Citrus Sinensis ID: 025586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Secondary Structure (PSIPRED)
cccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEHccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHccccccccHcccccHHHHHHHHcccccccccHHHHHHcccccccHEEEccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mavatatflvlqpsfsspfavtpsskltfpnyssprrriglsTVACTYVAlsskgqgafdpeLRSVLELATDSELYELERilfgpsyfspllksftkradvdYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKnlnipcssklstEDLEAEIFLHLLQEYaseesgvfpgswenseasdaqnsLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Flexible Loop (DISEMBL)
MAVATATFlvlqpsfsspfavtpsskLTFPNYSSPRRRIGLSTVACTYVALsskgqgafdpELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADArstlrgwrPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Low Complexity Region (SEG)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Disordered region (IsUnstruct)
*****ATFLVLQP*F*************F******RRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*********************LELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGEL***
Disordered Region (DISOPRED)
******T*LVLQPSFSSPFAVTPSSKLT**********************************LRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY******************************************AVELKSMMLKGGGIYTLVKIYQLVGELLSV
Disordered Region (DISEMBL)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Disordered Region (DISPRO)
*AVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVAL**KGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEA*DAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
359495113	346	PREDICTED: uncharacterized protein LOC10	0.888	0.641	0.722	1e-88
359495111	354	PREDICTED: uncharacterized protein LOC10	0.888	0.627	0.722	2e-88
18410364	351	uncharacterized protein [Arabidopsis tha	0.96	0.683	0.614	3e-76
334183893	357	uncharacterized protein [Arabidopsis tha	0.96	0.672	0.614	3e-76
224125914	355	predicted protein [Populus trichocarpa]	0.852	0.6	0.680	6e-76
27754453	350	unknown protein [Arabidopsis thaliana]	0.884	0.631	0.641	7e-76
255573521	372	conserved hypothetical protein [Ricinus	0.848	0.569	0.663	5e-74
449439491	343	PREDICTED: uncharacterized protein LOC10	0.932	0.679	0.602	7e-74
297839209	351	hypothetical protein ARALYDRAFT_895206 [	0.96	0.683	0.601	4e-73
11120789	351	unknown protein [Arabidopsis thaliana]	0.948	0.675	0.594	2e-70

>gi|359495113|ref|XP_003634913.1| PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 5/227 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS 249
           E GLSQWKVQA+AA  AGA EL+S++LKGG + TL KIY L+   LS
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLS 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495111|ref|XP_002263023.2| PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera] gi|296088813|emb|CBI38263.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 186/227 (81%), Gaps = 5/227 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS 249
           E GLSQWKVQA+AA  AGA EL+S++LKGG + TL KIY L+   LS
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLS 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410364|ref|NP_565065.1| uncharacterized protein [Arabidopsis thaliana] gi|21593462|gb|AAM65429.1| unknown [Arabidopsis thaliana] gi|124301178|gb|ABN04841.1| At1g73470 [Arabidopsis thaliana] gi|332197343|gb|AEE35464.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 179/241 (74%), Gaps = 1/241 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELL 248
            WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+ T  K+YQL+ + L
Sbjct: 188 MWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLAKKL 247

Query: 249 S 249
           S
Sbjct: 248 S 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183893|ref|NP_001185391.1| uncharacterized protein [Arabidopsis thaliana] gi|332197345|gb|AEE35466.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 179/241 (74%), Gaps = 1/241 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELL 248
            WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+ T  K+YQL+ + L
Sbjct: 188 MWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLAKKL 247

Query: 249 S 249
           S
Sbjct: 248 S 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125914|ref|XP_002329748.1| predicted protein [Populus trichocarpa] gi|222870656|gb|EEF07787.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 177/216 (81%), Gaps = 3/216 (1%)

Query: 37  RRIGLSTVACT-YVALSSKGQ-GAFDPELRSVLELATDSELYELERILFGPSYFSPLLKS 94
           + I  S + C+ + + S K Q G FD +LRSVLELATDSELYELE ILFGPS+FSPLLKS
Sbjct: 35  KNILYSPLRCSSHASFSPKSQDGPFDRDLRSVLELATDSELYELENILFGPSHFSPLLKS 94

Query: 95  F-TKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153
             +KRA++DY M++QD+EERED I+ LESRF FLAADARSTLRGWRP+YRNVLL VRK L
Sbjct: 95  IASKRAEIDYAMMDQDMEEREDMISCLESRFFFLAADARSTLRGWRPTYRNVLLTVRKKL 154

Query: 154 NIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQA 213
           +I CSSKLSTEDLEAEIFLHLL+EYASE+SG FPG WE S+ SD Q SL +GLSQ KVQA
Sbjct: 155 SIGCSSKLSTEDLEAEIFLHLLEEYASEQSGTFPGLWELSKTSDDQGSLGIGLSQEKVQA 214

Query: 214 LAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS 249
           LAA   GA +L+S++LKGGG++TL +IYQ + + L+
Sbjct: 215 LAAQKLGAADLQSIILKGGGVFTLTRIYQWLAKKLT 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754453|gb|AAO22674.1| unknown protein [Arabidopsis thaliana]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 172/223 (77%), Gaps = 2/223 (0%)

Query: 27  LTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPS 86
           L  P     R+++G +  +    A  S  +  +DPELR V ELATDSELYELE+ILFGPS
Sbjct: 27  LKIPRTGWRRKQLGFALASTA--ASESPSEATYDPELRLVFELATDSELYELEKILFGPS 84

Query: 87  YFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146
           YFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVL
Sbjct: 85  YFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVL 144

Query: 147 LAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGL 206
           LAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGL
Sbjct: 145 LAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGL 204

Query: 207 SQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS 249
           S+WKV+ LAA   GA E++SM+LKGGG+ T  K+YQL+ + LS
Sbjct: 205 SKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLAKKLS 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573521|ref|XP_002527685.1| conserved hypothetical protein [Ricinus communis] gi|223532916|gb|EEF34684.1| conserved hypothetical protein [Ricinus communis]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 165/217 (76%), Gaps = 5/217 (2%)

Query: 34  SPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLK 93
           S  ++  L  + C++ A+S    G  D ELRSVLELATDSELYELERILFGPSYFSPLLK
Sbjct: 56  SSDKKKSLGIIRCSHAAVS----GTLDRELRSVLELATDSELYELERILFGPSYFSPLLK 111

Query: 94  SFTKRA-DVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKN 152
           S T    DV+Y   E D+ ERE FIA+LESRFL+LAADARSTLRGWRPSYRNVLLAVRK 
Sbjct: 112 SITGNGVDVEYSTFEDDMAEREAFIAALESRFLYLAADARSTLRGWRPSYRNVLLAVRKK 171

Query: 153 LNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQ 212
           LNIPCS KL TEDLEAEIFLHLLQ++ SEESG  PG WE SE    Q SLE+GL QW  Q
Sbjct: 172 LNIPCSRKLPTEDLEAEIFLHLLQDHPSEESGTVPGLWEFSEVPSDQGSLEIGLRQWNGQ 231

Query: 213 ALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELLS 249
           A+AA   G  EL+S++LKGGG++TL + YQL+   LS
Sbjct: 232 AIAAIKLGLAELQSVILKGGGVFTLSRFYQLLARKLS 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439491|ref|XP_004137519.1| PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus] gi|449517717|ref|XP_004165891.1| PREDICTED: uncharacterized protein LOC101226231 [Cucumis sativus]

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 16/249 (6%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFD 60
           MA A A    LQ +F SP A   S K+ +P +SS  RR G+  V C   +     QG FD
Sbjct: 1   MATALA---ALQFAFLSPAA---SKKIAYPFFSSSGRRNGVQFVGCVNASNPRNAQGGFD 54

Query: 61  PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASL 120
           P+LRSVLELAT+SELYELE+ILFGPSYFSPL+KS T R   DY MIE+DLEER+ FI+SL
Sbjct: 55  PDLRSVLELATNSELYELEQILFGPSYFSPLMKSITNRGQPDYAMIEEDLEERDGFISSL 114

Query: 121 ESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS 180
           ESRFLFLAADARSTLRGWRPSYR+VLL VRK LN+ CS+KLS+EDLEAEIFLHLLQEYAS
Sbjct: 115 ESRFLFLAADARSTLRGWRPSYRDVLLTVRKKLNVLCSTKLSSEDLEAEIFLHLLQEYAS 174

Query: 181 EESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKI 240
           EES            ++ + +L+LGL QWKVQ  AA + GA +L+S++L+GG + T+VK+
Sbjct: 175 EES---------VRQANLEGTLQLGLDQWKVQTSAATD-GASDLQSLILRGGSLITVVKM 224

Query: 241 YQLVGELLS 249
           +Q+    LS
Sbjct: 225 FQVFARTLS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839209|ref|XP_002887486.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata] gi|297333327|gb|EFH63745.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 179/241 (74%), Gaps = 1/241 (0%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   S +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSRHLSLTKLSLQIPRTGWRRKQLGFALASAAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPS FSPLLKS   +   D +MI QD++ R+ +I +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSSFSPLLKSIPNKGGRDRLMIGQDIQVRDGYIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPG 188
           ADARSTLRGWRPSY+NVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG
Sbjct: 128 ADARSTLRGWRPSYKNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPG 187

Query: 189 SWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVGELL 248
            WENSE S+A+ SLELGLS+WKV+ LAA + GA E++SM+LKGGG+ T  K+YQL+ + L
Sbjct: 188 LWENSEVSEAKGSLELGLSKWKVELLAALHVGATEVQSMILKGGGVITFAKVYQLLAKKL 247

Query: 249 S 249
           S
Sbjct: 248 S 248

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11120789|gb|AAG30969.1|AC012396_5 unknown protein [Arabidopsis thaliana]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 175/244 (71%), Gaps = 7/244 (2%)

Query: 10  VLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLE 68
           V+ P    PF+   + +KL+     +  RR  L     +  A  S  +  +DPELR V E
Sbjct: 8   VVAPPHRCPFSSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEATYDPELRLVFE 67

Query: 69  LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLA 128
           LATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLA
Sbjct: 68  LATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLA 127

Query: 129 ADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ---EYASEESGV 185
           ADARSTL   RPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+     Y+ E SGV
Sbjct: 128 ADARSTL---RPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSRYSGEASGV 184

Query: 186 FPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLVG 245
           FPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+ T  K+YQL+ 
Sbjct: 185 FPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLA 244

Query: 246 ELLS 249
           + LS
Sbjct: 245 KKLS 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006040001 SubName- Full=Chromosome undetermined scaffold_163, whole genome shotgun sequence; (312 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PRK10236	237	hypothetical protein; Provisional	100.0
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	99.61
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	98.92
PF13099	35	DUF3944: Domain of unknown function (DUF3944)	96.59
PF03250	147	Tropomodulin: Tropomodulin; InterPro: IPR004934 Ac	82.87
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	82.16

>PRK10236 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=268.80  Aligned_cols=125  Identities=18%  Similarity=0.313  Sum_probs=115.7

Q ss_pred             hHHHHHHHhhChHHHHHHHHHhc-----CCCCCCccchhhc-cc---CCcchHHHhhhhHHHHHHHHHHHHHHhhhcccc
Q 025586           61 PELRSVLELATDSELYELERILF-----GPSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAADA  131 (250)
Q Consensus        61 ~ELr~~LeLATdEEL~eL~~ILf-----~~r~fsPLlkS~~-kr---~~~Dy~~~~~~~~~R~~~i~~IE~RfqfLAADs  131 (250)
                      |++.+||..|++|||.+|++||+     ..|+++.|+++.. |+   +.+||.+          ||+.||+||||||||+
T Consensus         8 D~DL~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~~----------yw~~Ia~elq~fGgnt   77 (237)
T PRK10236          8 DSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRR----------NWQLIAGELQHFGGDS   77 (237)
T ss_pred             CccHHHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHHH----------HHHHHHHHHHHhcchH
Confidence            34447999999999999999999     4577888888854 66   8999999          9999999999999999


Q ss_pred             -cchhccCCchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhhhh
Q 025586          132 -RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLS  207 (250)
Q Consensus       132 -~tvLRG~~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~~ss~~~~~~~~aWekm~~~~~~~sl~~~~~  207 (250)
                       +|+|||+|++|||||+|||+||||||++++||++||++||+|+|++           +|+||+++ +++++...++
T Consensus        78 ~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~~kms~e-E~~~L~~~l~  142 (237)
T PRK10236         78 IANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKKMDEE-HKQEFLHAVD  142 (237)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHCCHH-HHHHHHHHHh
Confidence             5799999999999999999999999999999999999999999999           99999999 9999999998

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.61  E-value=6e-17  Score=143.27  Aligned_cols=70  Identities=16%  Similarity=0.338  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhhhcccc-cchhccCCchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 025586          116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE  194 (250)
Q Consensus       116 ~i~~IE~RfqfLAADs-~tvLRG~~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~~ss~~~~~~~~aWekm~  194 (250)
                      ||+.|++++|++++|+ .+.|||.|+.||+||+|+|||||++|+++++|.+||+.++++||++           +|+||+
T Consensus        23 y~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il~~-----------~l~km~   91 (211)
T COG4735          23 YLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQILRN-----------PLEKML   91 (211)
T ss_pred             HHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHHHh-----------HHHHHh
Confidence            8899999999999999 7999999999999999999999999999999999999999999999           999999


Q ss_pred             ch
Q 025586          195 AS  196 (250)
Q Consensus       195 ~~  196 (250)
                      ..
T Consensus        92 ~~   93 (211)
T COG4735          92 KG   93 (211)
T ss_pred             HH
Confidence            87

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.92  E-value=3.4e-10  Score=100.74  Aligned_cols=93  Identities=23%  Similarity=0.258  Sum_probs=87.0

Q ss_pred             cchhccC--CchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhhhhhH
Q 025586          132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQW  209 (250)
Q Consensus       132 ~tvLRG~--~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~~ss~~~~~~~~aWekm~~~~~~~sl~~~~~~w  209 (250)
                      +|++||+  ..+||+-++||||+++++|..-+.|-++|.++|+|.+++           .|++.+.. +.+.|...++  
T Consensus         1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d-~~~~Lk~k~~--   66 (211)
T COG4735           1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCD-EKDKLKVKVQ--   66 (211)
T ss_pred             CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHH-HHHHHHHHHH--
Confidence            4788996  999999999999999999999999999999999999999           99999998 8999999999  


Q ss_pred             HHHHhhhcccCc-------hhhHHHHHhccceehHHHH
Q 025586          210 KVQALAAFNAGA-------VELKSMMLKGGGIYTLVKI  240 (250)
Q Consensus       210 ~~~~la~~~lg~-------~~~~~~~lKGgsalavssi  240 (250)
                        +.++.+.+.+       +|++..++|||++.+++++
T Consensus        67 --k~~~tt~Iee~ll~~il~~~l~km~~~~~~e~~~~l  102 (211)
T COG4735          67 --KELGTTEIEEPLLLQILRNPLEKMLKGGKAEAVDSL  102 (211)
T ss_pred             --HhhccccccchhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence              7788888877       9999999999999999987

>PF13099 DUF3944: Domain of unknown function (DUF3944)

Probab=96.59  E-value=0.0023  Score=43.40  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             chHHHHHHHhhChHHHHHHHHHhcCCCCCC
Q 025586           60 DPELRSVLELATDSELYELERILFGPSYFS   89 (250)
Q Consensus        60 d~ELr~~LeLATdEEL~eL~~ILf~~r~fs   89 (250)
                      -|+..+||..|++|+|.+|++||+.-+-.+
T Consensus         3 ~D~DLeFL~~cs~edL~~L~~~Lt~dkdG~   32 (35)
T PF13099_consen    3 YDSDLEFLAECSNEDLKDLVDILTHDKDGK   32 (35)
T ss_pred             cCcchHHHHHCCHHHHHHHHHHHhcCCCCC
Confidence            367889999999999999999999655333

>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end

Probab=82.87  E-value=2  Score=37.34  Aligned_cols=31  Identities=45%  Similarity=0.549  Sum_probs=27.1

Q ss_pred             cCCCCCCchHHHHHHHhhChHHHHHHHHHhc
Q 025586           53 SKGQGAFDPELRSVLELATDSELYELERILF   83 (250)
Q Consensus        53 ~~~~~~~d~ELr~~LeLATdEEL~eL~~ILf   83 (250)
                      ....-..++||.++|.-|||+||.+|+.||-
T Consensus       109 ~ee~v~ldpeleeaL~~Atd~El~dlAaILG  139 (147)
T PF03250_consen  109 KEEQVTLDPELEEALSNATDAELCDLAAILG  139 (147)
T ss_pred             cccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence            3445678899999999999999999999995

To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=82.16  E-value=0.44  Score=38.20  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhhcccc-cchhccCCchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 025586          116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE  194 (250)
Q Consensus       116 ~i~~IE~RfqfLAADs-~tvLRG~~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~~ss~~~~~~~~aWekm~  194 (250)
                      +.+.+++||++++... +...|                |+..+   -+..++|++||.++.++           ++++|.
T Consensus         5 ~~dt~~~~f~~~~lh~~l~~~R----------------Lk~~~---~~~~~~~q~l~~~~~~d-----------~~~~l~   54 (141)
T PF03981_consen    5 VPDTFAGRFQMLGLHVWLVLRR----------------LKAEG---KEGKELEQALFDKFFED-----------MDERLR   54 (141)
T ss_pred             CccCHHHHHHHHHHHHHHHHHH----------------Hcccc---ccHHHHHHHHHHHHHHH-----------HHHHHH
Confidence            4578999999999988 45444                77766   45699999999999999           888887


Q ss_pred             ch
Q 025586          195 AS  196 (250)
Q Consensus       195 ~~  196 (250)
                      +.
T Consensus        55 ~~   56 (141)
T PF03981_consen   55 EM   56 (141)
T ss_pred             Hh
Confidence            66

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 45/305 (14%), Positives = 83/305 (27%), Gaps = 100/305 (32%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVA--LSSKGQGA 58
           +A+       +Q      F +     L   N +SP   + +       +    +S+   +
Sbjct: 166 VALDVCLSYKVQCKM--DFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 59  FDPELRSVLELATDSELYELERILFGPSYFSPLL-----------KSF---------TKR 98
            + +LR        S   EL R+L    Y + LL            +F         T+ 
Sbjct: 221 SNIKLR------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 99  ADV-DYV----MIEQDLEEREDFIASLESRFLF----------LAADARST--------- 134
             V D++         L+     +   E + L           L  +  +T         
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 135 --LRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS--- 189
             +R    ++ N        L      + S   LE   +  +    +     VFP S   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLS-----VFPPSAHI 387

Query: 190 --------WENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL--KSMMLKGG--GIYTL 237
                   W +   SD    +                    +L   S++ K       ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVN-------------------KLHKYSLVEKQPKESTISI 428

Query: 238 VKIYQ 242
             IY 
Sbjct: 429 PSIYL 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2jx3_A	131	Protein DEK; alpha helix, SAF/SAP motif, DNA bindi	80.61

>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}

Probab=80.61  E-value=8.8  Score=31.00  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             chHHHHHHHhhChHHHHHHHHHhcCCCCCCc--cchhhcccCCcchHHHhhhhHHHHHHHHHHHHHHhhhcccccchhcc
Q 025586           60 DPELRSVLELATDSELYELERILFGPSYFSP--LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG  137 (250)
Q Consensus        60 d~ELr~~LeLATdEEL~eL~~ILf~~r~fsP--LlkS~~kr~~~Dy~~~~~~~~~R~~~i~~IE~RfqfLAADs~tvLRG  137 (250)
                      .|.+...+...+-++|..|.+|||++. ...  +-+++..=.+..+.   .++.+++.-.+.|+                
T Consensus        14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~---~~~~~~~k~~e~l~----------------   73 (131)
T 2jx3_A           14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFE---KGSVQYKKKEEMLK----------------   73 (131)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCC---CSSHHHHHHHHHHH----------------
T ss_pred             cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCC---ccHHHHHHHHHHHH----------------
Confidence            466777788888889999999999886 333  11222211122221   12223332223332                


Q ss_pred             CCchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 025586          138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ  176 (250)
Q Consensus       138 ~~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~  176 (250)
                        .....-|.++|+=|+|+++.  +.+||-+.|+-.|+.
T Consensus        74 --K~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~  108 (131)
T 2jx3_A           74 --KFRNAMLKSICEVLDLERSG--VNSELVKRILNFLMH  108 (131)
T ss_dssp             --HHHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTS
T ss_pred             --ccCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhC
Confidence              12467899999999999984  578888887766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00