Citrus Sinensis ID: 025617

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF
ccHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccccccccEEEEccccccccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccc
cHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccEEcccEEEEEEEEccccEEEEcccccccccEccEEccccc
MGAPQAIVFFLILLQTCKTAAQHeewnsatatytketngsiiiegacgygdlhratyGKYSAGLSTMLfnrgstcgacfelrcvdhilwcrpgspsviltatdfcppnyglssdyggwcnfpkehfEMSEAAFVEIAERRAdivpvqyrrvkcerrgglrftvsgsSHFYQVLVTNVGLDGEVIAVKVKgsktgwipmarnwgqnwqsnvnltgqplsfevttsnrktltsynvapanwqfgqtyegkqf
MGAPQAIVFFLILLQTCKTAAQHEEWNSAtatytketngsIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERradivpvqyrrvkcerrgglrftvsgsshfYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTsynvapanwqfgqtyegkqf
MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF
*****AIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQ*******
**APQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF
MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF
MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
Q9SZM1256 Expansin-A20 OS=Arabidops yes no 0.976 0.953 0.647 6e-96
Q69XV9260 Expansin-A16 OS=Oryza sat yes no 0.912 0.876 0.647 1e-90
Q852A1264 Expansin-A7 OS=Oryza sati no no 0.904 0.856 0.574 2e-76
Q0DHB7246 Expansin-A4 OS=Oryza sati no no 0.972 0.987 0.567 5e-76
A2Y5R6246 Expansin-A4 OS=Oryza sati N/A no 0.972 0.987 0.567 5e-76
Q9LZ99258 Expansin-A9 OS=Arabidopsi no no 0.992 0.961 0.513 4e-75
Q9M2S9260 Expansin-A16 OS=Arabidops no no 0.972 0.934 0.528 5e-75
O48818257 Expansin-A4 OS=Arabidopsi no no 0.9 0.875 0.555 8e-75
Q40636251 Expansin-A2 OS=Oryza sati no no 0.968 0.964 0.545 1e-74
Q9M9P0266 Expansin-A13 OS=Arabidops no no 0.9 0.845 0.579 3e-74
>sp|Q9SZM1|EXP20_ARATH Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1 Back     alignment and function desciption
 Score =  350 bits (897), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 160/247 (64%), Positives = 198/247 (80%), Gaps = 3/247 (1%)

Query: 6   AIVFFLILLQTCKTAAQHEEWNSATATYTKETNGS--IIIEGACGYGDLHRATYGKYSAG 63
           A+  F IL +  +  A+ ++W  ATAT +++ +GS  +   GACGYGDL ++++  YSAG
Sbjct: 9   ALCLFFILCRLFQATAE-DDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAG 67

Query: 64  LSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPK 123
           LS  LFNRGS+CGAC E+RCV+HI WC  GSPSV++TATDFCPPN GLSSDYGGWCNFPK
Sbjct: 68  LSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPK 127

Query: 124 EHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEV 183
           EH E+S AAF  IAE RA+++P+QYRRVKC RRGGLRF++SGSSHF+QVL++NVGLDGEV
Sbjct: 128 EHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEV 187

Query: 184 IAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQ 243
           + VKVKG  T WIPMARNWGQNW S+++L GQ LSFEVT    KT+ SY+VAP  W+FG 
Sbjct: 188 VGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGM 247

Query: 244 TYEGKQF 250
           TY+GKQF
Sbjct: 248 TYQGKQF 254
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q69XV9|EXP16_ORYSJ Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|Q852A1|EXPA7_ORYSJ Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHB7|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|A2Y5R6|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ99|EXPA9_ARATH Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2S9|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1 Back     alignment and function description
>sp|O48818|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1 Back     alignment and function description
>sp|Q40636|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9M9P0|EXP13_ARATH Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
224131928250 hypothetical protein POPTRDRAFT_827261 [ 1.0 1.0 0.852 1e-127
224104807250 hypothetical protein POPTRDRAFT_820963 [ 1.0 1.0 0.84 1e-126
255546692251 Alpha-expansin 20 precursor, putative [R 1.0 0.996 0.808 1e-121
225428338250 PREDICTED: expansin-A20 [Vitis vinifera] 1.0 1.0 0.804 1e-118
449454428252 PREDICTED: expansin-A16-like [Cucumis sa 0.976 0.968 0.8 1e-118
356517524254 PREDICTED: expansin-A16-like [Glycine ma 1.0 0.984 0.760 1e-114
356542918254 PREDICTED: expansin-A16-like [Glycine ma 1.0 0.984 0.749 1e-113
255646620254 unknown [Glycine max] 1.0 0.984 0.745 1e-112
388500886256 unknown [Medicago truncatula] 1.0 0.976 0.749 1e-112
429345743240 expansin 4, partial [Populus tremula] 0.836 0.870 0.889 1e-111
>gi|224131928|ref|XP_002328142.1| hypothetical protein POPTRDRAFT_827261 [Populus trichocarpa] gi|222837657|gb|EEE76022.1| hypothetical protein POPTRDRAFT_827261 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/250 (85%), Positives = 233/250 (93%)

Query: 1   MGAPQAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKY 60
           MGA +A++ +LI+ QT K  A  EEW SATATY KETNGSI++EGACGY DLH+ATYGKY
Sbjct: 1   MGALKAMLLYLIIHQTWKITADDEEWKSATATYVKETNGSIVVEGACGYADLHKATYGKY 60

Query: 61  SAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCN 120
           SAGLS+MLFNRGSTCGACFE+RCVDHILWC  GSPSVILTATDFCPPNYGLS+DYGGWCN
Sbjct: 61  SAGLSSMLFNRGSTCGACFEVRCVDHILWCLQGSPSVILTATDFCPPNYGLSADYGGWCN 120

Query: 121 FPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLD 180
           FPKEHF+MSEAAF EIAE++ADIVPVQ+RRVKCERRGGLRFTVSG+ HFYQVL++NVGLD
Sbjct: 121 FPKEHFDMSEAAFTEIAEKKADIVPVQHRRVKCERRGGLRFTVSGNFHFYQVLISNVGLD 180

Query: 181 GEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQ 240
           GEVIAVKVKGSKT WIPMARNWGQNWQSNVNL GQPLSFEVTTS+RKTLTSYNVAPANWQ
Sbjct: 181 GEVIAVKVKGSKTAWIPMARNWGQNWQSNVNLIGQPLSFEVTTSSRKTLTSYNVAPANWQ 240

Query: 241 FGQTYEGKQF 250
           FGQT+EGKQF
Sbjct: 241 FGQTFEGKQF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224104807|ref|XP_002313572.1| hypothetical protein POPTRDRAFT_820963 [Populus trichocarpa] gi|118483271|gb|ABK93538.1| unknown [Populus trichocarpa] gi|222849980|gb|EEE87527.1| hypothetical protein POPTRDRAFT_820963 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546692|ref|XP_002514405.1| Alpha-expansin 20 precursor, putative [Ricinus communis] gi|223546502|gb|EEF48001.1| Alpha-expansin 20 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225428338|ref|XP_002283145.1| PREDICTED: expansin-A20 [Vitis vinifera] gi|297744459|emb|CBI37721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454428|ref|XP_004144957.1| PREDICTED: expansin-A16-like [Cucumis sativus] gi|449473011|ref|XP_004153758.1| PREDICTED: expansin-A16-like [Cucumis sativus] gi|449517152|ref|XP_004165610.1| PREDICTED: expansin-A16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517524|ref|XP_003527437.1| PREDICTED: expansin-A16-like [Glycine max] Back     alignment and taxonomy information
>gi|356542918|ref|XP_003539911.1| PREDICTED: expansin-A16-like [Glycine max] Back     alignment and taxonomy information
>gi|255646620|gb|ACU23784.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388500886|gb|AFK38509.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|429345743|gb|AFZ84552.1| expansin 4, partial [Populus tremula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2120943256 EXPA20 "expansin A20" [Arabido 0.976 0.953 0.647 2.5e-90
TAIR|locus:2097695266 EXPA13 "expansin A13" [Arabido 0.9 0.845 0.579 8.6e-72
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.9 0.865 0.56 8.6e-72
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.9 0.875 0.555 1.4e-71
TAIR|locus:2180182258 EXPA9 "expansin A9" [Arabidops 0.9 0.872 0.555 6.1e-71
TAIR|locus:2040686262 EXP3 [Arabidopsis thaliana (ta 0.9 0.858 0.568 1.6e-70
TAIR|locus:2053260257 EXPA6 "expansin A6" [Arabidops 0.9 0.875 0.551 1.4e-69
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.964 0.945 0.530 1.3e-68
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.968 0.956 0.520 1.5e-67
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.892 0.881 0.561 1.9e-67
TAIR|locus:2120943 EXPA20 "expansin A20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 160/247 (64%), Positives = 198/247 (80%)

Query:     6 AIVFFLILLQTCKTAAQHEEWNSATATYTKETNGS--IIIEGACGYGDLHRATYGKYSAG 63
             A+  F IL +  +  A+ ++W  ATAT +++ +GS  +   GACGYGDL ++++  YSAG
Sbjct:     9 ALCLFFILCRLFQATAE-DDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAG 67

Query:    64 LSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPK 123
             LS  LFNRGS+CGAC E+RCV+HI WC  GSPSV++TATDFCPPN GLSSDYGGWCNFPK
Sbjct:    68 LSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPK 127

Query:   124 EHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEV 183
             EH E+S AAF  IAE RA+++P+QYRRVKC RRGGLRF++SGSSHF+QVL++NVGLDGEV
Sbjct:   128 EHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEV 187

Query:   184 IAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQ 243
             + VKVKG  T WIPMARNWGQNW S+++L GQ LSFEVT    KT+ SY+VAP  W+FG 
Sbjct:   188 VGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGM 247

Query:   244 TYEGKQF 250
             TY+GKQF
Sbjct:   248 TYQGKQF 254
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
GO:0006949 "syncytium formation" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2097695 EXPA13 "expansin A13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2Y5R6EXPA4_ORYSINo assigned EC number0.56730.9720.9878N/Ano
Q9SZM1EXP20_ARATHNo assigned EC number0.64770.9760.9531yesno
Q69XV9EXP16_ORYSJNo assigned EC number0.64780.9120.8769yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrEXPA22
hypothetical protein (250 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-92
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-84
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 1e-40
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 1e-31
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 3e-19
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 2e-13
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information 
 Score =  272 bits (697), Expect = 1e-92
 Identities = 130/244 (53%), Positives = 174/244 (71%), Gaps = 4/244 (1%)

Query: 7   IVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLST 66
           IV  L +L+  +       W  A AT+    + S  + GACGYG+L+   YG  +A LST
Sbjct: 8   IVALLSILKIVEGYGSG--WTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALST 65

Query: 67  MLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHF 126
            LFN G +CGACFE++CV+  +WC PGS  +I+TAT+FCPPN  L ++ GGWCN P++HF
Sbjct: 66  ALFNNGLSCGACFEIKCVNDNIWCLPGS--IIITATNFCPPNLALPNNDGGWCNPPQQHF 123

Query: 127 EMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAV 186
           ++S+  F +IA+ +A IVPVQYRRV C + GG+RFT++G S+F  VL+TNVG  G+++AV
Sbjct: 124 DLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAV 183

Query: 187 KVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYE 246
            +KGSK+ W  M+RNWGQNWQSN  L GQ LSF+VTTS+ +T+ S N AP+NW FGQTY 
Sbjct: 184 SIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYT 243

Query: 247 GKQF 250
           G QF
Sbjct: 244 GMQF 247

Length = 247
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.95
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.95
PLN00115118 pollen allergen group 3; Provisional 99.89
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.88
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.78
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.92
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.15
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.87
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.44
PRK10672361 rare lipoprotein A; Provisional 97.02
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.68
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-72  Score=499.20  Aligned_cols=233  Identities=49%  Similarity=0.948  Sum_probs=218.2

Q ss_pred             hhccccCCCceEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEc--CCCcccCCCC
Q 025617           17 CKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCV--DHILWCRPGS   94 (250)
Q Consensus        17 ~~~~~~~~~~~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~--~~~~~C~~g~   94 (250)
                      .......++|++++|||||++|+.++++|||||+++...+++.++||+|++||++|++||+||||+|.  ..+.+|.++ 
T Consensus        21 ~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-   99 (256)
T PLN00193         21 NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-   99 (256)
T ss_pred             hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-
Confidence            33334555899999999999999999999999999888899999999999999999999999999995  245689876 


Q ss_pred             CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEeccCCceeEEEcCCcceEEEEE
Q 025617           95 PSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLV  174 (250)
Q Consensus        95 ~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~~~~yw~~v~v  174 (250)
                      ++|+|+|||+||.++.+|+++++||.+++.|||||.+||.+||.+..|+|+|+||||+|+++|+|+|++++++||++|+|
T Consensus       100 ~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv  179 (256)
T PLN00193        100 ASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLI  179 (256)
T ss_pred             CeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEE
Confidence            49999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcceEEEEEEecCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCcCCcEEec-cCC
Q 025617          175 TNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEG-KQF  250 (250)
Q Consensus       175 ~n~~g~~~I~sVeI~~~~~~W~~m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~vv~~~viP~~w~~G~~y~~-~~~  250 (250)
                      .|++|+++|++|+||+++++|++|+|+||++|+.+.+|.++||+||||+.+|+++++.||||++|++|.||++ +||
T Consensus       180 ~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        180 SNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             EEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence            9999999999999999877899999999999999888888899999999999999999999999999999977 698

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 1e-18
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 5e-18
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 19  TAAQHEEWNSATATYTKETNGSIIIE--GACGYGDLHRATYGKYSAGLSTMLFNRGSTCG 76
           TA   ++W  A +T+  +  G+   +  GACGY D+ +  +   +   +T +F  G  CG
Sbjct: 12  TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCG 71
Query: 77  ACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEI 136
           +CFE++C      C  G P V+    D   P                 HF++S  AF  +
Sbjct: 72  SCFEIKCTKPEA-CS-GEPVVVHITDDNEEP-------------IAPYHFDLSGHAFGAM 116
Query: 137 AE-------RRADIVPVQYRRVKCERRGGLRFTV----SGSSHFYQVLVTNVGLDGEVIA 185
           A+       R A  + +Q+RRVKC+   G + T       + ++  +LV  V  DG+V+A
Sbjct: 117 AKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVA 176
Query: 186 VKVK-GSKTGWIPMARNWGQNWQSNV--NLTGQPLSFEVTTSNRKTLTSYNVAPANWQFG 242
           V +K   K  WI +  +WG  W+ +    LTG P +   TT       + +V P  W+  
Sbjct: 177 VDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKAD 235
Query: 243 QTYEGK 248
            +YE K
Sbjct: 236 TSYESK 241
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 2e-60
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 9e-59
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 9e-49
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 1e-31
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 6e-31
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 5e-30
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 6e-26
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  190 bits (482), Expect = 2e-60
 Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 31/248 (12%)

Query: 19  TAAQHEEWNSATATY--TKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCG 76
           T   + +W +A AT+       G+    GACG  +++   Y   +A  +  +F  G  CG
Sbjct: 12  TTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCG 71

Query: 77  ACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEI 136
           +C+E+RC +    C     +V +T  ++ P                  HF++S  AF  +
Sbjct: 72  SCYEVRCKEKP-ECSGNPVTVYITDMNYEPIAPY--------------HFDLSGKAFGSL 116

Query: 137 AE-------RRADIVPVQYRRVKCERRGGLRFTV----SGSSHFYQVLVTNVGLDGEVIA 185
           A+       R   I+ V++RRV+C+   G +         + ++  VLV  V  DG+++ 
Sbjct: 117 AKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVL 176

Query: 186 VKVKGSKTG-WIPMARNWGQNWQSN-VNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQ 243
           ++++   +  W PM  +WG  W+ +       P S  +T+ + K + + +V PANW+   
Sbjct: 177 MEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDA 236

Query: 244 TYEGK-QF 250
            Y    QF
Sbjct: 237 VYTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.96
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.94
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.91
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.64
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.22
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.01
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.01
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 97.92
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.9
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.84
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.73
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 95.34
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=6.2e-66  Score=456.08  Aligned_cols=216  Identities=30%  Similarity=0.620  Sum_probs=199.3

Q ss_pred             ccccCCCceEEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCcccCCCCCe
Q 025617           19 TAAQHEEWNSATATYTKETNGSII--IEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPS   96 (250)
Q Consensus        19 ~~~~~~~~~~g~aT~Yg~~~g~~~--~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~s   96 (250)
                      ..++.++|+.|+||||+++++.++  ++|||||++++..|++.++||+|+++|++|++||+||||+|.+.+ +|.++  +
T Consensus        12 ~~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~-~C~~~--s   88 (245)
T 2hcz_X           12 TTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKP-ECSGN--P   88 (245)
T ss_dssp             CSCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSS-SBCSS--C
T ss_pred             CcccCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCC-ccCCC--C
Confidence            346778999999999999998877  899999999888899999999999999999999999999998755 59876  8


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhc-------ccCCeeceEEEEEEeccC--CceeEEEcC--
Q 025617           97 VILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAE-------RRADIVPVQYRRVKCERR--GGLRFTVSG--  165 (250)
Q Consensus        97 v~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~--g~i~~~v~~--  165 (250)
                      |+|+|||+||            |++++.|||||++||.+||+       ++.|+|+|+||||+|+++  ++|+|++++  
T Consensus        89 v~V~VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs  156 (245)
T 2hcz_X           89 VTVYITDMNY------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGC  156 (245)
T ss_dssp             EEEEEEEECC------------CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCC
T ss_pred             EEEEEEeccC------------CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCC
Confidence            9999999998            65567999999999999999       789999999999999998  479999985  


Q ss_pred             CcceEEEEEEEecCCcceEEEEEEecC-CceeecccccCceEEeCCC--CCCcceEEEEEecCCcEEEEccccCCCCcCC
Q 025617          166 SSHFYQVLVTNVGLDGEVIAVKVKGSK-TGWIPMARNWGQNWQSNVN--LTGQPLSFEVTTSNRKTLTSYNVAPANWQFG  242 (250)
Q Consensus       166 ~~yw~~v~v~n~~g~~~I~sVeI~~~~-~~W~~m~r~~g~~W~~~~~--l~g~P~~vrvts~~G~~vv~~~viP~~w~~G  242 (250)
                      ++||++|+|.|++|.++|++|||++++ +.|++|+|+|||+|+.++.  |.+ ||+||||+.+|++|+++||||++|++|
T Consensus       157 ~~~~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g  235 (245)
T 2hcz_X          157 NPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPD  235 (245)
T ss_dssp             SSSCCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCCTT
T ss_pred             CcceEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCCCC
Confidence            999999999999999999999999985 4899999999999998764  778 999999999999999999999999999


Q ss_pred             cEEec-cCC
Q 025617          243 QTYEG-KQF  250 (250)
Q Consensus       243 ~~y~~-~~~  250 (250)
                      .+|++ +||
T Consensus       236 ~ty~~~~qf  244 (245)
T 2hcz_X          236 AVYTSNVQF  244 (245)
T ss_dssp             CEEECSCCC
T ss_pred             CEEeCcccc
Confidence            99977 698
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 4e-40
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 5e-37
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 1e-31
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 1e-29
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  134 bits (339), Expect = 4e-40
 Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 36/172 (20%)

Query: 26  WNSATATYTKETNGSIIIEGACGYGDLHRAT-----YGKYSAGLSTMLFN------RGST 74
            + A+ T   +++      GACG G            G + A  S M F+       G  
Sbjct: 14  KSCASTTNYHDSHK-----GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 75  CGACFELRCVDHILWCRPGSP----SVILTATDFCPPNYGLSSDYGGWCNFPKE------ 124
           CG C +L      +  + G      S     T+ CP  Y        WCN   +      
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYP----NQDWCNQGSQYGGHNK 124

Query: 125 -----HFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQ 171
                H ++      ++     +     +  V C+           +S + Q
Sbjct: 125 YGYELHLDLENG-RSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYGQ 175
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.95
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.92
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.51
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.81
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=1.5e-37  Score=252.26  Aligned_cols=125  Identities=31%  Similarity=0.586  Sum_probs=104.3

Q ss_pred             ccccCCCceEEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCcccCCCCCe
Q 025617           19 TAAQHEEWNSATATYTKETNGSII--IEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPS   96 (250)
Q Consensus        19 ~~~~~~~~~~g~aT~Yg~~~g~~~--~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~s   96 (250)
                      +.+..++|++|+|||||++++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.+. .+|.++  +
T Consensus        10 ~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~-~~c~~~--s   86 (143)
T d1n10a2          10 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKP-EACSGE--P   86 (143)
T ss_dssp             CCBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSS-TTBCSC--C
T ss_pred             ccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCC-CcccCC--C
Confidence            345668999999999999887654  47999999988889999999999999999999999999999874 579876  9


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcc-------cCCeeceEEEEEEeccCCc
Q 025617           97 VILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAER-------RADIVPVQYRRVKCERRGG  158 (250)
Q Consensus        97 v~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~r~V~C~~~g~  158 (250)
                      |+|+|||.||+           |. +.+|||||++||.+||+.       +.|+|+|+||||+|.++|+
T Consensus        87 v~V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          87 VVVHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             EEEEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             EEEEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence            99999999994           22 358999999999999984       6799999999999999863
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure