Citrus Sinensis ID: 025558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Secondary Structure (PSIPRED)
ccccEEEcccccccccccccEEEccccccHHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEcEEEEEEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdryqrvekpkaeapineneiRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAglhqntsigstditdmwepleegllplettrHVSMITITLSkkdldtsstgyqpplpadqvkpwnefedegegsprgrgrgrggrgrgrgrggfyngagdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Flexible Loop (DISEMBL)
mdryqrvekpkaeapineneirittqgrmRNYITYATtllqekgsnEIVLKAMGRAINKTVMIAELIKRRiaglhqntsigstditdMWEPLEEGLLPLETTRHVSMITITlskkdldtsstgyqpplpadqvkpWNEFEdegegsprgrgrgrggrgrgrgrggfyngagdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Low Complexity Region (SEG)
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWepleegllpleTTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPrgrgrgrggrgrgrgrggFYNGAGDYNVdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygELEAPPVgrgrgrgrargrgrgrnprsggPFQAVGA
Disordered region (IsUnstruct)
********************IRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL*******************************************************************************************Y*****GYYDY*************************************
Disordered Region (DISOPRED)
**RYQRVEKP*AE*PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQ**L***************************************************************************************************************************
Disordered Region (DISEMBL)
************EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNE*********************GRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV*****************************
Disordered Region (DISPRO)
**RYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQV***************************************YNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q99JH1	163	Ribonuclease P protein su	yes	no	0.505	0.779	0.345	4e-15
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.470	0.723	0.358	2e-14
Q9BUL9	199	Ribonuclease P protein su	no	no	0.438	0.552	0.35	1e-13
Q5PPN2	199	Ribonuclease P protein su	no	no	0.430	0.542	0.330	2e-13
Q91WE3	199	Ribonuclease P protein su	no	no	0.426	0.537	0.333	3e-13
Q2KIR4	163	Ribonuclease P protein su	no	no	0.470	0.723	0.341	5e-13

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 1   MDRYQRV-------EKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
           M++Y+R          P  + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct: 1   MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query: 54  GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 111
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 112 LSKKDLDTSSTGYQPP 127
           LS+  LD S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.
Mus musculus (taxid: 10090)

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 10  PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
           P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
           R+ GLHQ T +      D W P   + GL PL   RHV  + + LS+  LD +  GYQPP
Sbjct: 77  RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

May be a component of ribonuclease P or MRP.

Homo sapiens (taxid: 9606)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
            +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T 
Sbjct: 37  HMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96

Query: 80  IGSTDITDMWEPLE----EGLLP------LETTRHVSMITITLSKKDLDTSSTGYQPPLP 129
           +    + ++W+ L     +G  P      L   ++V  + I LSK  LD    GYQPP P
Sbjct: 97  LRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
            +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T 
Sbjct: 37  HMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96

Query: 80  IGSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
           +    + ++W+ L           +    L   ++V  + I LSK  LD    GYQPP
Sbjct: 97  LRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 21  IRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSI 80
           +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
               + ++W+ L           +    L   ++V  + I LSK  LD    GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 10  PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
           P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct: 17  PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
           R+ GL+Q T +      D W P   + GL PL    HV  + + LS+  LD +  GYQPP
Sbjct: 77  RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,298,081
Number of Sequences: 539616
Number of extensions: 6297235
Number of successful extensions: 53193
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 751
Number of HSP's that attempted gapping in prelim test: 20045
Number of HSP's gapped (non-prelim): 11850
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.864	0.618	0.816	3e-80
449448448	254	PREDICTED: ribonuclease P protein subuni	0.876	0.866	0.838	8e-79
356516323	241	PREDICTED: alba-like protein C9orf23 hom	0.860	0.896	0.817	7e-77
255585648	257	conserved hypothetical protein [Ricinus	1.0	0.976	0.727	1e-75
296082548	282	unnamed protein product [Vitis vinifera]	0.996	0.886	0.707	4e-75
356509014	261	PREDICTED: uncharacterized protein LOC10	0.860	0.827	0.809	7e-75
225438471	255	PREDICTED: uncharacterized protein LOC10	0.996	0.980	0.707	8e-75
357464475	245	Ribonuclease P protein subunit p25 [Medi	0.840	0.861	0.726	7e-74
84468342	248	hypothetical protein [Trifolium pratense	0.880	0.891	0.806	2e-73
225460634	259	PREDICTED: uncharacterized protein LOC10	0.717	0.694	0.845	2e-71

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 188/218 (86%), Gaps = 1/218 (0%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA++PINENEIRITTQGRMRNYITYATTL QEKGS+EIV+KAMGRAINKT
Sbjct: 107 MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 166

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 167 VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 226

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDG 180
           STGYQPPLPADQVKP NE+EDEGEGSPR RGRGRG         G YNG G    DGWDG
Sbjct: 227 STGYQPPLPADQVKPLNEYEDEGEGSPRMRGRGRGRGRGRGRGRGMYNG-GMEYGDGWDG 285

Query: 181 GRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELE 218
           GRG+GGRGRGR  G +FRGRG GYG+Q  G YDYGE +
Sbjct: 286 GRGYGGRGRGRAWGHAFRGRGRGYGAQPVGQYDYGEYD 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448448|ref|XP_004141978.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus] gi|449497693|ref|XP_004160481.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 187/223 (83%), Positives = 196/223 (87%), Gaps = 3/223 (1%)

Query: 1   MDRYQRVEKPKAE-APINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINK 59
           MDRYQRVEKPK+E  PINENEIRITTQGRMRNYITYATTLLQEKGSNEIV+K MGRAINK
Sbjct: 1   MDRYQRVEKPKSENTPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVVKGMGRAINK 60

Query: 60  TVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDT 119
           TVMIAELIKRRI GLHQNT+IGSTDITDMWEPLEEGLLPLETTRHVSM++ITLSKK+LDT
Sbjct: 61  TVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSMVSITLSKKELDT 120

Query: 120 SSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWD 179
           SSTGYQ PLP DQVKPWNEFEDEG+GSPR RGRGRG           YNG  +Y  DGWD
Sbjct: 121 SSTGYQSPLPVDQVKPWNEFEDEGDGSPRIRGRGRGRGRGRGRGN--YNGPSEYQGDGWD 178

Query: 180 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV 222
           GGRGFG RGRGRGRGR+FRGRG GYG QSGGYYDYGE  APPV
Sbjct: 179 GGRGFGPRGRGRGRGRAFRGRGRGYGRQSGGYYDYGEPMAPPV 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516323|ref|XP_003526845.1| PREDICTED: alba-like protein C9orf23 homolog [Glycine max]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 179/219 (81%), Positives = 188/219 (85%), Gaps = 3/219 (1%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKAE PINENEIR+TTQGRMRNYITYATTLLQEKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDG 180
           S GYQ PLP DQVKP NE+E+EGEGSP  R RGRG         GFYNG  +Y  D WDG
Sbjct: 121 SAGYQHPLPVDQVKPLNEYEEEGEGSP--RMRGRGRGRGRGRGRGFYNGGMEYG-DDWDG 177

Query: 181 GRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEA 219
           GRG+GGRGRGR RGR+FRGRG GYG Q  GYYDYGE +A
Sbjct: 178 GRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585648|ref|XP_002533510.1| conserved hypothetical protein [Ricinus communis] gi|223526634|gb|EEF28879.1| conserved hypothetical protein [Ricinus communis]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 187/257 (72%), Positives = 195/257 (75%), Gaps = 6/257 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEK KA+ PINENEIRITTQGRMRNYITYATTLL EKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKAKADTPINENEIRITTQGRMRNYITYATTLLLEKGSDEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRR+ GLHQNTSI STDITD WEPLEEGLLPLETTRHVSM+TIT SKK+LDTS
Sbjct: 61  VMIAELIKRRVVGLHQNTSITSTDITDTWEPLEEGLLPLETTRHVSMLTITFSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGS-PRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWD 179
           STGYQPPLP DQVKP NEFEDEGEGS         G         G +NGAG+YN DGWD
Sbjct: 121 STGYQPPLPVDQVKPLNEFEDEGEGSLRMRGRGRGGWGRGRGRNRGNFNGAGEYNGDGWD 180

Query: 180 ----GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV-GRGRGRGRARGR 234
                     GRGRGR      RGRG G+G QS GYYDYGE EA PV GRG GR R RGR
Sbjct: 181 GGRGYSGRGQGRGRGRFFQGRGRGRGRGFGGQSSGYYDYGESEALPVPGRGHGRWRGRGR 240

Query: 235 GRGRNPRSGGPFQAVGA 251
             GR  RS GP QA  A
Sbjct: 241 SGGRGFRSDGPIQASAA 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082548|emb|CBI21553.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 193/256 (75%), Gaps = 6/256 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT
Sbjct: 28  MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 87

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 88  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 147

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGFYNGAGDYNV 175
           STGYQPP+P DQVKP NE E EG+ SP             GRG   G GG YN    ++ 
Sbjct: 148 STGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEYNNGDGWDG 206

Query: 176 DGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRG 235
               GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRGR R RGRG
Sbjct: 207 GRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRGRSRGRGRG 266

Query: 236 RGRNPRSGGPFQAVGA 251
           RGRN R+ GP QA+ A
Sbjct: 267 RGRNFRTEGPPQAIAA 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 179/221 (80%), Positives = 190/221 (85%), Gaps = 5/221 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKAE+PINENEIR+T+QGR RNYITYATTLLQEKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDG 180
           STGYQPPLP DQVKP NE+++EGEGSPR RGRGR          GFYNG G    DGWDG
Sbjct: 121 STGYQPPLPVDQVKPLNEYDEEGEGSPRIRGRGR--GRGRGRGRGFYNG-GMEYGDGWDG 177

Query: 181 GRGFGGRGRGRGRGRSF--RGRGWGYGSQSGGYYDYGELEA 219
           GRG+GGRGRGR RG +F  RGRG GYG Q  GYYDYGE +A
Sbjct: 178 GRGYGGRGRGRARGHAFRGRGRGRGYGVQPVGYYDYGEYDA 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438471|ref|XP_002277849.1| PREDICTED: uncharacterized protein LOC100254260 [Vitis vinifera] gi|147856397|emb|CAN82465.1| hypothetical protein VITISV_002662 [Vitis vinifera]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 193/256 (75%), Gaps = 6/256 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGFYNGAGDYNV 175
           STGYQPP+P DQVKP NE E EG+ SP             GRG   G GG YN    ++ 
Sbjct: 121 STGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEYNNGDGWDG 179

Query: 176 DGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRG 235
               GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRGR R RGRG
Sbjct: 180 GRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRGRSRGRGRG 239

Query: 236 RGRNPRSGGPFQAVGA 251
           RGRN R+ GP QA+ A
Sbjct: 240 RGRNFRTEGPPQAIAA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464475|ref|XP_003602519.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491567|gb|AES72770.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  283 bits (723), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 167/230 (72%), Positives = 175/230 (76%), Gaps = 19/230 (8%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA++PINENEIRITTQGRMRNYITYATTL QEKG+ EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGTEEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           V I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDG 180
           STGYQPPLPADQVKP NE+E+EGEGSPR RGRGRG         G YNG          G
Sbjct: 121 STGYQPPLPADQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGRGMYNG----------G 170

Query: 181 GRGFGGRGRGRGRGRSFRGRGW---------GYGSQSGGYYDYGELEAPP 221
                G   GRG G   RGR W         GYG+Q  GYYD GE +APP
Sbjct: 171 MEYGDGYDGGRGYGGRGRGRAWGRAFRGRGRGYGAQPVGYYDNGEYDAPP 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468342|dbj|BAE71254.1| hypothetical protein [Trifolium pratense]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 179/222 (80%), Positives = 191/222 (86%), Gaps = 1/222 (0%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA+ PINENEIRITTQGRMRNYITYATTL QEKG++EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADGPINENEIRITTQGRMRNYITYATTLFQEKGTDEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           V I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VTITELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAG-DYNVDGWD 179
           STGYQPPLPADQVKP NE+E++GEGSPR RGRGRG         G YN  G +Y  DGWD
Sbjct: 121 STGYQPPLPADQVKPLNEYEEDGEGSPRMRGRGRGRGRGRGRGRGMYNNGGMEYGGDGWD 180

Query: 180 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPP 221
           GGRG+GGRGRGR  GR+FRGRG GYG+Q  GYYD GE +APP
Sbjct: 181 GGRGYGGRGRGRAWGRAFRGRGRGYGAQPAGYYDNGEYDAPP 222

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460634|ref|XP_002264932.1| PREDICTED: uncharacterized protein LOC100265751 [Vitis vinifera] gi|296081198|emb|CBI18224.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/181 (84%), Positives = 163/181 (90%), Gaps = 1/181 (0%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRIT QGRMRNYITYATTLLQ+KGS+EI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRPETPINENEIRITAQGRMRNYITYATTLLQDKGSDEIALKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVS+I ITLSKK+LD S
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITLSKKELDIS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVD-GWD 179
           STGYQPP+PADQV+PW E++ EGEGSP  RGRGR GRGRGRGRG   NG  +YN D GWD
Sbjct: 121 STGYQPPIPADQVRPWTEYDYEGEGSPAMRGRGRSGRGRGRGRGNNNNGMVEYNGDGGWD 180

Query: 180 G 180
           G
Sbjct: 181 G 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.585	0.42	0.695	2.3e-48
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.585	0.466	0.682	1.6e-47
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.537	0.333	0.6	5.5e-38
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.529	0.360	0.374	2.3e-16
UNIPROTKB|E1BQE8	164	RPP25 "Uncharacterized protein	0.521	0.798	0.295	5.4e-15
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.505	0.779	0.330	6.2e-14
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.505	0.779	0.330	7.9e-14
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.470	0.723	0.325	2.7e-13
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.470	0.723	0.325	2.7e-13
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.470	0.723	0.325	3.4e-13

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 103/148 (69%), Positives = 115/148 (77%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MD+YQRV KPKA+ PI+ NEIRIT+QGR RNYITYA TLLQ+KGS E+V KAMGRAINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I ELIKRRI  LHQNTSIGSTDITD W           TTRHVSMITITLSK +L+TS
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 STGYQPPLPADQVKPWNEFEDEG-EGSP 147
             S GYQ P+P + VKP  + + EG EGSP
Sbjct:   121 SVGYQCPIPIELVKPMGDIDYEGREGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 101/148 (68%), Positives = 113/148 (76%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MD+YQRVEKPKA+ PI ENEIRIT+ GR RNYITYA  LLQE  SNE++ KAMGRAINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I ELIKRRI GLHQ TSIGSTDITD W           TTRHVSMITITLSK+ L+TS
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 STGYQPPLPADQVKPWNEFEDEGE-GSP 147
             S GYQ P+P + VKP  E + EG+ GSP
Sbjct:   121 SVGYQCPIPIEMVKPLAEIDYEGQDGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 81/135 (60%), Positives = 101/135 (74%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MDRYQRV KPK E+PINENEIRIT++G +RNYI+YAT+LLQEK   +IVLKAMG+AI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I+E++K +I GLHQ+ +I S  ITD+W            TRHVSMI+ITLS  +L+  
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 STGYQPPLPADQVKP 135
             S GYQ P  +DQ KP
Sbjct:   121 SPGYQAPAQSDQSKP 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 207 (77.9 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 52/139 (37%), Positives = 76/139 (54%)

Query:     1 MDRYQRVEKPKAEAPINENEIRIT-TQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAIN 58
             MD+Y RV +   +     NE+RI     ++ + I Y   L   K  + I++KA+G + I+
Sbjct:     1 MDKYYRVPRTY-DNDTEANEVRIGGVHSQVSSSIEYGLNLFN-KPHDSIIVKAIGSKMIS 58

Query:    59 KTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLD 118
             K +  AE+IK R+ GLHQ T IG+T+I   +            ++  + I ITLSK  LD
Sbjct:    59 KAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLD 118

Query:   119 TSSTGYQPPLPAD--QVKP 135
             T++ GYQPPLP    Q KP
Sbjct:   119 TTNPGYQPPLPESETQKKP 137

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BQE8 RPP25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 42/142 (29%), Positives = 75/142 (52%)

Query:     1 MDRYQRVEKPKAEAPIN-EN------EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M+ +++V   + E+P+   N      E+++    ++RN +++A   ++ KGS +IV    
Sbjct:     1 MENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGC 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXX----XXXXXXXTTRHVSMIT 109
             GRA+ KT+   E++KR++ GLHQ T +    + ++W                 ++V  I 
Sbjct:    61 GRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSIC 120

Query:   110 ITLSKKDLDTSSTGYQPPLPAD 131
             I LS+  LD + TGYQPP P +
Sbjct:   121 ILLSRDPLDPNQTGYQPPEPRE 142

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/136 (33%), Positives = 65/136 (47%)

Query:     1 MDRYQR---VEKPKA----EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M+ Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct:     1 MEHYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALARLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKDLDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 45/136 (33%), Positives = 66/136 (48%)

Query:     1 MDRYQR---VEKPKA----EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M++Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct:     1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKDLDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019343001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (241 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
pfam01918	67	pfam01918, Alba, Alba	2e-22
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	2e-11
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	7e-10
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	7e-08
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	6e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.002
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	0.002
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	0.003
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.004

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 86.9 bits (216), Expect = 2e-22
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLHQN 77
          N I ++++  + NY+  A  LL+  G++E+VLK +GRAI+K V +AE++KRR   GLHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 78 TSIGST 83
            I ST
Sbjct: 61 NVITST 66

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 14/103 (13%)

Query: 15  PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRR-IAG 73
              EN + +  +  M NY+    T   + G+ E+V+KA GRAI+K V +AE+++ R +  
Sbjct: 1   MAEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFLPD 58

Query: 74  LH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
           +  +   IG+ ++T      E+G        +VS I I L KK
Sbjct: 59  VEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIVLEKK 91

Length = 91

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRR-IAGLH- 75
           EN + +  +  M NY+    T   E G++E+++KA GRAI+K V +AE+++ R I  +  
Sbjct: 4   ENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDVQI 61

Query: 76  QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
           ++  IG+ ++       E+G      TR+VS I I L+KK
Sbjct: 62  KDIKIGTEEL-----EGEDG-----RTRNVSTIEIVLAKK 91

Length = 91

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 41  QEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITD---MWEPLEEGLL 97
           +     E+V+K MG+AI K + +A   +R       +   G+ ++ D     E  ++   
Sbjct: 36  EGLKLEEVVVKGMGKAIEKALSLALHFQRE-KNYKVDVRTGTVEVVDEIVEDEDDDDDEE 94

Query: 98  PLETTRHVSMITI 110
           P    R VS + +
Sbjct: 95  PETRKRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           EN + I  +  M NY+    T L   G++E+++KA GRAI++ V +AE+++ R       
Sbjct: 1   ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRF------ 52

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             I    I  +    EE         +VS I I L+K
Sbjct: 53  --IPDIKIKKIKIGTEEIKSEQGREVNVSTIEIVLAK 87

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/61 (44%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 150 RGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSG 209
              G  G GRG GRGG   G       G  G  G  G GRGRGRG    GRG G G   G
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGR-----GGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPG 55

Query: 210 G 210
            
Sbjct: 56  K 56

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 140 EDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRG 199
           ED    + RG    R  RGR        +     +    + GR  GG  RGR R R  R 
Sbjct: 179 EDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE-ERGRRDGGDRRGRRRRRD-RR 236

Query: 200 RGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGG 244
              G  ++       G+      GR   R R R R   R    G 
Sbjct: 237 DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGN 281

Length = 672

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 22/54 (40%)

Query: 148 RGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRG 201
            G   G  G GRG G GG   G G     G   GRG GG G GRG G       
Sbjct: 3   GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 28/57 (49%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 143 GEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRG 199
           G G  RG GRG GG G GRG GG   G G     G   GRG GG GRG G G     
Sbjct: 5   GFGGGRGGGRG-GGGGGGRGGGGRGGGRG----GGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 17/52 (32%)

Query: 143 GEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRG 194
           GEG  +      GGRGR RGRG                  G GGRGRG  RG
Sbjct: 507 GEGISKVGQSY-GGRGRTRGRGR----------------GGGGGRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/96 (32%), Positives = 31/96 (32%), Gaps = 40/96 (41%)

Query: 148 RGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQ 207
              G   GGRG GRG GG              GGRG GGRG GRG GR            
Sbjct: 1   GMGGGFGGGRGGGRGGGG-------------GGGRGGGGRGGGRGGGR------------ 35

Query: 208 SGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSG 243
                          GRGRG G     G G      
Sbjct: 36  ---------------GRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 18/65 (27%), Positives = 20/65 (30%)

Query: 137 NEFEDEGEGSPRGRGRGRGGRGRGRGRGGFYNGAGDYNVDGWDGGRGFGGRGRGRGRGRS 196
            E     +G  R   R R  R   RG     +       DG   G   G R R R R   
Sbjct: 215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGR 274

Query: 197 FRGRG 201
             G G
Sbjct: 275 RGGDG 279

Length = 672

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 17/37 (45%), Positives = 18/37 (48%)

Query: 128 LPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRG 164
            PA   K    FE + E      GRG  GRGRG GRG
Sbjct: 88  FPATHKKKSVNFERKTEEEGSRGGRGGRGRGRGYGRG 124

Length = 124

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 19/65 (29%), Positives = 26/65 (40%)

Query: 180 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRN 239
             RG GGRG+G GRG+       G G          E  +  +G  +  G  + R R R 
Sbjct: 392 QQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRK 451

Query: 240 PRSGG 244
           P +  
Sbjct: 452 PAAAQ 456

Length = 456

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 180 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRN 239
           G  G  G GRG GRG    G G G G + GG            G GRGRGR  G G    
Sbjct: 1   GMGGGFGGGRGGGRG-GGGGGGRGGGGRGGGR-----------GGGRGRGRGGGGGGRGG 48

Query: 240 PRSGGPFQAV 249
              GGP + +
Sbjct: 49  GGGGGPGKVI 58

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.84
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.8
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.78
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.68
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.44
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.93
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.74
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	95.75
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	92.51
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.39
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	86.37

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.3e-47  Score=322.61  Aligned_cols=144  Identities=44%  Similarity=0.682  Sum_probs=140.3

Q ss_pred             CCCceeccCCCCCCCCCCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEE
Q 025558            1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSI   80 (251)
Q Consensus         1 Md~Y~rv~kp~~~~p~~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I   80 (251)
                      ||.|++|.||++++|++.|+|+|+.+++|+|||.||+.+|+++.+.+|||+|||+||+|||+||||||+|+++|||.|.|
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEecccccccccCCCcceeeeeeeEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 025558           81 GSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGE  144 (251)
Q Consensus        81 ~sv~i~d~~ePleEGld~~~~~R~VS~I~ItLSk~~lD~~~pGYQ~Pl~~~~vk~~~~~~~~~~  144 (251)
                      .+++|+|.|+|++|||++++++||||+|+|+||+++||++++|||+|.|..+.+.+...+|+..
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~~~  144 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYSPR  144 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcccc
Confidence            9999999999999999999999999999999999999999999999999999998888887654

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.84  E-value=2.1e-20  Score=146.23  Aligned_cols=90  Identities=34%  Similarity=0.458  Sum_probs=73.6

Q ss_pred             CCCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccC
Q 025558           16 INENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG   95 (251)
Q Consensus        16 ~~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEG   95 (251)
                      ..+|+|+|++|+.| +||.+++.+|+ ++.++|+|||+|+||+|||+|||+||+||...++   +..+++.++-...++|
T Consensus         2 ~~en~i~Ig~kpvm-nYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~---v~~I~i~se~i~~~~g   76 (91)
T PRK04015          2 AEENVVLVGKKPVM-NYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVE---IKEIKIGTEEVTSEDG   76 (91)
T ss_pred             CCCCEEEEcCCcHH-HHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCeE---EEEEEeccEEeecCCC
Confidence            36799999998555 99999999999 4899999999999999999999999999865454   4455554443333455


Q ss_pred             CCcceeeeeeeEEEEEEecC
Q 025558           96 LLPLETTRHVSMITITLSKK  115 (251)
Q Consensus        96 ld~~~~~R~VS~I~ItLSk~  115 (251)
                           .+|+||+|+|+|+|+
T Consensus        77 -----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         77 -----RESNVSTIEIVLEKK   91 (91)
T ss_pred             -----cEEEEEEEEEEEecC
Confidence                 789999999999974

>TIGR00285 DNA-binding protein Alba

Probab=99.80  E-value=4e-19  Score=137.86  Aligned_cols=87  Identities=34%  Similarity=0.454  Sum_probs=75.6

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCCC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGld   97 (251)
                      +|.|+|++|+-| +||..++.+|++ +.++|+|||+|+||+|||+|||+||+||...+   ++..+++.++-.+.++|  
T Consensus         1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G--   73 (87)
T TIGR00285         1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG--   73 (87)
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence            489999999777 999999999986 89999999999999999999999999986543   56777777666666677  


Q ss_pred             cceeeeeeeEEEEEEec
Q 025558           98 PLETTRHVSMITITLSK  114 (251)
Q Consensus        98 ~~~~~R~VS~I~ItLSk  114 (251)
                         .+++||+|+|+|++
T Consensus        74 ---~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 ---REVNVSTIEIVLAK   87 (87)
T ss_pred             ---ceeeEEEEEEEEeC
Confidence               77899999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.78  E-value=2e-18  Score=133.57  Aligned_cols=89  Identities=37%  Similarity=0.523  Sum_probs=77.7

Q ss_pred             CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCC
Q 025558           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (251)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGl   96 (251)
                      ++|.|+|.+|+.| |||..++.+|++ +.++|+|||.|+||||||++||+|+.||--   .++|..|+|.++-...+++ 
T Consensus         3 ~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p---~v~ik~Iki~se~~~~~~g-   76 (91)
T COG1581           3 EENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIP---DVQIKDIKIGTEELEGEDG-   76 (91)
T ss_pred             CccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCC---CceEEEEEecceeeecCCC-
Confidence            4699999999777 999999999997 799999999999999999999999999832   4568888887776666666 


Q ss_pred             CcceeeeeeeEEEEEEecC
Q 025558           97 LPLETTRHVSMITITLSKK  115 (251)
Q Consensus        97 d~~~~~R~VS~I~ItLSk~  115 (251)
                          .+++||+|+|.|.+.
T Consensus        77 ----r~~~VS~IeI~L~k~   91 (91)
T COG1581          77 ----RTRNVSTIEIVLAKK   91 (91)
T ss_pred             ----ceeeEEEEEEEEecC
Confidence                678999999999873

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.68  E-value=2.6e-16  Score=115.75  Aligned_cols=64  Identities=39%  Similarity=0.654  Sum_probs=57.0

Q ss_pred             CeEEEcCCCchHHHHHHHHHHH---hhcCCCeEEEEEcChhHHHHHHHHHHHHHHhc-CceeeeEEEE
Q 025558           19 NEIRITTQGRMRNYITYATTLL---QEKGSNEIVLKAMGRAINKTVMIAELIKRRIA-GLHQNTSIGS   82 (251)
Q Consensus        19 NeIrVt~k~~i~~yV~~Al~LL---~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~-GLhQ~t~I~s   82 (251)
                      |+|+|++++++.+||.+|+++|   ++.++++|+|+|+|+||+|||+|||+||+++. +|||++.+.+
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7999999999999999999999   44479999999999999999999999999995 8999887764

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.44  E-value=4.5e-13  Score=112.81  Aligned_cols=93  Identities=25%  Similarity=0.369  Sum_probs=67.4

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhc-------------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEK-------------------G------------SNEIVLKAMGRAINKTVMIAEL   66 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~-------------------g------------~~eVvIkg~G~AIsKAV~VAEI   66 (251)
                      ++.|||+++++|-+.|..+.+||..-                   .            .++|+|||||+||+|||+||..
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            58999999999999999999999631                   1            2799999999999999999999


Q ss_pred             HHHHhcCceeeeEEEEEEecccccccc------------------cCCCcceeeeeeeEEEEE
Q 025558           67 IKRRIAGLHQNTSIGSTDITDMWEPLE------------------EGLLPLETTRHVSMITIT  111 (251)
Q Consensus        67 LKrRi~GLhQ~t~I~sv~i~d~~ePle------------------EGld~~~~~R~VS~I~It  111 (251)
                      |++.. ++.-.+.++||.+.|++++.+                  +..++..++|.||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98876 677789999999999998653                  456778999999999984

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.93  E-value=0.0043  Score=65.71  Aligned_cols=10  Identities=40%  Similarity=0.507  Sum_probs=4.7

Q ss_pred             CcCcCCCCCC
Q 025558          196 SFRGRGWGYG  205 (251)
Q Consensus       196 ~~~g~grgy~  205 (251)
                      ||++-|+||+
T Consensus      1234 GfrnnggGdy 1243 (1282)
T KOG0921|consen 1234 GFRNNGGGDY 1243 (1282)
T ss_pred             ccccCCCCCC
Confidence            4455445533

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.74  E-value=0.0084  Score=63.61  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=11.7

Q ss_pred             CCcCcCCC-CCCCCCCCCCCCCCCC
Q 025558          195 RSFRGRGW-GYGSQSGGYYDYGELE  218 (251)
Q Consensus       195 ~~~~g~gr-gy~~~~~g~~~~~~~~  218 (251)
                      .||+|-.| ||-+-.+|+|..+...
T Consensus      1225 ~GyrGvsrgGfrnnggGdyrnpggg 1249 (1282)
T KOG0921|consen 1225 NGYRGVSRGGFRNNGGGDYRNPGGG 1249 (1282)
T ss_pred             CCCccccCCccccCCCCCCCCCCCC
Confidence            34555444 3444455565554433

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=95.75  E-value=0.057  Score=52.17  Aligned_cols=19  Identities=21%  Similarity=0.043  Sum_probs=10.4

Q ss_pred             eeeeeeEEEEEEecCCCCC
Q 025558          101 TTRHVSMITITLSKKDLDT  119 (251)
Q Consensus       101 ~~R~VS~I~ItLSk~~lD~  119 (251)
                      .++..|.|+=++.-..-|.
T Consensus       287 Re~Taski~k~~igrvPDR  305 (465)
T KOG3973|consen  287 RERTASKIHKLSIGRVPDR  305 (465)
T ss_pred             hhhhhhhhcccccccCCCC
Confidence            4566677776554433244

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=92.51  E-value=4.2  Score=31.87  Aligned_cols=51  Identities=16%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             CeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHh
Q 025558           19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRI   71 (251)
Q Consensus        19 NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G-~AIsKAV~VAEILKrRi   71 (251)
                      +.++|+++++....-..-...|.+  ...|.|.++| .|+++||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~p~~vAgAIa~~lre--~~~v~lqaiGa~AvnqAvKAIAiAR~~l   53 (86)
T PF04232_consen    2 EVLKVSSKSNPNAVAGAIAGVLRE--GGKVELQAIGAGAVNQAVKAIAIARGYL   53 (86)
T ss_dssp             -EEEE-TT--HHHHHHHHHHHHHH--TSEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHhc--CCcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence            468999999996666555557766  3699999999 78998888776666554

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.39  E-value=0.42  Score=48.64  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhcCceeeeEEEEE--Eecccccc
Q 025558           59 KTVMIAELIKRRIAGLHQNTSIGST--DITDMWEP   91 (251)
Q Consensus        59 KAV~VAEILKrRi~GLhQ~t~I~sv--~i~d~~eP   91 (251)
                      .|+.+++=|-.-+..||-..-+...  .|+-.|.+
T Consensus       429 ~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~  463 (556)
T PF05918_consen  429 TALKTTNNILALIKDLFHNPPSFKSTKNITLSWKE  463 (556)
T ss_dssp             HHHHHHHHHHHHHCC----------------TTS-
T ss_pred             HHHHHHhhHHHHHHHHhhCCcccccccccceeeee
Confidence            5666666666667777654332222  25556654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=86.37  E-value=5.2  Score=35.85  Aligned_cols=8  Identities=25%  Similarity=0.239  Sum_probs=4.1

Q ss_pred             EEEEEEec
Q 025558          107 MITITLSK  114 (251)
Q Consensus       107 ~I~ItLSk  114 (251)
                      .++|+|+-
T Consensus       105 ~fsIK~~d  112 (215)
T KOG3262|consen  105 HFSIKPSD  112 (215)
T ss_pred             EEEEecCC
Confidence            45555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
2h9u_A	102	Crystal Structure Of The Archaea Specific Dna Bindi		1e-05

>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding Protein Length = 102

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
           E+RI  +  M NY+    T L E+G+N++V+KA GR IN+ V   E++++R A   +N  
Sbjct: 8   EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFA---KNIE 63
Query: 80  IGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSK 114
           I    I D              TR VS I I L K
Sbjct: 64  IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.93
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.92
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.88
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.84
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.75
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.73
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.06
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	91.77
2ek0_A	90	Stage V sporulation protein S (spovs) related Pro;	90.34

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.93  E-value=8.7e-26  Score=178.71  Aligned_cols=92  Identities=36%  Similarity=0.540  Sum_probs=84.7

Q ss_pred             CCeEEEcCCCchHHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEeccccccccc
Q 025558           18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE   94 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al-~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE   94 (251)
                      +|+|+|++|+.| +||.+|+ .||++ ++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|.++.|+|+   +
T Consensus         6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            599999999885 9999999 99994 8999999999999999999999999999 8999 999999999999854   5


Q ss_pred             CCCcceeeeeeeEEEEEEecCCC
Q 025558           95 GLLPLETTRHVSMITITLSKKDL  117 (251)
Q Consensus        95 Gld~~~~~R~VS~I~ItLSk~~l  117 (251)
                      |+   ..+|+||+|+|+|+++|.
T Consensus        81 g~---~~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           81 GQ---TRTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             SC---EEEEEEEEEEEEEEECSS
T ss_pred             Cc---cceeEeeeEEEEEEccCC
Confidence            63   379999999999999875

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.92  E-value=7.6e-25  Score=169.40  Aligned_cols=86  Identities=34%  Similarity=0.601  Sum_probs=78.3

Q ss_pred             CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEeccccccccc
Q 025558           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE   94 (251)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleE   94 (251)
                      .+|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.|     +|
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999998 66999999999995 8999999999999999999999999999 8899 999999888765     35


Q ss_pred             CCCcceeeeeeeEEEEEEec
Q 025558           95 GLLPLETTRHVSMITITLSK  114 (251)
Q Consensus        95 Gld~~~~~R~VS~I~ItLSk  114 (251)
                      |     .+|+||+|+|+|+|
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            5     78999999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=1.1e-24  Score=171.01  Aligned_cols=89  Identities=37%  Similarity=0.552  Sum_probs=79.5

Q ss_pred             CCCCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcC--c-eeeeEEEEEEecccccc
Q 025558           15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAG--L-HQNTSIGSTDITDMWEP   91 (251)
Q Consensus        15 p~~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~G--L-hQ~t~I~sv~i~d~~eP   91 (251)
                      +.++|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+.+  | ||.++|+|.++.|+   
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e---   80 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ---   80 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET---
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC---
Confidence            5578999999998 88999999999995 899999999999999999999999999955  8 89999999998773   


Q ss_pred             cccCCCcceeeeeeeEEEEEEecC
Q 025558           92 LEEGLLPLETTRHVSMITITLSKK  115 (251)
Q Consensus        92 leEGld~~~~~R~VS~I~ItLSk~  115 (251)
                        ||     .+|+||+|+|+|+++
T Consensus        81 --~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           81 --DG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             --TS-----CEEEEEEEEEEEEEC
T ss_pred             --CC-----cEEEeeEEEEEEEcC
Confidence              55     789999999999974

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=1.7e-24  Score=166.86  Aligned_cols=84  Identities=33%  Similarity=0.567  Sum_probs=73.3

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-cCce-eeeEEEEEEecccccccccC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEG   95 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi-~GLh-Q~t~I~sv~i~d~~ePleEG   95 (251)
                      +|+|+|++| ++.+||.+|+.||++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.|+     +|
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence            699999999 888999999999996 6 99999999999999999999999999 7799 9999999998773     45


Q ss_pred             CCcceeeeeeeEEEEEEec
Q 025558           96 LLPLETTRHVSMITITLSK  114 (251)
Q Consensus        96 ld~~~~~R~VS~I~ItLSk  114 (251)
                           .+|+||+|+|+|+|
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 78999999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.88  E-value=2.8e-22  Score=155.72  Aligned_cols=89  Identities=34%  Similarity=0.445  Sum_probs=79.8

Q ss_pred             CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCC
Q 025558           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (251)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGl   96 (251)
                      ++|.|+|++|+- .+||.+|+.||++ ++++|+|||+|+||+|||+|||+||+||..   .+++++++|.++|.+.++| 
T Consensus         3 ~~~vv~vg~Kpv-~~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNKPV-MNYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSSCH-HHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCCcH-HHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence            468999998854 5999999999994 899999999999999999999999999853   5789999999999999998 


Q ss_pred             CcceeeeeeeEEEEEEecC
Q 025558           97 LPLETTRHVSMITITLSKK  115 (251)
Q Consensus        97 d~~~~~R~VS~I~ItLSk~  115 (251)
                          .+|+||+|+|+|+|+
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                899999999999984

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.84  E-value=5.8e-21  Score=147.77  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             CCCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCC
Q 025558           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (251)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGl   96 (251)
                      ++|+|+|+++ ++.+||.+|+.||++ ++++|+|||+|+||+|||+|||+||+||.+++|.   .++++.++     +  
T Consensus         5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i---~~i~i~se-----~--   72 (89)
T 2bky_X            5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQL---VNVQTGSE-----V--   72 (89)
T ss_dssp             CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEE-----E--
T ss_pred             CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEE---EEEEeccc-----c--
Confidence            4677888877 777999999999995 8999999999999999999999999999887664   44444332     1  


Q ss_pred             CcceeeeeeeEEEEEEecC
Q 025558           97 LPLETTRHVSMITITLSKK  115 (251)
Q Consensus        97 d~~~~~R~VS~I~ItLSk~  115 (251)
                         ..+|+||+|+|+|+++
T Consensus        73 ---~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ---RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ---ETTEEEEEEEEEEEEC
T ss_pred             ---CcceEeeeEEEEEEec
Confidence               3789999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.75  E-value=6e-18  Score=138.87  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=71.9

Q ss_pred             CCCCCeEEEcC-CCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccc
Q 025558           15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE   93 (251)
Q Consensus        15 p~~~NeIrVt~-k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePle   93 (251)
                      +.++|+|+|+. +.++.+||.+|+.+|+  ++++|+|||||+||++||+||||||+|+-..++.+.|++.++.++     
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~-----   89 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-----   89 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence            44689999996 3667799999999998  489999999999999999999999999766666777788777554     


Q ss_pred             cCCCcceeeeeeeEEEEEEecCC
Q 025558           94 EGLLPLETTRHVSMITITLSKKD  116 (251)
Q Consensus        94 EGld~~~~~R~VS~I~ItLSk~~  116 (251)
                      ++    ....++|.|+|+|.+.+
T Consensus        90 ~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           90 AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             --------CEEEEEEEEEEEECT
T ss_pred             CC----CcccccceEEEEEEecC
Confidence            11    14456799999999864

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.8e-17  Score=135.39  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=87.1

Q ss_pred             eeccCCCCCCCCC----CCeEEEcCCCchHHHHHHHHHHHhh---cCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceee
Q 025558            5 QRVEKPKAEAPIN----ENEIRITTQGRMRNYITYATTLLQE---KGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN   77 (251)
Q Consensus         5 ~rv~kp~~~~p~~----~NeIrVt~k~~i~~yV~~Al~LL~~---~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~   77 (251)
                      +.+.++-+..|..    +|+|||+++++|.+.|..|.+||++   .+.++|+|||||+||+|||+||..|+++. ++.-.
T Consensus        13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~   91 (140)
T 3iab_B           13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE   91 (140)
T ss_dssp             -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred             CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence            3444443344443    7999999999999999999999985   16899999999999999999999999974 68889


Q ss_pred             eEEEEEEecccccccccC------------CCcceeeeeeeEEEEEEec
Q 025558           78 TSIGSTDITDMWEPLEEG------------LLPLETTRHVSMITITLSK  114 (251)
Q Consensus        78 t~I~sv~i~d~~ePleEG------------ld~~~~~R~VS~I~ItLSk  114 (251)
                      +.++||++.|+++|.++.            .+...++|+||+|||.|+.
T Consensus        92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy~  140 (140)
T 3iab_B           92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIYV  140 (140)
T ss_dssp             EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEEC
T ss_pred             EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEeC
Confidence            999999999999998765            4678999999999999863

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.06  E-value=3.8e-05  Score=64.62  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             eEEEcCCCchHHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHHh----cCceeeeEEEEEEeccccc
Q 025558           20 EIRITTQGRMRNYITYATTLLQE-----KGSNEIVLKAMGRAINKTVMIAELIKRRI----AGLHQNTSIGSTDITDMWE   90 (251)
Q Consensus        20 eIrVt~k~~i~~yV~~Al~LL~~-----~g~~eVvIkg~G~AIsKAV~VAEILKrRi----~GLhQ~t~I~sv~i~d~~e   90 (251)
                      .+.|+++..|+..|+.-.++|+.     ...+.|.|.+.|..|.|+|++.||+|..+    +.|||++++.+......- 
T Consensus        46 ~~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~g-  124 (158)
T 3iab_A           46 YHGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKREG-  124 (158)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC----
T ss_pred             EEEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCcc-
Confidence            34499999999999999998851     14689999999999999999999999987    249999999988654321 


Q ss_pred             ccccCCCcceeeeeeeEEEEEEecCC
Q 025558           91 PLEEGLLPLETTRHVSMITITLSKKD  116 (251)
Q Consensus        91 PleEGld~~~~~R~VS~I~ItLSk~~  116 (251)
                        -..  -++++-+||-+-+.+++++
T Consensus       125 --rNE--Lle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          125 --RNE--LQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             --------CCCCEEEEEEEEEEESSS
T ss_pred             --ccH--HHHhhcCCCEEEEEEeccc
Confidence              111  1456678888888888764

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=91.77  E-value=0.031  Score=44.40  Aligned_cols=8  Identities=13%  Similarity=0.372  Sum_probs=3.9

Q ss_pred             eeeeEEEE
Q 025558          103 RHVSMITI  110 (251)
Q Consensus       103 R~VS~I~I  110 (251)
                      +++..|.|
T Consensus        53 ~~lg~v~I   60 (119)
T 1b34_A           53 VQLETLSI   60 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEcceEEE
Confidence            44555544

>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A

Probab=90.34  E-value=4.9  Score=30.74  Aligned_cols=51  Identities=20%  Similarity=0.410  Sum_probs=37.7

Q ss_pred             CeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHh
Q 025558           19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRI   71 (251)
Q Consensus        19 NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G-~AIsKAV~VAEILKrRi   71 (251)
                      +.+.|+++++-......--.+|.+  ...|.|.++| .|+|.||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l   53 (90)
T 2ek0_A            2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI   53 (90)
T ss_dssp             CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence            468999999985555444446766  4599999999 79999988666555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	3e-34
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	2e-32
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	6e-30
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	2e-26
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	3e-25

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score =  116 bits (292), Expect = 3e-34
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 19  NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNT 78
           N + I  +  M NY+  A TLL + G +EIV+KA GRAI+K V   E+++ R   L    
Sbjct: 2   NVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  SIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
            I    +       ++G         VS I I + KK
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           E+ + +  +  M NY+    T L E G++E+V+KA GRAI++ V +AE+++ R       
Sbjct: 1   EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             +    I       E+G        +VS I I L+K
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  105 bits (263), Expect = 6e-30
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           +N + I  +  M NY+    T L     +E+++KA G+AINK V +AE+I+ R     ++
Sbjct: 2   DNVVLIGKKPVM-NYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             I   +I        +G        +VS I I L+K
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.5 bits (240), Expect = 2e-26
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 18  ENEIRITTQGR-MRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQ 76
           +N I+++   + +  Y+  A   +Q+   N++ L A+G AI   V + E++K     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  NTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKD 116
                  DI D                  + I ITL K +
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEITLVKSE 90

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 93.2 bits (232), Expect = 3e-25
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
            NEI +     + +++     L  + G +E++LK  GR I+K V +   +K R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQL 60

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
            ++ +          E         R +S I + L + 
Sbjct: 61  VNVQTGS--------EVR-----DRRRISYILLRLKRV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.93
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.91
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.89
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.84
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.77

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.93  E-value=4.2e-26  Score=174.71  Aligned_cols=89  Identities=36%  Similarity=0.500  Sum_probs=84.4

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCCC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGld   97 (251)
                      .|+|+|++|+.| +||.+|+.||++ +.++|+|||+|+||+|||+|||+||+||  |||.++|++++|.++|+|.+||  
T Consensus         1 ~n~I~IG~Kp~m-nYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCCcHH-HHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            489999999866 999999999986 7999999999999999999999999998  9999999999999999999999  


Q ss_pred             cceeeeeeeEEEEEEecC
Q 025558           98 PLETTRHVSMITITLSKK  115 (251)
Q Consensus        98 ~~~~~R~VS~I~ItLSk~  115 (251)
                         ++|+||+|+|+|+|+
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               789999999999985

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=5.7e-25  Score=167.79  Aligned_cols=87  Identities=33%  Similarity=0.497  Sum_probs=81.9

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCCC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGld   97 (251)
                      +|+|+|++|+.| +||.+|+.+|++ +.++|+|||+|+||++||+|||+||+|   |||.++|++++|.++|+|.+||  
T Consensus         1 en~I~Ig~Kp~~-~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r---~~~~~~i~~i~i~se~~~~e~g--   73 (87)
T d1nfja_           1 EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPGVKVKEIKIDTEELESEQG--   73 (87)
T ss_dssp             CEEEECCSSCHH-HHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHH---TCTTCEEEEEEEEEEECCCBTT--
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHh---ccCCcEEEEEEEccEEEecCCC--
Confidence            699999999765 999999999986 799999999999999999999999999   5788999999999999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 025558           98 PLETTRHVSMITITLSK  114 (251)
Q Consensus        98 ~~~~~R~VS~I~ItLSk  114 (251)
                         ++|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~K   87 (87)
T d1nfja_          74 ---RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ---BCCEEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               78999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=1.3e-23  Score=160.20  Aligned_cols=86  Identities=34%  Similarity=0.433  Sum_probs=72.3

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCCC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGld   97 (251)
                      +|+|+|++|+.| +||.+|+.+|++ + ++|+|||+|+||++||+|||+||+||...|   +|.+++|.++|+|.+||  
T Consensus         2 en~I~Ig~KP~m-~YV~~~~~~~~~-~-~eV~lKArG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKKPVM-NYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSSCHH-HHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC--------
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHhcc-C-CeEEEEEcchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC--
Confidence            699999999777 999999999997 4 899999999999999999999999976655   57888899999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 025558           98 PLETTRHVSMITITLSK  114 (251)
Q Consensus        98 ~~~~~R~VS~I~ItLSk  114 (251)
                         ++|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               78999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.84  E-value=3.5e-21  Score=146.24  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=73.6

Q ss_pred             CCeEEEcCCCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccCCC
Q 025558           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (251)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEGld   97 (251)
                      .|+|+|+.+.++.|||.+|+.||++ +.++|+|||+|+||+|||+|||+||+||.++||+++|+   +.++     +   
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~---i~sE-----~---   69 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----V---   69 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----E---
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEE---eccc-----c---
Confidence            5999999999999999999999986 89999999999999999999999999998888765544   4433     2   


Q ss_pred             cceeeeeeeEEEEEEecC
Q 025558           98 PLETTRHVSMITITLSKK  115 (251)
Q Consensus        98 ~~~~~R~VS~I~ItLSk~  115 (251)
                        ...|+||+|+|+|.+.
T Consensus        70 --~~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          70 --RDRRRISYILLRLKRV   85 (86)
T ss_dssp             --ETTEEEEEEEEEEEEC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              3678999999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=6.3e-19  Score=136.87  Aligned_cols=91  Identities=26%  Similarity=0.407  Sum_probs=76.7

Q ss_pred             CCCeEEEcC-CCchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhcCceeeeEEEEEEecccccccccC
Q 025558           17 NENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG   95 (251)
Q Consensus        17 ~~NeIrVt~-k~~i~~yV~~Al~LL~~~g~~eVvIkg~G~AIsKAV~VAEILKrRi~GLhQ~t~I~sv~i~d~~ePleEG   95 (251)
                      .+|+|+|++ |.++.+||.+|+.+|++  .++|+|+|+|+||++||+|||+||++...+|+.++|++.++.++.    ++
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~--~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~----~g   74 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDA----RG   74 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHH--HSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhcc--CCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCC----CC
Confidence            379999997 56688999999999987  489999999999999999999999998889999999999887552    22


Q ss_pred             CCcceeeeeeeEEEEEEecCC-CC
Q 025558           96 LLPLETTRHVSMITITLSKKD-LD  118 (251)
Q Consensus        96 ld~~~~~R~VS~I~ItLSk~~-lD  118 (251)
                           .+++||.|+|.|.+.+ +|
T Consensus        75 -----r~~~vs~IEI~L~K~~~F~   93 (99)
T d1vm0a_          75 -----RPVQKAKIEITLVKSEKFD   93 (99)
T ss_dssp             ------CEEEEEEEEEEEECTTHH
T ss_pred             -----cccccceEEEEEeeCccHH
Confidence                 6799999999999874 44