confidence            4567899999999999999988863  699999999999999998875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.84  E-value=0.021  Score=46.62  Aligned_cols=64  Identities=27%  Similarity=0.317  Sum_probs=45.2

Q ss_pred             CeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCc-ccCCc-------cHHHHHHHHcccCCCCcEEEEecCC
Q 025534          157 RLELVINDARAELESR-KESYDVIIGDLADPIEGGP-CYKLY-------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       157 rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p-~~~l~-------~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      .=+++++|.++.++.. +++.|+|+.|||......- .....       -.+.+.+ +++.|+|+|.++++...
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~-~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhCcccCcccccccc
Confidence            4599999999999874 5789999999984321000 00111       1356777 68999999999988754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.65  E-value=0.034  Score=43.94  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      ..++.-|||.-+|+|+++..+.+..  .+.+++|+|++.++.|++.+
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence            3566789999999999999988863  69999999999999999875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.072  Score=43.82  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             CCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534          103 PKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I  179 (251)
                      |-+|+++.||.|++...+.+.. ...-+.++|+|+.+++..+.+++         ...++.+|..+....  .....|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCccEE
Confidence            5689999999999877665431 12346799999999999888754         345666776543211  11368999


Q ss_pred             EEcCCCCC-C-CC-------cccCCccHHHHHHHHcccC--CCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          180 IGDLADPI-E-GG-------PCYKLYTKSFYEFVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       180 i~D~~~~~-~-~~-------p~~~l~~~ef~~~~~~~~L--~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      +..+|... + .+       +...|+ .++++. ++ .+  +|.-+++=|+  |. +.....+..+++.|++.
T Consensus        73 ~ggpPCq~fS~ag~~~~~~d~r~~l~-~~~~~~-i~-~~~~kPk~~i~ENV--~~-l~~~~~~~~i~~~l~~~  139 (343)
T d1g55a_          73 LMSPPCQPFTRIGRQGDMTDSRTNSF-LHILDI-LP-RLQKLPKYILLENV--KG-FEVSSTRDLLIQTIENC  139 (343)
T ss_dssp             EECCC------------------CHH-HHHHHH-GG-GCSSCCSEEEEEEE--TT-GGGSHHHHHHHHHHHHT
T ss_pred             Eeeccccccccccccccccccccccc-chhhhh-Hh-hhcCCCceeeeecc--CC-cccchhhHHHHhhhhcc
Confidence            99887421 1 11       111221 455554 33 34  6875554444  32 23344566777777765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.22  E-value=0.12  Score=36.77  Aligned_cols=68  Identities=22%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCC-CceeEE
Q 025534          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDVI  179 (251)
Q Consensus       105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~-~~fD~I  179 (251)
                      +|+++|+|.=+  +++.|.+. + .+|++||.||+.++.+++.+          .+.++.+|+.+  .+...+ ++.|.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g-~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-G-HDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC-C-CCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhhhhh
Confidence            78999985432  23343333 3 58999999999988776532          35788888764  454433 679988


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      +.-..
T Consensus        70 v~~t~   74 (132)
T d1lssa_          70 IAVTG   74 (132)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            87543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.19  E-value=0.038  Score=44.28  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=41.1

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (251)
Q Consensus        99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~  147 (251)
                      ...++.-|||.-+|+|+++..+.+..  .+.+++|+|++.++.|++++.
T Consensus       204 ~s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         204 LSHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             HSCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHH
T ss_pred             hcCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHH
Confidence            34567789999999999999888873  699999999999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.014  Score=43.10  Aligned_cols=51  Identities=20%  Similarity=0.423  Sum_probs=37.1

Q ss_pred             HhHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhch
Q 025534           94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYL  146 (251)
Q Consensus        94 ~~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~~  146 (251)
                      .+|+....++++||++|+|.-+..  +.+++. + ++|+.|  |+++++..++.+..
T Consensus         4 ~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~-G-A~VtVvap~~~~~l~~~~~~~~   58 (150)
T d1kyqa1           4 SLQLAHQLKDKRILLIGGGEVGLTRLYKLMPT-G-CKLTLVSPDLHKSIIPKFGKFI   58 (150)
T ss_dssp             CEEEEECCTTCEEEEEEESHHHHHHHHHHGGG-T-CEEEEEEEEECTTHHHHHCGGG
T ss_pred             cchhheeeCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEeCCCCHHHHHHHHhcc
Confidence            456666778999999999876653  334443 3 688888  78899988887653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.33  E-value=0.018  Score=46.62  Aligned_cols=112  Identities=11%  Similarity=-0.003  Sum_probs=71.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhcC----------------------------------------CCcEEEEEECChHHHHH
Q 025534          102 NPKTIFIMGGGEGSTAREILRHK----------------------------------------TVEKVVMCDIDEEVVEF  141 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~~~~l~~~~----------------------------------------~~~~v~~VEid~~vi~~  141 (251)
                      .+..++|--||+|+++.+++-..                                        ....+.+.|+|+.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45679999999999987765410                                        00245688889999988


Q ss_pred             HHh---chhcccCCCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCCCCCCC----cccCCccHHHHHHHHcccCC
Q 025534          142 CKS---YLVVNKEAFSDPRLELVINDARAELE----SRKESYDVIIGDLADPIEGG----PCYKLYTKSFYEFVVKPRLN  210 (251)
Q Consensus       142 a~~---~~~~~~~~~~~~rv~~~~~D~~~~l~----~~~~~fD~Ii~D~~~~~~~~----p~~~l~~~ef~~~~~~~~L~  210 (251)
                      |++   +....+   ....+++...|+++.-.    ..+..+++||+|||.....+    ....++ .+|+.. +++.|.
T Consensus       130 A~~~r~n~~~Ag---l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~-~~~~~~-l~~~~p  204 (249)
T d1o9ga_         130 ARRLRERLTAEG---GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV-AGLLRS-LASALP  204 (249)
T ss_dssp             HHHHHHHHHHTT---SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH-HHHHHH-HHHHSC
T ss_pred             HHHHHHHHHHcC---CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH-HHHHHH-HHccCC
Confidence            853   443222   24678999999764321    13467899999998432211    001122 467777 688887


Q ss_pred             CCcEEEEe
Q 025534          211 PEGIFVTQ  218 (251)
Q Consensus       211 pgG~l~~~  218 (251)
                      ...++++-
T Consensus       205 ~~s~~~it  212 (249)
T d1o9ga_         205 AHAVIAVT  212 (249)
T ss_dssp             TTCEEEEE
T ss_pred             CCcEEEEe
Confidence            66666653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.24  E-value=0.91  Score=32.90  Aligned_cols=112  Identities=14%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             CCCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..++||-+||+|. |. ++..++...-..++..+|++++..+--..-+.. ...+....+++..+|..+ +    ..-|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~-~~~~~~~~~~~~~~d~~~-l----~daDv   77 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH-GKVFAPKPVDIWHGDYDD-C----RDADL   77 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH-HTTSSSSCCEEEECCGGG-T----TTCSE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhh-CccccCCCeEEEECCHHH-h----cccee
Confidence            3567999999864 33 444554444456899999999875532211211 111223456676777432 2    34799


Q ss_pred             EEEcCCCCCCCCcc-cCCcc------HHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l~~------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++-.-.+...+.. ..+..      +++.+. ++ .-.|++++++-++
T Consensus        78 vvitag~~~~~~~~R~dl~~~N~~i~~~i~~~-i~-~~~p~a~~ivvtN  124 (148)
T d1ldna1          78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VM-ASGFQGLFLVATN  124 (148)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HH-HHTCCSEEEECSS
T ss_pred             EEEecccccccCcchhHHHHHHHHHHHHHHHH-HH-hhCCCceEEEecC
Confidence            99876543311110 11221      234444 33 3468998876443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.89  E-value=0.1  Score=37.08  Aligned_cols=93  Identities=25%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCceeE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV  178 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~fD~  178 (251)
                      |+++++|+|.=+  ++..|.+. + ..|+++|.|++.++.+++.           ...++.+|+.+  .+... -++.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~-g-~~vvvid~d~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~a~i~~a~~   67 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM-G-HEVLAVDINEEKVNAYASY-----------ATHAVIANATEENELLSLGIRNFEY   67 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-T-CCCEEEESCHHHHHHTTTT-----------CSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-CeEEEecCcHHHHHHHHHh-----------CCcceeeecccchhhhccCCccccE
Confidence            578999887543  34444444 3 5899999999999887643           23566677643  23222 257898


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +++..++..         .....-. ..+.+.+...+++..
T Consensus        68 vi~~~~~~~---------~~~~~~~-~~~~~~~~~~iiar~   98 (134)
T d2hmva1          68 VIVAIGANI---------QASTLTT-LLLKELDIPNIWVKA   98 (134)
T ss_dssp             EEECCCSCH---------HHHHHHH-HHHHHTTCSEEEEEC
T ss_pred             EEEEcCchH---------HhHHHHH-HHHHHcCCCcEEeec
Confidence            888765422         1112222 234455666776654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.84  E-value=0.67  Score=34.11  Aligned_cols=102  Identities=17%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh-HHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE-EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~-~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f  176 (251)
                      ..+.++||+||.|.=+  ++..|..+ +..+++.+--+. ...++++++ +..         -.-..+..+.+    ..|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~-~~~---------~~~~~~~~~~l----~~~   85 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL-GGE---------AVRFDELVDHL----ARS   85 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH-TCE---------ECCGGGHHHHH----HTC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhh-hcc---------cccchhHHHHh----ccC
Confidence            3567899999986433  23444554 456899998885 444455543 211         11123444444    369


Q ss_pred             eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (251)
Q Consensus       177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p  222 (251)
                      |+||.....+      ..+.+.+.++..++.+-.....+++-.+-|
T Consensus        86 Divi~atss~------~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          86 DVVVSATAAP------HPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             SEEEECCSSS------SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             CEEEEecCCC------CccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            9999876532      346778888763333333345677776544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.57  Score=34.96  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             CCeEEEEecCchHHH---HHHHh-cC--CCcEEEEEECChHHHHHHHhc----hhcccCCCCCCCeEEEEcchHHHHhcC
Q 025534          103 PKTIFIMGGGEGSTA---REILR-HK--TVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELESR  172 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~---~~l~~-~~--~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~~~~~D~~~~l~~~  172 (251)
                      ..+|-+||+|+-+.+   ..++. ..  ...++..+|+|++-++...+.    .....    .+.--....|-.+-+   
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~eal---   75 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA----PDIEFAATTDPEEAF---   75 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC----TTSEEEEESCHHHHH---
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhC----CCcceEecCChhhcc---
Confidence            457999999875432   22333 22  235899999999887643332    22221    122233455766655   


Q ss_pred             CCceeEEEEcCC
Q 025534          173 KESYDVIIGDLA  184 (251)
Q Consensus       173 ~~~fD~Ii~D~~  184 (251)
                       +..|+|++-.-
T Consensus        76 -~~AD~Vvitag   86 (167)
T d1u8xx1          76 -TDVDFVMAHIR   86 (167)
T ss_dssp             -SSCSEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             35899998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.29  E-value=0.1  Score=38.92  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=35.3

Q ss_pred             CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~  145 (251)
                      .+..+||++|+|+++. +..+++......|+++|.+++-++.++++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            4557899999988654 44455555667999999999999999986

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.15  E-value=0.54  Score=37.64  Aligned_cols=79  Identities=15%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ++|.+|+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...+  ....++..+..|..+.      +.. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKE-G-AQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            56889999988774   55666664 4 689999999988887766554321  1235788888875432      221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence              2257899999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.041  Score=40.56  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=52.6

Q ss_pred             eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ||++||+|. |. ++..|++. + .+|+.++.+++..+..+    ..... .......+..+..+.+    +.+|+|++-
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~----~~~D~iii~   70 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-G-HEVQGWLRVPQPYCSVN----LVETD-GSIFNESLTANDPDFL----ATSDLLLVT   70 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSCCSEEEEE----EECTT-SCEEEEEEEESCHHHH----HTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-C-CceEEEEcCHHHhhhhc----cccCC-ccccccccccchhhhh----cccceEEEe
Confidence            799999987 33 45555554 3 48999999875322111    11100 0111222333333333    469999997


Q ss_pred             CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (251)
Q Consensus       183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~  217 (251)
                      ...         ..+.+.++. ++.+++++..++.
T Consensus        71 vka---------~~~~~~~~~-l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          71 LKA---------WQVSDAVKS-LASTLPVTTPILL   95 (167)
T ss_dssp             SCG---------GGHHHHHHH-HHTTSCTTSCEEE
T ss_pred             ecc---------cchHHHHHh-hccccCcccEEee
Confidence            542         224677787 6888888876554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.88  Score=35.96  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~--  170 (251)
                      +.+.||+.|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...+   ...++..+..|..+      ++.  
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~-G-~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQ-G-LKVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHHH
Confidence            56789999998775   45666664 4 589999999988777665544221   12467777777643      222  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|++|.++.
T Consensus        84 ~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          84 RSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHCCCSEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             12367999998875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.80  E-value=0.088  Score=36.65  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             HhHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEEC--ChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534           94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (251)
Q Consensus        94 ~~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEi--d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l  169 (251)
                      +.|+....++++||++|+|.=+..  +.+++. + ++|+.++.  +++...+++           ..+++++..+...  
T Consensus         3 ~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~-g-a~v~v~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~--   67 (113)
T d1pjqa1           3 HLPIFCQLRDRDCLIVGGGDVAERKARLLLEA-G-ARLTVNALTFIPQFTVWAN-----------EGMLTLVEGPFDE--   67 (113)
T ss_dssp             CEEEEECCBTCEEEEECCSHHHHHHHHHHHHT-T-BEEEEEESSCCHHHHHHHT-----------TTSCEEEESSCCG--
T ss_pred             ccceEEEeCCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEeccCChHHHHHHh-----------cCCceeeccCCCH--
Confidence            356666678899999999876653  344443 3 57887754  444444333           2456666554322  


Q ss_pred             hcCCCceeEEEEcCCC
Q 025534          170 ESRKESYDVIIGDLAD  185 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~~  185 (251)
                       ..-..+|+|+....+
T Consensus        68 -~dl~~~~lv~~at~d   82 (113)
T d1pjqa1          68 -TLLDSCWLAIAATDD   82 (113)
T ss_dssp             -GGGTTCSEEEECCSC
T ss_pred             -HHhCCCcEEeecCCC
Confidence             111568898887543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.76  E-value=1.1  Score=35.44  Aligned_cols=75  Identities=23%  Similarity=0.388  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +.|.||+.|+++|.   +++.+++. + .+|..++.+++-++.+.+.+..      ..++.++..|..+.      +.  
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRY-G-AKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHH
Confidence            57889999988775   45555554 4 6899999999988876665432      24677777776432      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++-
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence             12257999998874

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.73  E-value=0.082  Score=39.75  Aligned_cols=94  Identities=14%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-Hh-cCCCcee
Q 025534          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYD  177 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~-~~~~~fD  177 (251)
                      +..+||+-|+++  |..+.++++..+ ++|+++--+++-.+.+++.-.        . .-+...|.... +. ..++.+|
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~lGa--------d-~vi~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQLGA--------S-EVISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHHTC--------S-EEEEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhhcc--------c-ceEeccchhchhhhcccCCCce
Confidence            456799988644  456788888766 689999998888888877521        1 11111111111 11 1246799


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~  219 (251)
                      +|+-..-     +        +.+.. ..+.|+|+|++++..
T Consensus        93 ~vid~vg-----g--------~~~~~-~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          93 GAVDPVG-----G--------KQLAS-LLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EEEESCC-----T--------HHHHH-HHTTEEEEEEEEECC
T ss_pred             EEEecCc-----H--------HHHHH-HHHHhccCceEEEee
Confidence            9875532     1        34566 578999999998643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.69  E-value=0.37  Score=36.40  Aligned_cols=78  Identities=10%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      -+.++||+.|+++|.   +++.++++ + .+|+.++.+++-.+...+.+....   ...-...-..|..+ +++.-+..|
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~~iD   94 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGE-G-AEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDAS-RAEAVKGAH   94 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHH-HHHHTTTCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhh-c-cchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHH-HHHHhcCcC
Confidence            467999999987664   45566665 4 589999999988887776655321   11112333334322 333336789


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      ++|.+..
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            9998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.55  E-value=0.9  Score=35.93  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +++.+|+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+      .+.. 
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEE-G-TAIALLDMNREALEKAEASVREK-----GVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56889999988774   55666664 4 68999999999888777665432     2467888887643      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence              2267999998864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.11  E-value=1.9  Score=33.86  Aligned_cols=76  Identities=14%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      ++|.||+.|+..|.   ++..+++. + .+|..++.+++-++.+.+.+...     ..++.++..|..+.      +.  
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-G-~~V~i~~r~~~~l~~~~~~~~~~-----~~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGL-G-ARVYTCSRNEKELDECLEIWREK-----GLNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeecCCHHHHHHHHHHH
Confidence            67899999998663   45566664 4 58999999998877766655432     24567777776421      11  


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        ..+...|+++.++.
T Consensus        78 ~~~~~g~idilinnag   93 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHTTSCCCEEEECCC
T ss_pred             HHHhCCCcEEEecccc
Confidence              22357888888765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.93  E-value=1.5  Score=34.31  Aligned_cols=77  Identities=10%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh-
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~-  170 (251)
                      .+.|-+|+.|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+      +++ 
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~-G-a~V~~~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvt~~~~v~~~~~~   80 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKS-V-SHVICISRTQKSCDSVVDEIKSF-----GYESSGYAGDVSKKEEISEVINK   80 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTT-S-SEEEEEESSHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHH
Confidence            356778888887663   34444443 3 68999999999888776655432     2467888887753      222 


Q ss_pred             --cCCCceeEEEEcCC
Q 025534          171 --SRKESYDVIIGDLA  184 (251)
Q Consensus       171 --~~~~~fD~Ii~D~~  184 (251)
                        +.-++.|+++.++.
T Consensus        81 ~~~~~g~iDilvnnag   96 (251)
T d2c07a1          81 ILTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHHCSCCCEEEECCC
T ss_pred             HHHhcCCceeeeeccc
Confidence              22368999998875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=90.59  E-value=1.8  Score=31.18  Aligned_cols=111  Identities=20%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             CCCCeEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ++.+||-+||+|. |.. +..++...-..++..+|++++..+--..-+... .. ......+..+|-.+    . ..-|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a-~~-~~~~~~~~~~d~~~----~-~~adi   75 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA-QA-FTAPKKIYSGEYSD----C-KDADL   75 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG-GG-GSCCCEEEECCGGG----G-TTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc-cc-ccCCceEeeccHHH----h-ccccE
Confidence            4567999999865 433 344444443468999999997654211111100 00 12345666777432    1 45799


Q ss_pred             EEEcCCCCCCCCcc-cCCcc------HHHHHHHHcccCCCCcEEEEecC
Q 025534          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       179 Ii~D~~~~~~~~p~-~~l~~------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      |++-...+...+.. ..+..      ++.... +. .-.|++++++-++
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~-i~-~~~p~aivivvtN  122 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKP-VV-DSGFDGIFLVAAN  122 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHH-HH-HTTCCSEEEECSS
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHH-Hh-hcCCCcEEEEeCC
Confidence            99876433311111 11221      234444 33 4678998887554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=90.59  E-value=0.82  Score=33.42  Aligned_cols=80  Identities=18%  Similarity=0.131  Sum_probs=42.3

Q ss_pred             CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  179 (251)
                      .+.+||-+||+|. |....+++...+..++..+|+++..++-...-+.................|-.+-+    ..-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCCCeE
Confidence            4568999999875 33333333333456899999998766543322211000001122233334433333    357888


Q ss_pred             EEcCC
Q 025534          180 IGDLA  184 (251)
Q Consensus       180 i~D~~  184 (251)
                      ++..-
T Consensus        81 vitag   85 (154)
T d1pzga1          81 IVTAG   85 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            88764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.26  E-value=0.72  Score=34.58  Aligned_cols=92  Identities=20%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             CCCeEEEEecCc---hHHHHHHHhcCCCcEEEEE-EC---ChHHHHHHHhchhcccCCCCCCCeEEEEcc----------
Q 025534          102 NPKTIFIMGGGE---GSTAREILRHKTVEKVVMC-DI---DEEVVEFCKSYLVVNKEAFSDPRLELVIND----------  164 (251)
Q Consensus       102 ~~~~VL~iG~G~---G~~~~~l~~~~~~~~v~~V-Ei---d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D----------  164 (251)
                      ++.+||++.+|+   |..+..+++..+. +|+++ .-   .++..+.+++. +.         -.++..|          
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~l-Ga---------d~vi~~~~~~~~~~~~~   96 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKEL-GA---------TQVITEDQNNSREFGPT   96 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHH-TC---------SEEEEHHHHHCGGGHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhc-cc---------cEEEeccccchhHHHHH
Confidence            346899984433   4466777887664 55554 32   23344444442 10         1122211          


Q ss_pred             hHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       165 ~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      ..+.....+..+|+|+ |..     +       .+.+.. ..+.|+|+|+++..
T Consensus        97 v~~~~~~~g~~vdvv~-D~v-----g-------~~~~~~-~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          97 IKEWIKQSGGEAKLAL-NCV-----G-------GKSSTG-IARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHTCCEEEEE-ESS-----C-------HHHHHH-HHHTSCTTCEEEEC
T ss_pred             HHHHHhhccCCceEEE-ECC-----C-------cchhhh-hhhhhcCCcEEEEE
Confidence            1122222356799988 422     1       133455 56889999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.29  Score=37.38  Aligned_cols=103  Identities=17%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             CeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCCC-C------------CCeEEEEc
Q 025534          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFS-D------------PRLELVIN  163 (251)
Q Consensus       104 ~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~-~------------~rv~~~~~  163 (251)
                      ++|-+||+|.=+.  +..+++. + .+|+.+|.|++.++.+++.....     ...+. .            .+++.. .
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~-G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~   81 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT-G-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T   81 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred             EEEEEECcCHHHHHHHHHHHhC-C-CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence            6899999987553  3444443 4 58999999999999887764311     00000 0            122222 2


Q ss_pred             chHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       164 D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      |..+.+    ...|+|+-..++..       -.-.+.|++ +.+.++++-+++.|+.+
T Consensus        82 d~~~a~----~~ad~ViEav~E~l-------~~K~~v~~~-l~~~~~~~~ilasnTS~  127 (192)
T d1f0ya2          82 DAASVV----HSTDLVVEAIVENL-------KVKNELFKR-LDKFAAEHTIFASNTSS  127 (192)
T ss_dssp             CHHHHT----TSCSEEEECCCSCH-------HHHHHHHHH-HTTTSCTTCEEEECCSS
T ss_pred             hhHhhh----cccceehhhcccch-------hHHHHHHHH-HhhhcccCceeeccCcc
Confidence            322222    45789988766421       123578898 79999999999988743

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.91  E-value=0.85  Score=35.96  Aligned_cols=74  Identities=19%  Similarity=0.312  Sum_probs=49.5

Q ss_pred             CeE-EEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh---
Q 025534          104 KTI-FIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE---  170 (251)
Q Consensus       104 ~~V-L~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~---  170 (251)
                      ||| |+-|++.|.   +++.+++. + .+|..++.+++-++...+.+...     ..++..+..|..+      ++.   
T Consensus         1 KKValITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~i~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKD-G-FAVAIADYNDATAKAVASEINQA-----GGHAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            455 777877664   44555554 4 58999999999888776655432     2467888888653      222   


Q ss_pred             cCCCceeEEEEcCC
Q 025534          171 SRKESYDVIIGDLA  184 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~  184 (251)
                      +.-++.|++|.++-
T Consensus        74 ~~~g~iDilVnnAG   87 (255)
T d1gega_          74 KTLGGFDVIVNNAG   87 (255)
T ss_dssp             HHTTCCCEEEECCC
T ss_pred             HHhCCccEEEeccc
Confidence            22368999998874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=2  Score=33.55  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      .++.||+-|+++|.   ++.++++. + .+|..++.+++-++...+.+...     .+++..+..|..+.      ++  
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~-G-~~V~l~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL-K-SKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            46778888887774   55666664 4 68999999999887766655432     35788888886543      11  


Q ss_pred             -cCCCceeEEEEcCCC
Q 025534          171 -SRKESYDVIIGDLAD  185 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~~  185 (251)
                       ..-+..|+++.++..
T Consensus        79 ~~~~g~idilinnag~   94 (244)
T d1yb1a_          79 KAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             HHHcCCCceeEeeccc
Confidence             234679999988753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.78  E-value=1.3  Score=35.02  Aligned_cols=78  Identities=21%  Similarity=0.333  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+....   ...++..+..|..+      ++.. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE-G-AKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            56789999988775   56666665 4 689999999998887766543221   23467777777533      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence              1267999999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=2  Score=34.60  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +++.+|+.|+++|.   +++.+++. + .+|.+++.+++-++.+.+.+..........++..+..|..+      +++. 
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~-G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLEL-G-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            67889999988775   44555554 4 68999999988777655443311100123578888887643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              2257999999875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.56  E-value=2.9  Score=30.70  Aligned_cols=70  Identities=16%  Similarity=0.081  Sum_probs=42.6

Q ss_pred             eEEEEecCchH--HHHHHHhcCCCcEEEE-EECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGEGS--TAREILRHKTVEKVVM-CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~-VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ||.+||||.-+  ....+...+ ..++++ +|.|++-.+...+.+..       +...-+..|..+.+..  ...|+|++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~--~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATANNY-------PESTKIHGSYESLLED--PEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHTTC-------CTTCEEESSHHHHHHC--TTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccchhcccc-------ccceeecCcHHHhhhc--cccceeee
Confidence            78999998633  233333333 356764 59998766554443332       1222346788888763  56999998


Q ss_pred             cCC
Q 025534          182 DLA  184 (251)
Q Consensus       182 D~~  184 (251)
                      ..+
T Consensus        73 ~tp   75 (184)
T d1ydwa1          73 PLP   75 (184)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            755

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.50  E-value=0.61  Score=37.12  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CCeE-EEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---------H
Q 025534          103 PKTI-FIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L  169 (251)
Q Consensus       103 ~~~V-L~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---------l  169 (251)
                      ++|| |+-|+++|.   +++.+++.. ..+|..++.+++-.+.+.+.+...     .++++++..|..+.         +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAE-----GLSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEEecCCHHHHHHHHHHH
Confidence            5788 555665554   345555543 368999999999888777766432     35678888886432         2


Q ss_pred             hcCCCceeEEEEcCC
Q 025534          170 ESRKESYDVIIGDLA  184 (251)
Q Consensus       170 ~~~~~~fD~Ii~D~~  184 (251)
                      .+..++.|++|.++-
T Consensus        76 ~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAG   90 (275)
T ss_dssp             HHHHSSEEEEEECCC
T ss_pred             HHhcCCcEEEEEcCC
Confidence            122368999999974

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.27  E-value=1.8  Score=33.94  Aligned_cols=75  Identities=16%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +++.+|+-|+++|.   +++.+++. + .+|..++.+++.++.+.+.+..      ..++.++..|..+.      +.. 
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEE-G-AKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            56888888887664   45555554 4 6899999999988877765532      24788888887532      221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++.
T Consensus        77 ~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence              2267999998874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=2  Score=33.70  Aligned_cols=72  Identities=24%  Similarity=0.427  Sum_probs=49.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      ++|.+|+-|+++|.   +++.+++. + .+|..++.+++.++...+..         +++..+..|..+      ++++ 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNS-G-ARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHHH
Confidence            57889999988774   45566664 4 68999999998887666532         356777777643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        74 ~~~~g~iDilVnnAG   88 (250)
T d1ydea1          74 IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence              2257999999875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.09  E-value=2.8  Score=32.82  Aligned_cols=77  Identities=13%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~  171 (251)
                      .+++.+|+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+      ++.+
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASL-G-ASVYTCSRNQKELNDCLTQWRSK-----GFKVEASVCDLSSRSERQELMNT   78 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeeCCCHHHHHHHHHH
Confidence            367889999988774   45666664 4 58999999998887766655432     3567778877642      2221


Q ss_pred             ----CCCceeEEEEcCC
Q 025534          172 ----RKESYDVIIGDLA  184 (251)
Q Consensus       172 ----~~~~fD~Ii~D~~  184 (251)
                          ...+.|+++.++-
T Consensus        79 ~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          79 VANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHHTTTCCCEEEECCC
T ss_pred             HHHHhCCCceEEEECCc
Confidence                2347999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.26  Score=37.09  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=44.1

Q ss_pred             CCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhch---hcccCCCCCCCeEEE-EcchHHHHhcCC
Q 025534          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELV-INDARAELESRK  173 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~---~~~~~~~~~~rv~~~-~~D~~~~l~~~~  173 (251)
                      ..+.++||+||+|+-+-  ...++++ +..+++.+..+++-++.+...+   ..+.    ...+.+. ..|-..+.. .-
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~-~~   88 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENT----DCVVTVTDLADQQAFAE-AL   88 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHS----SCEEEEEETTCHHHHHH-HH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhhc----CcceEeeecccccchhh-hh
Confidence            34678999999984432  3344444 5679999999877665444322   2111    1112222 223233322 12


Q ss_pred             CceeEEEEcCC
Q 025534          174 ESYDVIIGDLA  184 (251)
Q Consensus       174 ~~fD~Ii~D~~  184 (251)
                      ..+|+||...+
T Consensus        89 ~~~diiIN~Tp   99 (182)
T d1vi2a1          89 ASADILTNGTK   99 (182)
T ss_dssp             HTCSEEEECSS
T ss_pred             cccceeccccC
Confidence            57899997765

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.73  E-value=1.3  Score=31.96  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=57.1

Q ss_pred             CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      +||-+||+|.  ..++..++...-..++..+|++++..+--..-+.... .......++..+|..+ +    ..-|+|++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~-~~~~~~~~~~~~d~~~-l----~~adiVVi   75 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-ANLEAHGNIVINDWAA-L----ADADVVIS   75 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GGSSSCCEEEESCGGG-G----TTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc-cccCCccceeccCHHH-h----ccccEEEE
Confidence            6899999864  2344445554435689999999987653221111100 0112345666677433 2    45799988


Q ss_pred             cCCCCC--CCCcc---cCCc--cHHHHHHH---HcccCCCCcEEEEecC
Q 025534          182 DLADPI--EGGPC---YKLY--TKSFYEFV---VKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~--~~~p~---~~l~--~~ef~~~~---~~~~L~pgG~l~~~~~  220 (251)
                      -.-.+.  ...|.   ..+.  +...++++   ++ ...|++++++-++
T Consensus        76 taG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~-~~~p~aivivvtN  123 (146)
T d1hyha1          76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK-ESGFHGVLVVISN  123 (146)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHH-HTTCCSEEEECSS
T ss_pred             eccccccccccCCccHHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecC
Confidence            653211  00111   1121  22333331   23 4679999887554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.70  E-value=0.76  Score=31.84  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEEC--------ChHHHHHHHhchh
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI--------DEEVVEFCKSYLV  147 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEi--------d~~vi~~a~~~~~  147 (251)
                      ..|++|+++|+|-=+  ++..+.+ .+ .+||.+|.        |+++.+.+++.+.
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~-~g-~~Vtlv~~~~~il~~~d~~~~~~~~~~l~   74 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKR-LG-IDSYIFARGNRILRKFDESVINVLENDMK   74 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHT-TT-CEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHHHh-cc-ccceeeehhccccccccHHHHHHHHHHHH
Confidence            458999999998533  2333333 34 69999997        5667777776654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.59  E-value=1  Score=33.29  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ..+.++||++|+|+-+-  ...+.+ . ..+|+.+.-+++-.+...+.+...      .++.....|-     .....+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~-~~~i~I~nR~~~~a~~l~~~~~~~------~~~~~~~~~~-----~~~~~~d   81 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-A-QQNIVLANRTFSKTKELAERFQPY------GNIQAVSMDS-----IPLQTYD   81 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-T-TCEEEEEESSHHHHHHHHHHHGGG------SCEEEEEGGG-----CCCSCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-c-CceeeeccchHHHHHHHHHHHhhc------cccchhhhcc-----ccccccc
Confidence            35678999999986552  233333 3 368999999987777665555422      2344444331     1246899


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +||...+
T Consensus        82 iiIN~tp   88 (171)
T d1p77a1          82 LVINATS   88 (171)
T ss_dssp             EEEECCC
T ss_pred             eeeeccc
Confidence            9998766

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.53  E-value=2.8  Score=30.06  Aligned_cols=110  Identities=18%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             CCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      |.||-+||.|.  ..++..++...-..++..+|+++...+--..-+.... .+ .+..++...+-.+-+    ..-|+|+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~-~~~~~i~~~~~~~~~----~daDvVV   74 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SF-YPTVSIDGSDDPEIC----RDADMVV   74 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GG-STTCEEEEESCGGGG----TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-cc-CCCceeecCCCHHHh----hCCcEEE
Confidence            57899999862  2334444444334689999999987653111111100 01 123344433322222    3469999


Q ss_pred             EcCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +-.-.+...+.. ..|+  .    +++... ++ .-.|+|++++-++
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~-i~-~~~p~ai~ivvtN  119 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPN-LV-KVAPNAIYMLITN  119 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHH-HH-HHCTTSEEEECCS
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHH-HH-hhCCCeEEEEeCC
Confidence            976543311110 0111  1    233344 33 3578998876543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=88.41  E-value=0.17  Score=40.29  Aligned_cols=49  Identities=24%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             hHHHHHHH--hHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChH
Q 025534           87 IYHESLVH--PALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE  137 (251)
Q Consensus        87 ~y~e~l~~--~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~  137 (251)
                      .|.+++..  ..+....+|++|++||+|-++++  .+|.+. + .+|+.+|-++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~-G-~~V~vlE~~~~   64 (370)
T d2iida1          12 DYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA-G-HQVTVLEASER   64 (370)
T ss_dssp             THHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHH-T-CEEEEECSSSS
T ss_pred             cHHHHHHHHhcCCCCCCCCCeEEEECCCHHHHHHHHHHHHC-C-CCEEEEeCCCC
Confidence            36665532  22333456899999999998864  445554 4 58999998764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.26  E-value=2.9  Score=29.82  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=53.5

Q ss_pred             eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ||-+||+|. |. ++..++...-..++..+|++++..+--..-+..... +.+.+.++.. +|..+ +    ...|+|++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~-~~~~~~~i~~~~d~~~-~----~~adiVvi   75 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GIDKYPKIVGGADYSL-L----KGSEIIVV   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-TTTCCCEEEEESCGGG-G----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc-ccCCCCccccCCCHHH-h----ccccEEEE
Confidence            688999753 22 334444444456899999999886531111110000 0112334443 45322 2    46899998


Q ss_pred             cCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      ..-.+...++. ..++  .    .+.... ++ ...|++++++-++
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~-i~-~~~p~aivivvtN  119 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKK-IV-ENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHH-HH-TTSTTCEEEECSS
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHH-HH-hhCCCcEEEEecC
Confidence            77544321221 0111  1    123333 23 3478998887554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.06  E-value=0.81  Score=36.47  Aligned_cols=79  Identities=20%  Similarity=0.307  Sum_probs=53.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+.|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...+  ....++..+..|..+      +++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~l~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQE-G-ANVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC--CCCCceEEEEccCCCHHHHHHHHHHH
Confidence            56889999988774   55666664 4 589999999998887776554221  123578888887643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence              2257999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=2.5  Score=33.05  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=51.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.+.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...    ...++..+..|..+      +++. 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~~----~g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA-G-CSVVVASRNLEEASEAAQKLTEK----YGVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHH----HCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHH----hCCcEEEEEccCCCHHHHHHHHHHH
Confidence            57889999988774   45666664 4 68999999988776555443211    12467777777643      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        78 ~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              2257999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.85  E-value=0.27  Score=35.69  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.5

Q ss_pred             CCeEEEEecCchHH--HHHHHhcCCCcEEEEEECCh
Q 025534          103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       103 ~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~  136 (251)
                      ++||++||+|..++  +..|.+..+..+||.+|.++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            68999999998875  45665654446899999877

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.80  E-value=1.1  Score=33.74  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=45.5

Q ss_pred             CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc---hhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      +||.+||+|.-+.+....-.....+|+.+..|++.++...+.   .....+....+++++ ..|..+.+.    ..|+|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~a~~----~ad~ii   82 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEKAYN----GAEIIL   82 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHHHHT----TCSCEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhhccC----CCCEEE
Confidence            579999999988654332211224899999999999876532   121111112345653 456555553    357777


Q ss_pred             EcCC
Q 025534          181 GDLA  184 (251)
Q Consensus       181 ~D~~  184 (251)
                      +..|
T Consensus        83 iavP   86 (189)
T d1n1ea2          83 FVIP   86 (189)
T ss_dssp             ECSC
T ss_pred             EcCc
Confidence            7654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.57  E-value=1.2  Score=35.64  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CCCeEEEEecCch---HHHHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCCCCCeEEEEcchHHH---------
Q 025534          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAE---------  168 (251)
Q Consensus       102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~~~~~D~~~~---------  168 (251)
                      ++|.+|+-|+.+|   .+++.+++. + .+|+.++.++.-++.+.+.+. ..     ..++..+..|..+.         
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~-G-a~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSL-G-AQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccChHHHHHHhhh
Confidence            5688999998777   355666664 4 699999999987765554432 22     24567777776432         


Q ss_pred             HhcCCCceeEEEEcCC
Q 025534          169 LESRKESYDVIIGDLA  184 (251)
Q Consensus       169 l~~~~~~fD~Ii~D~~  184 (251)
                      +.....+.|+++.++-
T Consensus        97 ~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          97 LIKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHHTCSCSEEEECCC
T ss_pred             hhhhccccchhhhhhh
Confidence            1223478999998875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.52  E-value=1.1  Score=32.07  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHH-HHHhchhcccCCCCCCCeEEEEcchHHH--HhcC-CCcee
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAE--LESR-KESYD  177 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~-~~~fD  177 (251)
                      .+++++|+|.-+  ++..|.+. + .++++||.|++... .+.+..        ...+.++.||+.+.  +++. -++.|
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~-~-~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a~   73 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR-G-QNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-C-CCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccCC
Confidence            479999997443  34444443 3 58999999987543 333321        24688999997653  3332 36789


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~  221 (251)
                      .|++-..+..     .   +.... . ..+.+.|+-.+++....
T Consensus        74 ~vi~~~~~d~-----~---n~~~~-~-~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          74 AILALSDNDA-----D---NAFVV-L-SAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEEECSSCHH-----H---HHHHH-H-HHHHHTSSSCEEEECSS
T ss_pred             EEEEccccHH-----H---HHHHH-H-HHHHhCCCCceEEEEcC
Confidence            9998754321     0   11112 2 24567777777766543

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.21  E-value=1.5  Score=30.33  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             EEEEEECChHHHHHHHhchhcccCCCCCCCeEEE--EcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHH
Q 025534          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFV  204 (251)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~--~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~  204 (251)
                      +|..||=|+.+.+..++.+...      +..+++  ..|+.+.+... ..+||+|++|..-|.       +...++.+. 
T Consensus         3 rILivDD~~~~~~~l~~~L~~~------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~-------~dG~e~~~~-   68 (123)
T d1dz3a_           3 KVCIADDNRELVSLLDEYISSQ------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH-------LDGLAVLER-   68 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS-------SCHHHHHHH-
T ss_pred             EEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC-------CCHHHHHHH-
Confidence            6889999999999999887632      334433  45766655432 357999999986554       223578887 


Q ss_pred             HcccCCCCcEEEE
Q 025534          205 VKPRLNPEGIFVT  217 (251)
Q Consensus       205 ~~~~L~pgG~l~~  217 (251)
                      +++.....-.+++
T Consensus        69 ir~~~~~~~~ii~   81 (123)
T d1dz3a_          69 IRAGFEHQPNVIM   81 (123)
T ss_dssp             HHHHCSSCCEEEE
T ss_pred             HHhcCCCCCeEEE
Confidence            6755443333333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=3.2  Score=32.14  Aligned_cols=72  Identities=18%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~  171 (251)
                      .++|+||+.|+++|.   +++.+++. + .+|..++.+++-++...+..         +.+..+..|..+      .+. 
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~-G-~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~-   72 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHAT-G-ARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALG-   72 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHT-
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHH-
Confidence            367899999998773   55666664 4 58999999998877655432         235556666532      222 


Q ss_pred             CCCceeEEEEcCC
Q 025534          172 RKESYDVIIGDLA  184 (251)
Q Consensus       172 ~~~~fD~Ii~D~~  184 (251)
                      .-++.|+++.++.
T Consensus        73 ~~g~iDilVnnAg   85 (244)
T d1pr9a_          73 SVGPVDLLVNNAA   85 (244)
T ss_dssp             TCCCCCEEEECCC
T ss_pred             HhCCceEEEeccc
Confidence            2368999998875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=1.3  Score=34.82  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      ++|.||+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...   ....++..+..|..+.      ++. 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK-G-AKVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence            56889999987664   44555554 4 68999999998877666544321   1234778888886442      221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++.
T Consensus        77 ~~~~G~iDilVnnAg   91 (254)
T d2gdza1          77 VDHFGRLDILVNNAG   91 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcCeeccccc
Confidence              2257999998875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=1.1  Score=33.18  Aligned_cols=117  Identities=9%  Similarity=0.049  Sum_probs=59.9

Q ss_pred             CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  178 (251)
                      ..+++|+++|.|.=+  ++..+.. .+ .+|+++|+||.-  ..+.+..         ..++.  ...+.    -..-|+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg-~G-~~V~v~e~dp~~--al~A~~d---------G~~v~--~~~~a----~~~adi   82 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRG-FG-ARVIITEIDPIN--ALQAAME---------GYEVT--TMDEA----CQEGNI   82 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-TT-CEEEEECSCHHH--HHHHHHT---------TCEEC--CHHHH----TTTCSE
T ss_pred             ecCCEEEEeccccccHHHHHHHHh-CC-CeeEeeecccch--hHHhhcC---------ceEee--ehhhh----hhhccE
Confidence            468999999998533  2333332 34 699999999932  2332221         11111  12222    246788


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT  249 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~  249 (251)
                      |++-.-.       .+..+.+.|     +.||+ |.++.|.++-...-+.+.+.+....-+++-|++.-|.
T Consensus        83 vvtaTGn-------~~vI~~eh~-----~~MKd-gaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          83 FVTTTGC-------IDIILGRHF-----EQMKD-DAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEECSSC-------SCSBCHHHH-----TTCCT-TEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEecCCC-------ccchhHHHH-----HhccC-CeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            8876432       123455544     45665 5566688764322233333332222223445555443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.59  E-value=1  Score=32.25  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             eEEEEecCc-h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeEEEE
Q 025534          105 TIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (251)
Q Consensus       105 ~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~Ii~  181 (251)
                      ||.+||.|. | .++..++...-..++..+|+++...+....-...... ....+.++.. +| .+-+    ...|+|++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~~~~i~~~~~-~~~~----~dadvvvi   75 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLFDTKVTGSND-YADT----ANSDIVII   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTCCCEEEEESC-GGGG----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcccceEEecCC-HHHh----cCCeEEEE
Confidence            688999763 2 2344444443346899999999876643322111000 0122445543 44 2222    45798888


Q ss_pred             cCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          182 DLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       182 D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      -.-.|...+.. ..++  +    .++.+. +. ...|++++++-++
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~-i~-~~~p~aivivvtN  119 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDN-IM-KHSKNPIIIVVSN  119 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHH-HH-HHCSSCEEEECCS
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHH-hh-ccCCCeEEEEecC
Confidence            76433311111 0111  1    233333 23 2459998876443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=1.1  Score=33.54  Aligned_cols=92  Identities=25%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (251)
Q Consensus       102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~  178 (251)
                      .+.+||+.|+.+  |..+.++++..+ .+|+++--+++-.+.+++.-.          -.++..+-.++.+. ....+|.
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~~k~~~~~~lGa----------d~vi~~~~~~~~~~l~~~~~~~   99 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRESTHEYLKSLGA----------SRVLPRDEFAESRPLEKQVWAG   99 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTE----------EEEEEGGGSSSCCSSCCCCEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcC-CCeEEEecchhHHHHHHhhcc----------ccccccccHHHHHHHHhhcCCe
Confidence            446899987643  446778888766 588899999988888876411          11222221122211 2356888


Q ss_pred             EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~  218 (251)
                      |+ |.-     +       .+.+.. ..+.|+++|+++..
T Consensus       100 vv-D~V-----g-------g~~~~~-~l~~l~~~Griv~~  125 (177)
T d1o89a2         100 AI-DTV-----G-------DKVLAK-VLAQMNYGGCVAAC  125 (177)
T ss_dssp             EE-ESS-----C-------HHHHHH-HHHTEEEEEEEEEC
T ss_pred             eE-EEc-----c-------hHHHHH-HHHHhccccceEee
Confidence            75 432     1       245666 57899999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.13  E-value=3.5  Score=32.23  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +++.+|+.|++.|.   +++.+++. + .+|..++.+++-++...+.+.        .++..+..|..+      ++.+ 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAA-G-ARVVLADVLDEEGAATARELG--------DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHTTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhC--------CceEEEEcccCCHHHHHHHHHHH
Confidence            57889999998874   56666665 4 589999999987765554332        357777777643      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|++|.++-
T Consensus        74 ~~~~g~iDilVnnAg   88 (254)
T d1hdca_          74 REEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCccEEEecCc
Confidence              1257999998874

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=3.5  Score=28.13  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc
Q 025534          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (251)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~  206 (251)
                      .+|..||=|+.+.+..++.+...      ..+ ....++.+.+.. .++||+|++|..-|..       ...++.+. ++
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~------g~v-~~~~~~~~al~~-~~~~dlillD~~mP~~-------~G~~~~~~-lr   66 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQL------GRV-KTFLTGEDFLND-EEAFHVVVLDVMLPDY-------SGYEICRM-IK   66 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTT------EEE-EEESSHHHHHHC-CSCCSEEEEESBCSSS-------BHHHHHHH-HH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhC------CEE-EEECCHHHHHhc-CCCCCEEEEeCccccc-------chhHHHHH-Hh
Confidence            37899999999999999887632      133 345788888864 4679999999865432       23467776 55


Q ss_pred             ccCCCCcEEEEec
Q 025534          207 PRLNPEGIFVTQA  219 (251)
Q Consensus       207 ~~L~pgG~l~~~~  219 (251)
                      . ..|.-.+++-+
T Consensus        67 ~-~~~~~~ii~it   78 (120)
T d1p2fa2          67 E-TRPETWVILLT   78 (120)
T ss_dssp             H-HCTTSEEEEEE
T ss_pred             h-cCCCCcEEEEe
Confidence            3 34554444443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.04  E-value=3.9  Score=31.74  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+-|+++|.   +++.+++. + .+|..++.+++-++...+.+.        .+...+..|..+      ++++ 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-G-~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAE-G-AKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHHH
Confidence            56889999988774   55666664 4 589999999988876665442        346667777532      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        75 ~~~~g~idilinnAG   89 (244)
T d1nffa_          75 VTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCeEEEECCc
Confidence              2257999999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=1.3  Score=34.83  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~--  170 (251)
                      +++.+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      +.  
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~~~~~~~~l~~~-----g~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATA-G-ASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            67889998887664   34455543 3 68999999998888776655432     25678888886542      21  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++-
T Consensus        83 ~~~~g~iDilvnnAG   97 (255)
T d1fmca_          83 ISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHcCCCCEeeeCCc
Confidence             12257999998874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=85.92  E-value=4.9  Score=29.28  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=57.0

Q ss_pred             CCeEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..||-+||+|. |.. +..++...-..++..+|++++..+--..-+... ..+......+..+|-.+ +    ..-|+|+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~-~~~~~~~~~~~~~d~~~-~----~~adiVV   93 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG-SLFLQTPKIVADKDYSV-T----ANSKIVV   93 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGCCCSEEEECSSGGG-G----TTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc-ccccCCCeEEeccchhh-c----ccccEEE
Confidence            46999999976 443 344444444568999999987754211111110 00112233444455222 1    4689999


Q ss_pred             EcCCCCCCCCcc-cCCcc------HHHHHHHHcccCCCCcEEEEecC
Q 025534          181 GDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       181 ~D~~~~~~~~p~-~~l~~------~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      +-+-.+...+.. ..+..      +++... +++ ..|+|++++-++
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~-i~~-~~p~aiiivvtN  138 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQ-IVK-YSPDCIIIVVSN  138 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHH-HHH-HCTTCEEEECSS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHH-HHh-cCCCcEEEEeCC
Confidence            876543311111 11211      233444 333 478999887543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.87  E-value=3  Score=32.53  Aligned_cols=73  Identities=23%  Similarity=0.333  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+        .+++..+..|..+      +++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~--------~~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVRE-G-ARVAIADINLEAARATAAEI--------GPAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHT-T-EEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHh--------CCceEEEEeeCCCHHHHHHHHHHH
Confidence            56789999988774   55666664 4 68999999988777655433        2456777777633      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        74 ~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          74 LDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCccEEEeecc
Confidence              2257999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.71  E-value=5.7  Score=30.78  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             CCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh---
Q 025534          103 PKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE---  170 (251)
Q Consensus       103 ~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~---  170 (251)
                      +|-+|+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+.      ++   
T Consensus         2 gKValITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKE-G-LRVFVCARGEEGLRTTLKELREA-----GVEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            3456888877664   44555554 4 68999999998888776655432     24678888776432      22   


Q ss_pred             cCCCceeEEEEcCC
Q 025534          171 SRKESYDVIIGDLA  184 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~  184 (251)
                      +.-++.|++|.++-
T Consensus        75 ~~~g~iDilVnnAG   88 (257)
T d2rhca1          75 ERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHTCSCSEEEECCC
T ss_pred             HHhCCCCEEEeccc
Confidence            12367999998874

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=85.45  E-value=0.91  Score=37.95  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcC-------CCcEEEEEECChHHHHHHHhch
Q 025534          100 HPNPKTIFIMGGGEGSTAREILRHK-------TVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~~~~l~~~~-------~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      .+.+.+|+++|.|.|.+++-+++..       ...++..||.++...+.-++.+
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            3455689999999999988776531       2346899999999877766554

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.39  E-value=1.4  Score=32.42  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD  177 (251)
                      ..+.++||+||+|+-+  +...+.+. +. +|+.+.-+++-.+...+.+...      ..++...-|-     .....+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~-g~-~i~I~nRt~~ka~~l~~~~~~~------~~~~~~~~~~-----~~~~~~d   81 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSL-DC-AVTITNRTVSRAEELAKLFAHT------GSIQALSMDE-----LEGHEFD   81 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TC-EEEEECSSHHHHHHHHHHTGGG------SSEEECCSGG-----GTTCCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhccc-ce-EEEeccchHHHHHHHHHHHhhc------cccccccccc-----ccccccc
Confidence            3567899999998554  33444443 43 7999999887766555544422      1233332221     1235799


Q ss_pred             EEEEcCC
Q 025534          178 VIIGDLA  184 (251)
Q Consensus       178 ~Ii~D~~  184 (251)
                      +||.-.+
T Consensus        82 liIN~Tp   88 (170)
T d1nyta1          82 LIINATS   88 (170)
T ss_dssp             EEEECCS
T ss_pred             eeecccc
Confidence            9987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.79  E-value=1.4  Score=34.78  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+.|++.|.   +++.+++. + .+|..++.+++-++.+.+.+...+  ....++..+..|..+      .+.. 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFARE-G-AKVTITGRHAERLEETRQQILAAG--VSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC--CCcCceEEEEccCCCHHHHHHHHHHH
Confidence            56778888887664   45566654 4 689999999988877666543221  123578888888742      2222 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        80 ~~~~g~iDilvnnAG   94 (264)
T d1spxa_          80 LGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEeecccc
Confidence              2267999998863

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.40  E-value=4.9  Score=27.95  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=47.5

Q ss_pred             cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc
Q 025534          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (251)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~  206 (251)
                      .+|..||=|+...+..++.+...+     -++ ....|+.+.++...+.||+|++|..-|...+       .++.+. ++
T Consensus         8 ~rILvVDD~~~~~~~l~~~L~~~G-----~~v-~~a~~g~eal~~l~~~~dlillD~~mP~~dG-------~el~~~-ir   73 (134)
T d1dcfa_           8 LKVLVMDENGVSRMVTKGLLVHLG-----CEV-TTVSSNEECLRVVSHEHKVVFMDVCMPGVEN-------YQIALR-IH   73 (134)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHCCTTCSEEEEECCSSTTTT-------THHHHH-HH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHhhcCCCeEEEEeccCCCch-------HHHHHH-HH
Confidence            689999999999998888776432     123 3557888887765678999999987554322       255666 55


Q ss_pred             cc
Q 025534          207 PR  208 (251)
Q Consensus       207 ~~  208 (251)
                      +.
T Consensus        74 ~~   75 (134)
T d1dcfa_          74 EK   75 (134)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.37  E-value=3  Score=30.78  Aligned_cols=94  Identities=14%  Similarity=0.170  Sum_probs=54.0

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEE--ECChHHHHHHHhch--hcccCCCCCCCeEEE-EcchHHHHhcCCCcee
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMC--DIDEEVVEFCKSYL--VVNKEAFSDPRLELV-INDARAELESRKESYD  177 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~V--Eid~~vi~~a~~~~--~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD  177 (251)
                      +|.+||+|.-+.  +..+++..  .+|+.+  +.+++.++..++.-  +......  +...+. ..|..+.+    +..|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g--~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~--~~~~i~~~~~~~~~~----~~ad   73 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRLGVKL--NGVEIFWPEQLEKCL----ENAE   73 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTTTBCC--CSEEEECGGGHHHHH----TTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCC--CEEEEEEecccHHHHHHHhhhhhhhhhcchh--ccccccccccHHHHH----hccc
Confidence            688999998765  44455432  477777  45777777655432  1111111  122232 34444444    4689


Q ss_pred             EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (251)
Q Consensus       178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~  216 (251)
                      +|++-.+.         ...++.+++ +...|+++-+++
T Consensus        74 ~Ii~avps---------~~~~~~~~~-l~~~l~~~~ii~  102 (180)
T d1txga2          74 VVLLGVST---------DGVLPVMSR-ILPYLKDQYIVL  102 (180)
T ss_dssp             EEEECSCG---------GGHHHHHHH-HTTTCCSCEEEE
T ss_pred             hhhcccch---------hhhHHHHHh-hccccccceecc
Confidence            99987542         123577888 788887765444

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.24  E-value=1.4  Score=30.62  Aligned_cols=46  Identities=28%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh--------HHHHHHHhchhc
Q 025534          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE--------EVVEFCKSYLVV  148 (251)
Q Consensus       101 ~~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~--------~vi~~a~~~~~~  148 (251)
                      ..|+++++||+|- |. ++..+.+ .+ .+||.+|..+        ++.+.+++++..
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~-lG-~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~   76 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSR-LG-SKVTVVEFQPQIGASMDGEVAKATQKFLKK   76 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH-TT-CEEEEECSSSSSSSSSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHh-hC-cceeEEEeccccchhhhhhhHHHHHHHHHh
Confidence            3578999999973 33 2333333 34 6999999755        777777777653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.18  E-value=1.8  Score=33.94  Aligned_cols=77  Identities=13%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCCCCCCeEEEEcchHHH------Hh
Q 025534          101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFSDPRLELVINDARAE------LE  170 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~~~~rv~~~~~D~~~~------l~  170 (251)
                      -+.|.||+-|++.|.   +++.+++. + .+|..++.+++-++.+.+.+ ...     ..++..+..|..+.      ++
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~-G-a~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~   79 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAA-G-ANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQ   79 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHT-T-EEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHH
Confidence            467889999987664   45666664 4 68999999987655443333 221     24677788776432      21


Q ss_pred             ---cCCCceeEEEEcCC
Q 025534          171 ---SRKESYDVIIGDLA  184 (251)
Q Consensus       171 ---~~~~~fD~Ii~D~~  184 (251)
                         +.-++.|+++.++.
T Consensus        80 ~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          80 QIDADLGPISGLIANAG   96 (260)
T ss_dssp             HHHHHSCSEEEEEECCC
T ss_pred             HHHHHhCCCcEeccccc
Confidence               22368999998874

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.09  E-value=2.9  Score=29.08  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh---c---CCCceeEEEEcCCCCCCCCcccCCccHHHH
Q 025534          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---S---RKESYDVIIGDLADPIEGGPCYKLYTKSFY  201 (251)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~---~---~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~  201 (251)
                      +|..||=|+...+..++.+...+    ...++. ..|+.+.++   .   ..++||+|++|..-|.       ....+..
T Consensus         3 rVLvVDD~~~~~~~l~~~L~~~g----~~~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~-------~dG~el~   70 (128)
T d2r25b1           3 KILVVEDNHVNQEVIKRMLNLEG----IENIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-------VDGLLST   70 (128)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHTT----CCCEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-------SCHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcC----CeEEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCC-------CCHHHHH
Confidence            68899999999999888876432    123443 456655443   2   3578999999986553       2234677


Q ss_pred             HHHHcccCCCCcEEEEe
Q 025534          202 EFVVKPRLNPEGIFVTQ  218 (251)
Q Consensus       202 ~~~~~~~L~pgG~l~~~  218 (251)
                      +. +++...+.-.+++-
T Consensus        71 ~~-ir~~~~~~~piI~l   86 (128)
T d2r25b1          71 KM-IRRDLGYTSPIVAL   86 (128)
T ss_dssp             HH-HHHHSCCCSCEEEE
T ss_pred             HH-HHHccCCCCeEEEE
Confidence            77 66554544434443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.04  E-value=1.7  Score=31.24  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (251)
Q Consensus       103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~  146 (251)
                      .++||+||+|-=+  ++..|.+. + -+|+++|.+.+-.+...+.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~-g-~~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS-G-IKVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEECChHHHHHHHhcc
Confidence            4799999986433  34555554 3 48999999999888766654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.03  E-value=2  Score=33.84  Aligned_cols=76  Identities=20%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.+.||+-|+++|.   +++.+++. + .+|..++.+++-++.+.+.+...     ..++..+..|..+      .++. 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~-G-a~V~~~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF-G-AVIHTCARNEYELNECLSKWQKK-----GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhc-----CCceEEEeccCCCHHHHHHHHHHH
Confidence            57889999988775   55666665 4 58999999998877766655432     2467788777642      2222 


Q ss_pred             ---CCCceeEEEEcCC
Q 025534          172 ---RKESYDVIIGDLA  184 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~  184 (251)
                         ...+.|+++.++-
T Consensus        80 ~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          80 SSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHTTCCSEEEEECC
T ss_pred             HHHhCCCccccccccc
Confidence               1367999999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.93  E-value=4.6  Score=29.01  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=41.3

Q ss_pred             CCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (251)
Q Consensus       103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  180 (251)
                      ..||-+||+|.  +.++..+.. .+..++..+|++++..+--..-+.... .+...+.++...+-.+-+    ...|+|+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~-~~l~el~L~Di~~~~~~g~a~Dl~~~~-~~~~~~~~v~~~~~~~~~----~~advvv   76 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ-KNLGDVVLFDIVKNMPHGKALDTSHTN-VMAYSNCKVSGSNTYDDL----AGADVVI   76 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSSSHHHHHHHHHHTHH-HHHTCCCCEEEECCGGGG----TTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-CCCCeEEEEeccCCcceeeecchhhhc-cccCCCcEEEeccccccc----CCCcEEE
Confidence            36899999874  334444444 456799999999977653322111100 001123344433322222    3588888


Q ss_pred             EcCCC
Q 025534          181 GDLAD  185 (251)
Q Consensus       181 ~D~~~  185 (251)
                      +-.-.
T Consensus        77 itag~   81 (150)
T d1t2da1          77 VTAGF   81 (150)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            87643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.79  E-value=0.48  Score=36.59  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CCeEEEEecCchHHH--HHHHhcCCCcEEEEEECCh
Q 025534          103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       103 ~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~  136 (251)
                      .|||++||+|-++++  .+|.+ .+ .+|+.+|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~-~G-~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI-HG-LNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TS-CEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-CC-CCEEEEeCCC
Confidence            479999999977753  44444 34 5899999754

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=83.56  E-value=3  Score=28.51  Aligned_cols=77  Identities=13%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHH
Q 025534          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFV  204 (251)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~  204 (251)
                      .+|..||=|+.+.+..++.+...+  +   ++. ...++.+.+...  ...||+|++|.--|..       ...++++. 
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g--~---~v~-~~~~~~~al~~l~~~~~~dliilD~~lp~~-------~G~el~~~-   68 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLG--A---EVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVDL-------SIFSLLDI-   68 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT--C---EEE-EESSHHHHHHTGGGGGSCSEEEEETTCTTS-------CHHHHHHH-
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcC--C---CeE-EECCHHHHHHHHHhcCCCCEEEEeCCCCCC-------CHHHHHHH-
Confidence            489999999999999999886432  1   222 345666666432  3579999999865542       23477887 


Q ss_pred             HcccCCCCcEEEE
Q 025534          205 VKPRLNPEGIFVT  217 (251)
Q Consensus       205 ~~~~L~pgG~l~~  217 (251)
                      +++.-+.=.++++
T Consensus        69 ir~~~~~~pii~l   81 (118)
T d2b4aa1          69 VKEQTKQPSVLIL   81 (118)
T ss_dssp             HTTSSSCCEEEEE
T ss_pred             HHhcCCCCcEEEE
Confidence            6765433344443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=5.5  Score=30.74  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~--  170 (251)
                      ++|.+|+-|+++|.   +++.+++. + .+|..++.+++-++...+.+.        .+...+..|..+      .++  
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~-G-~~Vv~~~r~~~~l~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAAR-G-AKVIGTATSENGAQAISDYLG--------ANGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhC--------CCCcEEEEEecCHHHhhhhhhhh
Confidence            56788888887764   45555554 4 689999999988877665543        245566666532      222  


Q ss_pred             -cCCCceeEEEEcCC
Q 025534          171 -SRKESYDVIIGDLA  184 (251)
Q Consensus       171 -~~~~~fD~Ii~D~~  184 (251)
                       +.-++.|+++.++.
T Consensus        73 ~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          73 RAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             hcccCCcceehhhhh
Confidence             22368999998874

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.08  E-value=4.4  Score=28.64  Aligned_cols=107  Identities=25%  Similarity=0.338  Sum_probs=56.0

Q ss_pred             eEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (251)
Q Consensus       105 ~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D  182 (251)
                      ||-+||.|. |.. +..++...-..++..+|++++..+.-..-+.... .+ .++..+..+|..+ +    ..-|+|++-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~-~~-~~~~~~~~~~~~~-~----~~adivvit   74 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT-PF-TRRANIYAGDYAD-L----KGSDVVIVA   74 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GG-SCCCEEEECCGGG-G----TTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc-cc-cccccccCCcHHH-h----cCCCEEEEe
Confidence            688999875 443 3333344334689999999977663222111100 11 2456666666433 2    357999987


Q ss_pred             CCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534          183 LADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG  220 (251)
Q Consensus       183 ~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~  220 (251)
                      .-.+...+.. ..++  .    .+..+. + ....|++++++-++
T Consensus        75 ag~~~~~g~~r~dl~~~N~~I~~~i~~~-i-~~~~p~aivivvtN  117 (140)
T d1a5za1          75 AGVPQKPGETRLQLLGRNARVMKEIARN-V-SKYAPDSIVIVVTN  117 (140)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHH-H-HHHCTTCEEEECSS
T ss_pred             cccccCCCcchhhhhccccchHHHHHHH-H-HhcCCCcEEEEeCC
Confidence            6433311111 0111  1    123333 2 35679998876543

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=83.02  E-value=3.8  Score=27.94  Aligned_cols=78  Identities=13%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHH
Q 025534          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV  205 (251)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~  205 (251)
                      .+|..||=|+.+.+..++.+...+  +   ++ ....|+.+.+... ..+||+|++|..-|..       ...++.+. +
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g--~---~v-~~a~~g~eal~~~~~~~~dlillD~~mP~~-------~G~el~~~-l   67 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEG--Y---QT-FQAANGLQALDIVTKERPDLVLLDMKIPGM-------DGIEILKR-M   67 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT--C---EE-EEESSHHHHHHHHHHHCCSEEEEESCCTTC-------CHHHHHHH-H
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcC--C---EE-EEeCCHHHHHHHHHhCCCCEEEEeccCCCC-------CHHHHHHH-H
Confidence            589999999999999998876432  1   22 2456777665432 3579999999865542       23477887 5


Q ss_pred             cccCCCCcEEEEec
Q 025534          206 KPRLNPEGIFVTQA  219 (251)
Q Consensus       206 ~~~L~pgG~l~~~~  219 (251)
                      ++ ..++-.+++-+
T Consensus        68 r~-~~~~~pvi~lt   80 (119)
T d1peya_          68 KV-IDENIRVIIMT   80 (119)
T ss_dssp             HH-HCTTCEEEEEE
T ss_pred             HH-hCCCCcEEEEe
Confidence            64 44555455444

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.99  E-value=3.9  Score=30.59  Aligned_cols=109  Identities=12%  Similarity=0.063  Sum_probs=57.6

Q ss_pred             eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCC-------CCCCeEEEEcchHHHHhcCCC
Q 025534          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRKE  174 (251)
Q Consensus       105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~-------~~~rv~~~~~D~~~~l~~~~~  174 (251)
                      +|.++|+|-=++  +..+++. + -+|+++|+|++.++..++-. +......       ...+--....|..+.+    +
T Consensus         2 kI~ViGlG~vGl~~a~~la~~-g-~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i----~   75 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR-G-HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV----L   75 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH----H
T ss_pred             EEEEECCCHhHHHHHHHHHhC-C-CcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHH----h
Confidence            688999986553  4444443 3 48999999999998776531 1110000       0011123334444444    2


Q ss_pred             ceeEEEEcCCCCCCC--CcccCCccHHHHHHH--HcccCCCCcEEEEecC
Q 025534          175 SYDVIIGDLADPIEG--GPCYKLYTKSFYEFV--VKPRLNPEGIFVTQAG  220 (251)
Q Consensus       175 ~fD~Ii~D~~~~~~~--~p~~~l~~~ef~~~~--~~~~L~pgG~l~~~~~  220 (251)
                      ..|+|++..+-|...  .+ ..-+.....+.+  +.+.++++.++++.+.
T Consensus        76 ~~d~i~i~VpTP~~~~~~~-d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          76 DSDVSFICVGTPSKKNGDL-DLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             TCSEEEECCCCCBCTTSSB-CCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             hCCEEEEecCccccccccc-cchhhhhhhhhhhheeecccCCcceeeccc
Confidence            478888887654321  11 111112222220  2355667888888764

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=82.81  E-value=4.3  Score=28.50  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc
Q 025534          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (251)
Q Consensus       128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~  206 (251)
                      +|..||=|+.+.+..++.+...+     -.+. ...|+.+.+... ...||+|++|..-|..       ...++++. ++
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~dlil~D~~mP~~-------~G~el~~~-lr   67 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAG-----FTVS-SFASATEALAGLSADFAGIVISDIRMPGM-------DGLALFRK-IL   67 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTT-----CEEE-EESCHHHHHHTCCTTCCSEEEEESCCSSS-------CHHHHHHH-HH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCC-----CEEE-EeCChHHHHHHHhccCcchHHHhhccCCC-------CHHHHHHH-HH
Confidence            68899999999999998876432     1333 447888877653 4789999999865542       23477777 56


Q ss_pred             ccCCCCcEEEEec
Q 025534          207 PRLNPEGIFVTQA  219 (251)
Q Consensus       207 ~~L~pgG~l~~~~  219 (251)
                      +. .|+--+++-+
T Consensus        68 ~~-~~~~pvI~lT   79 (140)
T d1qkka_          68 AL-DPDLPMILVT   79 (140)
T ss_dssp             HH-CTTSCEEEEE
T ss_pred             Hh-CCCCcEEEEE
Confidence            53 5655444433

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=3.8  Score=28.59  Aligned_cols=78  Identities=15%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE--EcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHH
Q 025534          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (251)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~--~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~  203 (251)
                      .+|..||=++.+.+..++.+...      +.+.++  ..|+.+.++.. ..+||+|++|..-|..       ...++++.
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~------~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~-------~G~el~~~   69 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMA------PDITVVGEASNGEQGIELAESLDPDLILLDLNMPGM-------NGLETLDK   69 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTC------TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTS-------CHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCCC-------CHHHHHHH
Confidence            48999999999999988877532      344443  56887776532 3579999999865542       23577887


Q ss_pred             HHcccCCCCcEEEEec
Q 025534          204 VVKPRLNPEGIFVTQA  219 (251)
Q Consensus       204 ~~~~~L~pgG~l~~~~  219 (251)
                       +++ ..|...+++-+
T Consensus        70 -ir~-~~~~~~vivlt   83 (138)
T d1a04a2          70 -LRE-KSLSGRIVVFS   83 (138)
T ss_dssp             -HHH-SCCCSEEEEEE
T ss_pred             -HHh-hCCCCCEEEEE
Confidence             654 45666555544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.52  E-value=0.52  Score=34.84  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             CCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHH
Q 025534          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVE  140 (251)
Q Consensus       102 ~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~  140 (251)
                      .++||++||+|-.++  +.+|.++ +...|+.+|-++.+-.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            468999999998886  4555554 4446999998876643

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=82.31  E-value=0.49  Score=38.50  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             eEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH---HHhcCCCceeE
Q 025534          105 TIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELESRKESYDV  178 (251)
Q Consensus       105 ~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~---~l~~~~~~fD~  178 (251)
                      |||+.|+ +|.++..++++   .+..+|.++|....-.    .  ..    ...++++++.+|..+   .++...+.+|.
T Consensus         2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~----~--~~----~~~~~~~~i~~Di~~~~~~~~~~~~~~d~   70 (342)
T d2blla1           2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAI----S--RF----LNHPHFHFVEGDISIHSEWIEYHVKKCDV   70 (342)
T ss_dssp             EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGG----G--GG----TTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcch----h--hh----ccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence            7999987 77666544432   2334799998753211    1  11    135789999999753   22222246999


Q ss_pred             EEEcCC
Q 025534          179 IIGDLA  184 (251)
Q Consensus       179 Ii~D~~  184 (251)
                      |+.-+.
T Consensus        71 Vih~a~   76 (342)
T d2blla1          71 VLPLVA   76 (342)
T ss_dssp             EEECBC
T ss_pred             cccccc
Confidence            998765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.21  E-value=4.8  Score=31.32  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-  171 (251)
                      +.|.+|+.|+++|.   +++.+++. + .+|..++.+++.++...+.++        .+..++..|..+      .+.. 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-G-a~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGE-G-AKVAFSDINEAAGQQLAAELG--------ERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHC--------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhC--------CCeEEEEeecCCHHHHHHHHHHH
Confidence            56788988987763   45566654 4 689999999988776655432        245555555432      2221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++-
T Consensus        75 ~~~~g~iDilVnnAG   89 (253)
T d1hxha_          75 QRRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHHHCSCCEEEECCC
T ss_pred             HHHhCCCCeEEeccc
Confidence              2367899999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=82.20  E-value=0.58  Score=36.68  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~  136 (251)
                      +.++||++|||+-+  ++..|++. ++.+++.||-|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCcc
Confidence            45799999998655  35556664 688999999764

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.76  E-value=4.6  Score=31.11  Aligned_cols=75  Identities=15%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      .++.||+-|+.+|.   +++.+++......|.++..+++-++..++.        ...++.++..|..+.      +.. 
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~--------~~~~~~~~~~Dvs~~~~v~~~~~~i   73 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--------KDSRVHVLPLTVTCDKSLDTFVSKV   73 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--------CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh--------hCCceEEEEEecCCHHHHHHHHHHH
Confidence            35889999998774   566666653223688888887665544432        235788888887432      211 


Q ss_pred             --C--CCceeEEEEcCC
Q 025534          172 --R--KESYDVIIGDLA  184 (251)
Q Consensus       172 --~--~~~fD~Ii~D~~  184 (251)
                        .  ....|+++.++-
T Consensus        74 ~~~~~~~~idilinnAG   90 (250)
T d1yo6a1          74 GEIVGSDGLSLLINNAG   90 (250)
T ss_dssp             HHHHGGGCCCEEEECCC
T ss_pred             HHHhCCCCeEEEEEcCc
Confidence              1  234899999974

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=4.1  Score=31.47  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=47.6

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--Hh---cCC
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LE---SRK  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~---~~~  173 (251)
                      +++++|+.|+++|.   +++.+++. + .+|..++.+++-++...+..         +++..+..|..+.  ++   +.-
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~-G-a~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHAS-G-AKVVAVTRTNSDLVSLAKEC---------PGIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHHc
Confidence            57899999988774   45566664 4 68999999987766554432         3455666665432  11   123


Q ss_pred             CceeEEEEcCC
Q 025534          174 ESYDVIIGDLA  184 (251)
Q Consensus       174 ~~fD~Ii~D~~  184 (251)
                      ++.|+++.++-
T Consensus        73 g~iDilVnnAg   83 (242)
T d1cyda_          73 GPVDLLVNNAA   83 (242)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCeEEEECCc
Confidence            67999998874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=81.12  E-value=7.9  Score=28.01  Aligned_cols=114  Identities=14%  Similarity=0.024  Sum_probs=66.6

Q ss_pred             CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (251)
Q Consensus       104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  181 (251)
                      .+|-.||+|.=+  +++.|++. + -+|++.|.+++-++...+.....       ....-.....+... .-...|.|++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~-~~~~~~~ii~   72 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH-G-FVVCAFNRTVSKVDDFLANEAKG-------TKVLGAHSLEEMVS-KLKKPRRIIL   72 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-T-CCEEEECSSTHHHHHHHHTTTTT-------SSCEECSSHHHHHH-HBCSSCEEEE
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC-C-CeEEEEcCCHHHHHHHHHhcccc-------ccccchhhhhhhhh-hhcccceEEE
Confidence            578899998655  56677775 3 48999999999888765542111       11111222333332 2356788888


Q ss_pred             cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (251)
Q Consensus       182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~  241 (251)
                      ..+...        ...+.+.. +...+++|-+++ +..+    ..++..+++.+.+.+.
T Consensus        73 ~~~~~~--------~v~~v~~~-l~~~~~~g~iii-d~sT----~~~~~~~~~~~~~~~~  118 (176)
T d2pgda2          73 LVKAGQ--------AVDNFIEK-LVPLLDIGDIII-DGGN----SEYRDTMRRCRDLKDK  118 (176)
T ss_dssp             CSCTTH--------HHHHHHHH-HHHHCCTTCEEE-ECSC----CCHHHHHHHHHHHHHT
T ss_pred             ecCchH--------HHHHHHHH-HHhccccCcEEE-ecCc----chhHHHHHHHHHHHhc
Confidence            765421        12356677 677888876555 4432    2344455666666554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.07  E-value=6.4  Score=30.25  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=49.5

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~-  171 (251)
                      +++.+|+.|++.|.   +++.+++. + .+|..++.+.+.++...+.+        ..++..+..|..+.      +.+ 
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~-G-~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dls~~~~i~~~~~~i   73 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFARE-G-ASLVAVDREERLLAEAVAAL--------EAEAIAVVADVSDPKAVEAVFAEA   73 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHHTC--------CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHc--------CCceEEEEecCCCHHHHHHHHHHH
Confidence            57889999998764   45555554 3 69999999998776555432        24677777776432      221 


Q ss_pred             --CCCceeEEEEcCC
Q 025534          172 --RKESYDVIIGDLA  184 (251)
Q Consensus       172 --~~~~fD~Ii~D~~  184 (251)
                        .-++.|+++.++.
T Consensus        74 ~~~~g~iDiLinnAg   88 (241)
T d2a4ka1          74 LEEFGRLHGVAHFAG   88 (241)
T ss_dssp             HHHHSCCCEEEEGGG
T ss_pred             HHHhCCccEeccccc
Confidence              1257999999875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=81.02  E-value=0.52  Score=36.42  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=25.2

Q ss_pred             CCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECCh
Q 025534          101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (251)
Q Consensus       101 ~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~  136 (251)
                      |...||++||+|-.+++  ..|++ .+ -+|+.+|-++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~-~G-~~v~v~Er~~   37 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRD-AG-VDVDVYERSP   37 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH-TT-CEEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHH-CC-CCEEEEeCCC
Confidence            56789999999988864  34444 45 4899999754

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.72  E-value=8.3  Score=28.00  Aligned_cols=72  Identities=19%  Similarity=0.313  Sum_probs=39.2

Q ss_pred             CeEEEEecCchHH---HHHHHhcC---CCcEEEEEECChHHHH--HHH----hchhcccCCCCCCCeEE-EEcchHHHHh
Q 025534          104 KTIFIMGGGEGST---AREILRHK---TVEKVVMCDIDEEVVE--FCK----SYLVVNKEAFSDPRLEL-VINDARAELE  170 (251)
Q Consensus       104 ~~VL~iG~G~G~~---~~~l~~~~---~~~~v~~VEid~~vi~--~a~----~~~~~~~~~~~~~rv~~-~~~D~~~~l~  170 (251)
                      .||-+||+|+..+   ...++...   +..++..+|+++...+  ...    +.+...     ...+++ ...|-.+-+ 
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~td~~~al-   75 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKA-----GVPIEIHLTLDRRRAL-   75 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-----TCCCEEEEESCHHHHH-
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhc-----CCCceeeecCCchhhc-
Confidence            3789999986543   22333322   2358999999886532  222    222211     122333 334544444 


Q ss_pred             cCCCceeEEEEcCC
Q 025534          171 SRKESYDVIIGDLA  184 (251)
Q Consensus       171 ~~~~~fD~Ii~D~~  184 (251)
                         +..|+|++-..
T Consensus        76 ---~gaDvVv~ta~   86 (169)
T d1s6ya1          76 ---DGADFVTTQFR   86 (169)
T ss_dssp             ---TTCSEEEECCC
T ss_pred             ---CCCCEEEEccc
Confidence               35799998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=1.2  Score=34.78  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-----HHHHhcCC
Q 025534          102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELESRK  173 (251)
Q Consensus       102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-----~~~l~~~~  173 (251)
                      +.|.||+.|++.|.   +++.++++ + .+|.+++.+++-++...+..          .++....|.     .+.....-
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~-G-~~Vi~~~r~~~~l~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~   72 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFARE-G-AKVIATDINESKLQELEKYP----------GIQTRVLDVTKKKQIDQFANEV   72 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHGGGGGST----------TEEEEECCTTCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHhcc----------CCceeeeecccccccccccccc
Confidence            56889999987664   45666665 3 69999999987766544432          233333333     22222234


Q ss_pred             CceeEEEEcCC
Q 025534          174 ESYDVIIGDLA  184 (251)
Q Consensus       174 ~~fD~Ii~D~~  184 (251)
                      ...|.++.++.
T Consensus        73 ~~id~lVn~ag   83 (245)
T d2ag5a1          73 ERLDVLFNVAG   83 (245)
T ss_dssp             SCCSEEEECCC
T ss_pred             ccceeEEeccc
Confidence            67999988765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.47  E-value=2.8  Score=28.38  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             CCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHH
Q 025534          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEV  138 (251)
Q Consensus       100 ~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~v  138 (251)
                      ...|++|++||+|--++  +..+.+. + .+||.+|..+.+
T Consensus        19 ~~~p~~v~IiGgG~ig~E~A~~l~~~-G-~~Vtlve~~~~i   57 (117)
T d1ebda2          19 GEVPKSLVVIGGGYIGIELGTAYANF-G-TKVTILEGAGEI   57 (117)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESSSSS
T ss_pred             hhcCCeEEEECCCccceeeeeeeccc-c-cEEEEEEeccee
Confidence            34579999999976553  3444443 4 689999976653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=80.32  E-value=0.97  Score=36.09  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             CeEEEEecCchHHHHHHHhc---CCCcEEEEEE-CChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--Hhc--CCCc
Q 025534          104 KTIFIMGGGEGSTAREILRH---KTVEKVVMCD-IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES--RKES  175 (251)
Q Consensus       104 ~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VE-id~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~--~~~~  175 (251)
                      .|||+.|+ +|.++.++.+.   .+ .+|+++| ++..-.....+.+.      ..++++++.+|..+.  +..  ...+
T Consensus         1 ~KILVTGa-tGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~~------~~~~~~~i~~Di~~~~~l~~~~~~~~   72 (338)
T d1orra_           1 AKLLITGG-CGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLS------SLGNFEFVHGDIRNKNDVTRLITKYM   72 (338)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHH------TTCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEECC-CcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHhh------ccCCcEEEEcccCCHHHHHHHHHhcC
Confidence            37998887 57766554431   23 5899998 33222111111111      246899999998642  221  1235


Q ss_pred             eeEEEEcCC
Q 025534          176 YDVIIGDLA  184 (251)
Q Consensus       176 fD~Ii~D~~  184 (251)
                      +|.|+.-+.
T Consensus        73 ~d~Vih~aa   81 (338)
T d1orra_          73 PDSCFHLAG   81 (338)
T ss_dssp             CSEEEECCC
T ss_pred             CceEEeecc
Confidence            899998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.25  E-value=5.5  Score=30.87  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             CCCeEEEEecCch---HHHHHHHhcCCCcEEEE-EECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc
Q 025534          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVM-CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (251)
Q Consensus       102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~-VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~  171 (251)
                      .+|.||+.|+++|   .+++.+++. + .+|.. ...+++..+.+.+.+...     ..++..+..|..+      ++.+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~-G-~~Vvi~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRR-G-ASVVVNYGSSSKAAEEVVAELKKL-----GAQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESSCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc-C-CEEEEEcCCChHHHHHHHHHHHHc-----CCCceEecCCCCCHHHHHHHHHH
Confidence            5688999998766   456666665 3 46765 467777777666655432     2467788877743      2222


Q ss_pred             ---CCCceeEEEEcCC
Q 025534          172 ---RKESYDVIIGDLA  184 (251)
Q Consensus       172 ---~~~~fD~Ii~D~~  184 (251)
                         .-+..|+++.++-
T Consensus        78 ~~~~~g~idilinnag   93 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             HHHHHSCEEEEECCCC
T ss_pred             HHHHcCCCcEEEeccc
Confidence               2357999999875