Citrus Sinensis ID: 025625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQV
cccccccccccccccccEEEEcccccEEEEcHHHHHHcHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccc
ccHcHHHHHcHHHcccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHccccccccccEccccccHcccHHHHccccccHHcccccccc
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKgmgssknyaislpqrvNPAMLSLILDYCrfhqvpgssnkerksFDEKFIRMDTKRLCELtsaadslqlkplvDLTSRALARIIEGKTPEEIREIfhlpddlteeekleplknttddprIRLLNRLYAKKRKELKEREklknveseeervdersvDDLLQFinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqv
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFhqvpgssnkerksfdEKFIRMDTKRLCELTsaadslqlkplvdLTSRALARiiegktpeeireifhlpddlteeekleplknttddprirlLNRLYAkkrkelkereklknveseeervdersvddllqfinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqv
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAkkrkelkereklkNveseeervdersvddLLQFINGGERDSKGTkssknkkknqrkkdqlkdTCPIESIKTDKQV
*******VIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQV*************KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHL*********************************************************************************************************
*******************LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKL********DP**R********************************SVDDLLQ*******************************************
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE***************SVDDLLQFINGGE**********************KDTCPIESIKTDKQV
*************MKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGG**************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLxxxxxxxxxxxxxxxxxxxxxESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
Q8LF97 351 SKP1-like protein 21 OS=A yes no 0.84 0.598 0.924 1e-111
A8MQG7 352 SKP1-like protein 20 OS=A no no 0.864 0.613 0.881 1e-109
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.532 0.869 0.35 1e-16
Q557E4162 SCF ubiquitin ligase comp yes no 0.524 0.808 0.366 1e-16
P52285162 SCF ubiquitin ligase comp yes no 0.524 0.808 0.366 1e-16
Q71U00163 S-phase kinase-associated N/A no 0.532 0.815 0.351 3e-15
Q5R512163 S-phase kinase-associated yes no 0.532 0.815 0.351 3e-15
Q4R5B9163 S-phase kinase-associated N/A no 0.532 0.815 0.351 3e-15
P63208163 S-phase kinase-associated yes no 0.532 0.815 0.351 3e-15
Q5ZKF5163 S-phase kinase-associated yes no 0.532 0.815 0.351 3e-15
>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1 Back     alignment and function desciption
 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/211 (92%), Positives = 202/211 (95%), Gaps = 1/211 (0%)

Query: 1   MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
           MSE +MA+IKPEMMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISL
Sbjct: 1   MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query: 61  PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
           PQRVNPAMLSLI DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLV
Sbjct: 61  PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180
           DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYAKKRKE
Sbjct: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKE 180

Query: 181 LKEREKLKNVESEEERVDERSVDDLLQFING 211
           LKEREKLK+VE  EE VDERSVDDLL FING
Sbjct: 181 LKEREKLKSVEV-EEHVDERSVDDLLSFING 210
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1 Back     alignment and function description
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1 Back     alignment and function description
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
224067902345 predicted protein [Populus trichocarpa] 0.98 0.710 0.850 1e-114
356531993347 PREDICTED: SKP1-like protein 21-like [Gl 0.996 0.717 0.8 1e-113
255541614 359 ubiquitin-protein ligase, putative [Rici 0.952 0.662 0.878 1e-113
225454254 388 PREDICTED: SKP1-like protein 21-like [Vi 0.984 0.634 0.853 1e-113
297745305 351 unnamed protein product [Vitis vinifera] 0.984 0.700 0.853 1e-113
224130292211 predicted protein [Populus trichocarpa] 0.844 1.0 0.928 1e-111
449456470 425 PREDICTED: SKP1-like protein 21-like [Cu 0.944 0.555 0.857 1e-109
186511286349 SKP1-like protein 21 [Arabidopsis thalia 0.84 0.601 0.924 1e-109
18411999 351 SKP1-like protein 21 [Arabidopsis thalia 0.84 0.598 0.924 1e-109
42569956342 SKP1-like protein 20 [Arabidopsis thalia 0.864 0.631 0.881 1e-108
>gi|224067902|ref|XP_002302590.1| predicted protein [Populus trichocarpa] gi|222844316|gb|EEE81863.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/247 (85%), Positives = 228/247 (92%), Gaps = 2/247 (0%)

Query: 1   MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
           MSEVDMAV+KPEMM+SYIW+QT DG++QQVEQEVAMFCP+ICQEVI KGMGSSKNYAISL
Sbjct: 1   MSEVDMAVVKPEMMRSYIWIQTTDGAVQQVEQEVAMFCPMICQEVILKGMGSSKNYAISL 60

Query: 61  PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
           PQRV  +M SLILD+CRFHQVPG SNKERKSFDEKF+RMDTKRLCELTSAA+SLQLKPLV
Sbjct: 61  PQRVGTSMFSLILDFCRFHQVPGRSNKERKSFDEKFVRMDTKRLCELTSAAESLQLKPLV 120

Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180
           DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE
Sbjct: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180

Query: 181 LKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCP 240
           LKEREKLKNVE+EEE VD+RSVDDLL FINGG+ DSKG K+SKN+KK Q++KD+ K  C 
Sbjct: 181 LKEREKLKNVEAEEEHVDDRSVDDLLSFINGGDGDSKGMKTSKNRKKQQKRKDRQK--CA 238

Query: 241 IESIKTD 247
            E  K D
Sbjct: 239 PEMHKKD 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356531993|ref|XP_003534559.1| PREDICTED: SKP1-like protein 21-like [Glycine max] Back     alignment and taxonomy information
>gi|255541614|ref|XP_002511871.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223549051|gb|EEF50540.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454254|ref|XP_002275024.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745305|emb|CBI40385.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130292|ref|XP_002320801.1| predicted protein [Populus trichocarpa] gi|222861574|gb|EEE99116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456470|ref|XP_004145972.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus] gi|449524038|ref|XP_004169030.1| PREDICTED: SKP1-like protein 21-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|186511286|ref|NP_001118876.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|332646678|gb|AEE80199.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18411999|ref|NP_567113.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|75155821|sp|Q8LF97.1|ASK21_ARATH RecName: Full=SKP1-like protein 21; Short=AtSK21 gi|21537190|gb|AAM61531.1| putative SKP1-like protein [Arabidopsis thaliana] gi|332646677|gb|AEE80198.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42569956|ref|NP_566058.2| SKP1-like protein 20 [Arabidopsis thaliana] gi|330255526|gb|AEC10620.1| SKP1-like protein 20 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:505006407 351 SK21 "AT3G61415" [Arabidopsis 0.7 0.498 0.937 1e-84
TAIR|locus:2050709 352 SK20 "AT2G45950" [Arabidopsis 0.856 0.607 0.778 5e-83
DICTYBASE|DDB_G0269230162 fpaA "ubiquitin ligase subunit 0.54 0.833 0.369 2.2e-18
DICTYBASE|DDB_G0273615162 fpaB-2 "ubiquitin ligase subun 0.54 0.833 0.369 2.8e-18
DICTYBASE|DDB_G0273251162 fpaB-1 "ubiquitin ligase subun 0.54 0.833 0.369 2.8e-18
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.552 0.901 0.344 4.6e-18
TAIR|locus:2165825171 ASK2 "AT5G42190" [Arabidopsis 0.296 0.432 0.459 2.3e-17
UNIPROTKB|Q5ZKF5163 SKP1 "S-phase kinase-associate 0.564 0.865 0.352 5.3e-17
UNIPROTKB|Q3ZCF3163 SKP1 "S-phase kinase-associate 0.564 0.865 0.352 5.3e-17
UNIPROTKB|P63208163 SKP1 "S-phase kinase-associate 0.564 0.865 0.352 5.3e-17
TAIR|locus:505006407 SK21 "AT3G61415" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 164/175 (93%), Positives = 170/175 (97%)

Query:     1 MSEVDMAVIKPEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISL 60
             MSE +MA+IKPEMMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISL
Sbjct:     1 MSEGEMAIIKPEMMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISL 60

Query:    61 PQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLV 120
             PQRVNPAMLSLI DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLV
Sbjct:    61 PQRVNPAMLSLIFDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLV 120

Query:   121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYA 175
             DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYA
Sbjct:   121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYA 175
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS
TAIR|locus:2050709 SK20 "AT2G45950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LF97ASK21_ARATHNo assigned EC number0.92410.840.5982yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II001479
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
smart00512104 smart00512, Skp1, Found in Skp1 protein family 4e-24
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 2e-17
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 2e-13
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 4e-24
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 15  KSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILD 74
             YI L ++DG + +VE+EVA     I   +   G+    N  I LP  V   +LS +++
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPN-VTSKILSKVIE 59

Query: 75  YCRFHQVPGSSNKE---RKSFDEKFIRMDTKRLCELTSAADSLQL 116
           YC  H     S  +     ++D +F+++D + L EL  AA+ L +
Sbjct: 60  YCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.94
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.9
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.71
KOG3473112 consensus RNA polymerase II transcription elongati 99.59
PHA02713 557 hypothetical protein; Provisional 98.76
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.63
PHA02790 480 Kelch-like protein; Provisional 98.61
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 98.5
PHA03098 534 kelch-like protein; Provisional 98.31
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.16
KOG4350 620 consensus Uncharacterized conserved protein, conta 94.61
KOG4682 488 consensus Uncharacterized conserved protein, conta 93.8
KOG2716230 consensus Polymerase delta-interacting protein PDI 93.18
KOG0783 1267 consensus Uncharacterized conserved protein, conta 89.34
KOG3433203 consensus Protein involved in meiotic recombinatio 87.03
COG5124209 Protein predicted to be involved in meiotic recomb 82.9
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 82.74
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-44  Score=305.40  Aligned_cols=145  Identities=37%  Similarity=0.596  Sum_probs=133.2

Q ss_pred             CCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 025625           13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS--------   84 (250)
Q Consensus        13 ~~~~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~--------   84 (250)
                      +++++|+|+|+||++|+|+.++|++|.+|++++.+.|++.. +.+|||| +|+|.||.+||+||+||+.+++        
T Consensus         2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~-~~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~   79 (162)
T KOG1724|consen    2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADE-NDPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL   79 (162)
T ss_pred             CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCcc-CCccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence            67789999999999999999999999999999999988642 2599999 7999999999999999998643        


Q ss_pred             -CchhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccc
Q 025625           85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLK  159 (250)
Q Consensus        85 -s~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~  159 (250)
                       ....++.||++|+++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+|+||+.++++
T Consensus        80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~  155 (162)
T KOG1724|consen   80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRK  155 (162)
T ss_pred             cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhh
Confidence             223489999999999999999999999999999999999999999999999999999999999999988877665

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 1e-16
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 1e-16
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 1e-16
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 2e-16
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 3e-15
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 3e-15
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 5e-14
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 4e-13
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 2e-09
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 3e-09
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 20  LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFH 79
           LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +C  H
Sbjct: 6   LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQWCTHH 59
Query: 80  Q--VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPE 137
           +    GS   +   +D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPE
Sbjct: 60  KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 119
Query: 138 EIREIFHLPDDLTEEEK 154
           EIR+ F++ +D TEEE+
Sbjct: 120 EIRKTFNIKNDFTEEEE 136
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 2e-28
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 5e-28
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 4e-26
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 2e-24
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 5e-04
2fnj_C96 Transcription elongation factor B polypeptide 1; b 7e-04
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
 Score =  104 bits (261), Expect = 2e-28
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 16/146 (10%)

Query: 16  SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDY 75
             I LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +
Sbjct: 2   PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLPN-VNAAILKKVIQW 55

Query: 76  CRFHQ----------VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSR 125
           C  H+                 +   +D++F+++D   L EL  AA+ L +K L+D+T +
Sbjct: 56  CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115

Query: 126 ALARIIEGKTPEEIREIFHLPDDLTE 151
            +A +I+GKTPEEIR+ F++ +D TE
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.93
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.92
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.92
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.89
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.92
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.88
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.79
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.78
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.75
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.71
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.68
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.67
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.66
2vpk_A116 Myoneurin; transcription regulation, transcription 98.66
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.63
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.63
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.62
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.58
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 98.58
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.48
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 98.45
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 98.4
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 98.36
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 98.27
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 87.42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-47  Score=323.32  Aligned_cols=149  Identities=26%  Similarity=0.471  Sum_probs=129.4

Q ss_pred             CCCCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCC---CCCCcccccCCCCCHHHHHHHHHHHHhccCCCC---
Q 025625           11 PEMMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMG---SSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---   84 (250)
Q Consensus        11 pe~~~~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~---~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~---   84 (250)
                      |.|++++|+|+|+||++|.|++++|++|.+|++|+.+.+..   +....+|||| +|++.+|++||+||+||+.++.   
T Consensus         2 ~~m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~Iplp-nV~s~iL~kVieyc~~h~~~~~~~~   80 (169)
T 3v7d_A            2 AHMVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVP-NVRSSVLQKVIEWAEHHRDSNFPDE   80 (169)
T ss_dssp             ----CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECT-TCCHHHHHHHHHHHHHTTTCCCCC-
T ss_pred             CCCCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeC-CCCHHHHHHHHHHHHHcccCCCccc
Confidence            45677899999999999999999999999999999866541   1123789999 8999999999999999997642   


Q ss_pred             ------CchhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 025625           85 ------SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL  158 (250)
Q Consensus        85 ------s~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~  158 (250)
                            ....+++||++|++++.++||+||.|||||+|++|+++||++||+||+||||+|||++|||++|||||||++++
T Consensus        81 ~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir  160 (169)
T 3v7d_A           81 DDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR  160 (169)
T ss_dssp             -------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence                  23568999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 025625          159 KN  160 (250)
Q Consensus       159 ~~  160 (250)
                      ++
T Consensus       161 ~e  162 (169)
T 3v7d_A          161 RE  162 (169)
T ss_dssp             TT
T ss_pred             Hh
Confidence            84
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 4e-21
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 5e-19
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 4e-14
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 6e-14
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 7e-11
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 4e-08
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (203), Expect = 4e-21
 Identities = 26/67 (38%), Positives = 45/67 (67%)

Query: 90  KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149
            S+D +F+++D + L E+  AA+ L +KPL+D   + +A +I G++PEEIR  F++ +D 
Sbjct: 2   DSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 61

Query: 150 TEEEKLE 156
           T EE+  
Sbjct: 62  TPEEEAA 68
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.95
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.91
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.88
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.76
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.75
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.8
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.76
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.4e-29  Score=179.31  Aligned_cols=70  Identities=37%  Similarity=0.661  Sum_probs=67.8

Q ss_pred             cchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 025625           89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL  158 (250)
Q Consensus        89 i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~  158 (250)
                      +++||.+|++++...||+|+.|||||+|++|+++||++||++|+||||+|||++|||++|+||||+++++
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999874
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure