Citrus Sinensis ID: 025689

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
ccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHcccccccccccccccccccccccEEEEccHHHEEEEEEHHHHHHcccccHHHHHHHHHHcccEEEEccHHHEEEcHccccHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccc
mgansiqgqSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYdsfnnslggagkplsspvvladMEHRQVKMQTVNSflaetpestEAMVNAKEAGefaavnvpsdvlqsqSSFLAIShlknnwpmkikiesgtNVCHLLLLIAALVSTITYRTALKIRACKleqgynyssSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
mgansiqgqseLEEGIAERKMVSdlsnriddlkvDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNElplrplllVSAFSMLGAYICAITDLTKPT
***************************RIDDLKVDLEWYKEVSRLKNKSYYDSFN***************************************************FAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDL****
****************************IDDLKVDLEWYKEVSRLKNKSYYD***********************HRQVKMQTVNS*****************************************HL*************TNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNY*SSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTK**
**********ELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
**************GI*ERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKP*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
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MGANSIQGQSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFLAISHLKNNWPMKIKIESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAITDLTKPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
255539873 396 conserved hypothetical protein [Ricinus 0.184 0.116 0.565 8e-06
225447366 462 PREDICTED: ankyrin repeat-containing pro 0.489 0.264 0.294 2e-05
297739323 371 unnamed protein product [Vitis vinifera] 0.489 0.328 0.294 2e-05
255539877328 protein binding protein, putative [Ricin 0.273 0.207 0.382 6e-05
>gi|255539873|ref|XP_002511001.1| conserved hypothetical protein [Ricinus communis] gi|223550116|gb|EEF51603.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 197 QLVMAFNSIAFFLSMALLMILFNELPLRPLLLVSAFSMLGAYICAI 242
            L + FNSIAFF S+AL+ IL +ELP++P LL+  FS  GAY+C I
Sbjct: 304 DLFILFNSIAFFTSLALITILTHELPIKPWLLILLFSTTGAYMCLI 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739323|emb|CBI28974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539877|ref|XP_002511003.1| protein binding protein, putative [Ricinus communis] gi|223550118|gb|EEF51605.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
pfam13962114 pfam13962, PGG, Domain of unknown function 6e-07
>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function Back     alignment and domain information 
 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 143 TNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIV--DQHPLFIQLVM 200
               + LL++A L++T+T+             GY            +   +   F    +
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFT-----PPGGYWQDDGGHHAGTPILAGKPRRFKAFFV 59

Query: 201 AFNSIAFFLSMALLMILFNEL-----------PLRPLLLVSAFSMLGAYICAI 242
             N+IAF  S+  +++L   +            L  LL +S  S++ A+    
Sbjct: 60  -SNTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
PF13962113 PGG: Domain of unknown function 99.92
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.07
PHA02741169 hypothetical protein; Provisional 98.68
PHA02736154 Viral ankyrin protein; Provisional 98.67
PHA02741169 hypothetical protein; Provisional 98.67
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 98.61
KOG4412226 consensus 26S proteasome regulatory complex, subun 98.61
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 98.59
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 98.58
PHA02859209 ankyrin repeat protein; Provisional 98.58
PHA02743166 Viral ankyrin protein; Provisional 98.56
KOG0514452 consensus Ankyrin repeat protein [General function 98.55
KOG4412226 consensus 26S proteasome regulatory complex, subun 98.55
KOG0510 929 consensus Ankyrin repeat protein [General function 98.53
PHA02878477 ankyrin repeat protein; Provisional 98.46
PHA02791284 ankyrin-like protein; Provisional 98.41
PHA02743166 Viral ankyrin protein; Provisional 98.41
PHA02884300 ankyrin repeat protein; Provisional 98.4
PHA02791284 ankyrin-like protein; Provisional 98.4
PHA02795437 ankyrin-like protein; Provisional 98.4
PHA02875 413 ankyrin repeat protein; Provisional 98.39
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 98.39
KOG0510 929 consensus Ankyrin repeat protein [General function 98.38
PHA02874 434 ankyrin repeat protein; Provisional 98.37
KOG0512228 consensus Fetal globin-inducing factor (contains a 98.36
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 98.35
PHA02946 446 ankyin-like protein; Provisional 98.32
PHA03095471 ankyrin-like protein; Provisional 98.32
PHA02874434 ankyrin repeat protein; Provisional 98.3
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 98.3
PHA03100480 ankyrin repeat protein; Provisional 98.29
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 98.26
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 98.26
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 98.26
PHA03095 471 ankyrin-like protein; Provisional 98.25
PHA02875 413 ankyrin repeat protein; Provisional 98.23
PHA02989494 ankyrin repeat protein; Provisional 98.23
PHA02878477 ankyrin repeat protein; Provisional 98.22
PHA02859209 ankyrin repeat protein; Provisional 98.22
PHA02736154 Viral ankyrin protein; Provisional 98.19
PF1360630 Ank_3: Ankyrin repeat 98.17
PHA02798 489 ankyrin-like protein; Provisional 98.16
PLN03192823 Voltage-dependent potassium channel; Provisional 98.14
PHA02876682 ankyrin repeat protein; Provisional 98.14
PHA02730 672 ankyrin-like protein; Provisional 98.12
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 98.12
PLN03192823 Voltage-dependent potassium channel; Provisional 98.11
PHA02946 446 ankyin-like protein; Provisional 98.11
PHA02884300 ankyrin repeat protein; Provisional 98.1
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 98.1
KOG0508 615 consensus Ankyrin repeat protein [General function 98.09
PHA02730 672 ankyrin-like protein; Provisional 98.06
PHA02876 682 ankyrin repeat protein; Provisional 98.05
PHA03100 480 ankyrin repeat protein; Provisional 98.05
PHA02798489 ankyrin-like protein; Provisional 98.03
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 97.99
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 97.96
KOG0508 615 consensus Ankyrin repeat protein [General function 97.96
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 97.96
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 97.96
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 97.94
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 97.93
PHA02917661 ankyrin-like protein; Provisional 97.88
PHA02792631 ankyrin-like protein; Provisional 97.86
KOG4214117 consensus Myotrophin and similar proteins [Transcr 97.85
KOG0502296 consensus Integral membrane ankyrin-repeat protein 97.84
KOG0512228 consensus Fetal globin-inducing factor (contains a 97.81
TIGR00870 743 trp transient-receptor-potential calcium channel p 97.79
PHA02917 661 ankyrin-like protein; Provisional 97.77
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 97.77
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 97.74
PHA02989 494 ankyrin repeat protein; Provisional 97.74
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 97.73
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 97.6
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 97.6
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 97.58
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 97.57
PHA02792 631 ankyrin-like protein; Provisional 97.52
PHA02795437 ankyrin-like protein; Provisional 97.42
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 97.41
TIGR00870 743 trp transient-receptor-potential calcium channel p 97.36
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 97.35
KOG4214117 consensus Myotrophin and similar proteins [Transcr 97.34
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 97.34
KOG0514452 consensus Ankyrin repeat protein [General function 97.28
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 97.15
KOG0522 560 consensus Ankyrin repeat protein [General function 96.85
KOG0502296 consensus Integral membrane ankyrin-repeat protein 96.8
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 96.74
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 96.59
KOG0783 1267 consensus Uncharacterized conserved protein, conta 96.39
KOG0705749 consensus GTPase-activating protein Centaurin gamm 96.36
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 95.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 95.63
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 95.39
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 95.22
KOG0521785 consensus Putative GTPase activating proteins (GAP 94.11
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 92.66
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 92.0
KOG0522 560 consensus Ankyrin repeat protein [General function 91.78
KOG2505591 consensus Ankyrin repeat protein [General function 90.71
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 90.0
KOG2384223 consensus Major histocompatibility complex protein 89.91
PF1360630 Ank_3: Ankyrin repeat 88.35
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 87.3
KOG0520 975 consensus Uncharacterized conserved protein, conta 86.07
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 83.62
KOG0511 516 consensus Ankyrin repeat protein [General function 81.56
>PF13962 PGG: Domain of unknown function Back     alignment and domain information 
Probab=99.92  E-value=1.1e-25  Score=179.21  Aligned_cols=101  Identities=23%  Similarity=0.278  Sum_probs=85.5

Q ss_pred             ccccccchhhHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCCCccchhhccCccccchhhhhhhHHHHHHHHHHHHHh
Q 025689          139 IESGTNVCHLLLLIAALVSTITYRTALKIRACKLEQGYNYSSSLISICQIVDQHPLFIQLVMAFNSIAFFLSMALLMILF  218 (249)
Q Consensus       139 ~~~~~~~r~~llVVAtLIATvTFqA~l~pP~~GG~~~~~~~~~~~~G~~i~~~~~~~F~~F~~~NtiaF~~Sl~~i~lL~  218 (249)
                      +||.+|+||+++|||+||||+|||||+|||  ||+||++.    ..|++++..++..|+.|+++|+++|++|+.++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpP--GG~~~~~~----~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~   74 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPP--GGYWQDDD----DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI   74 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcccccc----CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999  99998762    238999876666899999999999999999888887


Q ss_pred             cCcc--h----------HHHHHHHHHHHHHHHHHHHhhc
Q 025689          219 NELP--L----------RPLLLVSAFSMLGAYICAITDL  245 (249)
Q Consensus       219 s~~p--~----------~~~l~i~l~sm~~aY~~a~~~i  245 (249)
                      ++++  .          ...+++++.+|.+||+++++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   75 SGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5441  1          2346788999999999998764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 38/243 (15%), Positives = 63/243 (25%), Gaps = 83/243 (34%)

Query: 40  KEVSRLKNKSYYDSFNNSL-----GGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPES 94
           +   +L+          ++      G+GK  +    +A       K+Q    F       
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGK--T---WVALDVCLSYKVQCKMDF------- 182

Query: 95  TEAMVNAKEAGEF----AAVNVPSDVLQSQSSFLAISHLKNNW--------PMKIKIESG 142
                       F       N P  VL+     L    +  NW         +K++I S 
Sbjct: 183 ----------KIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 143 TN-VCHLL--------LLIAALVSTITYRTALKIRACKLEQGYNYSSSLI-----SICQI 188
              +  LL        LL+   V       A  +  CK+         L+      +   
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKI---------LLTTRFKQVTDF 280

Query: 189 VD----QHPLFIQLVMAF---NSIAFFLSMALLMILFNELPLR-----PLLLVSAFSMLG 236
           +      H       M        +  L    L     +LP       P  L    S++ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRL----SIIA 334

Query: 237 AYI 239
             I
Sbjct: 335 ESI 337

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 99.23
4gpm_A169 Engineered protein OR264; de novo protein, structu 99.12
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 99.1
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.09
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 99.04
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 99.04
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 99.01
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.99
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 98.96
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.95
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.95
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 98.95
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 98.94
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.91
4gpm_A169 Engineered protein OR264; de novo protein, structu 98.91
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 98.9
3deo_A183 Signal recognition particle 43 kDa protein; chloro 98.9
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.9
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 98.9
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.89
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.88
2rfa_A232 Transient receptor potential cation channel subfa 98.88
1sw6_A327 Regulatory protein SWI6; transcription regulation, 98.87
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 98.87
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.87
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 98.87
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 98.87
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.86
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 98.85
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 98.85
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 98.85
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.84
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.84
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 98.84
3deo_A183 Signal recognition particle 43 kDa protein; chloro 98.84
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.84
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.83
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.83
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.83
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.82
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 98.82
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 98.82
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.82
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.82
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.81
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 98.81
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.81
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.81
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.81
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 98.8
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 98.8
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 98.79
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 98.78
2etb_A256 Transient receptor potential cation channel subfam 98.78
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 98.78
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 98.77
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.77
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.77
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 98.76
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 98.76
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 98.76
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 98.76
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 98.76
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.75
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 98.74
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 98.73
2pnn_A273 Transient receptor potential cation channel subfa 98.73
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 98.73
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.72
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 98.72
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 98.72
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 98.71
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 98.71
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 98.7
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 98.7
3hra_A201 Ankyrin repeat family protein; structural protein; 98.7
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.69
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 98.69
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 98.69
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 98.68
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 98.68
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 98.68
2etb_A256 Transient receptor potential cation channel subfam 98.67
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 98.67
3utm_A351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 98.67
2rfa_A232 Transient receptor potential cation channel subfa 98.66
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 98.63
2pnn_A273 Transient receptor potential cation channel subfa 98.63
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 98.62
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 98.62
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 98.62
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 98.61
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 98.61
3hra_A201 Ankyrin repeat family protein; structural protein; 98.6
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 98.57
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 98.57
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 98.55
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.53
1n11_A 437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 98.53
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 98.52
3kea_A285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 98.46
1sw6_A327 Regulatory protein SWI6; transcription regulation, 98.46
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 98.44
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 98.43
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 98.35
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 98.34
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 98.34
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 98.28
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 98.26
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 98.2
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 98.18
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 98.0
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 97.89
2aja_A376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 97.42
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
Probab=99.23  E-value=6.3e-12  Score=92.05  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHhhccchhHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCchhhHHHHhhcchhHHHHHhhCCCC
Q 025689           14 EGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPE   93 (249)
Q Consensus        14 ~~~~~~~~~~~~~n~~ealkvLv~~~~~~~~~~~~~~~~~~lN~~~~~~kD~~GNT~LH~LAa~~~~~~iv~~Ll~~~~~   93 (249)
                      +|.+.+ +.|+++++.|.++.|++..             ..+|     .+|.+|+|||| .|+..++.+++++|+..   
T Consensus         1 ~g~t~L-~~A~~~~~~~~v~~Ll~~g-------------~~~n-----~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~---   57 (93)
T 1n0q_A            1 NGRTPL-HLAARNGHLEVVKLLLEAG-------------ADVN-----AKDKNGRTPLH-LAARNGHLEVVKLLLEA---   57 (93)
T ss_dssp             --CCHH-HHHHHHTCHHHHHHHHHTT-------------CCTT-----CCCTTSCCHHH-HHHHTTCHHHHHHHHHT---
T ss_pred             CCCcHH-HHHHHcCCHHHHHHHHHcC-------------CCCc-----ccCCCCCCHHH-HHHHcCCHHHHHHHHHc---
Confidence            355666 8899999999999999743             3488     99999999999 99999999999999986   


Q ss_pred             cchhcccccccCCCCccCCC
Q 025689           94 STEAMVNAKEAGEFAAVNVP  113 (249)
Q Consensus        94 ~~~v~vn~~N~~G~TaLDI~  113 (249)
                        ++++|.+|++|.|||+++
T Consensus        58 --ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A           58 --GADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --TCCTTCCCTTSCCHHHHH
T ss_pred             --CCCCCccCCCCCCHHHHH
Confidence              479999999999999994
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.15
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.1
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.05
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.04
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.01
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.0
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.0
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 98.99
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 98.9
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 98.9
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 98.87
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 98.84
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 98.83
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 98.82
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 98.81
d1n11a_ 408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 98.79
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 98.77
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 98.76
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 98.65
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 98.64
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 98.6
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 98.59
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 98.57
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 98.56
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 98.54
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 98.47
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 98.46
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 98.43
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 98.37
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 98.37
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 98.33
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 98.31
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 98.3
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 98.28
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 98.22
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 98.21
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 98.18
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 98.1
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.2e-11  Score=92.74  Aligned_cols=68  Identities=13%  Similarity=0.027  Sum_probs=38.3

Q ss_pred             HHHhhccchhHHHHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCchhhHHHHhhcchhHHHHHhhCCCCcchhccc
Q 025689           21 MVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKMQTVNSFLAETPESTEAMVN  100 (249)
Q Consensus        21 ~~~~~~n~~ealkvLv~~~~~~~~~~~~~~~~~~lN~~~~~~kD~~GNT~LH~LAa~~~~~~iv~~Ll~~~~~~~~v~vn  100 (249)
                      +.|+++|+.|.+|.|++..             .-+|     .+|.+|+|||| .|+..++.+++++|+..     ++++|
T Consensus         7 ~~A~~~g~~~~v~~Ll~~g-------------~d~n-----~~~~~g~t~lh-~A~~~~~~~~~~~ll~~-----g~din   62 (118)
T d1myoa_           7 MWALKNGDLDEVKDYVAKG-------------EDVN-----RTLEGGRKPLH-YAADCGQLEILEFLLLK-----GADIN   62 (118)
T ss_dssp             HHHHHTTCHHHHHHHHTTT-------------CCCC-----CCSSSSCCTTH-HHHHHSTTTHHHHHHHS-----SCTTT
T ss_pred             HHHHHCCCHHHHHHHHHhh-------------hccc-----ccccccccccc-ccccccccccccccccc-----cceee
Confidence            5566666666666666422             1245     55555555555 55555555555555554     24555


Q ss_pred             ccccCCCCccCC
Q 025689          101 AKEAGEFAAVNV  112 (249)
Q Consensus       101 ~~N~~G~TaLDI  112 (249)
                      .+|.+|.|||++
T Consensus        63 ~~d~~g~tpLh~   74 (118)
T d1myoa_          63 APDKHHITPLLS   74 (118)
T ss_dssp             CCSSSCSCHHHH
T ss_pred             ecccccccchhh
Confidence            555555555555
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure