Citrus Sinensis ID: 025555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccEEEEccccccEEcccccccccccEEEEEcccccccEEEEEEEEccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEEccEEEEEEEEccccEEEEEEEEccEEEEEEEEcccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccccHEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEcccccccccccccccccccEEEEccccccccccccccccccEEEEcccccccccEEEEcccccEEEEEEccccccEEEEEEEEHHHHcccccccccHHccccHHHHHHHHccHHccccccHHEEEEEEEEEcccEEEEEEEccccEEEEEEEcccEEEEEEEEccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgttlfssCSFLAQISSVENGISRVKAVAcstgsdsvdgvMKRRSVLVSGASLIssavlgfpadgLAVVKQGLlagrvpglsepdeqgwrtyrrpddksgghgvgwspiipylfsvpqewdevpvsiadlggteidlrfaspkkgrlFVIVAPVlrfaddlgddatiekigppekvinafgpevigenvegkvLSMDVEELcgrkyyryelepphvLITATAAGNRLYLFSvtgngmvfyPTFCNIINAEL
Flexible Loop (DISEMBL)
mgttlfssCSFLAQISSVENGISRVKAVAcstgsdsvdgvMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAgrvpglsepdeqgwrTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLrfaspkkgrLFVIVAPVLRFADDLGDDAtiekigppekvinafgpevigenvegkvlSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL
Low Complexity Region (SEG)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL
Disordered region (IsUnstruct)
****LFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVP*********************GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIIN***
Disordered Region (DISOPRED)
***********************************************VSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDD*****GVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNII****
Disordered Region (DISEMBL)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL
Disordered Region (DISPRO)
********CSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNII****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
O49292	260	PsbP domain-containing pr	yes	no	0.976	0.942	0.684	1e-89
Q9LXX5	262	PsbP domain-containing pr	no	no	0.737	0.706	0.284	2e-12
P82658	229	Thylakoid lumenal 19 kDa	no	no	0.450	0.493	0.294	0.0006

>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 171/250 (68%), Positives = 195/250 (78%), Gaps = 5/250 (2%)

Query: 1   MGTTLFSSC---SFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISS 56
           M T L   C   S   +IS+ +   S +   +     D     V+ RRSV+ SG  + S+
Sbjct: 2   METALLRYCVNFSGHKKISAHQRSNSEIPKTSPGGCEDEWCARVLSRRSVMASGL-VSST 60

Query: 57  AVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSV 116
             L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+KSGGHGVGWSPIIPY FSV
Sbjct: 61  TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSV 120

Query: 117 PQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKV 176
           PQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD  IE IG P KV
Sbjct: 121 PQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKV 180

Query: 177 INAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG 236
           INAFGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG
Sbjct: 181 INAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNG 240

Query: 237 MVFYPTFCNI 246
           + +   + ++
Sbjct: 241 LQWKRHYKDL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 26/211 (12%)

Query: 42  KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGG 101
           +RR +L+  A  I  A+L      ++  ++  +   +P LS  D        +P D    
Sbjct: 41  RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LSPSDPSFVLFKAKPSDTPAL 98

Query: 102 HGVGWSPIIPYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIV 151
                  + PY F +P  W ++   IA+ L G           I+++F + K+G++ V+ 
Sbjct: 99  RAGN---VQPYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVA 153

Query: 152 APVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYE 210
           +P++R  +    +ATIE +G PEKVI + GP V G + +  ++L   +E++  + YY+Y 
Sbjct: 154 SPLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYV 211

Query: 211 LEPP------HVLITATAAGNRLYLFSVTGN 235
           LE P      H L  ATA G+ + LF V+  
Sbjct: 212 LETPFALTGSHNLAKATAKGSTVVLFVVSAT 242

Arabidopsis thaliana (taxid: 3702)

>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 16/129 (12%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
           Y++ VP+ W E  VS  + G    D  F +PKK          L F       A   ++ 
Sbjct: 86  YVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKK----TEKEYLTFL------AGFRQLA 135

Query: 172 PPEKVIN--AFGPEVIGENVEG--KVLSMDVEELCGRKYYRYELE--PPHVLITATAAGN 225
           P + ++N  A     + + + G  KV+S + ++  G+ YY YE++    H LIT T + N
Sbjct: 136 PRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKN 195

Query: 226 RLYLFSVTG 234
           RLY   V  
Sbjct: 196 RLYAHFVNA 204

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255570434	270	Thylakoid lumenal 29.8 kDa protein, chlo	0.980	0.911	0.730	1e-104
224062948	276	predicted protein [Populus trichocarpa]	0.980	0.891	0.703	5e-98
225457797	279	PREDICTED: psbP domain-containing protei	0.980	0.881	0.687	3e-97
297842481	256	thylakoid lumenal 29.8 kDa protein [Arab	0.976	0.957	0.712	2e-91
356515973	271	PREDICTED: psbP domain-containing protei	0.924	0.856	0.665	9e-90
356509330	267	PREDICTED: psbP domain-containing protei	0.896	0.842	0.697	5e-89
217074038	268	unknown [Medicago truncatula]	0.908	0.850	0.688	6e-89
449443776	267	PREDICTED: psbP domain-containing protei	0.980	0.921	0.649	1e-88
255646927	267	unknown [Glycine max]	0.896	0.842	0.697	1e-88
357463687	268	PsbP domain-containing protein [Medicago	0.908	0.850	0.684	3e-88

>gi|255570434|ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/260 (73%), Positives = 213/260 (81%), Gaps = 14/260 (5%)

Query: 1   MGTTLFSSCSF--------------LAQISSVENGISRVKAVACSTGSDSVDGVMKRRSV 46
           MGTT+F+SCSF              L   SS E G+SR++A       +   G++KRRS 
Sbjct: 1   MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQETGVSRIRATIEPREFEKPIGLLKRRSA 60

Query: 47  LVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGW 106
           LVSG SL SS +LGFP DGLA VKQGLLAGR+PGLSEPDEQGWRTYRRPDDKSGGHGVGW
Sbjct: 61  LVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDDKSGGHGVGW 120

Query: 107 SPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDAT 166
           SPIIPY F VPQEW+EVPVSIADLGGTEIDLRF+S K+GRLFVIVAPVLRFADDLGD+AT
Sbjct: 121 SPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLFVIVAPVLRFADDLGDNAT 180

Query: 167 IEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNR 226
           IE+IGPPEKVINAFGPEVIGENVEGKVLSM+V E  GR YY++ELEPPHVLITATAAGNR
Sbjct: 181 IERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQFELEPPHVLITATAAGNR 240

Query: 227 LYLFSVTGNGMVFYPTFCNI 246
           LYLFSVTGNG+ +   + ++
Sbjct: 241 LYLFSVTGNGLQWKRHYKDL 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062948|ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 187/266 (70%), Positives = 212/266 (79%), Gaps = 20/266 (7%)

Query: 1   MGTTLFSSCSFL-----AQI--------SSVENGISRVKAVACSTGSDSVDG-------V 40
           MGTTL +SC         QI         S E+  SR K  A S  +  +DG        
Sbjct: 1   MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQESFPSRAKITAESRKNGFLDGENEKSAGF 60

Query: 41  MKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSG 100
           +KRRSVLVSG SL+S++VLG   +GLAVVKQGLLAGR+PGLSEPD+QGWRTYRRPDDKSG
Sbjct: 61  LKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPDDQGWRTYRRPDDKSG 120

Query: 101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADD 160
           GHGVGWSPIIPYLFSVPQ W+EVPVSIADLGGTEIDLRF S K+GRLFVIVAPVLRFAD 
Sbjct: 121 GHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVLRFADY 180

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITA 220
           LG++ATIE+IGPPEKVINAFGPEVIGENVEGKVLSM+VEE  GR+YY+YELEPPH LITA
Sbjct: 181 LGENATIEQIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRRYYQYELEPPHALITA 240

Query: 221 TAAGNRLYLFSVTGNGMVFYPTFCNI 246
           TAAGNRLYLF+VTGNG+ +   + ++
Sbjct: 241 TAAGNRLYLFNVTGNGLQWKRHYQDL 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457797|ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] gi|302142754|emb|CBI19957.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/269 (68%), Positives = 211/269 (78%), Gaps = 23/269 (8%)

Query: 1   MGTTLFSSCSF-------------LAQISSVENGISRVKAVACSTGSDSVD--------- 38
           MGT++F+SCSF                 SS + G+S  KA   +  +  V+         
Sbjct: 1   MGTSIFTSCSFSWRNHHHIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVEFVDEETEKF 60

Query: 39  -GVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDD 97
            G +KRRS +VSG SLISSAVLGFP +GLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPD+
Sbjct: 61  SGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDE 120

Query: 98  KSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRF 157
           KSGGHGVGWSPIIPY+FSVP  W+EVPVSIADLGGTEIDLRFA+ K+GRLFVIVAPVLRF
Sbjct: 121 KSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLFVIVAPVLRF 180

Query: 158 ADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVL 217
           AD+LGDDA +EKIGPPEKVI AFGPEVIGENVEGKVLSM V E  GR YY++ELEPPHVL
Sbjct: 181 ADNLGDDAKVEKIGPPEKVIAAFGPEVIGENVEGKVLSMGVVEHSGRTYYQFELEPPHVL 240

Query: 218 ITATAAGNRLYLFSVTGNGMVFYPTFCNI 246
           ITATAAGNRLYLFSVT +G+ +   + ++
Sbjct: 241 ITATAAGNRLYLFSVTASGLQWKRHYKDL 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842481|ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297334963|gb|EFH65381.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/247 (71%), Positives = 193/247 (78%), Gaps = 2/247 (0%)

Query: 1   MGTTLFSSCSFLAQISSVENGISRVKAVACSTGSDS-VDGVMKRRSVLVSGASLISSAVL 59
           M T L   C F          IS    V   T  D      + RRSVL SG SL+SS  L
Sbjct: 1   METALLRYC-FNFSSHPYHKKISAHHRVDGETQRDERCATALSRRSVLASGFSLVSSTAL 59

Query: 60  GFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQE 119
            FP DGLAVVKQGLLAGRVPGLSEPD++GWRTYRRPD+KSGGHGVGWSPIIPY FSVPQ+
Sbjct: 60  VFPGDGLAVVKQGLLAGRVPGLSEPDDEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQD 119

Query: 120 WDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINA 179
           W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFAD+LGDD  IE IGPP KVINA
Sbjct: 120 WNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGPPAKVINA 179

Query: 180 FGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVF 239
           FGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLITATAAGNRLYLFSVTGNG+ +
Sbjct: 180 FGPEVIGENVEGKVLSSNVAEHEGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQW 239

Query: 240 YPTFCNI 246
              + ++
Sbjct: 240 KRHYKDL 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515973|ref|XP_003526671.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Glycine max]

 Score =  335 bits (860), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 171/257 (66%), Positives = 199/257 (77%), Gaps = 25/257 (9%)

Query: 1   MGTTLFSSCSFLAQ------------ISSVENGISRVKAVACSTGSD-SVDG-------V 40
           M TT  S+ S L +              +++NG  R    A ++  + S++        +
Sbjct: 1   MATTALSTTSVLCRRKPQHMHIILPSSQTLQNGTLRTDVTASASKDNISIESEKCCSSLL 60

Query: 41  MKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSG 100
           + RR+VL SG SL     LGFP + LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSG
Sbjct: 61  VNRRTVLASGVSL-----LGFPGESLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSG 115

Query: 101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADD 160
           GHGVGWSPIIPY F VP+EW+EVPVSIADLGGTEIDLRFAS K+GRLFVIVAPVLRF+DD
Sbjct: 116 GHGVGWSPIIPYSFRVPKEWEEVPVSIADLGGTEIDLRFASSKEGRLFVIVAPVLRFSDD 175

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITA 220
           LGD+ATIEKIGPPEKVINAFGPE+IGENVEGKVLS +V E  GR YY++ELEPPH+ ITA
Sbjct: 176 LGDNATIEKIGPPEKVINAFGPEMIGENVEGKVLSANVAEHEGRTYYQFELEPPHIFITA 235

Query: 221 TAAGNRLYLFSVTGNGM 237
           TAAGNRLYLF VTG+G+
Sbjct: 236 TAAGNRLYLFGVTGSGL 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509330|ref|XP_003523403.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Glycine max]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 192/235 (81%), Gaps = 10/235 (4%)

Query: 17  SVENGISRVKAVACSTG----SDSVDGVM-KRRSVLVSGASLISSAVLGFPADGLAVVKQ 71
           +++NG  R  A + S      SD    ++  RR++L SG SL+S     FP + LAVVKQ
Sbjct: 28  TLQNGTLRTVAASASKDISIESDKCSSLLVNRRTILASGVSLLS-----FPGESLAVVKQ 82

Query: 72  GLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLG 131
           GLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VP+EW+EVPVSIADLG
Sbjct: 83  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYSFRVPEEWEEVPVSIADLG 142

Query: 132 GTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG 191
           GTEIDLRFAS K+GRLFVIVAPVLRF+DDLGD+ATIEKIGPPEKVINAFGPE+IGENVEG
Sbjct: 143 GTEIDLRFASSKEGRLFVIVAPVLRFSDDLGDNATIEKIGPPEKVINAFGPEMIGENVEG 202

Query: 192 KVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246
           KVLS+   E  GR YY++ELEPPH+ ITATAAGNRLYLF VTG+G+ +   + ++
Sbjct: 203 KVLSVSAAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGSGLQWKRHYNDL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074038|gb|ACJ85379.1| unknown [Medicago truncatula]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 194/241 (80%), Gaps = 13/241 (5%)

Query: 14  QISSVENGISRVKAVACSTGSDSVDG--------VMKRRSVLVSGASLISSAVLGFPADG 65
           Q  SV+N +SR    + S GS S++         +  RR++L SG SL     LGFP   
Sbjct: 23  QPCSVKNEVSRTMHASVSIGSLSINEESDKCSSLLANRRAILASGVSL-----LGFPGVS 77

Query: 66  LAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPV 125
           LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VPQEW+EVPV
Sbjct: 78  LAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPV 137

Query: 126 SIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI 185
           SIADLGGTE+DLRF+S K+GRLFVIVAPVLRF+D +GDDATIEKIGPP+KVI+AFGPE+I
Sbjct: 138 SIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDIIGDDATIEKIGPPDKVISAFGPEMI 197

Query: 186 GENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCN 245
           GENVEGKVLS +V E  GR YY++ELEPPH+ ITATAAGNRLYLF VTGNG+ +   + +
Sbjct: 198 GENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYND 257

Query: 246 I 246
           +
Sbjct: 258 L 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443776|ref|XP_004139653.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Cucumis sativus] gi|449475456|ref|XP_004154459.1| PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Cucumis sativus]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/257 (64%), Positives = 196/257 (76%), Gaps = 11/257 (4%)

Query: 1   MGTTLFSSCSFLA----------QISSVENGISRVKAVACSTGSDSVDGV-MKRRSVLVS 49
           MGTTLF +  F +           +        RV AV  +   + +    + RR  LVS
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 50  GASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPI 109
           G SL+SSA LG   D LA VKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 110 IPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEK 169
           IPY FSVPQ+W+EVPVSIADLGGTEIDLRF S K+GR+FV+VAPV RF+D +G+DATIE 
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 170 IGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYL 229
           +GPPEKVINAFGPEVIGENVEGKV+SM V E  GR YY++ELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 230 FSVTGNGMVFYPTFCNI 246
           F+VT NG+ +   + ++
Sbjct: 241 FNVTANGLQWKRHYNDL 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646927|gb|ACU23933.1| unknown [Glycine max]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 191/235 (81%), Gaps = 10/235 (4%)

Query: 17  SVENGISRVKAVACSTG----SDSVDGVM-KRRSVLVSGASLISSAVLGFPADGLAVVKQ 71
           +++NG  R  A + S      SD    ++  RR++L SG SL+S     FP + LAVVKQ
Sbjct: 28  TLQNGTLRTVAASASKDISIESDKCSSLLVNRRTILASGVSLLS-----FPGESLAVVKQ 82

Query: 72  GLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLG 131
           GLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VP+EW+EVPVSIADLG
Sbjct: 83  GLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYSFRVPEEWEEVPVSIADLG 142

Query: 132 GTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG 191
           GTEIDLRFAS K+GRLFVIVAPVLRF+DDLGD+ATIEKIGPPEKVINAFGPE+IGENVEG
Sbjct: 143 GTEIDLRFASSKEGRLFVIVAPVLRFSDDLGDNATIEKIGPPEKVINAFGPEMIGENVEG 202

Query: 192 KVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI 246
           KVLS+   E  GR YY++ELEPPH+ ITATAAGNRLYLF VTG+G  +   + ++
Sbjct: 203 KVLSVGAAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGSGFQWKRHYNDL 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463687|ref|XP_003602125.1| PsbP domain-containing protein [Medicago truncatula] gi|355491173|gb|AES72376.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/241 (68%), Positives = 193/241 (80%), Gaps = 13/241 (5%)

Query: 14  QISSVENGISRVKAVACSTGSDSVDG--------VMKRRSVLVSGASLISSAVLGFPADG 65
           Q  SV+N +SR    + S  S S++         +  RR++L SG SL     LGFP   
Sbjct: 23  QPCSVKNEVSRTMHASVSIDSLSINEESDKCSSLLANRRAILASGVSL-----LGFPGVS 77

Query: 66  LAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPV 125
           LAVVKQGLLAGR+PGLSEPDEQGWRTYRRPD+KSGGHGVGWSPIIPY F VPQEW+EVPV
Sbjct: 78  LAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPV 137

Query: 126 SIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI 185
           SIADLGGTE+DLRF+S K+GRLFVIVAPVLRF+D +GDDATIEKIGPP+KVI+AFGPE+I
Sbjct: 138 SIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDIIGDDATIEKIGPPDKVISAFGPEMI 197

Query: 186 GENVEGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCN 245
           GENVEGKVLS +V E  GR YY++ELEPPH+ ITATAAGNRLYLF VTGNG+ +   + +
Sbjct: 198 GENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYND 257

Query: 246 I 246
           +
Sbjct: 258 L 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2025292	260	AT1G77090 [Arabidopsis thalian	0.780	0.753	0.824	4.4e-84
TAIR|locus:2102544	262	PPD6 "PsbP-domain protein 6" [	0.733	0.702	0.278	3e-14

TAIR|locus:2025292 AT1G77090 [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 164/199 (82%), Positives = 178/199 (89%)

Query:    40 VMKRRSVLVSGASLISSAV-LGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDK 98
             V+ RRSV+ SG  L+SS   L FP +GLAVVKQGLLAGRVPGLSEPDE+GWRTYRRPD+K
Sbjct:    45 VLSRRSVMASG--LVSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEK 102

Query:    99 SGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFA 158
             SGGHGVGWSPIIPY FSVPQ+W+EVPVSIADLGGTEIDLRFASPK+GRL VIVAPVLRFA
Sbjct:   103 SGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFA 162

Query:   159 DDLGDDATIEKIGPPEKVINAFGPEVIGENVEGKVLSMDVEELCGRKYYRYELEPPHVLI 218
             D+LGDD  IE IG P KVINAFGPEVIGENVEGKVLS +V E  GR YY++ELEPPHVLI
Sbjct:   163 DNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLI 222

Query:   219 TATAAGNRLYLFSVTGNGM 237
             TATAAGNRLYLFSVTGNG+
Sbjct:   223 TATAAGNRLYLFSVTGNGL 241

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2102544 PPD6 "PsbP-domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 58/208 (27%), Positives = 106/208 (50%)

Query:    42 KRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYR-RPDDKSG 100
             +RR +L+  A  I  A+L      ++  ++  +   +P LS P +  +  ++ +P D   
Sbjct:    41 RRRELLLKSAVAIP-AILQLKEAPISAAREVEVGSYLP-LS-PSDPSFVLFKAKPSDTPA 97

Query:   101 GHGVGWSPIIPYLFSVPQEWDEVPVSIADLGG------TE--IDLRFASPKKGRLFVIVA 152
                     + PY F +P  W ++ ++    G        E  I+++F + K+G++ V+ +
Sbjct:    98 LRA---GNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVAS 154

Query:   153 PVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEG-KVLSMDVEELCGRKYYRYEL 211
             P++R  +    +ATIE +G PEKVI + GP V G + +  ++L   +E++  + YY+Y L
Sbjct:   155 PLIRLTNK--PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVL 212

Query:   212 EPP------HVLITATAAGNRLYLFSVT 233
             E P      H L  ATA G+ + LF V+
Sbjct:   213 ETPFALTGSHNLAKATAKGSTVVLFVVS 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       251   0.00081  114 3  11 22  0.47    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.85u 0.20s 22.05t   Elapsed:  00:00:01
  Total cpu time:  21.85u 0.20s 22.05t   Elapsed:  00:00:01
  Start:  Fri May 10 14:45:51 2013   End:  Fri May 10 14:45:52 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49292	PPD4_ARATH	No assigned EC number	0.684	0.9760	0.9423	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014308001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036935001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (188 aa)				•			•		0.497
	GSVIVG00032533001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (266 aa)				•			•		0.494
	GSVIVG00018736001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (338 aa)				•			•		0.454
	GSVIVG00036435001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (557 aa)				•			•		0.434
	GSVIVG00001491001	SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_117, whole genome shot [...] (119 aa)				•			•		0.432
	GSVIVG00002933001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (184 aa)				•			•		0.427
	GSVIVG00014078001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (220 aa)				•			•		0.428
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.423
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.420
	GSVIVG00019374001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (522 aa)				•			•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	1e-127
PLN00067	263	PLN00067, PLN00067, PsbP domain-containing protein	2e-17

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score =  361 bits (929), Expect = e-127
 Identities = 153/215 (71%), Positives = 174/215 (80%), Gaps = 3/215 (1%)

Query: 23  SRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLS 82
           +          ++ V   + RRS L SGA+  SSAVL FP +GLAV KQGLLAGRVPGLS
Sbjct: 27  TNRAVRIADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAV-KQGLLAGRVPGLS 85

Query: 83  EPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP 142
           EPDE GWRTYRRP+ KSGGHGVGWS I PY F VPQ W+EVPVSIADLGGTEIDLRFAS 
Sbjct: 86  EPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASD 145

Query: 143 KKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV-EGKVLSMDVEEL 201
           K+GRL V+VAPVLRFAD+LGD+ATIE+IGPPEKVI+ FGPE+IGE V EGKVLSM+V E 
Sbjct: 146 KEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEH 205

Query: 202 CGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNG 236
            GR YY++EL PPH L+TATAAGNR+Y+FSVT NG
Sbjct: 206 SGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANG 239

Length = 262

>gnl|CDD|177697 PLN00067, PLN00067, PsbP domain-containing protein 6; Provisional

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 21/142 (14%)

Query: 111 PYLFSVPQEWDEVPVSIAD-LGGTE---------IDLRFASPKKGRLFVIVAPVLRFADD 160
           PY F +P  W      +A+ L G           ++++F   K+G++ V+ +P++R  + 
Sbjct: 106 PYQFILPPTWK--QTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK 163

Query: 161 LGDDATIEKIGPPEKVINAFGPEVIGENVE-GKVLSMDVEELCGRKYYRYELEPP----- 214
              +ATIE+IG PEK+I + GP V G + +  ++L   VE++  + YY+Y LE P     
Sbjct: 164 --PNATIEEIGSPEKLIASLGPFVTGNSYDPDELLETSVEKIGDQTYYKYVLETPFALTG 221

Query: 215 -HVLITATAAGNRLYLFSVTGN 235
            H L  ATA GN + LF V+ +
Sbjct: 222 SHNLAKATAKGNTVVLFVVSAS 243

Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.97
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.05
PF10518	26	TAT_signal: TAT (twin-arginine translocation) path	85.09

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=3.7e-68  Score=481.08  Aligned_cols=238  Identities=66%  Similarity=1.073  Sum_probs=213.9

Q ss_pred             cccccccccccccceeeee---ecCCCCCccccchhhHHHHHHHHHhhhhccCCCCcchhHHHhhhccCCCCCCCCCCCC
Q 025555           11 FLAQISSVENGISRVKAVA---CSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQ   87 (251)
Q Consensus        11 ~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~RR~~L~~~~~~aa~~~~~~p~~~~~~a~~g~~a~~vpg~s~~~~~   87 (251)
                      |....+.......+++...   |..+.+++...++||.+|+++++++..+++++|+++.|+ +||++||||||+|+||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~-~~g~~ag~~~~~s~~~~~   90 (262)
T PLN00066         12 LAPSRSSRVHSRPACTNRAVRIADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAV-KQGLLAGRVPGLSEPDEN   90 (262)
T ss_pred             hccccccccccccccccchhhhcchhhhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhh-hhcccccCCCCCCCcccc
Confidence            3333333333333443333   444556667899999999998888777788999988774 899999999999999999


Q ss_pred             CceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCCCCCcEEEEEEeeccccccCCCCCCc
Q 025555           88 GWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATI  167 (251)
Q Consensus        88 gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI  167 (251)
                      ||++|++|+.+||||||||++|++|+|+||+||+|++|+++|++|+++|+||.|+.++||+|+|+|+.||+++++++++|
T Consensus        91 g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI  170 (262)
T PLN00066         91 GWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATI  170 (262)
T ss_pred             ceEEEecCccccCcCCCCccccCCeEEECCCCCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876789999


Q ss_pred             cccCCHHHHHHhhCccccCccc-ccceeeeeeEEeCCeeeEEEEEcCCceEEEEEEeCCeEEEEEeecCCccccchhhhh
Q 025555          168 EKIGPPEKVINAFGPEVIGENV-EGKVLSMDVEELCGRKYYRYELEPPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNI  246 (251)
Q Consensus       168 ~dLGspeev~~~l~~~l~g~~~-e~~ll~a~~~e~~G~tYY~yEl~~pH~L~saTV~~GkLYtl~v~a~e~rW~k~~~~L  246 (251)
                      +|||+||+|++.|+++++|.+. +++|+++++++++||+||+||| .+|+|++|||++||||||++++||+||+|++++|
T Consensus       171 ~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~~re~dGktYY~~E~-~rH~LasaTV~~GrLYt~~asape~rW~k~~~~l  249 (262)
T PLN00066        171 EEIGPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFEL-PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL  249 (262)
T ss_pred             HHcCCHHHHHHHHHHHhcCCCccccceeEeeeeecCCcEEEEEEE-eCceEEEEEEECCEEEEEEeecchHhhHHHHHHH
Confidence            9999999999999999999998 7899999999999999999999 6899999999999999999999999999999999


Q ss_pred             cccc
Q 025555          247 INAE  250 (251)
Q Consensus       247 r~a~  250 (251)
                      ++.+
T Consensus       250 r~v~  253 (262)
T PLN00066        250 KRIA  253 (262)
T ss_pred             HHHh
Confidence            9763

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=5.3e-49  Score=354.44  Aligned_cols=197  Identities=29%  Similarity=0.530  Sum_probs=171.3

Q ss_pred             ccchhhHHHHHHHHHhhhhccCCCCcchhHHHhhhccCCCCCCCCCCCCCceEEe-----cCCCCCCCCCCCCccccceE
Q 025555           39 GVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYR-----RPDDKSGGHGVGWSPIIPYL  113 (251)
Q Consensus        39 ~~~~RR~~L~~~~~~aa~~~~~~p~~~~~~a~~g~~a~~vpg~s~~~~~gf~~y~-----~p~~~~Gg~g~~~~~i~~Y~  113 (251)
                      ....||++|.|++.....+.+..|...++.+..|.+.+..|     +++||..|+     +|+.++|       +|+||+
T Consensus        41 ~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~-----~~~~~~~f~~~~~~tpalra~-------~i~gY~  108 (263)
T PLN00067         41 VVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSP-----SDPSFVLFKASPKDTPALRAG-------NVQPYQ  108 (263)
T ss_pred             chhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCC-----CCCceEEEecCCCCCcccccC-------Ccccce
Confidence            35679999988776544444455555566778888875444     568999996     7789999       899999


Q ss_pred             EecCCCCcccccccccCCC---------CceeEEEeCCCCCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccc
Q 025555          114 FSVPQEWDEVPVSIADLGG---------TEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEV  184 (251)
Q Consensus       114 F~~P~gW~ev~Vs~~d~~g---------~g~D~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l  184 (251)
                      |+||+||+|++|+++ .+|         +|+|++|+|+.++||+|||+|+.|+++  +++++|+|||+||+|+++|++++
T Consensus       109 FlyP~gW~~v~Vs~~-~sGnycqp~c~~p~~dv~F~D~~dgnVSVIVSPV~r~t~--k~~~sIeDlGsPeeVl~~Lg~~v  185 (263)
T PLN00067        109 FILPPTWKQTRVANI-LSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTN--KPNATIEEIGSPEKLIASLGPFV  185 (263)
T ss_pred             EeCCCCCcCcccccc-ccCccccccccCCCceEEEeCCCCCCEEEEEeccccccc--CCCCChHHccCHHHHHHHhhHHh
Confidence            999999999999876 444         479999999999999999999999886  47899999999999999999999


Q ss_pred             cCccc-ccceeeeeeEEeCCeeeEEEEEcCC------ceEEEEEEeCCeEEEEEeecCCccccchhhhhcccc
Q 025555          185 IGENV-EGKVLSMDVEELCGRKYYRYELEPP------HVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAE  250 (251)
Q Consensus       185 ~g~~~-e~~ll~a~~~e~~G~tYY~yEl~~p------H~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~a~  250 (251)
                      +|.+. +++|++++++++|||+||+|||.+|      |+|++|||++||||||++++||+||+|+++.|++.+
T Consensus       186 ~g~~~~~~eLLeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~  258 (263)
T PLN00067        186 TGNSYDPDELLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAIL  258 (263)
T ss_pred             hcCCCCCcceEEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence            99887 6799999999999999999999865      999999999999999999999999999999999763

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=7e-45  Score=328.13  Aligned_cols=195  Identities=25%  Similarity=0.401  Sum_probs=162.3

Q ss_pred             ccccceeeeeecCCCCCccccchhhHHHHHHHHHhhhhccCCCCcchhHHHhhhccCCCCCCCCCCCCCceEEecCCCCC
Q 025555           20 NGISRVKAVACSTGSDSVDGVMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLSEPDEQGWRTYRRPDDKS   99 (251)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~RR~~L~~~~~~aa~~~~~~p~~~~~~a~~g~~a~~vpg~s~~~~~gf~~y~~p~~~~   99 (251)
                      ....+++++.|++|.++. ..++||.+|++++++++.+..+.|++    +++|+.| +|+|. +.++.||..|.+     
T Consensus        30 ~~~~~~~~~~~~~~~~~~-~~~srr~~l~~~~ga~a~~~~~~pa~----aay~~~a-nvfg~-~k~~~gF~~y~~-----   97 (260)
T PLN00042         30 VSASRPSQVVCRAQEEDN-SAVSRRAALALLAGAAAAGAKVSPAN----AAYGESA-NVFGK-PKTNTGFLPYNG-----   97 (260)
T ss_pred             cCCCCCcceeeecccccc-ccccHHHHHHHHHHHHHhhcccCchh----hhhcchh-hccCC-CCCCCCCeEeeC-----
Confidence            344578889999987644 45799999999988878778888887    7899999 99996 556899999973     


Q ss_pred             CCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeC--CCCCcEEEEEEeeccccccCCCCCCccccCCHHHHH
Q 025555          100 GGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFAS--PKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVI  177 (251)
Q Consensus       100 Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d--~~~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~  177 (251)
                      +          +|+|+||++|+++++  .++  +|+|++|+|  +.++||+|+|+|+        ++++|+|||+|||++
T Consensus        98 d----------gY~FlyP~~W~~~ke--~~~--~G~dv~f~D~~~~~eNVSV~Ispt--------~k~sI~dlGsPee~l  155 (260)
T PLN00042         98 D----------GFKLLVPSKWNPSKE--REF--PGQVLRFEDNFDATSNLSVMVTPT--------DKKSITDYGSPEEFL  155 (260)
T ss_pred             C----------CeEEecCCCCccccc--ccc--CCceEEeeccccccccEEEEEecC--------CcCCHhhcCCHHHHH
Confidence            1          499999999999888  344  466999999  6789999999999        458999999999977


Q ss_pred             HhhCccccCcc----------------c-ccceeeeeeEEeCCeeeEEEEEcC---------CceEEEEEEeCCeEEEEE
Q 025555          178 NAFGPEVIGEN----------------V-EGKVLSMDVEELCGRKYYRYELEP---------PHVLITATAAGNRLYLFS  231 (251)
Q Consensus       178 ~~l~~~l~g~~----------------~-e~~ll~a~~~e~~G~tYY~yEl~~---------pH~L~saTV~~GkLYtl~  231 (251)
                      +.++. ++|++                + +++|+++++++++|++||+|||.+         +|+||+|||++||||||+
T Consensus       156 ~~vgy-lL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~  234 (260)
T PLN00042        156 SKVSY-LLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICK  234 (260)
T ss_pred             HHHHH-HHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEE
Confidence            77643 33321                1 358999999999999999999952         399999999999999999


Q ss_pred             eecCCccccch-hhhhccc
Q 025555          232 VTGNGMVFYPT-FCNIINA  249 (251)
Q Consensus       232 v~a~e~rW~k~-~~~Lr~a  249 (251)
                      +++||+||+|+ ++.|+.+
T Consensus       235 aqa~EkRW~K~~~k~l~~v  253 (260)
T PLN00042        235 AQAGDKRWFKGARKFVEGA  253 (260)
T ss_pred             ecCchhhhhHHHHHHHHHH
Confidence            99999999998 5567765

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.2e-34  Score=262.00  Aligned_cols=138  Identities=23%  Similarity=0.315  Sum_probs=120.6

Q ss_pred             CCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeC--CCCCcEEEEEEeeccccccCCCC
Q 025555           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFAS--PKKGRLFVIVAPVLRFADDLGDD  164 (251)
Q Consensus        87 ~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d--~~~~~vsVvv~p~~rl~~~~~~~  164 (251)
                      +||+.|.++.+             +|+|+||.||.++..+       |.|+.|+|  +.+|||+|+|+|+..     .+.
T Consensus       107 ~~l~~y~D~~D-------------GY~FlYP~GWi~V~~~-------G~DVvFrD~Ie~~ENVSV~ISs~ss-----s~~  161 (286)
T PLN00059        107 PVFREYIDTFD-------------GYSFKYPQNWIQVRGA-------GADIFFRDPVVLDENLSVEFSSPSS-----SKY  161 (286)
T ss_pred             cccceeEcCCC-------------CeEEeCCCCCeEeccC-------CCceEEeccCccccceEEEEecCCc-----ccC
Confidence            58999997643             4999999999999953       56999999  788999999998831     146


Q ss_pred             CCccccCCHHHHHHhhCccccCcc--------cccceeeeeeEEe-CCeeeEEEEEc-----------------------
Q 025555          165 ATIEKIGPPEKVINAFGPEVIGEN--------VEGKVLSMDVEEL-CGRKYYRYELE-----------------------  212 (251)
Q Consensus       165 ~sI~dLGspeev~~~l~~~l~g~~--------~e~~ll~a~~~e~-~G~tYY~yEl~-----------------------  212 (251)
                      ++|+|||+|++|+++|+..+++++        .+++|+++++|+. ||++||+|||.                       
T Consensus       162 ~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w  241 (286)
T PLN00059        162 TSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEW  241 (286)
T ss_pred             CChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCccccccccccccccccccc
Confidence            999999999999999998888763        3689999998865 99999999995                       


Q ss_pred             CCceEEEEEEeCCeEEEEEeecCCccccchhhhhccc
Q 025555          213 PPHVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINA  249 (251)
Q Consensus       213 ~pH~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~a  249 (251)
                      .+|+|++++|.+||||+|.+++||+||.|++++|+.-
T Consensus       242 ~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V  278 (286)
T PLN00059        242 NRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRV  278 (286)
T ss_pred             ceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHH
Confidence            2399999999999999999999999999999999864

>PLN03152 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=247.26  Aligned_cols=190  Identities=21%  Similarity=0.314  Sum_probs=144.3

Q ss_pred             cchhhHHHHHHHHHhhhhccCCCCcchhHHHhhhccCCCCCCC-CCCCCCceEEecCCCCCCCCCCCCccccceEEecCC
Q 025555           40 VMKRRSVLVSGASLISSAVLGFPADGLAVVKQGLLAGRVPGLS-EPDEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQ  118 (251)
Q Consensus        40 ~~~RR~~L~~~~~~aa~~~~~~p~~~~~~a~~g~~a~~vpg~s-~~~~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~  118 (251)
                      ..+||.++.-.+.+++.+..+-+.-+.+.+..  .-..-|.++ -.+.+.|..|++.               +|++.||+
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~nt~~w~~~~g~---------------gf~~~~pp   92 (241)
T PLN03152         30 GASRRDFILHTASLCASSLAAQNPLPPSLADP--SKPSKPLLSGIANTKSWFQFYGD---------------GFSIRVPP   92 (241)
T ss_pred             cccccceeeehhHHHHhhhhcCCCCCccccCC--CCCCCchheeeecchhhhhhhCC---------------ceEEeCCC
Confidence            45799998877766655333221111111111  111223343 2556778888743               59999999


Q ss_pred             CCcccccccccC-CC----------CceeEEEeC-CCCCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccC
Q 025555          119 EWDEVPVSIADL-GG----------TEIDLRFAS-PKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIG  186 (251)
Q Consensus       119 gW~ev~Vs~~d~-~g----------~g~D~rF~d-~~~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g  186 (251)
                      .|+++.+.. |+ .|          ..+.+||.+ +.+|+|||+|+|+.+|+++|.++++|+|||+|+||++.|+|.  |
T Consensus        93 ~f~di~e~~-~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP~--g  169 (241)
T PLN03152         93 SFEDIMEPE-DYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVPG--G  169 (241)
T ss_pred             ChhhhcChh-hcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCCC--c
Confidence            999998852 33 12          467899999 668999999999999999988999999999999999999875  4


Q ss_pred             ccc-ccceeeeeeEEeCCeeeEEEEEcCC--ceEEEEEEeCCeEEEEEeecCCccccchhhhhcccc
Q 025555          187 ENV-EGKVLSMDVEELCGRKYYRYELEPP--HVLITATAAGNRLYLFSVTGNGMVFYPTFCNIINAE  250 (251)
Q Consensus       187 ~~~-e~~ll~a~~~e~~G~tYY~yEl~~p--H~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~a~  250 (251)
                      ..+ .+++++.+ +|.+||+||+|||...  |+|++|||++||||||.++++|+||+|++++|++|+
T Consensus       170 ~~~~saR~iel~-~E~dGKtYY~lEy~v~~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~kfr~aa  235 (241)
T PLN03152        170 ATLYSARTIKVK-EEEGIRTYYFYEFGRDEQHVALVATVNSGKAYIAGATAPESKWDDDGVKLRSAA  235 (241)
T ss_pred             ccccccceeeee-eecCCceeEEEEEEeCCcEEEEEEEEcCCeEEEEecCCchhchHHHHHHHHHHH
Confidence            333 45666664 4999999999999754  999999999999999999999999999999999984

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.97  E-value=5e-32  Score=231.03  Aligned_cols=138  Identities=28%  Similarity=0.483  Sum_probs=119.2

Q ss_pred             CCCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCCC
Q 025555           86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLGD  163 (251)
Q Consensus        86 ~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~~  163 (251)
                      ..||++|.++..             +|+|+||.||+++.+.       |.|++|+|+  .++||+|+|.|+.       .
T Consensus        20 ~~~~~~y~d~~~-------------~y~f~~P~gW~~~~~~-------G~~v~f~d~~~~~~nvsV~v~p~~-------~   72 (175)
T PF01789_consen   20 STGFQPYTDSDD-------------GYSFLYPSGWEEVDVS-------GADVVFRDPIDADENVSVVVSPVP-------K   72 (175)
T ss_dssp             -SSEEEEEECTT-------------TEEEEEETTEEEEEST-------TEEEEEEETTETTSEEEEEEEE-S-------T
T ss_pred             CCCceEEEcCCC-------------CEEEECCCCCeecCCC-------CeEEEEECcccccceEEEEEEecC-------C
Confidence            489999997643             5999999999888873       569999995  5789999999994       3


Q ss_pred             CCCccccCCHHHHHHhhCccccCccc---ccceeeeeeEEeCCeeeEEEEEcC-------CceEEEEEEeCCeEEEEEee
Q 025555          164 DATIEKIGPPEKVINAFGPEVIGENV---EGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVT  233 (251)
Q Consensus       164 ~~sI~dLGspeev~~~l~~~l~g~~~---e~~ll~a~~~e~~G~tYY~yEl~~-------pH~L~saTV~~GkLYtl~v~  233 (251)
                      +++|+|||+|++|++.|++.+++.+.   +++++++++++.+|++||+|||..       +|+|+++||.+||||+|+++
T Consensus        73 ~~sl~~lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~  152 (175)
T PF01789_consen   73 DFSLEDLGSPEEVAERLLNGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQ  152 (175)
T ss_dssp             S-SGGGG-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cCchhhcCCHHHHHHHHhhhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEE
Confidence            34999999999999999998887765   579999999999999999999962       29999999999999999999


Q ss_pred             cCCccccchhhhhcccc
Q 025555          234 GNGMVFYPTFCNIINAE  250 (251)
Q Consensus       234 a~e~rW~k~~~~Lr~a~  250 (251)
                      ++|+||.|++++|++++
T Consensus       153 a~e~~w~k~~~~l~~iv  169 (175)
T PF01789_consen  153 APESRWDKVEPKLRKIV  169 (175)
T ss_dssp             EEHHHHHTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999999864

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.05  E-value=0.0073  Score=48.76  Aligned_cols=114  Identities=15%  Similarity=0.199  Sum_probs=71.1

Q ss_pred             EEecCCCCcccccccccCCCCceeEEEeCCCCCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccCcccc-c
Q 025555          113 LFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVE-G  191 (251)
Q Consensus       113 ~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g~~~e-~  191 (251)
                      +|.+|.+|++..+.         .+++.|+.....+++|+--.     +.++.+++++  .+.-++.+     -..+. =
T Consensus         3 ~~~lP~~~~D~t~n---------v~~~~~~~~~~~slvIsR~~-----l~~g~tl~~~--~~~q~~~l-----~~~l~~~   61 (130)
T PF08786_consen    3 SLTLPDGWQDRTMN---------VLVLPDSGGSGPSLVISRDP-----LPDGETLEDY--LQRQLAQL-----RKQLPGF   61 (130)
T ss_dssp             EEEEETTSEE--BE---------EEEE--BTTB-EEEEEEEE--------TTS-HHHH--HHHHHHHH-----HCCSTT-
T ss_pred             eEeCCCcceeceEE---------EEEccCCCCCcceEEEEecc-----CCCCCCHHHH--HHHHHHHH-----HhhCCCc
Confidence            68899999999985         47888876656677764321     1234444443  33333333     22332 2


Q ss_pred             ceeeeeeEEeCCeeeEEEEEc--C---C-ceEEEEEEeC-CeEEEEEeecCCccccchhhhhc
Q 025555          192 KVLSMDVEELCGRKYYRYELE--P---P-HVLITATAAG-NRLYLFSVTGNGMVFYPTFCNII  247 (251)
Q Consensus       192 ~ll~a~~~e~~G~tYY~yEl~--~---p-H~L~saTV~~-GkLYtl~v~a~e~rW~k~~~~Lr  247 (251)
                      ++++.+..+.+|++-+.+|+.  .   + |+...+...+ +++|+|+.+++.......+..+.
T Consensus        62 ~~~~~~~~~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~  124 (130)
T PF08786_consen   62 QLVERQPITLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWE  124 (130)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHH
T ss_pred             EEEeeEEEEeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            666777778888888777764  1   2 8888888888 99999999999887766665543

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []

Probab=85.09  E-value=0.82  Score=28.00  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=13.5

Q ss_pred             chhhHHHHHHHHHhhhhcc
Q 025555           41 MKRRSVLVSGASLISSAVL   59 (251)
Q Consensus        41 ~~RR~~L~~~~~~aa~~~~   59 (251)
                      ++||++|.+.+++++.+.+
T Consensus         2 ~sRR~fLk~~~a~~a~~~~   20 (26)
T PF10518_consen    2 LSRRQFLKGGAAAAAAAAL   20 (26)
T ss_pred             CcHHHHHHHHHHHHHHHHh
Confidence            6899999987765554333

Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-17
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	7e-15
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	7e-15
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	1e-14

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 88  GWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRL 147
           G + Y    D              Y F  P+ W +V V        ++           +
Sbjct: 7   GLQAYVDSYDG-------------YEFLYPRGWVQVQVE----DPVDVVFHDIIETTENV 49

Query: 148 FVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENVEGK---VLSMDVEELCGR 204
            V+V  V           ++E++G PE+V +     +I  +  G+   +++   ++   +
Sbjct: 50  SVVVNTV-------ASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDK 102

Query: 205 KYYRYE--LEPP---------HVLITATAAGNRLYLFSVTGN 235
            YY  E  +  P         H L +   +  ++Y  SV+  
Sbjct: 103 TYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAP 144

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 39/152 (25%)

Query: 111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKG--RLFVIVAPVLRFADDLGDDATIE 168
            +   +P +W   P    +  G    LRF         + V + P         D  +I 
Sbjct: 16  GFKLQIPSKW--NPNKEVEYPG--QVLRFEDNFDATSNVIVAITPT--------DKKSIT 63

Query: 169 KIGPPEKVINAFGPEVIGENVEGK----------------VLSMDVEELCGRKYYRYELE 212
             G PE+ ++     +  +   GK                VL     E+ G++YY   + 
Sbjct: 64  DFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSIL 123

Query: 213 ---------PPHVLITATAAGNRLYLFSVTGN 235
                      H L+TAT    +LY+      
Sbjct: 124 TRTADGNEGGKHQLVTATVNDGKLYICKAQAG 155

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 31/158 (19%)

Query: 88  GWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRL 147
             + Y    D              Y F  P  W  V V  A   G ++  R    +   L
Sbjct: 13  SLQRYSDTKDG-------------YEFLYPNGWIGVDVKGAS-PGVDVVFRDLIERDENL 58

Query: 148 FVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVI---GENVEGKVLSMDVEELCGR 204
            VI++ +         D T+  +G    V   F   V      + + ++++ +  +  G+
Sbjct: 59  SVIISEIPS-------DKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQ 111

Query: 205 KYYRYELE-------PPHVLITATAAGNRLYLFSVTGN 235
            YY  E           H L + T    +L  F ++  
Sbjct: 112 VYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTA 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.97
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.94
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	96.63

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=3.2e-33  Score=239.47  Aligned_cols=139  Identities=20%  Similarity=0.415  Sum_probs=113.8

Q ss_pred             CCCCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCC
Q 025555           85 DEQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLG  162 (251)
Q Consensus        85 ~~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~  162 (251)
                      ...||++|..    .           +|+|+||++|+++++.  +.  +|+|++|+|+  .++||+|+|+|+        
T Consensus         5 ~~~g~~~y~~----~-----------gysf~yP~~W~~~~~~--~~--~G~~~~f~d~~~~~~nvsV~v~p~--------   57 (177)
T 1v2b_A            5 TDTDFQTYNG----D-----------GFKLQIPSKWNPNKEV--EY--PGQVLRFEDNFDATSNVIVAITPT--------   57 (177)
T ss_dssp             --CCEEEEEC----S-----------SEEEEEETTCEECCCC--CS--TTEEEEEEETTEEEEEEEEEEEEC--------
T ss_pred             CCCCceEEec----C-----------CEEEEcCCCCcccccc--cC--CCceEEEeCCcCCCccEEEEEeCC--------
Confidence            3689999982    1           4999999999998884  33  4679999996  468999999999        


Q ss_pred             CCCCccccCCHHHHHHhhCccc----cCcc------------cccceeeeeeEEeCCeeeEEEEEc---------CCceE
Q 025555          163 DDATIEKIGPPEKVINAFGPEV----IGEN------------VEGKVLSMDVEELCGRKYYRYELE---------PPHVL  217 (251)
Q Consensus       163 ~~~sI~dLGspeev~~~l~~~l----~g~~------------~e~~ll~a~~~e~~G~tYY~yEl~---------~pH~L  217 (251)
                      ++++|+|||+|++|++.++..|    +...            .+++|+++++++.+|++||+|||.         .+|+|
T Consensus        58 ~~~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l  137 (177)
T 1v2b_A           58 DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQL  137 (177)
T ss_dssp             SCSSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEE
T ss_pred             CCCChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEE
Confidence            4489999999999766654333    3221            247999999999999999999995         23999


Q ss_pred             EEEEEeCCeEEEEEeecCCccccch-hhhhcccc
Q 025555          218 ITATAAGNRLYLFSVTGNGMVFYPT-FCNIINAE  250 (251)
Q Consensus       218 ~saTV~~GkLYtl~v~a~e~rW~k~-~~~Lr~a~  250 (251)
                      +++||++||||+|+++++|+||+++ ++.|++++
T Consensus       138 ~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l~~v~  171 (177)
T 1v2b_A          138 VTATVNDGKLYICKAQAGDKRWFKGAKKFVENTA  171 (177)
T ss_dssp             EEEEEETTEEEEEEEEEEGGGCSTTTTHHHHHHH
T ss_pred             EEEEEECCEEEEEEEecCHHHhhhhHHHHHHHHH
Confidence            9999999999999999999999996 99998763

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.97  E-value=6.8e-31  Score=219.92  Aligned_cols=139  Identities=20%  Similarity=0.328  Sum_probs=121.4

Q ss_pred             CCCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCCC
Q 025555           86 EQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLGD  163 (251)
Q Consensus        86 ~~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~~  163 (251)
                      ..||++|.+|..             +|+|.||++|+++.+++      |+|++|+|+  ..++|+|+|.|+.       +
T Consensus         5 ~~g~~~~~D~~~-------------gysf~~P~~W~~~~~~~------g~~v~f~d~~~~~~~v~V~v~p~~-------~   58 (165)
T 2xb3_A            5 TSGLQAYVDSYD-------------GYEFLYPRGWVQVQVED------PVDVVFHDIIETTENVSVVVNTVA-------S   58 (165)
T ss_dssp             -CCEEEEEETTT-------------TEEEEEETTEEEECCCT------TEEEEEEESSCTTSEEEEEEEECS-------S
T ss_pred             CCCceEEEcCCC-------------CEEEEcCCCCeEecCCC------CceEEEECcccCCceEEEEEecCC-------C
Confidence            379999998743             59999999999988742      679999995  4679999999993       3


Q ss_pred             CCCccccCCHHHHHHhhCccccCcc--c-ccceeeeeeEEeCCeeeEEEEEc----C-------CceEEEEEEeCCeEEE
Q 025555          164 DATIEKIGPPEKVINAFGPEVIGEN--V-EGKVLSMDVEELCGRKYYRYELE----P-------PHVLITATAAGNRLYL  229 (251)
Q Consensus       164 ~~sI~dLGspeev~~~l~~~l~g~~--~-e~~ll~a~~~e~~G~tYY~yEl~----~-------pH~L~saTV~~GkLYt  229 (251)
                      .++|+|||+|+++++.|++..++.+  . +++|++++.++.+|++||+|||.    .       +|+|+++||.+||||+
T Consensus        59 ~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~  138 (165)
T 2xb3_A           59 TKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYT  138 (165)
T ss_dssp             CCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEE
T ss_pred             CCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEE
Confidence            5899999999999999998877654  3 67999999999999999999996    2       2999999999999999


Q ss_pred             EEeecCCccccchhhhhcccc
Q 025555          230 FSVTGNGMVFYPTFCNIINAE  250 (251)
Q Consensus       230 l~v~a~e~rW~k~~~~Lr~a~  250 (251)
                      |++++||+||.+++++|+++.
T Consensus       139 l~~sape~~w~~~~~~l~~v~  159 (165)
T 2xb3_A          139 LSVSAPEERWPKVEDQFKTIV  159 (165)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHH
T ss_pred             EEEecCHHHhHHHHHHHHHHH
Confidence            999999999999999998763

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.94  E-value=5.8e-32  Score=228.70  Aligned_cols=141  Identities=20%  Similarity=0.297  Sum_probs=123.5

Q ss_pred             CCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCCC--CCcEEEEEEeeccccccCCCC
Q 025555           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK--KGRLFVIVAPVLRFADDLGDD  164 (251)
Q Consensus        87 ~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~--~~~vsVvv~p~~rl~~~~~~~  164 (251)
                      .||++|.++..             +|+|.||++|+++.+++   +++|+|++|+|+.  ++||+|+|+|+.       .+
T Consensus        12 ~g~~~y~d~~~-------------gy~f~~P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~~-------~~   68 (170)
T 2lnj_A           12 ASLQRYSDTKD-------------GYEFLYPNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEIP-------SD   68 (170)
Confidence            79999997643             49999999999988753   2356799999955  579999999994       35


Q ss_pred             CCccccCCHHHHHHhhCccccCcc---cccceeeeeeEEeCCeeeEEEEEcC-------CceEEEEEEeCCeEEEEEeec
Q 025555          165 ATIEKIGPPEKVINAFGPEVIGEN---VEGKVLSMDVEELCGRKYYRYELEP-------PHVLITATAAGNRLYLFSVTG  234 (251)
Q Consensus       165 ~sI~dLGspeev~~~l~~~l~g~~---~e~~ll~a~~~e~~G~tYY~yEl~~-------pH~L~saTV~~GkLYtl~v~a  234 (251)
                      ++|+|||+||+|++.|++.++..+   .+++|+++++++.+|++||+|||..       +|+|++++|.+||||+|.+++
T Consensus        69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~a  148 (170)
T 2lnj_A           69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLST  148 (170)
Confidence            999999999999999999877765   2689999999999999999999972       399999999999999999999


Q ss_pred             CCccccchhhhhcccc
Q 025555          235 NGMVFYPTFCNIINAE  250 (251)
Q Consensus       235 ~e~rW~k~~~~Lr~a~  250 (251)
                      ||+||.+.+++|+++.
T Consensus       149 pe~~w~~~~~~l~~v~  164 (170)
T 2lnj_A          149 AEDRWDTVKSLFDTVA  164 (170)
Confidence            9999999999998864

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=96.63  E-value=0.014  Score=47.35  Aligned_cols=119  Identities=7%  Similarity=0.058  Sum_probs=71.9

Q ss_pred             ccceEEecCCCCcccccccccCCCCceeEEEeCCC-CCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccCc
Q 025555          109 IIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK-KGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGE  187 (251)
Q Consensus       109 i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~-~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g~  187 (251)
                      +.+++|.+|.+|++..+.         ..++-++. .+..+++|+-..     +.+..+++++=.  .-++.+.     .
T Consensus         8 ~~Egsl~lP~gw~D~t~n---------v~~~~~~~~~g~~~lvIsR~~-----~~~~~~l~~~~~--~q~~~l~-----~   66 (148)
T 1tu1_A            8 LHEADLEIPDAWQDQSIN---------IFKLPASGPAREASFVISRDA-----SQGDAPFADYVA--RQLENAE-----K   66 (148)
T ss_dssp             CSSEEEEEETTSEECCBE---------EEEECCBTTBCCEEEEEEEEC-----CCTTSCHHHHHH--HHHHHHH-----H
T ss_pred             ECCEEEeCCCCcEeeeEE---------EEEcCCCCCCCceEEEEEecc-----CCCCCCHHHHHH--HHHHHHH-----h
Confidence            346899999999966652         13333322 111666664331     123444444411  1112221     1


Q ss_pred             cccc-ceeeeeeEEeCCeeeEEEEEc--C---C-ceEEEEEEeCCeEEEEEeecCCccccchhhhhcc
Q 025555          188 NVEG-KVLSMDVEELCGRKYYRYELE--P---P-HVLITATAAGNRLYLFSVTGNGMVFYPTFCNIIN  248 (251)
Q Consensus       188 ~~e~-~ll~a~~~e~~G~tYY~yEl~--~---p-H~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr~  248 (251)
                      .+.+ +++.....+.+|..--.+|+.  .   + |+...+.+..+++|+|+.+++..-|...+..++.
T Consensus        67 ~l~~y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~  134 (148)
T 1tu1_A           67 QLPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQ  134 (148)
T ss_dssp             HSTTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHH
T ss_pred             hCcCcEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHH
Confidence            1111 444555555678777777763  2   1 9999998887799999999999999988877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-14

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 35/147 (23%)

Query: 112 YLFSVPQEWDEVPVSIADLGGTEIDLRFASPKKGRLFVIVAPVLRFADDLGDDATIEKIG 171
           +   +P +W   P    +  G  +           + V + P         D  +I   G
Sbjct: 11  FKLQIPSKW--NPNKEVEYPGQVLRFEDNFDATSNVIVAITPT--------DKKSITDFG 60

Query: 172 PPEKVINAFGPEVIGENVEGK----------------VLSMDVEELCGRKYYRYELEPP- 214
            PE+ ++     +  +   GK                VL     E+ G++YY   +    
Sbjct: 61  SPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRT 120

Query: 215 --------HVLITATAAGNRLYLFSVT 233
                   H L+TAT    +LY+    
Sbjct: 121 ADGNEGGKHQLVTATVNDGKLYICKAQ 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.97
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.65

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.97  E-value=5.4e-31  Score=220.69  Aligned_cols=136  Identities=21%  Similarity=0.391  Sum_probs=111.8

Q ss_pred             CCceEEecCCCCCCCCCCCCccccceEEecCCCCcccccccccCCCCceeEEEeCC--CCCcEEEEEEeeccccccCCCC
Q 025555           87 QGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQEWDEVPVSIADLGGTEIDLRFASP--KKGRLFVIVAPVLRFADDLGDD  164 (251)
Q Consensus        87 ~gf~~y~~p~~~~Gg~g~~~~~i~~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~--~~~~vsVvv~p~~rl~~~~~~~  164 (251)
                      ++|++|.+.               +|+|+||++|.++.+.    ++.|+|++|+|+  .++||+|+|+|+        ++
T Consensus         1 ~~~~~y~~d---------------gy~f~~P~~W~~~~~~----~~~g~d~~f~d~~~~~~nv~V~v~p~--------~~   53 (171)
T d1v2ba_           1 TDFQTYNGD---------------GFKLQIPSKWNPNKEV----EYPGQVLRFEDNFDATSNVIVAITPT--------DK   53 (171)
T ss_dssp             CCEEEEECS---------------SEEEEEETTCEECCCC----CSTTEEEEEEETTEEEEEEEEEEEEC--------SC
T ss_pred             CCcccccCC---------------CEEEECCCCCceeccc----CCCCceEEEeccccCCceEEEEEecC--------CC
Confidence            468889852               3999999999876653    334679999995  467999999998        56


Q ss_pred             CCccccCCHHHHHHhhCccccCccc----------------ccceeeeeeEEeCCeeeEEEEEcC---------CceEEE
Q 025555          165 ATIEKIGPPEKVINAFGPEVIGENV----------------EGKVLSMDVEELCGRKYYRYELEP---------PHVLIT  219 (251)
Q Consensus       165 ~sI~dLGspeev~~~l~~~l~g~~~----------------e~~ll~a~~~e~~G~tYY~yEl~~---------pH~L~s  219 (251)
                      ++|+|||+|+++++.+++.+....+                +++|+++++++.+|++||.|||.+         +|+|++
T Consensus        54 ~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~  133 (171)
T d1v2ba_          54 KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVT  133 (171)
T ss_dssp             SSGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEE
T ss_pred             cchhhccChHHHHHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEE
Confidence            8999999999999999887754321                357999999999999999999952         299999


Q ss_pred             EEEeCCeEEEEEeecCCccccchh-hhhccc
Q 025555          220 ATAAGNRLYLFSVTGNGMVFYPTF-CNIINA  249 (251)
Q Consensus       220 aTV~~GkLYtl~v~a~e~rW~k~~-~~Lr~a  249 (251)
                      +||.+||||+|++++||+||.++. ..|+++
T Consensus       134 ~~v~~grLYtl~~~~pe~~w~~~~~~~l~~~  164 (171)
T d1v2ba_         134 ATVNDGKLYICKAQAGDKRWFKGAKKFVENT  164 (171)
T ss_dssp             EEEETTEEEEEEEEEEGGGCSTTTTHHHHHH
T ss_pred             EEEeCCEEEEEEEecCHHHhhhhhHHHHHHH
Confidence            999999999999999999999865 458765

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.65  E-value=9.6e-05  Score=57.72  Aligned_cols=116  Identities=6%  Similarity=0.014  Sum_probs=75.7

Q ss_pred             ceEEecCCCCcccccccccCCCCceeEEEeCCC-CCcEEEEEEeeccccccCCCCCCccccCCHHHHHHhhCccccCccc
Q 025555          111 PYLFSVPQEWDEVPVSIADLGGTEIDLRFASPK-KGRLFVIVAPVLRFADDLGDDATIEKIGPPEKVINAFGPEVIGENV  189 (251)
Q Consensus       111 ~Y~F~~P~gW~ev~Vs~~d~~g~g~D~rF~d~~-~~~vsVvv~p~~rl~~~~~~~~sI~dLGspeev~~~l~~~l~g~~~  189 (251)
                      .=+|.+|.||++..+.         .+++-++. ....+++|+-..     +.+..+++|+  .++-++.|-     ..+
T Consensus        10 Egs~~lP~gw~d~t~n---------i~~~~~~~~~~~~~lvIsr~~-----l~~~~~l~~~--~~~~~~~l~-----~~l   68 (144)
T d1tu1a_          10 EADLEIPDAWQDQSIN---------IFKLPASGPAREASFVISRDA-----SQGDAPFADY--VARQLENAE-----KQL   68 (144)
T ss_dssp             SEEEEEETTSEECCBE---------EEEECCBTTBCCEEEEEEEEC-----CCTTSCHHHH--HHHHHHHHH-----HHS
T ss_pred             CEEEeCCCCceeCcce---------EEEecCCCCCcceEEEEEeec-----CCCCCCHHHH--HHHHHHHHH-----hhC
Confidence            4589999999987763         25555533 233455553221     1234454444  333333331     222


Q ss_pred             c-cceeeeeeEEeCCeeeEEEEEcC--C----ceEEEEEEeCCeEEEEEeecCCccccchhhhhc
Q 025555          190 E-GKVLSMDVEELCGRKYYRYELEP--P----HVLITATAAGNRLYLFSVTGNGMVFYPTFCNII  247 (251)
Q Consensus       190 e-~~ll~a~~~e~~G~tYY~yEl~~--p----H~L~saTV~~GkLYtl~v~a~e~rW~k~~~~Lr  247 (251)
                      . =++++.+..+.+|+.-+..|+.-  +    |+..++...++++|+|+.+++...|......+.
T Consensus        69 ~~~~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~  133 (144)
T d1tu1a_          69 PGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWK  133 (144)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHH
T ss_pred             CCcEEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHH
Confidence            2 26677777788999988888742  2    999999999999999999999999887766554