Citrus Sinensis ID: 025578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSVRFFFFDYIFIF
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccEEEEccccccccccHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHccccccccccccccccccccccccEEEEEEEccccEEEEcccccHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHccccHccEEEEccccccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEccccccccEEcHHHHHHHHcccccccEEEEEEEccccccEEcccEEEEcccEEcccccccHHHHccccccEEEEEEEccccccccccHHHHHHEEEEEEc
mqicprgnfgcnimkkirndeispnkrslntkpfslsssssrpsrraVLCGvsynkgkfrlkgtinDVRNMRDLLINSFKFQEEGIIVlteeekdemysptKKNIQKALEWLVNdcrkgdslvfyfsghglrqpdfnndetdgfdeticpvdflkegmiidndinsiivkplkegvTLHAIVDACHSGTILDLEYVYNKYQmtwednrppsgarkatdgGLAICLSAcqdnqlasdtsvrfffFDYIFIF
mqicprgnfgcnimkkirndeispnkrslntkpfslsssssrpsrravlcgvsynkgkfrlkgtindvrNMRDLLINSFKFQEEGIIVLteeekdemyspTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSVRFFFFDYIFIF
MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFslsssssrpsrrAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSVRffffdyifif
********FGCNIM********************************AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEE**********KNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWE************DGGLAICLSACQDNQLASDTSVRFFFFDYIFI*
**********************************************AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDL**************************GLAICLSACQDNQLASDTSVRFFFFDYIFIF
MQICPRGNFGCNIMKKIRNDEISPNKRSLNT**************RAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNR*********DGGLAICLSACQDNQLASDTSVRFFFFDYIFIF
******GNFGCN*******************KPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSVRFFFFDYIFIF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSVRFFFFDYIFIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
Q7XJE6367 Metacaspase-1 OS=Arabidop yes no 0.836 0.569 0.528 5e-62
Q7XJE5418 Metacaspase-2 OS=Arabidop no no 0.852 0.509 0.469 2e-54
Q9FMG1362 Metacaspase-3 OS=Arabidop no no 0.776 0.535 0.494 1e-50
A7F075432 Metacaspase-1 OS=Scleroti N/A no 0.816 0.472 0.414 2e-43
A6SDT7431 Metacaspase-1 OS=Botryoti N/A no 0.78 0.452 0.422 4e-43
Q7S4N5 441 Metacaspase-1B OS=Neurosp N/A no 0.724 0.410 0.437 3e-42
Q4WJA1413 Metacaspase-1A OS=Neosart yes no 0.748 0.452 0.424 4e-42
B0XPP3413 Metacaspase-1A OS=Neosart N/A no 0.748 0.452 0.424 4e-42
A1D3V4435 Metacaspase-1A OS=Neosart N/A no 0.748 0.429 0.424 5e-42
A1CQZ0429 Metacaspase-1A OS=Aspergi N/A no 0.78 0.454 0.415 8e-42
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 150/214 (70%), Gaps = 5/214 (2%)

Query: 29  LNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIV 88
           ++  P  L     R  +RAV+CG+SY   +  LKG IND + MR LLIN FKF  + I++
Sbjct: 66  IHAPPGQLPHPHGR--KRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILM 123

Query: 89  LTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETI 148
           LTEEE D    PTK+N++ AL WLV  C  GDSLVF++SGHG RQ ++N DE DG+DET+
Sbjct: 124 LTEEETDPYRIPTKQNMRMALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETL 183

Query: 149 CPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYV--YNKY-QMTWE 205
           CP+DF  +GMI+D++IN+ IV+PL  GV LH+I+DACHSGT+LDL ++   N+  Q  WE
Sbjct: 184 CPLDFETQGMIVDDEINATIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWE 243

Query: 206 DNRPPSGARKATDGGLAICLSACQDNQLASDTSV 239
           D+RP SG  K T GG AI +S C D+Q ++DTS 
Sbjct: 244 DHRPRSGLWKGTAGGEAISISGCDDDQTSADTSA 277
Cysteine protease that cleaves specifically after arginine or lysine residues. Does not cleave caspase-specific substrates. Acts as a positive regulator of cell death. Required for both oxidative stress cell death response and hypersensitive cell death response mediated by immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMG1|MCA3_ARATH Metacaspase-3 OS=Arabidopsis thaliana GN=AMC3 PE=2 SV=1 Back     alignment and function description
>sp|A7F075|MCA1_SCLS1 Metacaspase-1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=casA PE=3 SV=1 Back     alignment and function description
>sp|A6SDT7|MCA1_BOTFB Metacaspase-1 OS=Botryotinia fuckeliana (strain B05.10) GN=casA PE=3 SV=1 Back     alignment and function description
>sp|Q7S4N5|MCA1B_NEUCR Metacaspase-1B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mca-2 PE=3 SV=1 Back     alignment and function description
>sp|Q4WJA1|MCA1A_ASPFU Metacaspase-1A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=casA PE=3 SV=3 Back     alignment and function description
>sp|B0XPP3|MCA1A_ASPFC Metacaspase-1A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=casA PE=3 SV=2 Back     alignment and function description
>sp|A1D3V4|MCA1A_NEOFI Metacaspase-1A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=casA PE=3 SV=2 Back     alignment and function description
>sp|A1CQZ0|MCA1A_ASPCL Metacaspase-1A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=casA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
255569786 362 caspase, putative [Ricinus communis] gi| 0.888 0.613 0.621 1e-78
356528042 412 PREDICTED: metacaspase-1-like [Glycine m 0.804 0.487 0.694 2e-77
449438201 363 PREDICTED: metacaspase-1-like [Cucumis s 0.888 0.611 0.617 3e-76
224140789337 predicted protein [Populus trichocarpa] 0.88 0.652 0.659 7e-76
357476325 390 Metacaspase-1 [Medicago truncatula] gi|3 0.812 0.520 0.687 2e-75
225465738 433 PREDICTED: metacaspase-1 [Vitis vinifera 0.872 0.503 0.592 1e-71
296087465 358 unnamed protein product [Vitis vinifera] 0.872 0.608 0.592 1e-71
255569792287 caspase, putative [Ricinus communis] gi| 0.872 0.759 0.584 2e-71
224140793228 predicted protein [Populus trichocarpa] 0.756 0.828 0.688 2e-69
363807170285 uncharacterized protein LOC100796278 [Gl 0.784 0.687 0.633 1e-66
>gi|255569786|ref|XP_002525857.1| caspase, putative [Ricinus communis] gi|223534862|gb|EEF36551.1| caspase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 172/222 (77%)

Query: 18  RNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLIN 77
           R+D   P   + N  P      S    +RA+L G++Y K K +LKGT+NDV+NMR LLI 
Sbjct: 77  RSDNDKPKSMNCNPSPLMPRMRSITSRKRALLIGITYTKWKHKLKGTVNDVKNMRKLLIE 136

Query: 78  SFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFN 137
           ++ FQ+E I+VLTEEE    ++PTKKNIQK+L WLV  C+ GDSLVFYFSGHGLRQPDFN
Sbjct: 137 TYGFQKENILVLTEEETGPEFAPTKKNIQKSLNWLVEGCQAGDSLVFYFSGHGLRQPDFN 196

Query: 138 NDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY 197
           +DE DG+DETICP DFL+EGMI+DNDINS IV PL +GVTLH+IVDACHSGTILDL ++Y
Sbjct: 197 DDELDGYDETICPADFLEEGMILDNDINSTIVWPLPKGVTLHSIVDACHSGTILDLVHIY 256

Query: 198 NKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV 239
           ++ +  W DN PP+G RK TDGGLAI +SAC+DNQ+A+DT+ 
Sbjct: 257 DREKKKWRDNSPPNGTRKHTDGGLAISISACEDNQMAADTTA 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356528042|ref|XP_003532614.1| PREDICTED: metacaspase-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449438201|ref|XP_004136878.1| PREDICTED: metacaspase-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224140789|ref|XP_002323761.1| predicted protein [Populus trichocarpa] gi|222866763|gb|EEF03894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357476325|ref|XP_003608448.1| Metacaspase-1 [Medicago truncatula] gi|355509503|gb|AES90645.1| Metacaspase-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225465738|ref|XP_002264984.1| PREDICTED: metacaspase-1 [Vitis vinifera] gi|147772679|emb|CAN64935.1| hypothetical protein VITISV_021552 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087465|emb|CBI34054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569792|ref|XP_002525860.1| caspase, putative [Ricinus communis] gi|223534865|gb|EEF36554.1| caspase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224140793|ref|XP_002323763.1| predicted protein [Populus trichocarpa] gi|222866765|gb|EEF03896.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807170|ref|NP_001242347.1| uncharacterized protein LOC100796278 [Glycine max] gi|255635503|gb|ACU18103.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2204798367 MC1 "metacaspase 1" [Arabidops 0.768 0.523 0.558 5.9e-57
TAIR|locus:2117288418 MC2 "metacaspase 2" [Arabidops 0.764 0.456 0.525 2.8e-50
TAIR|locus:2173398362 MC3 "metacaspase 3" [Arabidops 0.764 0.527 0.507 4.7e-48
POMBASE|SPCC1840.04425 pca1 "metacaspase Pca1" [Schiz 0.704 0.414 0.380 8.2e-37
UNIPROTKB|A4QTY2396 MCA1 "Metacaspase-1" [Magnapor 0.644 0.406 0.447 1.5e-35
SGD|S000005723432 MCA1 "Ca2+-dependent cysteine 0.644 0.372 0.422 4e-35
ASPGD|ASPL0000043471420 AN2503 [Emericella nidulans (t 0.644 0.383 0.440 6.5e-35
CGD|CAL0003470448 MCA1 [Candida albicans (taxid: 0.64 0.357 0.415 5.6e-34
UNIPROTKB|Q5ANA8448 MCA1 "Metacaspase-1" [Candida 0.64 0.357 0.415 5.6e-34
TAIR|locus:2207350 418 MC4 "metacaspase 4" [Arabidops 0.564 0.337 0.401 1.1e-24
TAIR|locus:2204798 MC1 "metacaspase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 109/195 (55%), Positives = 143/195 (73%)

Query:    47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQ 106
             AV+CG+SY   +  LKG IND + MR LLIN FKF  + I++LTEEE D    PTK+N++
Sbjct:    82 AVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTEEETDPYRIPTKQNMR 141

Query:   107 KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINS 166
              AL WLV  C  GDSLVF++SGHG RQ ++N DE DG+DET+CP+DF  +GMI+D++IN+
Sbjct:   142 MALYWLVQGCTAGDSLVFHYSGHGSRQRNYNGDEVDGYDETLCPLDFETQGMIVDDEINA 201

Query:   167 IIVKPLKEGVTLHAIVDACHSGTILDLEYV--YNKY-QMTWEDNRPPSGARKATDGGLAI 223
              IV+PL  GV LH+I+DACHSGT+LDL ++   N+  Q  WED+RP SG  K T GG AI
Sbjct:   202 TIVRPLPHGVKLHSIIDACHSGTVLDLPFLCRMNRAGQYVWEDHRPRSGLWKGTAGGEAI 261

Query:   224 CLSACQDNQLASDTS 238
              +S C D+Q ++DTS
Sbjct:   262 SISGCDDDQTSADTS 276
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA
GO:0043068 "positive regulation of programmed cell death" evidence=IGI;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2117288 MC2 "metacaspase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173398 MC3 "metacaspase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC1840.04 pca1 "metacaspase Pca1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|A4QTY2 MCA1 "Metacaspase-1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000005723 MCA1 "Ca2+-dependent cysteine protease" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000043471 AN2503 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0003470 MCA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANA8 MCA1 "Metacaspase-1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TAIR|locus:2207350 MC4 "metacaspase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.410.1
hypothetical protein (274 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
pfam00656228 pfam00656, Peptidase_C14, Caspase domain 4e-33
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain Back     alignment and domain information 
 Score =  119 bits (301), Expect = 4e-33
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 27/198 (13%)

Query: 45  RRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKN 104
             A++ G +Y      L+G  ND   +  LL     F+ E                T + 
Sbjct: 1   GLALIIGNNYFGHAAPLRGCDNDAEALAKLL-QRLGFEVEVF-----------DDLTAEE 48

Query: 105 IQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDI 164
           I++AL         GDS V  +SGHG++   +      G D  + PVD       +D+  
Sbjct: 49  IRRALREFAARADPGDSFVVVYSGHGVQGEVY------GGDGYLVPVDA------LDDVF 96

Query: 165 NSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLA-- 222
           N +    LK    L  I+DAC  G + D     +      E       A  +     A  
Sbjct: 97  NGLNCPSLKGKPKL-FIIDACRGGPLDDGVKSDSGSSGESESVDDSEAAGLSKIPAPADF 155

Query: 223 ICLSACQDNQLASDTSVR 240
           +   +    Q++   +  
Sbjct: 156 LVAYSTTPGQVSYRGTGS 173

Length = 228

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
KOG1546362 consensus Metacaspase involved in regulation of ap 100.0
PF00656248 Peptidase_C14: Caspase domain; InterPro: IPR011600 99.97
cd00032243 CASc Caspase, interleukin-1 beta converting enzyme 99.75
smart00115241 CASc Caspase, interleukin-1 beta converting enzyme 99.72
COG4249 380 Uncharacterized protein containing caspase domain 99.56
PF01650256 Peptidase_C13: Peptidase C13 family; InterPro: IPR 99.54
KOG1348 477 consensus Asparaginyl peptidases [Posttranslationa 98.69
KOG1349309 consensus Gpi-anchor transamidase [Posttranslation 98.63
PF14538154 Raptor_N: Raptor N-terminal CASPase like domain 98.41
COG5206 382 GPI8 Glycosylphosphatidylinositol transamidase (GP 98.2
PF12770287 CHAT: CHAT domain 97.3
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.86
COG4249 380 Uncharacterized protein containing caspase domain 96.82
COG4995420 Uncharacterized protein conserved in bacteria [Fun 85.75
COG2379 422 GckA Putative glycerate kinase [Carbohydrate trans 82.42
PF12070513 DUF3550: Protein of unknown function (DUF3550/UPF0 81.15
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-42  Score=304.36  Aligned_cols=211  Identities=44%  Similarity=0.735  Sum_probs=177.7

Q ss_pred             CCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC
Q 025578           39 SSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK  118 (250)
Q Consensus        39 ~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~  118 (250)
                      +...++|+||||||||.++..+|+||+|||..|+++|.++|||+.++|.+|+|.+++....||++||+++|.||++.+++
T Consensus        58 ~~~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq~  137 (362)
T KOG1546|consen   58 PQMAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQP  137 (362)
T ss_pred             ccccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCCC
Confidence            33457888999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhhhc
Q 025578          119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN  198 (250)
Q Consensus       119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~~~  198 (250)
                      ||.+||+|||||.+.++.+++|.+||||+|+|.|++.+|.|.++|+.+.|++++++++++++|+|+||||+..|.+++.+
T Consensus       138 gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSGgliDlp~i~~  217 (362)
T KOG1546|consen  138 GDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHSGGLIDLPEIER  217 (362)
T ss_pred             CCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccCCCcccchhhee
Confidence            99999999999999999999999999999999999999989889999999999999999999999999999999887654


Q ss_pred             ccc------ccccc-----------------------------CCC--CCcc------cccCCCCCEEEEeeeCCCCeee
Q 025578          199 KYQ------MTWED-----------------------------NRP--PSGA------RKATDGGLAICLSACQDNQLAS  235 (250)
Q Consensus       199 ~~~------~~~~~-----------------------------~~~--~~~~------~~~~~~g~~v~lsAc~~~Q~A~  235 (250)
                      ..+      --|++                             ...  +...      ....+....|+||.|+.+|+|.
T Consensus       218 ~~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~~~~~~~~~~~~d~~illSgcqadqtSa  297 (362)
T KOG1546|consen  218 TKGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTIGDLGRQLKDSHDNGILLSGCQADQTSA  297 (362)
T ss_pred             cccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcchhhhhhhcccCCCCceEEeccccccccc
Confidence            331      00100                             000  0000      0001123368899999999999


Q ss_pred             ccC--CC--chhhhhhhh
Q 025578          236 DTS--VR--FFFFDYIFI  249 (250)
Q Consensus       236 E~~--~~--G~FT~aL~~  249 (250)
                      +..  ++  |.|++|+.+
T Consensus       298 d~~~~G~~~gAms~Aiq~  315 (362)
T KOG1546|consen  298 DASTYGHLYGAMSNAIQE  315 (362)
T ss_pred             ccccCCcchhHHHHHHHH
Confidence            876  33  999998753

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) Back     alignment and domain information
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain Back     alignment and domain information
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12770 CHAT: CHAT domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only] Back     alignment and domain information
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
4f6o_A350 Crystal Structure Of The Yeast Metacaspase Yca1 Len 2e-33
4afr_A367 The Structure Of Metacaspase 2 (C213a Mutant) From 6e-23
4afp_A367 The Structure Of Metacaspase 2 From T. Brucei Deter 1e-22
4af8_A367 The Structural Basis For Metacaspase Substrate Spec 1e-22
3bij_A285 Crystal Structure Of Protein Gsu0716 From Geobacter 1e-10
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1 Length = 350 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 47  AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQ 106
           A++ G++Y   K +L+G IND  N+ + L N + +  + I++LT+++ D +  PT+ N+ 
Sbjct: 56  ALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMI 115
Query: 107 KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINS 166
           +A++WLV D +  DSL  ++SGHG +  D + DE DG D+ I PVDF  +G IID++++ 
Sbjct: 116 RAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHD 175
Query: 167 IIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLS 226
           I+VKPL++GV L A+ D+CHSGT+LDL Y Y+   +  E    P+  +     GL   +S
Sbjct: 176 IMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKE----PNIWKDVGQDGLQAAIS 231
Query: 227 ACQDNQLA 234
               N+ A
Sbjct: 232 YATGNRAA 239
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T. Brucei Length = 367 Back     alignment and structure
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined In The Presence Of Samarium Length = 367 Back     alignment and structure
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity And Activation Length = 367 Back     alignment and structure
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter Sulfurreducens. Northeast Structural Genomics Target Gsr13 Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 2e-54
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 6e-53
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 2e-42
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350 Back     alignment and structure
 Score =  178 bits (451), Expect = 2e-54
 Identities = 72/194 (37%), Positives = 117/194 (60%), Gaps = 5/194 (2%)

Query: 23  SPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQ 82
            P  +++         S     R+A++ G++Y   K +L+G IND  N+ + L N + + 
Sbjct: 32  PPQTQTIQGTDQPYQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYS 91

Query: 83  EEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETD 142
            + I++LT+++ D +  PT+ N+ +A++WLV D +  DSL  ++SGHG +  D + DE D
Sbjct: 92  SDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEED 151

Query: 143 GFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN---- 198
           G D+ I PVDF  +G IID++++ I+VKPL++GV L A+ D+CHSGT+LDL Y Y+    
Sbjct: 152 GMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGI 211

Query: 199 -KYQMTWEDNRPPS 211
            K    W+D     
Sbjct: 212 IKEPNIWKDVGQDG 225
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Length = 367 Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Length = 285 Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 100.0
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 100.0
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 100.0
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 99.94
3e4c_A302 Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna 99.79
2h54_A178 Caspase-1; allosteric site, dimer interface, hydro 99.69
1m72_A272 Caspase-1; caspase, cysteine protease, hydrolase-h 99.66
2nn3_C310 Caspase-1; cysteine protease, hydrolase; 3.00A {Sp 99.65
1f1j_A305 Caspase-7 protease; caspase-7, cysteine protease, 99.63
2j32_A250 Caspase-3; Pro-caspase3, thiol protease, hydrolase 99.63
4ehd_A277 Caspase-3; caspase, apoptosis, allosteric inhibiti 99.61
3sir_A259 Caspase; hydrolase; 2.68A {Drosophila melanogaster 99.61
3od5_A278 Caspase-6; caspase domain, apoptotic protease, hyd 99.58
3h11_B271 Caspase-8; cell death, apoptosis, caspase, alterna 99.56
1nw9_B277 Caspase 9, apoptosis-related cysteine protease; XI 99.55
2fp3_A316 Caspase NC; apoptosis, initiator caspase activatio 99.54
1pyo_A167 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 99.18
2dko_A146 Caspase-3; low barrier hydrogen bond, caspase, dru 99.0
1qtn_A164 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 98.93
3p45_A179 Caspase-6; protease, huntington'S disease, physio 98.81
3h11_A272 CAsp8 and FADD-like apoptosis regulator; cell deat 98.79
2ql9_A173 Caspase-7; cysteine protease, apoptosis, thiol pro 98.78
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.2e-45  Score=334.22  Aligned_cols=212  Identities=36%  Similarity=0.661  Sum_probs=158.6

Q ss_pred             CCCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC
Q 025578           38 SSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR  117 (250)
Q Consensus        38 ~~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~  117 (250)
                      .+++.++++||+|||||++...+|++|+|||++|+++|++.+||++++|++|+|.+.++...||+++|+++|+||+++++
T Consensus        47 ~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~  126 (350)
T 4f6o_A           47 YSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ  126 (350)
T ss_dssp             CCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred             cCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence            35567899999999998877889999999999999999988999999999999986545556899999999999999999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhhh
Q 025578          118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY  197 (250)
Q Consensus       118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~~  197 (250)
                      ++|++||||||||.+..+..|+|.+|+|++|+|+|+...+.|.++||.++|.+.+++++++++|+||||||++++.++.+
T Consensus       127 pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~~  206 (350)
T 4f6o_A          127 PNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTY  206 (350)
T ss_dssp             TTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEEE
T ss_pred             CCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccccc
Confidence            99999999999999998888888999999999999887788999999999988888899999999999999999988765


Q ss_pred             ccccc-----ccccCCC--------------------CCc------------------ccccCCCCCEEEEeeeCCCCee
Q 025578          198 NKYQM-----TWEDNRP--------------------PSG------------------ARKATDGGLAICLSACQDNQLA  234 (250)
Q Consensus       198 ~~~~~-----~~~~~~~--------------------~~~------------------~~~~~~~g~~v~lsAc~~~Q~A  234 (250)
                      +..+.     .|.....                    ..+                  .....+++.+|+||+|+++|+|
T Consensus       207 ~~~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD~QtS  286 (350)
T 4f6o_A          207 STKGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTS  286 (350)
T ss_dssp             ETTEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-----
T ss_pred             ccccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCCCCch
Confidence            43221     1111000                    000                  0012446789999999999999


Q ss_pred             eccC----CCchhhhhhhh
Q 025578          235 SDTS----VRFFFFDYIFI  249 (250)
Q Consensus       235 ~E~~----~~G~FT~aL~~  249 (250)
                      .|..    .+|.||++|++
T Consensus       287 aD~~~~g~~~GAmTyafi~  305 (350)
T 4f6o_A          287 ADAVEDGQNTGAMSHAFIK  305 (350)
T ss_dssp             --------CCCHHHHHHHH
T ss_pred             hhhccCCceeehhHHHHHH
Confidence            9976    25999999985
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Back     alignment and structure
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Back     alignment and structure
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Back     alignment and structure
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Back     alignment and structure
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Back     alignment and structure
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Back     alignment and structure
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Back     alignment and structure
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Back     alignment and structure
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Back     alignment and structure
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Back     alignment and structure
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Back     alignment and structure
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Back     alignment and structure
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Back     alignment and structure
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Back     alignment and structure
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Back     alignment and structure
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Back     alignment and structure
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Back     alignment and structure
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens} Back     alignment and structure
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Back     alignment and structure
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1nw9b_277 c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [Tax 2e-06
g1sc3.1261 c.17.1.1 (A:,B:) Interleukin-1beta converting enzy 7e-06
d1m72a_256 c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera 0.003
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 19/130 (14%)

Query: 62  KGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDS 121
            G+  D   +R    +S  F    + V  +    +M       +   LE    D    D 
Sbjct: 42  TGSNIDCEKLRRRF-SSLHFM---VEVKGDLTAKKM-------VLALLELARQDHGALDC 90

Query: 122 LVFYFSGHGLRQPDFN-NDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHA 180
            V     HG +           G D     V+ +       +        P   G     
Sbjct: 91  CVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC-------PSLGGKPKLF 143

Query: 181 IVDACHSGTI 190
            + AC     
Sbjct: 144 FIQACGGEQK 153
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
g1sc3.1261 Interleukin-1beta converting enzyme (a cysteine pr 99.87
d1nw9b_277 Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} 99.83
g1qtn.1242 Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} 99.79
g1pyo.1257 Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1m72a_256 Caspase-1 {Fall armyworm (Spodoptera frugiperda) [ 99.71
g1nme.1238 Apopain (caspase-3, cpp32) {Human (Homo sapiens) [ 99.7
d1f1ja_245 Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} 99.64
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Back     information, alignment and structure
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure