Citrus Sinensis ID: 025536

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MSSHPQRAGRAEAKARRRKEIKQECRREQRTRTRARTQLPMALILISSSTIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccEEccccccccccccccccEEEcccccEEEEEcccccEEEEEEccccHHHHHHccccccEEEEEEEEcccccccEEEEEEEccccccccccccccccccccEEEccccEEEEEEEEEcccccccEEEEcccEEEEEEEccccccHHHHHHHHHHHHHcccccccEEEEccccccEEEEEEccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccEEEEEcccHHcccccHHHHHccccccccccEEEEccccEEEEEEccccEEEEEcccccEEHHHHHHccccccEEEEEcccccccccEEEEEccHHHHccccccccccccccEEEEccccEEEEEEEEccccccccEccccHHHcEEEEEccccccHHHHHHHHHHHHHHccccccEEEccccccccEEEEEEcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msshpqraGRAEAKARRRKEIKQECRREQRTRTRARTQLPMALILISsstiastvdptssslkmpkrktdkayvLDKTKHLARLNIKEAGKVLLRrgegklekQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALstvaaetnpqdapvppcisqleggLVQVAIEVEDRAQRsaitrvnaddvrVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLqrgwnnkskLLVVEDLSARQVYEKLLEAVQP
Flexible Loop (DISEMBL)
msshpqragraeakarrrkeikqecrreqrtrtrartqlpmalilissstiastvdptssslkmpkrktdkayvldktkhlarlnikeagkvllrrgegklekqfrMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQrsaitrvnaddvrVTVAapaargeanNELLEFMGKVLSLRLSQMTLqrgwnnkskllvVEDLSARQVYEKLLEAVQP
Low Complexity Region (SEG)
MSSHPQragraeakarrrkeIKqecrreqrtrtrartqLPMalilissstiastVDPTSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP
Disordered region (IsUnstruct)
****************************************MALILI*************************AYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAET*****PVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKL******
Disordered Region (DISOPRED)
*****************************************ALILISSSTIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYV********************PCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTL***WNNKSKLLVVEDLSARQVYEKLLEA***
Disordered Region (DISEMBL)
*********************************RARTQLPMALILISSSTI*****************TDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP
Disordered Region (DISPRO)
***********************ECRREQRTRTRARTQLPMALILISSSTIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSHPQRAGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPMALILISSSTIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q505I4	126	UPF0235 protein C15orf40	no	no	0.338	0.674	0.360	1e-08
Q3ZBP8	126	UPF0235 protein C15orf40	yes	no	0.398	0.793	0.333	2e-08
Q8WUR7	126	UPF0235 protein C15orf40	no	no	0.386	0.769	0.323	3e-08
Q9CRC3	126	UPF0235 protein C15orf40	yes	no	0.338	0.674	0.348	3e-08
Q66I61	224	UPF0428 protein CXorf56 h	yes	no	0.286	0.321	0.394	3e-07
Q3A6Y1	95	UPF0235 protein Pcar_0617	yes	no	0.366	0.968	0.301	4e-06
B4THI7	96	UPF0235 protein YggU OS=S	yes	no	0.294	0.770	0.306	5e-06
B5F5M7	96	UPF0235 protein YggU OS=S	yes	no	0.294	0.770	0.306	5e-06
B5BFQ9	96	UPF0235 protein YggU OS=S	yes	no	0.298	0.781	0.302	5e-06
Q5PML0	96	UPF0235 protein YggU OS=S	yes	no	0.298	0.781	0.302	5e-06

>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 161 GLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTL 220
           G V +AI  +  ++++A+T +N + V V +AAP + GEAN EL  ++ KVL LR S + L
Sbjct: 34  GFVTIAIHAKPGSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVL 93

Query: 221 QRGWNNKSKLL-VVEDLSARQVYEKL 245
            +G  ++ K++ ++   +  +V EKL
Sbjct: 94  DKGGKSREKVVKLLASTTPEEVLEKL 119

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 150 PVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGK 209
           P+ P     +GG V +AI  +  ++++A+T V  + V V +AAP   GEAN EL  ++ K
Sbjct: 24  PLGPVTVDPKGG-VSIAIHAKPGSKQNAVTDVTTEAVSVAIAAPPTEGEANAELCRYLSK 82

Query: 210 VLSLRLSQMTLQRGWNNKSKLL-VVEDLSARQVYEKLLEAVQ 250
           VL LR S + L +G  ++ K++ ++      ++ EKL + V+
Sbjct: 83  VLELRKSDVVLDKGGKSREKVVKLLASTPPEEILEKLKKQVE 124

Bos taurus (taxid: 9913)

>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 135 GALSTVAAETNPQDAPVPPC--ISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAA 192
           GA +   +++   + P+PP   ++    G V +AI  +  ++++A+T + A+ V V +AA
Sbjct: 6   GATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVAIAA 65

Query: 193 PAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL 231
           P + GEAN EL  ++ KVL LR S + L +G  ++ K++
Sbjct: 66  PPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVV 104

Homo sapiens (taxid: 9606)

>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 161 GLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTL 220
           G V +AI  +  ++++A+T ++ + V V +AAP + GEAN EL  ++ KVL LR S + L
Sbjct: 34  GFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVL 93

Query: 221 QRGWNNKSKLL-VVEDLSARQVYEKL 245
            +G  ++ K++ ++   +  +V EKL
Sbjct: 94  DKGGKSREKVVKLLASTTPEEVLEKL 119

Mus musculus (taxid: 10090)

>sp|Q66I61|CX056_DANRE UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 63  KMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSE 121
           K+P R  DKA V+D  KH  +  N++E   V L+R EG +E+Q+R  C  CGL + Y+ +
Sbjct: 47  KLPMRPRDKARVIDAAKHAHKFCNVEEDEAVYLKRSEG-IERQYRKKCGKCGLLLFYQHQ 105

Query: 122 ETLEVASFIYVVDGAL 137
             ++     ++VDGAL
Sbjct: 106 --MKSTQTTFIVDGAL 119

Danio rerio (taxid: 7955)

>sp|Q3A6Y1|Y617_PELCD UPF0235 protein Pcar_0617 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_0617 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 154 CISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSL 213
           C+SQ + G+V +++ V+ RA R+ +  +  + +++ + +P   G AN    EF+ K+L +
Sbjct: 4   CLSQTDKGVV-LSVHVQPRASRNELAGLQGESLKIRLTSPPVEGAANKLCREFLAKLLGV 62

Query: 214 RLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLL 246
             S++TL  G  ++ K L++E ++  +V  KLL
Sbjct: 63  AKSRVTLVSGDKSRHKRLLIEGVTLDEVRNKLL 95

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

>sp|B4THI7|YGGU_SALHS UPF0235 protein YggU OS=Salmonella heidelberg (strain SL476) GN=yggU PE=3 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 155 ISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLR 214
           +++ E GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK   + 
Sbjct: 4   VTRCEDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLGKQFRVA 62

Query: 215 LSQMTLQRGWNNKSK 229
            SQ+ +++G   + K
Sbjct: 63  KSQIVIEKGELGRHK 77

Salmonella heidelberg (strain SL476) (taxid: 454169)

>sp|B5F5M7|YGGU_SALA4 UPF0235 protein YggU OS=Salmonella agona (strain SL483) GN=yggU PE=3 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 155 ISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLR 214
           +++ E GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK   + 
Sbjct: 4   VTRCEDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLGKQFRVA 62

Query: 215 LSQMTLQRGWNNKSK 229
            SQ+ +++G   + K
Sbjct: 63  KSQIVIEKGELGRHK 77

Salmonella agona (strain SL483) (taxid: 454166)

>sp|B5BFQ9|YGGU_SALPK UPF0235 protein YggU OS=Salmonella paratyphi A (strain AKU_12601) GN=yggU PE=3 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 154 CISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSL 213
            +++ E GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK   +
Sbjct: 3   AVTRCEDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLGKQFRV 61

Query: 214 RLSQMTLQRGWNNKSK 229
             SQ+ +++G   + K
Sbjct: 62  AKSQIVIEKGELGRHK 77

Salmonella paratyphi A (strain AKU_12601) (taxid: 554290)

>sp|Q5PML0|YGGU_SALPA UPF0235 protein YggU OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yggU PE=3 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 154 CISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSL 213
            +++ E GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK   +
Sbjct: 3   AVTRCEDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLIKFLGKQFRV 61

Query: 214 RLSQMTLQRGWNNKSK 229
             SQ+ +++G   + K
Sbjct: 62  AKSQIVIEKGELGRHK 77

Salmonella paratyphi A (strain ATCC 9150 / SARB42) (taxid: 295319)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
225456297	232	PREDICTED: uncharacterized protein LOC10	0.752	0.814	0.947	1e-101
255540269	232	conserved hypothetical protein [Ricinus	0.832	0.900	0.871	1e-101
115471615	232	Os07g0295200 [Oryza sativa Japonica Grou	0.832	0.900	0.852	2e-99
145334887	213	uncharacterized protein [Arabidopsis tha	0.824	0.971	0.851	9e-98
224119652	231	predicted protein [Populus trichocarpa]	0.828	0.900	0.842	2e-97
223944751	194	unknown [Zea mays] gi|414884282|tpg|DAA6	0.768	0.994	0.886	3e-97
226529615	194	uncharacterized protein LOC100286278 [Ze	0.768	0.994	0.880	5e-97
194688626	232	unknown [Zea mays] gi|414884278|tpg|DAA6	0.832	0.900	0.828	1e-96
224133940	231	predicted protein [Populus trichocarpa]	0.749	0.813	0.915	1e-96
357111014	232	PREDICTED: UPF0235 protein C15orf40 homo	0.832	0.900	0.823	1e-95

>gi|225456297|ref|XP_002283689.1| PREDICTED: uncharacterized protein LOC100247416 [Vitis vinifera] gi|147823132|emb|CAN75279.1| hypothetical protein VITISV_030868 [Vitis vinifera] gi|297734405|emb|CBI15652.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/189 (94%), Positives = 185/189 (97%)

Query: 63  KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEE 122
           K+PKRKTD++YVLDKTKHLARLNI EAGKVLL+RGEGKLEKQFRMNC+GCGLFVCYRSEE
Sbjct: 44  KVPKRKTDRSYVLDKTKHLARLNINEAGKVLLKRGEGKLEKQFRMNCMGCGLFVCYRSEE 103

Query: 123 TLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVN 182
            LE A+FIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVN
Sbjct: 104 DLESATFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVN 163

Query: 183 ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVY 242
           ADDVRVTVAAPAARGEANNELLEFMGKVL LRLSQMTLQRGWNNKSKLLVVEDLSARQVY
Sbjct: 164 ADDVRVTVAAPAARGEANNELLEFMGKVLGLRLSQMTLQRGWNNKSKLLVVEDLSARQVY 223

Query: 243 EKLLEAVQP 251
           EKLLEAVQP
Sbjct: 224 EKLLEAVQP 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540269|ref|XP_002511199.1| conserved hypothetical protein [Ricinus communis] gi|223550314|gb|EEF51801.1| conserved hypothetical protein [Ricinus communis]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/210 (87%), Positives = 191/210 (90%), Gaps = 1/210 (0%)

Query: 43  LILISSSTIASTVDPTSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKL 101
           L +      +S V  T + L KMPKRKTDKAYVLDK KHLARLNI EAGKVLL+RGEGKL
Sbjct: 23  LFVYYCKHCSSHVLITDTQLQKMPKRKTDKAYVLDKRKHLARLNINEAGKVLLKRGEGKL 82

Query: 102 EKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGG 161
           EKQFRMNC+GCGLFVCYR+EE LE  S+IYVVDGALST+AAETNPQDAPVPPCISQLEGG
Sbjct: 83  EKQFRMNCMGCGLFVCYRAEEDLEFTSYIYVVDGALSTIAAETNPQDAPVPPCISQLEGG 142

Query: 162 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221
           LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVL LRLSQMTLQ
Sbjct: 143 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLGLRLSQMTLQ 202

Query: 222 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           RGWNNKSKLLVVEDLSARQVYEKLLEAVQP
Sbjct: 203 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471615|ref|NP_001059406.1| Os07g0295200 [Oryza sativa Japonica Group] gi|34394983|dbj|BAC84531.1| unknown protein [Oryza sativa Japonica Group] gi|113610942|dbj|BAF21320.1| Os07g0295200 [Oryza sativa Japonica Group] gi|215765278|dbj|BAG86975.1| unnamed protein product [Oryza sativa Japonica Group] gi|218199457|gb|EEC81884.1| hypothetical protein OsI_25695 [Oryza sativa Indica Group] gi|222636860|gb|EEE66992.1| hypothetical protein OsJ_23901 [Oryza sativa Japonica Group]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 43  LILISSSTIASTVDPTSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKL 101
           L +      AS V  T + L KMPKRKTD+A+VLDK KHL+RLN+KEAGKVLL+RGEGKL
Sbjct: 23  LFVYYCKHCASHVLITDTQLQKMPKRKTDRAHVLDKKKHLSRLNVKEAGKVLLKRGEGKL 82

Query: 102 EKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGG 161
           EKQFRM+C+GCGLFVCYRSEE LE+A FIYVVDGALS+VAAETNP DAPVPPCI+QLEGG
Sbjct: 83  EKQFRMSCLGCGLFVCYRSEEELELAPFIYVVDGALSSVAAETNPHDAPVPPCITQLEGG 142

Query: 162 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221
           LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVL LRLSQMTLQ
Sbjct: 143 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLGLRLSQMTLQ 202

Query: 222 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           RGWNNKSKLL+VEDLSARQVYEKLLEAVQP
Sbjct: 203 RGWNNKSKLLIVEDLSARQVYEKLLEAVQP 232

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334887|ref|NP_001078789.1| uncharacterized protein [Arabidopsis thaliana] gi|332010366|gb|AED97749.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 178/209 (85%), Positives = 190/209 (90%), Gaps = 2/209 (0%)

Query: 45  LISSSTIASTVDPTSSSL--KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLE 102
           LISS T A+TV   S SL  KMPKRKTD++ VLDK  HLARLN+ E GKVLL+RGEGK+E
Sbjct: 5   LISSYTTANTVVLMSLSLLQKMPKRKTDRSNVLDKKTHLARLNVSEGGKVLLKRGEGKME 64

Query: 103 KQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGL 162
           +QFRMNCIGC LFVCYR+EE LE ASFIY+VDGALS VAAETNPQDAPVPPCISQL+GGL
Sbjct: 65  RQFRMNCIGCELFVCYRAEENLETASFIYIVDGALSAVAAETNPQDAPVPPCISQLDGGL 124

Query: 163 VQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQR 222
           VQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMG+VL LRLSQMTLQR
Sbjct: 125 VQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGRVLGLRLSQMTLQR 184

Query: 223 GWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           GWN+KSKLLVVEDLSARQVYEKLLEAV P
Sbjct: 185 GWNSKSKLLVVEDLSARQVYEKLLEAVVP 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119652|ref|XP_002318126.1| predicted protein [Populus trichocarpa] gi|222858799|gb|EEE96346.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 188/210 (89%), Gaps = 2/210 (0%)

Query: 43  LILISSSTIASTVDPTSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKL 101
           L +       S V  T + L KMPKRKTDKAY LDK KHLARLN+ EAGKV+L+RGEGKL
Sbjct: 23  LFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYALDKKKHLARLNVDEAGKVVLKRGEGKL 82

Query: 102 EKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGG 161
           EKQFRMNC+GCGLFVCYR+EE LE ASFIYV+DGALST+AAETNPQDAPVPPCI+QL GG
Sbjct: 83  EKQFRMNCMGCGLFVCYRAEEDLEFASFIYVIDGALSTIAAETNPQDAPVPPCITQL-GG 141

Query: 162 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221
           LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMG+VL LRLSQMTLQ
Sbjct: 142 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGRVLGLRLSQMTLQ 201

Query: 222 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           RGWNNKSKLLVVEDL ARQVYEKLLEAVQP
Sbjct: 202 RGWNNKSKLLVVEDLYARQVYEKLLEAVQP 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223944751|gb|ACN26459.1| unknown [Zea mays] gi|414884282|tpg|DAA60296.1| TPA: COG1872 containing protein, Uncharacterized ACR, YggU family [Zea mays]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/193 (88%), Positives = 185/193 (95%)

Query: 59  SSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCY 118
           SSS KMPKRKTD+A+VLDK KHL+RLN+KEAGKV+L+RGEGKLEKQFRM+C+GC LFVCY
Sbjct: 2   SSSPKMPKRKTDRAHVLDKAKHLSRLNVKEAGKVMLKRGEGKLEKQFRMSCVGCDLFVCY 61

Query: 119 RSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAI 178
           RSEE LEVA FIYV+DGALS+VAAETNP DAPVPPCI+QLEGGLVQVAIEVEDRAQRSAI
Sbjct: 62  RSEEDLEVAPFIYVIDGALSSVAAETNPHDAPVPPCITQLEGGLVQVAIEVEDRAQRSAI 121

Query: 179 TRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSA 238
           TRVNADDVRVTVAA AARGEAN+ELLEFMGKVL LRL+QMTLQRGWNNKSKLL+VEDLSA
Sbjct: 122 TRVNADDVRVTVAALAARGEANSELLEFMGKVLGLRLTQMTLQRGWNNKSKLLIVEDLSA 181

Query: 239 RQVYEKLLEAVQP 251
           RQVYEKLLEAVQP
Sbjct: 182 RQVYEKLLEAVQP 194

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529615|ref|NP_001152637.1| uncharacterized protein LOC100286278 [Zea mays] gi|195658405|gb|ACG48670.1| uncharacterized ACR, YggU family COG1872 containing protein [Zea mays]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 185/193 (95%)

Query: 59  SSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCY 118
           SSS KMPKRKTD+A+VLDK KHL+RLN+KEAGKV+L+RGEGKLEKQFRM+C+GC LFVCY
Sbjct: 2   SSSPKMPKRKTDRAHVLDKAKHLSRLNVKEAGKVMLKRGEGKLEKQFRMSCVGCDLFVCY 61

Query: 119 RSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAI 178
           RSEE LEVA FIYV+DGALS+VAAETNP DAPVPPCI+QLEGGLVQVAIEVEDRAQRSA+
Sbjct: 62  RSEEDLEVAPFIYVIDGALSSVAAETNPHDAPVPPCITQLEGGLVQVAIEVEDRAQRSAV 121

Query: 179 TRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSA 238
           TRVNADDVRVTVAA AARGEAN+ELLEFMGKVL LRL+QMTLQRGWNNKSKLL+VEDLSA
Sbjct: 122 TRVNADDVRVTVAALAARGEANSELLEFMGKVLGLRLTQMTLQRGWNNKSKLLIVEDLSA 181

Query: 239 RQVYEKLLEAVQP 251
           RQVYEKLLEAVQP
Sbjct: 182 RQVYEKLLEAVQP 194

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194688626|gb|ACF78397.1| unknown [Zea mays] gi|414884278|tpg|DAA60292.1| TPA: hypothetical protein ZEAMMB73_531342 [Zea mays]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/210 (82%), Positives = 190/210 (90%), Gaps = 1/210 (0%)

Query: 43  LILISSSTIASTVDPTSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKL 101
           L +      AS V  T + L KMPKRKTD+A+VLDK KHL+RLN+KEAGKV+L+RGEGKL
Sbjct: 23  LFVYYCKHCASHVLITDTQLQKMPKRKTDRAHVLDKAKHLSRLNVKEAGKVMLKRGEGKL 82

Query: 102 EKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGG 161
           EKQFRM+C+GC LFVCYRSEE LEVA FIYV+DGALS+VAAETNP DAPVPPCI+QLEGG
Sbjct: 83  EKQFRMSCVGCDLFVCYRSEEDLEVAPFIYVIDGALSSVAAETNPHDAPVPPCITQLEGG 142

Query: 162 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221
           LVQVAIEVEDRAQRSAITRVNADDVRVTVAA AARGEAN+ELLEFMGKVL LRL+QMTLQ
Sbjct: 143 LVQVAIEVEDRAQRSAITRVNADDVRVTVAALAARGEANSELLEFMGKVLGLRLTQMTLQ 202

Query: 222 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           RGWNNKSKLL+VEDLSARQVYEKLLEAVQP
Sbjct: 203 RGWNNKSKLLIVEDLSARQVYEKLLEAVQP 232

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133940|ref|XP_002321697.1| predicted protein [Populus trichocarpa] gi|222868693|gb|EEF05824.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/189 (91%), Positives = 181/189 (95%), Gaps = 1/189 (0%)

Query: 63  KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEE 122
           KMPKRKTD+AYVLDK KHLARL++ EAGKVLL+RGEGK EKQFRMNC+GCGLFVCYR+EE
Sbjct: 44  KMPKRKTDRAYVLDKKKHLARLHMNEAGKVLLKRGEGKFEKQFRMNCMGCGLFVCYRAEE 103

Query: 123 TLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVN 182
            LE ASFIYVVDGALSTVAAETNPQDAPVPPCISQL GGLVQVAIEVEDRAQRSAITRVN
Sbjct: 104 DLESASFIYVVDGALSTVAAETNPQDAPVPPCISQL-GGLVQVAIEVEDRAQRSAITRVN 162

Query: 183 ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVY 242
           ADDVRVTVAAPAARGEANNELLEF+GKVL L+LSQMTLQRGWNNKSKLLVVEDLSARQVY
Sbjct: 163 ADDVRVTVAAPAARGEANNELLEFVGKVLGLKLSQMTLQRGWNNKSKLLVVEDLSARQVY 222

Query: 243 EKLLEAVQP 251
           EKLLEA QP
Sbjct: 223 EKLLEAAQP 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111014|ref|XP_003557310.1| PREDICTED: UPF0235 protein C15orf40 homolog [Brachypodium distachyon]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 188/210 (89%), Gaps = 1/210 (0%)

Query: 43  LILISSSTIASTVDPTSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKL 101
           L +      AS V  T + L KMPKRKTD+A VLDK KHL+RLN+K+AGKV+L+RGEGKL
Sbjct: 23  LFVYYCKHCASHVLITDTILQKMPKRKTDRANVLDKKKHLSRLNVKDAGKVMLKRGEGKL 82

Query: 102 EKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGG 161
           EKQFRM+C+GC LFVCYRSEE LE+A FIYVVDGALS+VAAETNP DAPVPPCI+QL+GG
Sbjct: 83  EKQFRMSCVGCDLFVCYRSEEDLELAPFIYVVDGALSSVAAETNPHDAPVPPCITQLQGG 142

Query: 162 LVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221
           LVQVAIEVEDRAQRSAITRVNADDVRV VAAPA RGEANNELLEFMGKVL LRLSQMTLQ
Sbjct: 143 LVQVAIEVEDRAQRSAITRVNADDVRVAVAAPATRGEANNELLEFMGKVLGLRLSQMTLQ 202

Query: 222 RGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
           RGWNNKSKLL+VEDLSARQVYEKLLEAVQP
Sbjct: 203 RGWNNKSKLLIVEDLSARQVYEKLLEAVQP 232

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2167361	232	AT5G63440 "AT5G63440" [Arabido	0.772	0.836	0.866	1.8e-85
TAIR|locus:2028511	126	AT1G49170 "AT1G49170" [Arabido	0.454	0.904	0.315	1.2e-12
MGI|MGI:1914540	126	3110040N11Rik "RIKEN cDNA 3110	0.438	0.873	0.330	9.4e-11
ZFIN|ZDB-GENE-040912-104	224	zgc:103697 "zgc:103697" [Danio	0.286	0.321	0.394	5.6e-08
MGI|MGI:1924894	222	C330007P06Rik "RIKEN cDNA C330	0.286	0.324	0.368	4.6e-06
UNIPROTKB|Q74EU5	107	GSU0864 "UPF0235 protein GSU08	0.390	0.915	0.306	1.1e-05
TIGR_CMR|GSU_0864	107	GSU_0864 "conserved hypothetic	0.390	0.915	0.306	1.1e-05
UNIPROTKB|Q5LUW5	92	SPO0937 "UPF0235 protein SPO09	0.314	0.858	0.287	1.4e-05
TIGR_CMR|SPO_0937	92	SPO_0937 "conserved hypothetic	0.314	0.858	0.287	1.4e-05
UNIPROTKB|Q3Z6Z5	97	DET1292 "UPF0235 protein DET12	0.338	0.876	0.232	0.00033

TAIR|locus:2167361 AT5G63440 "AT5G63440" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 169/195 (86%), Positives = 181/195 (92%)

Query:    58 TSSSL-KMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFV 116
             T + L KMPKRKTD++ VLDK  HLARLN+ E GKVLL+RGEGK+E+QFRMNCIGC LFV
Sbjct:    38 TDTQLQKMPKRKTDRSNVLDKKTHLARLNVSEGGKVLLKRGEGKMERQFRMNCIGCELFV 97

Query:   117 CYRSEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRS 176
             CYR+EE LE ASFIY+VDGALS VAAETNPQDAPVPPCISQL+GGLVQVAIEVEDRAQRS
Sbjct:    98 CYRAEENLETASFIYIVDGALSAVAAETNPQDAPVPPCISQLDGGLVQVAIEVEDRAQRS 157

Query:   177 AITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDL 236
             AITRVNADDVRVTVAAPAARGEANNELLEFMG+VL LRLSQMTLQRGWN+KSKLLVVEDL
Sbjct:   158 AITRVNADDVRVTVAAPAARGEANNELLEFMGRVLGLRLSQMTLQRGWNSKSKLLVVEDL 217

Query:   237 SARQVYEKLLEAVQP 251
             SARQVYEKLLEAV P
Sbjct:   218 SARQVYEKLLEAVVP 232

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2028511 AT1G49170 "AT1G49170" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/114 (31%), Positives = 66/114 (57%)

Query:   138 STVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARG 197
             S   + T  + +  P C+  L    V + I  +  ++ ++IT V+ + V V + APA  G
Sbjct:    12 SAAESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDG 71

Query:   198 EANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP 251
             EAN  LLE+M  VL ++  Q++L  G  ++ K+++VED++ + V++ L +A +P
Sbjct:    72 EANAALLEYMSSVLGVKRRQVSLGSGSKSRDKVVIVEDMTQQSVFQALSQASKP 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914540 3110040N11Rik "RIKEN cDNA 3110040N11 gene" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 38/115 (33%), Positives = 66/115 (57%)

Query:   135 GALSTVAAETN-PQDAPVPPC--ISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVA 191
             GA S    +T  P+ AP P    ++    G V +AI  +  ++++A+T ++ + V V +A
Sbjct:     6 GATSKGKNQTKEPETAP-PAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIA 64

Query:   192 APAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL-VVEDLSARQVYEKL 245
             AP + GEAN EL  ++ KVL LR S + L +G  ++ K++ ++   +  +V EKL
Sbjct:    65 APPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040912-104 zgc:103697 "zgc:103697" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 30/76 (39%), Positives = 46/76 (60%)

Query:    63 KMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSE 121
             K+P R  DKA V+D  KH  +  N++E   V L+R EG +E+Q+R  C  CGL + Y+ +
Sbjct:    47 KLPMRPRDKARVIDAAKHAHKFCNVEEDEAVYLKRSEG-IERQYRKKCGKCGLLLFYQHQ 105

Query:   122 ETLEVASFIYVVDGAL 137
               ++     ++VDGAL
Sbjct:   106 --MKSTQTTFIVDGAL 119

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1924894 C330007P06Rik "RIKEN cDNA C330007P06 gene" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query:    63 KMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSE 121
             K+P R  D++ V+D  KH  +  N ++     LRR EG +E+Q+R  C  CGL + Y+S+
Sbjct:    47 KLPMRPRDRSRVIDAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQ 105

Query:   122 ETLEVASFIYVVDGAL 137
                + A   ++VDGA+
Sbjct:   106 P--KNAPVTFIVDGAV 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74EU5 GSU0864 "UPF0235 protein GSU0864" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 31/101 (30%), Positives = 50/101 (49%)

Query:   148 DAPVP-PCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEF 206
             D P P P I+    G V  ++ V+ RA R+ I  V  + +++ + +P   GEAN   +EF
Sbjct:     5 DPPSPAPRITDSANG-VTFSVHVQPRASRNEICGVQGEAIKLRLTSPPVEGEANRLCVEF 63

Query:   207 MGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLE 247
             + K L +  S + +  G  ++ K + V    A  V   LLE
Sbjct:    64 LAKRLGVPKSCVAIIAGEKSRHKTIRVSGSDAAAVLA-LLE 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0864 GSU_0864 "conserved hypothetical protein TIGR00251" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 105 (42.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 31/101 (30%), Positives = 50/101 (49%)

Query:   148 DAPVP-PCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEF 206
             D P P P I+    G V  ++ V+ RA R+ I  V  + +++ + +P   GEAN   +EF
Sbjct:     5 DPPSPAPRITDSANG-VTFSVHVQPRASRNEICGVQGEAIKLRLTSPPVEGEANRLCVEF 63

Query:   207 MGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLE 247
             + K L +  S + +  G  ++ K + V    A  V   LLE
Sbjct:    64 LAKRLGVPKSCVAIIAGEKSRHKTIRVSGSDAAAVLA-LLE 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LUW5 SPO0937 "UPF0235 protein SPO0937" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query:   153 PCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLS 212
             P +S L     ++A+ V  +A R ++T +  + +R+TV AP   G+AN  + + + + + 
Sbjct:    10 PDLSHLARPGQEIALRVTPKAARDSVT-LAGEGLRITVTAPPEDGKANEAVRKLLARAMG 68

Query:   213 LRLSQMTLQRGWNNKSKLLV 232
             +  S++TL+RG   + K  V
Sbjct:    69 VAPSRLTLRRGQTARDKTFV 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0937 SPO_0937 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 104 (41.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query:   153 PCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLS 212
             P +S L     ++A+ V  +A R ++T +  + +R+TV AP   G+AN  + + + + + 
Sbjct:    10 PDLSHLARPGQEIALRVTPKAARDSVT-LAGEGLRITVTAPPEDGKANEAVRKLLARAMG 68

Query:   213 LRLSQMTLQRGWNNKSKLLV 232
             +  S++TL+RG   + K  V
Sbjct:    69 VAPSRLTLRRGQTARDKTFV 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6Z5 DET1292 "UPF0235 protein DET1292" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 92 (37.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 20/86 (23%), Positives = 49/86 (56%)

Query:   164 QVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRG 223
             +V +++   AQR+ +T      +++ +AA   +G+AN  L++++ ++L    S++ + RG
Sbjct:     9 RVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPKSEIEICRG 68

Query:   224 WNNKSKLLVVEDLSARQVYEKLLEAV 249
              + ++K++    LS    +E  + A+
Sbjct:    69 LSGRNKVVAFYSLSQAD-FEAKISAI 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017929001 SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (232 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam02594	78	pfam02594, DUF167, Uncharacterized ACR, YggU famil	8e-19
COG1872	102	COG1872, COG1872, Uncharacterized conserved protei	2e-05
PRK04021	92	PRK04021, PRK04021, hypothetical protein; Reviewed	3e-05

>gnl|CDD|217130 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872

 Score = 77.6 bits (192), Expect = 8e-19
 Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 160 GGLVQVAIEVEDRAQRSAITRVNAD-DVRVTVAAPAARGEANNELLEFMGKVLSLRLSQM 218
           G  V + + V+  A++++I  V  D +++V + AP   G+AN EL++F+ K L +  S +
Sbjct: 2   GDGVLLRVRVKPNAKKNSIVGVEEDGELKVRITAPPVDGKANAELIKFLAKTLGVPKSDV 61

Query: 219 TLQRGWNNKSKLLVVED 235
            +  G  ++SK+L++E 
Sbjct: 62  EIVSGETSRSKVLLIEG 78

Length = 78

>gnl|CDD|224784 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 163 VQVAIEVEDRAQRSAITRVN--ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTL 220
           V + + V+ +A+R +I  ++     ++V + AP   G+AN EL++F+ K   +  S + +
Sbjct: 13  VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEI 72

Query: 221 QRGWNNKSKLLVVEDLSARQVYEKL 245
             G  ++ K ++++++   Q+ E+L
Sbjct: 73  VSGETSRLKTVLIKNIDPDQLPERL 97

Length = 102

>gnl|CDD|167678 PRK04021, PRK04021, hypothetical protein; Reviewed

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 159 EGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLS 216
           EG ++QV   V+ +A+ + I  V+     ++V + AP  +G+AN EL++F  K+L    +
Sbjct: 7   EGVILQVY--VQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLG---A 61

Query: 217 QMTLQRGWNNKSKLLVVEDLSARQVYEKL 245
           ++ + RG  ++ K L+V+ +S  +V +KL
Sbjct: 62  EVEIIRGETSREKDLLVKGISLEEVKKKL 90

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG4397	213	consensus Uncharacterized conserved protein [Funct	99.96
PRK01310	104	hypothetical protein; Validated	99.94
PRK01530	105	hypothetical protein; Reviewed	99.94
PRK05090	95	hypothetical protein; Validated	99.94
COG1872	102	Uncharacterized conserved protein [Function unknow	99.94
KOG3276	125	consensus Uncharacterized conserved protein, conta	99.93
PRK04021	92	hypothetical protein; Reviewed	99.93
PF02594	77	DUF167: Uncharacterised ACR, YggU family COG1872;	99.93
PRK00647	96	hypothetical protein; Validated	99.92
TIGR00251	87	conserved hypothetical protein TIGR00251.	99.9

>KOG4397 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=5.3e-30  Score=222.77  Aligned_cols=149  Identities=24%  Similarity=0.294  Sum_probs=118.7

Q ss_pred             CCCcccCCCCCCCCeeEecCCcceeeeecccCceEEEEeCCCcccccccccCCCCCceeEEEecCCCccceEEEEEcCcc
Q 025536           58 TSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL  137 (251)
Q Consensus        58 ~~~Le~LP~R~tD~ArVid~~kh~~Kl~~~~~~~v~irR~~G~iEkQyR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL  137 (251)
                      ||+|++||+|++|+|+|||.+.|++|+|..++++|||||++||||+|||++|.+|+|||||||+|+  +.+++||+.+|+
T Consensus        40 DtqLekmPkRe~DrsrVid~~~h~akl~~~eg~~VylKR~e~giErQyR~~C~~C~Lpl~Yr~~~~--~~~~TFI~~~al  117 (213)
T KOG4397|consen   40 DTQLEKMPKRERDRSRVIDAKTHAAKLNVSEGETVYLKRGEGGIERQYRKKCIKCSLPLFYRHEPN--LETVTFIYIVAL  117 (213)
T ss_pred             hhHHHhccCcccccccccchhhhHHHhccCCCCeEEEecCCccHHHHHHHhhhcCCceeEEecCCC--CCceEEEEEchh
Confidence            789999999999999999999999999999999999999998899999999999999999999997  577899999998


Q ss_pred             cccccccCCCCCCCCCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCc
Q 025536          138 STVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQ  217 (251)
Q Consensus       138 ~~~q~~~~g~~~~vPpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~  217 (251)
                      ..-|.    .+.++|+|+.+.+.- +....+|+--++.+                   .|.+|... +|.-++++...++
T Consensus       118 ~~~q~----~~~~~~~~~~Q~~kk-v~~~r~~k~~gk~s-------------------svtvst~d-Eeeeeieare~ad  172 (213)
T KOG4397|consen  118 ALGQE----VGGFSINNEEQRPKK-VIMTRNTKNMGKFS-------------------SVTVSTID-EEEEEIEARETAD  172 (213)
T ss_pred             hhhhh----cCCCCCCChhhccch-heeeeeeecccccc-------------------eeeecchh-HHHHHHHHHHHHH
Confidence            88332    477899999886644 55666655555544                   34455555 6666666666666


Q ss_pred             EEEEeccCCceeEEEE
Q 025536          218 MTLQRGWNNKSKLLVV  233 (251)
Q Consensus       218 VsIv~G~~SR~K~V~I  233 (251)
                      .....|+-+..++.+.
T Consensus       173 sy~~narii~~qL~rk  188 (213)
T KOG4397|consen  173 SYAMNARIIEKQLKRK  188 (213)
T ss_pred             HHHHHhHHHHHHHHHh
Confidence            6666666665555444

>PRK01310 hypothetical protein; Validated

Probab=99.94  E-value=1.2e-26  Score=185.78  Aligned_cols=94  Identities=26%  Similarity=0.354  Sum_probs=88.4

Q ss_pred             ceeecCCCeEEEEEEEecCCcccceeeeeC-----CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCce
Q 025536          154 CISQLEGGLVQVAIEVEDRAQRSAITRVNA-----DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKS  228 (251)
Q Consensus       154 cI~~~~~G~v~L~V~VkP~Akr~~I~~~~~-----d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~  228 (251)
                      +|++.++| +.|.|+|+|+|++++|.++.+     +.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||.
T Consensus         4 ~~~~~~~~-~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR~   82 (104)
T PRK01310          4 PWRYSADG-LRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSRL   82 (104)
T ss_pred             ceEECCCc-EEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCc
Confidence            57888888 999999999999999999863     379999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCHHHHHHHHHhhc
Q 025536          229 KLLVVEDLSARQVYEKLLEAV  249 (251)
Q Consensus       229 K~V~I~gls~e~v~~~L~~~l  249 (251)
                      |+|.|.+ +++++.++|...+
T Consensus        83 K~v~I~~-~~~~l~~~l~~~~  102 (104)
T PRK01310         83 KQLRIDG-DPEDLGEALRALT  102 (104)
T ss_pred             eEEEEeC-CHHHHHHHHHHHh
Confidence            9999999 9999999998765

>PRK01530 hypothetical protein; Reviewed

Probab=99.94  E-value=1.8e-26  Score=185.17  Aligned_cols=90  Identities=14%  Similarity=0.293  Sum_probs=84.6

Q ss_pred             cCCCeEEEEEEEecCCcccceeeee----CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEE
Q 025536          158 LEGGLVQVAIEVEDRAQRSAITRVN----ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVV  233 (251)
Q Consensus       158 ~~~G~v~L~V~VkP~Akr~~I~~~~----~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I  233 (251)
                      ..+| +.|.|+|+|+|++++|.++.    ++.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||+|+|+|
T Consensus        10 ~~~g-v~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR~K~i~I   88 (105)
T PRK01530         10 SSHQ-ALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILI   88 (105)
T ss_pred             CCCc-EEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEE
Confidence            3566 99999999999999999985    468999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHhh
Q 025536          234 EDLSARQVYEKLLEA  248 (251)
Q Consensus       234 ~gls~e~v~~~L~~~  248 (251)
                      +|++++++.++|...
T Consensus        89 ~g~~~~~l~~~l~~~  103 (105)
T PRK01530         89 KNINEDYLNLIINSY  103 (105)
T ss_pred             eCCCHHHHHHHHHhh
Confidence            999999999998753

>PRK05090 hypothetical protein; Validated

Probab=99.94  E-value=1.6e-26  Score=182.50  Aligned_cols=91  Identities=22%  Similarity=0.437  Sum_probs=83.0

Q ss_pred             CCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEE
Q 025536          152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL  231 (251)
Q Consensus       152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V  231 (251)
                      ++|+.++++| +.|+|+|+|+|++++|.+++++.|+|+|+|||+|||||++|++|||+.|+||+|+|+|++|++||+|+|
T Consensus         1 ~~~~~~~~~~-~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr~K~v   79 (95)
T PRK05090          1 MSAVTWDGDG-LVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQV   79 (95)
T ss_pred             CCceEEeCCe-EEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEE
Confidence            4678888888 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCHHHHHHHH
Q 025536          232 VVEDLSARQVYEKL  245 (251)
Q Consensus       232 ~I~gls~e~v~~~L  245 (251)
                      +|++  ++++...|
T Consensus        80 ~I~~--~~~~~~~~   91 (95)
T PRK05090         80 RIIN--PQQIPPEI   91 (95)
T ss_pred             EEcC--cccChHhH
Confidence            9986  33344443

>COG1872 Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=2.3e-26  Score=183.57  Aligned_cols=95  Identities=24%  Similarity=0.494  Sum_probs=88.9

Q ss_pred             CceeecCCCeEEEEEEEecCCcccceeeeeCCe--EEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeE
Q 025536          153 PCISQLEGGLVQVAIEVEDRAQRSAITRVNADD--VRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKL  230 (251)
Q Consensus       153 pcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~--L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~  230 (251)
                      +++...++| +.|.|+|+|+|+++.|.++.+++  |+|+|+|||++||||++|++|||+.|++|+|+|+|++|++||+|+
T Consensus         4 ~~~~~~~~~-~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K~   82 (102)
T COG1872           4 SAVKELDDG-VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLKT   82 (102)
T ss_pred             hhHhhcCCc-eEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCcccceE
Confidence            456677788 99999999999999999998766  999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCHHHHHHHHHhh
Q 025536          231 LVVEDLSARQVYEKLLEA  248 (251)
Q Consensus       231 V~I~gls~e~v~~~L~~~  248 (251)
                      |+|.+++++++...+...
T Consensus        83 v~i~~i~~d~~~~~~~~~  100 (102)
T COG1872          83 VLIKNIDPDQLPERLAAL  100 (102)
T ss_pred             EEecCCCHHHHHHHHHhh
Confidence            999999999999988764

>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]

Probab=99.93  E-value=5.6e-26  Score=184.80  Aligned_cols=117  Identities=49%  Similarity=0.734  Sum_probs=102.7

Q ss_pred             EEEcCcccccccccCC-CCCCCCCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHh
Q 025536          131 YVVDGALSTVAAETNP-QDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGK  209 (251)
Q Consensus       131 yi~~gAL~~~q~~~~g-~~~~vPpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk  209 (251)
                      |+.++++..-..++.. ++.++||||+...+|.|.|.||++|||++++|+++.++.+.|.|.|||.+|+||+||++||++
T Consensus         2 ~pkk~g~s~k~~~t~~~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeLl~ylsk   81 (125)
T KOG3276|consen    2 MPKKKGKSTKGAETSKVDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAELLEYLSK   81 (125)
T ss_pred             ccccccccccccccCCCccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHHHHHHHH
Confidence            4455666665555554 689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccCCcEEEEeccCCceeEEEEccC-CHHHHHHHHHh
Q 025536          210 VLSLRLSQMTLQRGWNNKSKLLVVEDL-SARQVYEKLLE  247 (251)
Q Consensus       210 ~LgVpks~VsIv~G~~SR~K~V~I~gl-s~e~v~~~L~~  247 (251)
                      +||+++|+|++-+||+||+|+|.|+.. +.++..+.|..
T Consensus        82 vLgLRksdv~ldkG~kSrsKvv~i~~~~~~~e~i~~l~a  120 (125)
T KOG3276|consen   82 VLGLRKSDVTLDKGWKSRSKVVVIEDLSATQEYIELLEA  120 (125)
T ss_pred             HhhhhhhheeecccccccceEEEEecCcccHHHHHHHhc
Confidence            999999999999999999999999865 44555555544

>PRK04021 hypothetical protein; Reviewed

Probab=99.93  E-value=1.7e-25  Score=175.74  Aligned_cols=88  Identities=30%  Similarity=0.529  Sum_probs=82.9

Q ss_pred             eeecCCCeEEEEEEEecCCcccceeeeeC--CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEE
Q 025536          155 ISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLV  232 (251)
Q Consensus       155 I~~~~~G~v~L~V~VkP~Akr~~I~~~~~--d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~  232 (251)
                      |++..+| +.|.|+|+|+|++++|.++++  +.|+|+|+|||++||||+||++|||+.||+   +|+|++|++||+|+|+
T Consensus         2 ~~~~~~~-v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~~---~I~I~~G~~sr~K~v~   77 (92)
T PRK04021          2 LKETKEG-VILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGA---EVEIIRGETSREKDLL   77 (92)
T ss_pred             eEEeCCc-EEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCC---CEEEEecCCcCceEEE
Confidence            6777788 999999999999999999864  899999999999999999999999999996   8999999999999999


Q ss_pred             EccCCHHHHHHHHH
Q 025536          233 VEDLSARQVYEKLL  246 (251)
Q Consensus       233 I~gls~e~v~~~L~  246 (251)
                      |+|+|+|++..+|.
T Consensus        78 i~g~~~e~l~~~L~   91 (92)
T PRK04021         78 VKGISLEEVKKKLK   91 (92)
T ss_pred             EecCCHHHHHHHhc
Confidence            99999999999874

>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function

Probab=99.93  E-value=1.5e-25  Score=170.64  Aligned_cols=75  Identities=29%  Similarity=0.543  Sum_probs=65.9

Q ss_pred             CeEEEEEEEecCCcccceeeeeCC-eEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEEcc
Q 025536          161 GLVQVAIEVEDRAQRSAITRVNAD-DVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVED  235 (251)
Q Consensus       161 G~v~L~V~VkP~Akr~~I~~~~~d-~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~g  235 (251)
                      +.+.|.|+|+|+|++++|.+++++ .|+|+|+|||+|||||+||++|||+.|+||+|+|+|++|++||+|+|+|+|
T Consensus         2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr~K~v~i~~   77 (77)
T PF02594_consen    2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSRNKVVRIEN   77 (77)
T ss_dssp             TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCSEEEEEEE-
T ss_pred             CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCCceEEEEeC
Confidence            449999999999999999999996 999999999999999999999999999999999999999999999999975

Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.

>PRK00647 hypothetical protein; Validated

Probab=99.92  E-value=8e-25  Score=173.23  Aligned_cols=85  Identities=21%  Similarity=0.358  Sum_probs=77.4

Q ss_pred             CCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEEccCCHH
Q 025536          160 GGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSAR  239 (251)
Q Consensus       160 ~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~gls~e  239 (251)
                      +|.+.|.|+|+|+|++++|.++.++.|+|+|+|||+|||||+||++|||+.||||+++|+|++|++||+|+|+|.+ +.+
T Consensus         3 ~~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr~K~v~i~~-~~~   81 (96)
T PRK00647          3 EGFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSRKKKVLLPR-SIK   81 (96)
T ss_pred             CCcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEECh-hHH
Confidence            3559999999999999999999999999999999999999999999999999999999999999999999999965 455


Q ss_pred             HHHHHH
Q 025536          240 QVYEKL  245 (251)
Q Consensus       240 ~v~~~L  245 (251)
                      ..+..+
T Consensus        82 ~~l~~~   87 (96)
T PRK00647         82 AILFEQ   87 (96)
T ss_pred             HHHHHh
Confidence            444443

>TIGR00251 conserved hypothetical protein TIGR00251

Probab=99.90  E-value=1.8e-23  Score=162.79  Aligned_cols=77  Identities=25%  Similarity=0.510  Sum_probs=73.1

Q ss_pred             eeecCCCeEEEEEEEecCCcccceeeeeC--CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEE
Q 025536          155 ISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLV  232 (251)
Q Consensus       155 I~~~~~G~v~L~V~VkP~Akr~~I~~~~~--d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~  232 (251)
                      |+++++| +.|.|+|+|+|++++|.++++  +.|+|+|+|||+|||||+||++|||+.|++   +|+|++|++||+|+|+
T Consensus         1 ~~~~~~g-~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i~~G~tsR~K~v~   76 (87)
T TIGR00251         1 VRENDDG-LLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEIVSGELSRQKTIK   76 (87)
T ss_pred             CeEeCCe-EEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEEEecCCCCceEEE
Confidence            3566677 999999999999999999988  899999999999999999999999999999   9999999999999999


Q ss_pred             Ecc
Q 025536          233 VED  235 (251)
Q Consensus       233 I~g  235 (251)
                      |.|
T Consensus        77 I~~   79 (87)
T TIGR00251        77 IIN   79 (87)
T ss_pred             EeC
Confidence            988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
1n91_A	108	Solution Nmr Structure Of Protein Yggu From Escheri		7e-06

>pdb|1N91|A Chain A, Solution Nmr Structure Of Protein Yggu From Escherichia Coli. Northeast Structural Genomics Consortium Target Er14. Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 159 EGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQM 218
           + GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK   +  SQ+
Sbjct: 12  DDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQV 70
Query: 219 TLQRGWNNKSK 229
            +++G   + K
Sbjct: 71  VIEKGELGRHK 81
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	2e-18
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	1e-14

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Length = 108

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 149 APVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMG 208
             V   ++  + GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+G
Sbjct: 2   DGVMSAVTVNDDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 209 KVLSLRLSQMTLQRGWNNKSKLLVVEDLS 237
           K   +  SQ+ +++G   + K + + +  
Sbjct: 61  KQFRVAKSQVVIEKGELGRHKQIKIINPQ 89

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 153 PCISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKV 210
            C+ ++   L+ V IEV   + +  I   N     + V + +P  +G+AN E+++   + 
Sbjct: 5   DCLREVGDDLL-VNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 211 LSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAV 249
                  + +  G  ++ K + ++ +      + + E  
Sbjct: 64  FG---RDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEKF 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	99.94
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	99.93

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A

Probab=99.94  E-value=1.2e-27  Score=191.61  Aligned_cols=93  Identities=23%  Similarity=0.452  Sum_probs=86.4

Q ss_pred             CCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEE
Q 025536          152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL  231 (251)
Q Consensus       152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V  231 (251)
                      .+||++.++| +.|+|+|+|+|++++|.+++++.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||+|+|
T Consensus         5 m~~~~~~~~~-v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v   83 (108)
T 1n91_A            5 MSAVTVNDDG-LVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQI   83 (108)
T ss_dssp             CCSEEECSSE-EEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEE
T ss_pred             cceEEECCCe-EEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEEecCCCCccEE
Confidence            4588887777 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcc--CCHHHHHHHH
Q 025536          232 VVED--LSARQVYEKL  245 (251)
Q Consensus       232 ~I~g--ls~e~v~~~L  245 (251)
                      +|.+  .+++++...|
T Consensus        84 ~I~~~~~~~~~i~~~~   99 (108)
T 1n91_A           84 KIINPQQIPPEVAALI   99 (108)
T ss_dssp             EEESCCCCCHHHHCCC
T ss_pred             EEeCCcCCHHHHHHhh
Confidence            9998  6788776543

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1

Probab=99.93  E-value=6.1e-27  Score=186.27  Aligned_cols=94  Identities=17%  Similarity=0.368  Sum_probs=89.5

Q ss_pred             CCceeecCCCeEEEEEEEecCCcccceeeee--CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCcee
Q 025536          152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVN--ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSK  229 (251)
Q Consensus       152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~--~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K  229 (251)
                      .+||++.++| +.|+|+|+|+|++++|.+++  ++.|+|+|+|||+|||||+||++|||+.||   |+|+|++|++||+|
T Consensus         4 m~~~~~~~~~-~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i~~G~tsR~K   79 (104)
T 1jrm_A            4 MDCLREVGDD-LLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK   79 (104)
T ss_dssp             CCCEEEETTE-EEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred             chhEEECCCc-EEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence            4689888888 99999999999999999966  999999999999999999999999999999   99999999999999


Q ss_pred             EEEEccCCHHHHHHHHHhhc
Q 025536          230 LLVVEDLSARQVYEKLLEAV  249 (251)
Q Consensus       230 ~V~I~gls~e~v~~~L~~~l  249 (251)
                      +|+|.|++++++.++|.+.+
T Consensus        80 ~v~I~~~~~~~l~~~L~~~~   99 (104)
T 1jrm_A           80 TIRIQGMGRDLFLKLVSEKF   99 (104)
T ss_dssp             EEEEESCCHHHHHHHHHHTS
T ss_pred             EEEEcCCCHHHHHHHHHHHh
Confidence            99999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1yh5a1	100	d.206.1.1 (A:1-100) Hypothetical protein YggU {Esc	6e-18
d1jrma_	104	d.206.1.1 (A:) Hypothetical protein MTH637 {Archae	2e-15

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

 Score = 74.4 bits (183), Expect = 6e-18
 Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 151 VPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKV 210
           V   ++  + GLV + + ++ +A R +I  ++ D+V+V + AP   G+AN+ L++F+GK 
Sbjct: 4   VMSAVTVNDDGLV-LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQ 62

Query: 211 LSLRLSQMTLQRGWNNKSKLLVVED 235
             +  SQ+ +++G   + K + + +
Sbjct: 63  FRVAKSQVVIEKGELGRHKQIKIIN 87

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 154 CISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVL 211
           C+ ++   L+ V IEV   + +  I   N     + V + +P  +G+AN E+++   +  
Sbjct: 6   CLREVGDDLL-VNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETF 64

Query: 212 SLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAV 249
                 + +  G  ++ K + ++ +      + + E  
Sbjct: 65  G---RDVEIVSGQKSRQKTIRIQGMGRDLFLKLVSEKF 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1jrma_	104	Hypothetical protein MTH637 {Archaeon Methanobacte	99.93
d1yh5a1	100	Hypothetical protein YggU {Escherichia coli, o157	99.93

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=7.8e-27  Score=183.90  Aligned_cols=94  Identities=17%  Similarity=0.370  Sum_probs=89.4

Q ss_pred             CCceeecCCCeEEEEEEEecCCcccceeeeeC--CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCcee
Q 025536          152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSK  229 (251)
Q Consensus       152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~--d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K  229 (251)
                      ++||+++++| +.|.|+|+|+|++++|.++.+  +.|+|+|+|||+|||||+||++|||+.|+   ++|+|++|++||+|
T Consensus         4 ~~~l~~~~~g-v~i~v~V~P~A~~~~i~g~~~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~K   79 (104)
T d1jrma_           4 MDCLREVGDD-LLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK   79 (104)
T ss_dssp             CCCEEEETTE-EEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred             hHHHhccCCe-EEEEEEEeeCCCcceeeeecCCCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence            5799999888 999999999999999998754  89999999999999999999999999996   99999999999999


Q ss_pred             EEEEccCCHHHHHHHHHhhc
Q 025536          230 LLVVEDLSARQVYEKLLEAV  249 (251)
Q Consensus       230 ~V~I~gls~e~v~~~L~~~l  249 (251)
                      +|+|+|++.+++.++|.+.|
T Consensus        80 ~i~I~g~~~~~~~~~L~~~l   99 (104)
T d1jrma_          80 TIRIQGMGRDLFLKLVSEKF   99 (104)
T ss_dssp             EEEEESCCHHHHHHHHHHTS
T ss_pred             EEEEeCCCHHHHHHHHHHHh
Confidence            99999999999999999875

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

Probab=99.93  E-value=1.9e-26  Score=180.48  Aligned_cols=86  Identities=24%  Similarity=0.488  Sum_probs=82.7

Q ss_pred             CCCCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCcee
Q 025536          150 PVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSK  229 (251)
Q Consensus       150 ~vPpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K  229 (251)
                      .+.++|+.+++| +.|.|+|+|+|++++|.+++++.|+|+|+|||++||||+||++|||+.||||+|+|+|++|++||+|
T Consensus         3 ~~~s~i~~~~~g-v~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~K   81 (100)
T d1yh5a1           3 GVMSAVTVNDDG-LVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHK   81 (100)
T ss_dssp             CCCCSEEECSSE-EEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSEE
T ss_pred             CcccceEEcCCe-EEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCCcccEEEEecCCCCce
Confidence            367889999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccC
Q 025536          230 LLVVEDL  236 (251)
Q Consensus       230 ~V~I~gl  236 (251)
                      +|+|.+.
T Consensus        82 ~i~I~~~   88 (100)
T d1yh5a1          82 QIKIINP   88 (100)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCc
Confidence            9999973