Citrus Sinensis ID: 025697

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGVQFIDFLSVRNS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHcccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mctrghwrpaeDEKLRELVERYGPHNWNAIAEKLqgrsgkscrlrwfnqldprinrspfteEEEERLLASHRIHGNRWAVIARLfpgrtdnavknHWHVIMARRCRERSRLYAKRAAQTFlndqksssssrpnhhaqtgctdletkNNNLASFVEIFRgrfhystyphnqLQFFRELCdgntshlgskkedknqpvefydflqvntdstkseVIDTARRDDEEVDQEARVqrnassgvqfIDFLSVRNS
Flexible Loop (DISEMBL)
mctrghwrpaedeKLRELVERYGPHNWNAIAEklqgrsgkscrLRWFnqldprinrspfTEEEEERLLashrihgnrWAVIARLFPgrtdnavknhwHVIMARRCRERSRLYAKRAAQTFlndqksssssrpnHHAQtgctdletknNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLgskkedknqpVEFYDflqvntdstksevidTARRDDEEVDqearvqrnassgvqfidflsvrns
Low Complexity Region (SEG)
MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGVQFIDFLSVRNS
Disordered region (IsUnstruct)
*****************LVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRI************LLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKR******************************KNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGN***************EFYDFLQV***********************************FIDF******
Disordered Region (DISOPRED)
MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIM******************************************************************************************************************************************FIDFLSVR**
Disordered Region (DISEMBL)
**********EDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSP*********LASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQT*******************GCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDT****************NASSGVQFIDFLSVRNS
Disordered Region (DISPRO)
***RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSR**************************************************************FFREL*****SHL*******NQPVEFYD***********************************SGVQFIDFLSV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGVQFIDFLSVRNS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.409	0.334	0.568	1e-31
P52551	743	Myb-related protein B OS=	N/A	no	0.461	0.154	0.486	5e-29
P10242	640	Transcriptional activator	no	no	0.602	0.234	0.391	5e-28
Q05935	728	Myb-related protein A OS=	N/A	no	0.506	0.173	0.430	6e-28
P52550	757	Myb-related protein A OS=	yes	no	0.526	0.173	0.419	6e-28
P46200	640	Transcriptional activator	yes	no	0.534	0.207	0.410	6e-28
Q03237	686	Myb-related protein B OS=	no	no	0.518	0.188	0.432	7e-28
P06876	636	Transcriptional activator	yes	no	0.465	0.182	0.470	8e-28
Q08759	624	Transcriptional activator	N/A	no	0.457	0.182	0.474	2e-27
P51960	751	Myb-related protein A OS=	no	no	0.538	0.178	0.417	2e-27

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 74/102 (72%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W P EDE+LR LV +YGP NW  I++ + GRSGKSCRLRW NQL P++   PF+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           +E +  +H   GN+WA IARL  GRTDNAVKNHW+  + R+C
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 78/115 (67%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   EDEK+ ELV++YG  +W  IA++L+GR GK CR RW N L+P + +S +TEEE
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQ 118
           +  +  +H++ GNRWA IA+L PGRTDNAVKNHW+  + R+      L  K + Q
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQ 197

Xenopus laevis (taxid: 8355)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC------RERSRLYAKRAA 117
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+       +E S+      A
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVA 211

Query: 118 QTFLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASF 153
            +F  +      ++    AQ   T   T NN+ + +
Sbjct: 212 TSFQKNSHLMGFAQAPPTAQLPATGQPTVNNDYSYY 247

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 11/137 (8%)

Query: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62
            +G W   ED+++ ELV +YGP  W+ IA+ L+GR GK CR RW N L+P + +S +TEE
Sbjct: 85  VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEE 144

Query: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLN 122
           E+  + ++H+  GNRWA IA+L PGRTDN++KNHW+  M R+  +   L      Q  +N
Sbjct: 145 EDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQEGYL------QDLMN 198

Query: 123 DQKSS-----SSSRPNH 134
             + S     S + PNH
Sbjct: 199 CDRPSKLQAKSCAAPNH 215

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 12/143 (8%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + +S +TE E
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAE 146

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLND 123
           +  +  +H+  GNRWA IA+L PGRTDN++KNHW+  M R+  +          + +L D
Sbjct: 147 DRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ----------EGYLQD 196

Query: 124 QKSSSSSRPNHH--AQTGCTDLE 144
              SSS R      AQ  C  +E
Sbjct: 197 GTKSSSERTGSSTLAQKPCVTME 219

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 18/151 (11%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLND 123
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+  +   L            
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYL------------ 199

Query: 124 QKSSSSSRPNHHAQTGCTDLETKNNNLASFV 154
           Q+SS +S+P        T    KN++L  F 
Sbjct: 200 QESSKASQP------AVTTSFQKNSHLMGFT 224

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62
            +G W   ED+K+ ELV++YG   W  IA+ L+GR GK CR RW N L+P + +S +TEE
Sbjct: 82  VKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 141

Query: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF-- 120
           E+  +  +H++ GNRWA IA+L PGRTDNAVKNHW+  + R+      L   + +Q    
Sbjct: 142 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLNETKESQPLYL 201

Query: 121 ---LNDQKSSSSSR 131
              ++D +S S +R
Sbjct: 202 LVEVDDNESQSGTR 215

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 80/117 (68%), Gaps = 1/117 (0%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLY-AKRAAQT 119
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+  +   L    +A+QT
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQT 208

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 2/116 (1%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV +YGP  W+ IA+ L+GR GK CR RW N L+P + +S +TEEE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQT 119
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R  +E    Y + +++T
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR--KEEQEGYLQNSSKT 202

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 12/146 (8%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + +S +TEEE
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLND 123
           +  +  +H+  GNRWA IA+L PGRTDN++KNHW+  M R+  +          + +L D
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ----------EGYLQD 196

Query: 124 QKSS--SSSRPNHHAQTGCTDLETKN 147
              S  SSS+  H        L+T+N
Sbjct: 197 GIKSERSSSKLQHKPCATMDHLQTQN 222

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
224120416	243	predicted protein [Populus trichocarpa]	0.947	0.971	0.688	1e-88
225456240	221	PREDICTED: myb-related protein B [Vitis	0.883	0.995	0.678	4e-88
225626257	236	MYB transcription factor [Populus tricho	0.935	0.987	0.678	2e-86
147859366	371	hypothetical protein VITISV_022615 [Viti	0.803	0.539	0.697	1e-84
224125926	213	predicted protein [Populus trichocarpa]	0.851	0.995	0.634	5e-81
224092956	247	predicted protein [Populus trichocarpa]	0.951	0.959	0.640	1e-80
356529453	237	PREDICTED: transcription factor WER-like	0.923	0.970	0.628	1e-77
224133376	241	predicted protein [Populus trichocarpa]	0.959	0.991	0.608	2e-77
356560079	234	PREDICTED: transcriptional activator Myb	0.911	0.970	0.624	3e-76
357499541	238	Myb-like protein [Medicago truncatula] g	0.907	0.949	0.596	1e-72

>gi|224120416|ref|XP_002318324.1| predicted protein [Populus trichocarpa] gi|222858997|gb|EEE96544.1| predicted protein [Populus trichocarpa] gi|225626259|gb|ACN97179.1| MYB transcription factor [Populus trichocarpa]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 189/247 (76%), Gaps = 11/247 (4%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCTRGHWRPAEDEKL+ELVE+YGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWA+IAR FPGRTDNAVKNHWHVIMARR RERSRL+AKRAAQT 
Sbjct: 61  EEEEERLLASHRIHGNRWAIIARFFPGRTDNAVKNHWHVIMARRYRERSRLHAKRAAQTL 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDG 180
           +ND K SS     H       D ET+  N +SF + +  +  Y  YP     +    C  
Sbjct: 121 VNDNKLSSKQDHMH------MDCETR--NFSSFSKKYCEK--YGQYPMVTHSYLPAFCKE 170

Query: 181 NTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSG-VQ 239
             +   S  ED+++P+EFYDFLQVNTDS KSEVID ARRDDEEVDQ+  ++ N S   V 
Sbjct: 171 FYNEDPSHCEDQSRPIEFYDFLQVNTDSNKSEVIDNARRDDEEVDQQEALENNQSKADVP 230

Query: 240 FIDFLSV 246
           FIDF SV
Sbjct: 231 FIDFFSV 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456240|ref|XP_002279279.1| PREDICTED: myb-related protein B [Vitis vinifera] gi|297734369|emb|CBI15616.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 169/249 (67%), Positives = 189/249 (75%), Gaps = 29/249 (11%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCTRGHWRPAEDEKLRELVER+GPHNWNAIAEKL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE+S+ YAKRAAQ++
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSW 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDG 180
           +N++K  S S+P+     GC        NL+S+VE                      C  
Sbjct: 121 INERK--SISKPDRQQMIGC-----DTRNLSSYVEN---------------------CYE 152

Query: 181 NTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGVQF 240
           N  H     ED+ QPVEFYDFL VNTDS +SEVID ARRDDEEV+QEA +   + +GV F
Sbjct: 153 NMIHCTKMLEDRTQPVEFYDFLNVNTDSNRSEVIDHARRDDEEVEQEA-MDHQSKAGVPF 211

Query: 241 IDFLSVRNS 249
           IDFLSV +S
Sbjct: 212 IDFLSVGSS 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225626257|gb|ACN97178.1| MYB transcription factor [Populus trichocarpa]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/249 (67%), Positives = 195/249 (78%), Gaps = 16/249 (6%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCTRGHWRPAEDEKL+ELVE+YGPHNWNAIAEKL GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR RERSRL+AKR AQ  
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQAL 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRF-HYSTYPHNQL-QFFRELC 178
           +N+QK SS        Q  C   ET+  + +SFV+ +  +F  Y    H+ L  F++E  
Sbjct: 121 VNEQKFSSK----QDMQINC---ETR--SFSSFVKKYCEKFGQYPLITHSYLPAFWKEFY 171

Query: 179 DGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVD-QEARVQRNASSG 237
           + + S+     ED+N+P+EFYDFLQVNT+S KSEVID ARR+DEEVD QE  ++  + +G
Sbjct: 172 NDDLSNC----EDQNRPIEFYDFLQVNTESNKSEVIDNARREDEEVDQQEVILEHQSKAG 227

Query: 238 VQFIDFLSV 246
           V FIDF S 
Sbjct: 228 VPFIDFFSA 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859366|emb|CAN83952.1| hypothetical protein VITISV_022615 [Vitis vinifera]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 175/228 (76%), Gaps = 28/228 (12%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCTRGHWRPAEDEKLRELVER+GPHNWNAIAEKL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE+S+ YAKRAAQ++
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSW 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDG 180
           +N++K  S S+P+     GC        NL+S+VE                      C  
Sbjct: 121 INERK--SISKPDRQQMIGC-----DTRNLSSYVEN---------------------CYE 152

Query: 181 NTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEA 228
           N  H     ED+ QPVEFYDFL VNTDS +SEVID ARRDDEEV+QEA
Sbjct: 153 NMIHCTKMLEDRTQPVEFYDFLNVNTDSNRSEVIDHARRDDEEVEQEA 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125926|ref|XP_002329751.1| predicted protein [Populus trichocarpa] gi|222870659|gb|EEF07790.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 175/246 (71%), Gaps = 34/246 (13%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCTRGHWRPAEDEKL+ELVE+YGPHNWNAIAEKL GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR RERSRL+AKR AQ  
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQAL 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDG 180
           +N+QK SS      + +T             +++ I                        
Sbjct: 121 VNEQKFSSKQDMQINCETRSFSSFLLLLMFLTYMAI------------------------ 156

Query: 181 NTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVD-QEARVQRNASSGVQ 239
                     D+N+P+EFYDFLQVNT+S KSEVID ARR+DEEVD QE  ++  + +GV 
Sbjct: 157 ---------ADQNRPIEFYDFLQVNTESNKSEVIDNARREDEEVDQQEVILEHQSKAGVP 207

Query: 240 FIDFLS 245
           FIDF S
Sbjct: 208 FIDFFS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092956|ref|XP_002309771.1| predicted protein [Populus trichocarpa] gi|222852674|gb|EEE90221.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/253 (64%), Positives = 189/253 (74%), Gaps = 16/253 (6%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           M +RGHWR AEDEKL ELVE+YGPHNWN+IAEKLQGRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MSSRGHWRLAEDEKLLELVEQYGPHNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLA HRIHGN+WAVIA+ FPGRTDNAVKNHWHVIMARRCRERS+++AKRA+ + 
Sbjct: 61  EEEEERLLACHRIHGNKWAVIAKQFPGRTDNAVKNHWHVIMARRCRERSKIHAKRASPSL 120

Query: 121 L-NDQKSSSSSRPNHHAQTGCTDLETKNNNLASFV----EIFRGRFHYSTYPHNQLQFFR 175
           L N+QK S S++          + E + NN  SFV    E +   +H+  +  N     +
Sbjct: 121 LVNEQKPSFSNQ-----DVRIMNCEPR-NNAPSFVHKYFESYCDHYHH-PFTRNYTSICK 173

Query: 176 ELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNAS 235
           +L   N SH     E KNQP+EFYDFLQV T+S+KSEVID ARRDD EVDQEA+    + 
Sbjct: 174 DLYSQNPSHC----EGKNQPLEFYDFLQVKTESSKSEVIDNARRDDVEVDQEAKELPKSR 229

Query: 236 SGVQFIDFLSVRN 248
           +G  FIDFLS  N
Sbjct: 230 AGFPFIDFLSAGN 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529453|ref|XP_003533306.1| PREDICTED: transcription factor WER-like [Glycine max]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/250 (62%), Positives = 177/250 (70%), Gaps = 20/250 (8%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIAEKL+GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIAR FPGRTDNAVKNHWHV+MAR  RERS+ Y+ +     
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKNYSPKQPLFP 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYP--HNQLQF-FREL 177
            N Q                 DLET    + SFV+ +  ++ +   P  H+  QF  +  
Sbjct: 121 PNLQ----------------VDLETNFETIPSFVDKYYEKYSHPCVPLTHSSFQFPTKNF 164

Query: 178 CDGNTSHLGSK-KEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASS 236
              + S  GS    D  + VEFYDFLQVNTDS KSEV D ARRD+EEV Q+A   +N  +
Sbjct: 165 YFQDPSSAGSTVPRDNCESVEFYDFLQVNTDSNKSEVTDNARRDEEEVSQDAVGMKNKDN 224

Query: 237 GVQFIDFLSV 246
           GV FIDFLS 
Sbjct: 225 GVPFIDFLST 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133376|ref|XP_002328027.1| predicted protein [Populus trichocarpa] gi|222837436|gb|EEE75815.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 178/250 (71%), Gaps = 11/250 (4%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           M TRGHWRPAEDEKLR+LV++YGPHNWN+IAEKLQG+SGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MSTRGHWRPAEDEKLRKLVDQYGPHNWNSIAEKLQGKSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAA-QT 119
           EEEEERLLA  +IHGN+WAVIA+ FPGRTDNAVKNHWH+IMAR+CRERSR++AKRAA Q 
Sbjct: 61  EEEEERLLACQQIHGNKWAVIAKQFPGRTDNAVKNHWHIIMARKCRERSRIHAKRAASQA 120

Query: 120 FLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCD 179
            L ++++ S S  +      C       +    F E +   +H        L +    C+
Sbjct: 121 LLVNEQTHSFSNQDVMRIVNCEPRNLAPSFFHKFCESYCDCYHRPFC----LNYPTSFCN 176

Query: 180 GNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGVQ 239
            NTSH   K      P+EFYDFLQV TDS+KSE +D ARRDD EVDQEAR      +   
Sbjct: 177 ENTSHHEGK------PLEFYDFLQVKTDSSKSEALDNARRDDVEVDQEARELHQRKANFP 230

Query: 240 FIDFLSVRNS 249
           FIDFLS  NS
Sbjct: 231 FIDFLSAGNS 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560079|ref|XP_003548323.1| PREDICTED: transcriptional activator Myb-like [Glycine max]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/250 (62%), Positives = 178/250 (71%), Gaps = 23/250 (9%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKLRELVE YGPHNWNAIAEKL+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERLLASHRIHGNRWAVIAR FPGRTDNAVKNHWHV+MAR  RERS++   +    F
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKINNPKLQPLF 120

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYS--TYPHNQLQF-FREL 177
             + K                DLE     + SFVE +  ++ +   T  H+  QF  ++ 
Sbjct: 121 APNLKD---------------DLEA----IPSFVEKYYEKYSHPCVTLTHSSFQFPGKKF 161

Query: 178 CDGNTSHLGSK-KEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASS 236
              + S  GS     K+Q VEFYDFLQVNTDS +SEV D ARRDDEEV Q+A  Q+N  +
Sbjct: 162 YFQDPSSAGSTVPPGKSQSVEFYDFLQVNTDSNESEVTDNARRDDEEVSQDAVGQKNKDN 221

Query: 237 GVQFIDFLSV 246
           GV FIDFLS 
Sbjct: 222 GVPFIDFLST 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499541|ref|XP_003620059.1| Myb-like protein [Medicago truncatula] gi|355495074|gb|AES76277.1| Myb-like protein [Medicago truncatula]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/248 (59%), Positives = 171/248 (68%), Gaps = 22/248 (8%)

Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRP+EDEKLRELVE YGPHNWNAIAE L+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFT 60

Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
           EEEEERL+ SHRIHGNRWAVIAR FPGRTDNAVKNHWHV+MAR  RER ++YAK      
Sbjct: 61  EEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPL--- 117

Query: 121 LNDQKSSSSSRPNHHAQTGCTDLET--KNNNLASFVEIFRGRFHYSTYPHNQLQFFRELC 178
                       +HH      D +T  +  NL SFVE +  + ++    H+  QF +   
Sbjct: 118 ------------DHHTIFSSNDHQTNFERTNLHSFVEKYHEKHNHPRVSHSSFQFPKFHF 165

Query: 179 DGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNASSGV 238
            G  S        + Q +EFYDFLQV  DS KSEV D ARRDDEEV+Q+    +N  + V
Sbjct: 166 HGPNS---CSTMLQVQSIEFYDFLQV--DSNKSEVTDNARRDDEEVNQDVMELKNKENNV 220

Query: 239 QFIDFLSV 246
           QFIDFLS 
Sbjct: 221 QFIDFLST 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2206910	243	MYB54 "myb domain protein 54"	0.939	0.962	0.570	1.5e-67
TAIR|locus:2030903	249	MYB52 "myb domain protein 52"	0.935	0.935	0.569	2.4e-67
TAIR|locus:2200635	359	MYB117 "myb domain protein 117	0.518	0.359	0.704	1.4e-50
TAIR|locus:2007136	330	MYB105 "myb domain protein 105	0.477	0.360	0.756	2.3e-48
TAIR|locus:2175931	323	MYB56 "myb domain protein 56"	0.530	0.408	0.666	4.7e-48
TAIR|locus:2087017	305	MYB110 "myb domain protein 110	0.461	0.377	0.686	1.2e-45
TAIR|locus:2119171	250	MYB69 "myb domain protein 69"	0.465	0.464	0.731	2.1e-45
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.405	0.253	0.544	1.3e-32
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.409	0.330	0.519	2.6e-32
TAIR|locus:2164900	190	MYB89 "myb domain protein 89"	0.421	0.552	0.580	9.8e-32

TAIR|locus:2206910 MYB54 "myb domain protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 145/254 (57%), Positives = 173/254 (68%)

Query:     1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
             MC+RGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct:     3 MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query:    61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERS--RLYAKRAAQ 118
             EEEEERLLA+HRIHGNRW++IARLFPGRTDNAVKNHWHVIMARR R+ S  RL     + 
Sbjct:    63 EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query:   119 TFL--NDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPH-NQLQFFR 175
             + L  ++Q   SS   NH+  +     + K    A F+      F Y  + H N L F +
Sbjct:   123 SSLMASEQIMMSSGGYNHNYSSD----DRKKIFPADFIN-----FPYK-FSHINHLHFLK 172

Query:   176 ELCDGNTSHLGSKKEDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEEVDQEARVQRNAS 235
             E   G  + L  K     +P+EFY+FLQVNTDS KSE+ID      +  D + + +    
Sbjct:   173 EFFTGKIA-LNHKANQSKKPMEFYNFLQVNTDSNKSEIIDQDSGQSKRSDSDTKHE---- 227

Query:   236 SGVQFIDFLSVRNS 249
             S V F DFLSV NS
Sbjct:   228 SHVPFFDFLSVGNS 241

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2030903 MYB52 "myb domain protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 147/258 (56%), Positives = 174/258 (67%)

Query:     1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
             MC+RGHWRPAEDEKLRELVE++GPHNWNAIA+KL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct:     2 MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query:    61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
             EEEEERLLASHRIHGNRW+VIAR FPGRTDNAVKNHWHVIMARR RERS+L  +      
Sbjct:    62 EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLG--- 118

Query:   121 LNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPH-NQLQFFRELCD 179
              +D   +++    ++    C     K   LA+   I    F Y  + H N  Q  +E   
Sbjct:   119 -HDGTVAATGMIGNYKD--CD----KERRLATTTAI---NFPYQ-FSHINHFQVLKEFLT 167

Query:   180 GNTSHLGSKK-------EDKNQPVEFYDFLQVNTDSTKSEVIDTARRDDEE-VDQEARVQ 231
             G      S         +   +P+EFY+FLQVNTDS   E+ID +R+D+EE VDQ  R+ 
Sbjct:   168 GKIGFRNSTTPIQEGAIDQTKRPMEFYNFLQVNTDSKIHELIDNSRKDEEEDVDQNNRIP 227

Query:   232 RNASSGVQFIDFLSVRNS 249
                 + V F DFLSV NS
Sbjct:   228 NE--NCVPFFDFLSVGNS 243

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2200635 MYB117 "myb domain protein 117" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 93/132 (70%), Positives = 107/132 (81%)

Query:     4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
             RGHWRPAED KL+ELV  YGP NWN IAEKLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct:    98 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query:    64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLND 123
             EERL+ +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ RE S  Y +R   +  N 
Sbjct:   158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSN-NP 216

Query:   124 QKSSSSSRPNHH 135
              K   ++  NHH
Sbjct:   217 LKPHLTN--NHH 226

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2007136 MYB105 "myb domain protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 90/119 (75%), Positives = 102/119 (85%)

Query:     3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62
             +RGHWRPAED KL+ELV  YGP NWN IAEKLQGRSGKSCRLRWFNQLDPRINR  FTEE
Sbjct:   106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query:    63 EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFL 121
             EEERL+ +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+ RE+S  Y +R     L
Sbjct:   166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSL 224

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

TAIR|locus:2175931 MYB56 "myb domain protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 90/135 (66%), Positives = 105/135 (77%)

Query:     1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
             +C+RGHWRP ED KL+ELV ++GP NWN I+  L GRSGKSCRLRWFNQLDPRIN+  FT
Sbjct:    90 VCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFT 149

Query:    61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
             EEEE RLLA+HR +GN+WA+I+RLFPGRTDNAVKNHWHVIMARR RE  R   ++   T 
Sbjct:   150 EEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRESQR-QRQQPPPTL 208

Query:   121 LNDQKS--SSSSRPN 133
               D +   SSS R N
Sbjct:   209 SRDAEMTVSSSCRYN 223

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087017 MYB110 "myb domain protein 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 79/115 (68%), Positives = 98/115 (85%)

Query:     1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
             +C+RGHWR +ED +L ELV  YGP NWN IAE +QGR+GKSCRLRWFNQLDPRIN+  F+
Sbjct:    64 VCSRGHWRISEDTQLMELVSVYGPQNWNHIAESMQGRTGKSCRLRWFNQLDPRINKRAFS 123

Query:    61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKR 115
             +EEEERLLA+HR  GN+WA+IA+LF GRTDNA+KNHWHV+MAR+ R++S  Y +R
Sbjct:   124 DEEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLMARKMRQQSSSYVQR 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2119171 MYB69 "myb domain protein 69" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 87/119 (73%), Positives = 97/119 (81%)

Query:     2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
             C RGHWRP ED+ LR+LVE+YGP NWN IA+ L GRSGKSCRLRW+NQLDP I + PFTE
Sbjct:    17 CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query:    62 EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTF 120
             EEEERLL +HRI GNRWA IARLFPGRTDNAVKNH+HVIMARR RE    ++  A  TF
Sbjct:    77 EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKREN---FSSTATSTF 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 55/101 (54%), Positives = 75/101 (74%)

Query:     4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
             +G W   ED  L +LV + GP NW+ IA  + GRSGKSCRLRW NQLDP + R PF++EE
Sbjct:    56 KGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSDEE 115

Query:    64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104
             +  ++++H +HGN+WAVIA+L  GRTDNA+KNHW+  + R+
Sbjct:   116 DRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRK 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 53/102 (51%), Positives = 74/102 (72%)

Query:     4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
             +G W P ED+ L+ LV+++GP NW+ I++ + GRSGKSCRLRW NQL P +    FT EE
Sbjct:    13 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRGFTAEE 72

Query:    64 EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
             ++ ++ +H   GN+WA IARL  GRTDNA+KNHW+  + R+C
Sbjct:    73 DDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2164900 MYB89 "myb domain protein 89" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 61/105 (58%), Positives = 81/105 (77%)

Query:     5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEE 64
             GHW  +ED KL+ELV  +GP NW  I EK++ R+  SCR RWFNQLDP+IN+  FT+EEE
Sbjct:    57 GHWTLSEDLKLKELVAVFGPQNWKFIGEKMEPRTSLSCRQRWFNQLDPKINKRNFTDEEE 116

Query:    65 ERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERS 109
             E+LL +H ++GN+W+ IA+LF  RTD+AVKNHWH +M R  R++S
Sbjct:   117 EKLLRAHILYGNKWSKIAKLFNRRTDHAVKNHWHSLMNRIIRKQS 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-24
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-23
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-19
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-10
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	7e-05
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	4e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 99.7 bits (248), Expect = 4e-24
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQG--RSGKSCRLRWFNQLDPRINRSPFTE 61
           +G W P EDEKL   + +YG   W+++  K  G  R GKSCRLRW N L P + R  F++
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 62  EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
           +EE  ++  H + GNRW+ IA   PGRTDN +KN W+  + ++ R+R
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 94.0 bits (233), Expect = 4e-23
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQG-RSGKSCRLRWFNQLDPRINRSPFTEE 62
           RG W   EDE L   +++ G   W ++ ++    R GKSCRLRW N L P + R   T +
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104
           EE+ +L  HR+ GNRW++IA   PGRTDN +KN+W+  + ++
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 85.6 bits (212), Expect = 4e-19
 Identities = 32/93 (34%), Positives = 53/93 (56%)

Query: 5   GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEE 64
           G W+  EDE L+ LV++ GP+NW+ +A  L   +GK    RW N L+P++ +  ++EEE+
Sbjct: 21  GSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEED 80

Query: 65  ERLLASHRIHGNRWAVIARLFPGRTDNAVKNHW 97
           E+L+   +  G +W+ IA     RT       +
Sbjct: 81  EQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEER 66
          W   EDEKL +LVE+YG  +W  IAE+L GR+  +CR RW  +L P+ +R P+T+EE++R
Sbjct: 1  WTEEEDEKLLKLVEKYGN-DWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 67 L 67
          L
Sbjct: 59 L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.2 bits (165), Expect = 3e-15
 Identities = 23/47 (48%), Positives = 30/47 (63%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50
          RG W P EDE L E V+++G  NW+ IA+ L GR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 56  RSPFTEEEEERLLASHRIHGNR-WAVIARLFPGRTDNAVKNHWHVIM 101
           R P+T EE+E L+ + + HGN  W+ IA+  PGRTDN  KN W+  +
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 60.7 bits (148), Expect = 1e-12
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   EDE L ELV++YG +NW  IA++L GR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN 48
          W   EDE L E V++YG +NW  IA++L GR+ K CR RW N
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 56  RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMAR 103
           +  +TEEE+E L+   + +G N W  IA+  PGRT    +  W  ++  
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 58 PFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
          P+TEEE+E LL + + +G N W  IA+  PGRT    +  W 
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 52 PRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDN 91
          P I ++ +T EE+E+LL   ++   +W  IA +  GRT  
Sbjct: 1  PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 59  FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100
           +TEEE+E+LL     +GN W  IA    GRT +A ++ W   
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRK 41

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEK---LQGRSGKSCRLRWFN 48
          W   EDE L E VE+YG  NW  I +    +  R+    + +W N
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.7
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.69
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.58
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.58
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.53
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.51
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.39
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.24
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
PLN03212	249	Transcription repressor MYB5; Provisional	99.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.09
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.06
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.96
PLN03091	459	hypothetical protein; Provisional	98.96
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.41
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.98
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.96
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.8
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.74
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.69
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.49
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.41
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.22
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.21
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.18
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.12
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.81
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.67
PRK13923	170	putative spore coat protein regulator protein YlbO	96.55
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.54
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.49
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.42
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.35
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.31
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.29
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.28
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.04
PRK13923	170	putative spore coat protein regulator protein YlbO	95.47
KOG1194	534	consensus Predicted DNA-binding protein, contains	93.27
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.65
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.06
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.94
KOG2656	445	consensus DNA methyltransferase 1-associated prote	90.8
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.67
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	89.6
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.53
KOG4167	907	consensus Predicted DNA-binding protein, contains	86.95
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	85.59
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	85.47
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	84.67
smart00595	89	MADF subfamily of SANT domain.	84.65
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.82
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	81.58

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.4e-34  Score=256.90  Aligned_cols=107  Identities=40%  Similarity=0.786  Sum_probs=103.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      .||+||+|||.+|+.+|.+||+++|..||+.++ +|++++||.||.|||+|.+++|.||+|||.+|+++|..+|++|+.|
T Consensus         8 ~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~I   87 (238)
T KOG0048|consen    8 VKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLI   87 (238)
T ss_pred             cCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHH
Confidence            359999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHHHhhhh
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARRCRERS  109 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~~~~~~  109 (249)
                      |++|||||+++|||+|++.++|++....
T Consensus        88 A~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   88 AGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999987654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=8.6e-34  Score=250.13  Aligned_cols=107  Identities=40%  Similarity=0.814  Sum_probs=102.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh-cCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL-QGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAV   80 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l-~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~   80 (249)
                      ++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||.|||++|++++..||++|+.
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~  102 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL  102 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHH
Confidence            689999999999999999999998999999998 5999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHhhh
Q 025697           81 IARLFPGRTDNAVKNHWHVIMARRCRER  108 (249)
Q Consensus        81 IA~~lpgRT~~~cknrW~~~lkr~~~~~  108 (249)
                      ||+.|||||+++|||||+.++++++...
T Consensus       103 IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212        103 IAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            9999999999999999999999887653

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=5.5e-31  Score=247.51  Aligned_cols=106  Identities=42%  Similarity=0.889  Sum_probs=102.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh-cCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL-QGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAV   80 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l-~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~   80 (249)
                      ++||+||+|||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||.|||++|++++.+||++|+.
T Consensus        12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWsk   91 (459)
T PLN03091         12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ   91 (459)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHH
Confidence            579999999999999999999999999999988 4999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           81 IARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        81 IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      ||+.|||||+++||+||+.+++++++.
T Consensus        92 IAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         92 IAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998774

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=1e-18  Score=170.12  Aligned_cols=92  Identities=32%  Similarity=0.593  Sum_probs=88.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhC-CchHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHG-NRWAV   80 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~   80 (249)
                      +++|+||++||-+|+.+|++||..+|.+|-..+|+|+..|||+||.|.|+...|++.||-.||+.|+.+|.+|| ++|.+
T Consensus       358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~Wak  437 (939)
T KOG0049|consen  358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAK  437 (939)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhhCCCCCHHHH
Q 025697           81 IARLFPGRTDNAV   93 (249)
Q Consensus        81 IA~~lpgRT~~~c   93 (249)
                      ||..||.||..|.
T Consensus       438 cA~~Lp~~t~~q~  450 (939)
T KOG0049|consen  438 CAMLLPKKTSRQL  450 (939)
T ss_pred             HHHHccccchhHH
Confidence            9999999999443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.70  E-value=2.8e-17  Score=160.19  Aligned_cols=109  Identities=22%  Similarity=0.481  Sum_probs=100.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 025697            3 TRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHG-NRW   78 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G-~~W   78 (249)
                      ++..||+|||.+|+.+|.....   .+|.+|-.+||||+..|..-||...|+|.+++|+||.+||.+|+.+|.+|| ..|
T Consensus       304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw  383 (939)
T KOG0049|consen  304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDW  383 (939)
T ss_pred             HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccch
Confidence            4678999999999999998743   479999999999999999999999999999999999999999999999999 569


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHHHHHHhhhhhH
Q 025697           79 AVIARLFPGRTDNAVKNHWHVIMARRCRERSRL  111 (249)
Q Consensus        79 s~IA~~lpgRT~~~cknrW~~~lkr~~~~~~~~  111 (249)
                      .+|-..+|||++.||+.||...|.++.+...+.
T Consensus       384 ~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~  416 (939)
T KOG0049|consen  384 AKVRQAVPNRSDSQCRERYTNVLNRSAKVERWT  416 (939)
T ss_pred             hhHHHhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence            999999999999999999999999888765444

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.69  E-value=3.9e-17  Score=115.17  Aligned_cols=60  Identities=53%  Similarity=1.040  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHH
Q 025697            7 WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERL   67 (249)
Q Consensus         7 WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~L   67 (249)
                      ||+|||++|+.+|..|| .+|..||+.|+.||+.+|+.||.++|.|.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5799999999779999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=9.7e-16  Score=146.46  Aligned_cols=109  Identities=30%  Similarity=0.640  Sum_probs=103.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 025697            1 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAV   80 (249)
Q Consensus         1 ~~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~   80 (249)
                      +|+.|.|+.-||+.|..+|.+||.+.|.+|+..++..+++||+.||..+|+|.+++..|+.|||++|+.+...+...|..
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHhhhhh
Q 025697           81 IARLFPGRTDNAVKNHWHVIMARRCRERSR  110 (249)
Q Consensus        81 IA~~lpgRT~~~cknrW~~~lkr~~~~~~~  110 (249)
                      ||..| ||+.+||-.||..++-........
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence            99999 999999999999998877765544

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.58  E-value=2.9e-15  Score=145.15  Aligned_cols=105  Identities=30%  Similarity=0.630  Sum_probs=100.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      .+.|.|+..||+.|..+|+.+|+.+|.+||..+..|++++|+.||+++++|.+++..|+.|||..|+.+..++|..|+.|
T Consensus        18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wsti   97 (512)
T COG5147          18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTI   97 (512)
T ss_pred             ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhhh
Confidence            46799999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~~~  106 (249)
                      |..+++|+..+|.++|...+.....
T Consensus        98 a~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          98 ADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             ccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999887766554

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.53  E-value=1.9e-14  Score=140.87  Aligned_cols=105  Identities=29%  Similarity=0.609  Sum_probs=94.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC--CCCCCCCHHHHHHHHHHHH-------H
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR--INRSPFTEEEEERLLASHR-------I   73 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~--lkkg~WT~EED~~Llelv~-------~   73 (249)
                      .||.||+||++.|..++.++| ..|..|++.| ||.+..|++||+++...+  .+++.||.||++.|+.+|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999 5799999988 899999999999999887  4899999999999999995       3


Q ss_pred             h-------------------CCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhhhh
Q 025697           74 H-------------------GNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERS  109 (249)
Q Consensus        74 ~-------------------G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~~  109 (249)
                      +                   +.+|+.|++.+++|+..+|+.+|+.++.+..-...
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~  515 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR  515 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence            3                   23699999999999999999999999887765443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.51  E-value=9e-15  Score=99.11  Aligned_cols=47  Identities=51%  Similarity=0.985  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhccc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQL   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L   50 (249)
                      ||+||+|||++|+++|.+||..+|..||..|| +||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            78999999999999999999877999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.39  E-value=4.2e-13  Score=90.89  Aligned_cols=46  Identities=37%  Similarity=0.771  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hHHHhhhCC-CCCHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~-Ws~IA~~lp-gRT~~~cknrW~~~l  101 (249)
                      +++||+|||++|+++|.+||.. |..||..|| |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999977 999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.24  E-value=1.1e-11  Score=81.87  Aligned_cols=48  Identities=50%  Similarity=1.014  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      ++.||++||.+|+.++..||..+|..||..|++||+.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            579999999999999999997789999999999999999999998764

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=9e-12  Score=87.68  Aligned_cols=45  Identities=33%  Similarity=0.554  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           59 FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        59 WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      ||.|||++|+++|.+||.+|..||+.|+.||+.+|++||...++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999779999999999885543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=2.5e-11  Score=80.08  Aligned_cols=47  Identities=34%  Similarity=0.714  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +++||.+|+.+|+.++..|| .+|..||..||+||+.+|+.+|+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999987653

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.17  E-value=3.8e-11  Score=106.71  Aligned_cols=73  Identities=18%  Similarity=0.351  Sum_probs=61.9

Q ss_pred             hcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhC-CCCCHHHHHHHHHHHHHHHHhhhhhH
Q 025697           34 LQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLF-PGRTDNAVKNHWHVIMARRCRERSRL  111 (249)
Q Consensus        34 l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~l-pgRT~~~cknrW~~~lkr~~~~~~~~  111 (249)
                      ++.|+..-|..       +.+++++||+|||++|+++|.+|| .+|..||+.+ ++||..||+.||..+|+..+.+....
T Consensus        10 ~~~~~~pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT   82 (249)
T PLN03212         10 VSKKTTPCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT   82 (249)
T ss_pred             CCCCCCCCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence            56677665533       578999999999999999999999 6899999988 59999999999999998888776554


Q ss_pred             HH
Q 025697          112 YA  113 (249)
Q Consensus       112 ~~  113 (249)
                      ..
T Consensus        83 ~E   84 (249)
T PLN03212         83 SD   84 (249)
T ss_pred             hH
Confidence            44

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.09  E-value=1.3e-10  Score=75.50  Aligned_cols=45  Identities=51%  Similarity=0.960  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      +||++||+.|+.++..||..+|..||..+++|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=2.3e-10  Score=74.31  Aligned_cols=43  Identities=42%  Similarity=0.825  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      +||.+|+..|+.++.++| .+|..||..+++||..+|+++|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.06  E-value=3.1e-10  Score=111.65  Aligned_cols=113  Identities=23%  Similarity=0.322  Sum_probs=92.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHC----CC-------------------ChhHhhHHhcCCChhhhhhhhhcccCCCC-CCCC
Q 025697            3 TRGHWRPAEDEKLRELVERYG----PH-------------------NWNAIAEKLQGRSGKSCRLRWFNQLDPRI-NRSP   58 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G----~~-------------------~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~l-kkg~   58 (249)
                      +-+.|+.+||..|...|..|-    -.                   =|+.|...||.|+..+++.+-++...|.- ++|.
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~  386 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGK  386 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCC
Confidence            448899999999999999771    00                   17888888999999999885555555544 9999


Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 025697           59 FTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRA  116 (249)
Q Consensus        59 WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~~~~~~~~~  116 (249)
                      ||+||++.|..+|.++|+.|..|++.| ||.+.+|+.+|..+++..-......|+..+
T Consensus       387 wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eE  443 (607)
T KOG0051|consen  387 WTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEE  443 (607)
T ss_pred             CCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHH
Confidence            999999999999999999999999999 999999999999998877543444444433

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.96  E-value=4.2e-10  Score=100.24  Aligned_cols=62  Identities=16%  Similarity=0.308  Sum_probs=54.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC-CCCHHHHHHHHHHHHHHHHhhhhhHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP-GRTDNAVKNHWHVIMARRCRERSRLYA  113 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp-gRT~~~cknrW~~~lkr~~~~~~~~~~  113 (249)
                      +.+.+|+||.|||++|+++|.+|| ++|..||+.++ +|+..+||-||..+|+..++++.....
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~e   68 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDE   68 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHH
Confidence            344579999999999999999999 67999999999 999999999999999999886554443

>PLN03091 hypothetical protein; Provisional

Probab=98.96  E-value=5.8e-10  Score=106.04  Aligned_cols=59  Identities=15%  Similarity=0.372  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC-CCCHHHHHHHHHHHHHHHHhhhh
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP-GRTDNAVKNHWHVIMARRCRERS  109 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp-gRT~~~cknrW~~~lkr~~~~~~  109 (249)
                      ++.+++++||.|||++|+++|.+|| ++|..||+.++ ||+..||+.||..+|...+.+..
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgp   69 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGT   69 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCC
Confidence            3578999999999999999999999 67999999885 99999999999988877766543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.41  E-value=3.7e-08  Score=96.07  Aligned_cols=98  Identities=29%  Similarity=0.533  Sum_probs=85.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCC--CCCCCCCCHHHHHHHHHHHHHhC----
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP--RINRSPFTEEEEERLLASHRIHG----   75 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p--~lkkg~WT~EED~~Llelv~~~G----   75 (249)
                      -.+|.||.+|+..|...+..+|+ .|..|...+ +|-+..|++||.++...  .+++++|+.||+.+|...+...-    
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhhccCccccccccccccccccc-hhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            35899999999999999999995 599999877 89999999999999888  67888999999999998876432    


Q ss_pred             ----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 025697           76 ----NRWAVIARLFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        76 ----~~Ws~IA~~lpgRT~~~cknrW~~~l  101 (249)
                          ..|..|+..+++|....|+.++.++.
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                36999999999999999988775543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.98  E-value=5.5e-06  Score=78.92  Aligned_cols=47  Identities=26%  Similarity=0.608  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      .+.||.+|+-+|+++++.||.+||..||.+++.|+...|+++|.+++
T Consensus        72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999998864

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.96  E-value=1.4e-05  Score=56.39  Aligned_cols=49  Identities=14%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCh---hHhhHHhc-CC-Chhhhhhhhhccc
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNW---NAIAEKLQ-GR-SGKSCRLRWFNQL   50 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W---~~IA~~l~-~R-t~~qcr~Rw~~~L   50 (249)
                      ++|-.||+||..+++++|+.+|.++|   ..|++.|. .| |..||+.++..|.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            35778999999999999999998799   99999884 46 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.80  E-value=3.6e-05  Score=73.48  Aligned_cols=49  Identities=27%  Similarity=0.383  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +-...||.+|+.+|++++..|| |+|..||.+++.||..+|+.||..+.-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            3456899999999999999999 999999999999999999999976653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.74  E-value=8.8e-05  Score=52.31  Aligned_cols=46  Identities=26%  Similarity=0.413  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---HHHhhhCC-CC-CHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGN-RW---AVIARLFP-GR-TDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~-~W---s~IA~~lp-gR-T~~~cknrW~~~l  101 (249)
                      +-.||+||..++++++..+|. +|   ..|++.+. .| |..+|+.|.+.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            458999999999999999995 99   99999875 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=3.3e-05  Score=75.04  Aligned_cols=82  Identities=18%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCCCCCCC
Q 025697           54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLNDQKSSSSSRP  132 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~~~~~~~~~~~~~~~~~~sS~ss~p  132 (249)
                      ++.|-|+.-||+.|-.+|.+|| +.|++|++.++-.|..||++||..++...++...+............-.-+..+..+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            5678999999999999999999 789999999999999999999999999998877666655554443333444444444


Q ss_pred             CCC
Q 025697          133 NHH  135 (249)
Q Consensus       133 ~~~  135 (249)
                      .+.
T Consensus        85 a~i   87 (617)
T KOG0050|consen   85 ADI   87 (617)
T ss_pred             HHH
Confidence            443

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.49  E-value=0.0005  Score=60.02  Aligned_cols=95  Identities=21%  Similarity=0.463  Sum_probs=72.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhHHhc---CCChhhhhhhhhccc----------------CCC-----CCCCCCCH
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAEKLQ---GRSGKSCRLRWFNQL----------------DPR-----INRSPFTE   61 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~~l~---~Rt~~qcr~Rw~~~L----------------~p~-----lkkg~WT~   61 (249)
                      +|++++|-.|+.+|..-.  +-..|+..++   .-|...+..||+.+|                .|.     ..+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999766  6777877653   467788899998865                221     14668999


Q ss_pred             HHHHHHHHHHHHhCC---chHHHhh-----hCCCCCHHHHHHHHHHHHH
Q 025697           62 EEEERLLASHRIHGN---RWAVIAR-----LFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        62 EED~~Llelv~~~G~---~Ws~IA~-----~lpgRT~~~cknrW~~~lk  102 (249)
                      +|+++|.........   .+.+|-.     .-++||+.++.++|..+.+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            999999997765542   4666632     3468999999999975543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.41  E-value=0.00038  Score=58.66  Aligned_cols=60  Identities=22%  Similarity=0.322  Sum_probs=50.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---C----chHHHhhhCCCCCHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG---N----RWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKR  115 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G---~----~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~~~~~~~~  115 (249)
                      ....||.|||.+|.+.|..|-   +    -...++..| +||+.+|.=||+..++++.........+.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i~~AKkq   69 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAIELAKKQ   69 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            345899999999999998873   2    278888899 99999999999999999988776655543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.22  E-value=0.00032  Score=67.69  Aligned_cols=46  Identities=24%  Similarity=0.546  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      ....||.+|.-+|+++|+.|| .+|.+||.++++|+..||..|+.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            456899999999999999999 5799999999999999999999764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.21  E-value=0.00032  Score=68.93  Aligned_cols=45  Identities=31%  Similarity=0.696  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      ++.||.+|+-+|+++|+.|| .+|.+||.++++||..||..++.++
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            68899999999999999999 5799999999999999999998763

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.18  E-value=0.0004  Score=67.03  Aligned_cols=44  Identities=20%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHV   99 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~   99 (249)
                      ..+||.+|..+|++.+..||-.|.+||.++++||..||.-||..
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            34899999999999999999999999999999999999999943

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.12  E-value=0.00063  Score=66.86  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWH   98 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~   98 (249)
                      -+..||.+|..+|++++..||-.|.+||.++++||..+|--++.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL  295 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL  295 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence            34689999999999999999999999999999999999999984

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.81  E-value=0.0012  Score=49.29  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--C------chHHHhhhCC----CCCHHHHHHHHHHHHHHHHh
Q 025697           57 SPFTEEEEERLLASHRI------HG--N------RWAVIARLFP----GRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        57 g~WT~EED~~Llelv~~------~G--~------~Ws~IA~~lp----gRT~~~cknrW~~~lkr~~~  106 (249)
                      ..||.+|...|++++..      ++  +      -|..||..|.    .||+.||+++|..+.++...
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999998876      21  1      3999998653    69999999999887665544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.67  E-value=0.0014  Score=48.95  Aligned_cols=47  Identities=34%  Similarity=0.632  Sum_probs=33.7

Q ss_pred             CCCCCHHHHHHHHHHHHH--H----C--CC-----ChhHhhHHhc----CCChhhhhhhhhccc
Q 025697            4 RGHWRPAEDEKLRELVER--Y----G--PH-----NWNAIAEKLQ----GRSGKSCRLRWFNQL   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~--~----G--~~-----~W~~IA~~l~----~Rt~~qcr~Rw~~~L   50 (249)
                      |..||.+|...|+.++..  +    +  ..     -|..||..|.    .||+.||+.+|.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            568999999999999987  2    1  11     3999999984    699999999998754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.55  E-value=0.0057  Score=52.19  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=49.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc-------hHHHhhhCCCCCHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHGNR-------WAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRA  116 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~~-------Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~~~~~~~~~  116 (249)
                      +...||.|+|.+|.+.|..|+..       ...++..| +||..+|.-||+.+++++.........+.-
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~I~~AKK~R   71 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQIKLAKKER   71 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            45689999999999999888732       55566777 899999999999999998887666555433

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.54  E-value=0.0015  Score=55.18  Aligned_cols=48  Identities=25%  Similarity=0.474  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCC------ChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPH------NWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~------~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      +.-.||.|||.+|.+.|-+|-..      .+..++..| +||+..|.-||+.+++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            56789999999999999999311      377888877 8999999999998875

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.49  E-value=0.0025  Score=46.08  Aligned_cols=50  Identities=26%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC------CC--hhHhhHHhc-CCChhhhhhhhhcccCCC
Q 025697            4 RGHWRPAEDEKLRELVERYGP------HN--WNAIAEKLQ-GRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~------~~--W~~IA~~l~-~Rt~~qcr~Rw~~~L~p~   53 (249)
                      |-++|.+||..|+.+|..+..      +|  |..+++.-+ .+|-.+-++||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            568999999999999976531      12  999999888 888889999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.42  E-value=0.0055  Score=44.31  Aligned_cols=50  Identities=24%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-------C--chHHHhhhCC-CCCHHHHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHG-------N--RWAVIARLFP-GRTDNAVKNHWHVIMARRC  105 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G-------~--~Ws~IA~~lp-gRT~~~cknrW~~~lkr~~  105 (249)
                      +.++|.+||..|++.|..+.       +  -|..+++.-| .+|-.+.++||...++.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999996652       1  2999999877 8999999999976665543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.35  E-value=0.048  Score=58.15  Aligned_cols=107  Identities=14%  Similarity=0.277  Sum_probs=82.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhh-------hhcc------c----------------------
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLR-------WFNQ------L----------------------   50 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~R-------w~~~------L----------------------   50 (249)
                      .||.-+=..++.+..+||..+-..||..|.++|...++..       |..+      +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999998899999999988888776532       1111      0                      


Q ss_pred             ---------------CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhh------------CCCCCHHHHHHHHHHHHH
Q 025697           51 ---------------DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARL------------FPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        51 ---------------~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~------------lpgRT~~~cknrW~~~lk  102 (249)
                                     -+..++..+|+|||..|+-++.+|| ++|..|-..            +..||+..+..|..++++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           1222344699999999999999999 789999432            357999999999999988


Q ss_pred             HHHhhhhhHH
Q 025697          103 RRCRERSRLY  112 (249)
Q Consensus       103 r~~~~~~~~~  112 (249)
                      -..+......
T Consensus       986 ~~~~e~~~~~  995 (1033)
T PLN03142        986 LIEKENQEYD  995 (1033)
T ss_pred             HHHHHHhhhh
Confidence            7766544433

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.31  E-value=0.0026  Score=59.06  Aligned_cols=47  Identities=23%  Similarity=0.483  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      -.|+.+|+-+|++.....|-+||..||.+++.|+...|+.+|..++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            36999999999999999999999999999999999999999987653

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.29  E-value=0.0076  Score=44.13  Aligned_cols=48  Identities=35%  Similarity=0.529  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHH-----CCC-----------ChhHhhHHhc-----CCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERY-----GPH-----------NWNAIAEKLQ-----GRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~-----G~~-----------~W~~IA~~l~-----~Rt~~qcr~Rw~~~L   50 (249)
                      .+..||++|...|+++|.+|     |..           -|..|+..|.     .|+..+|+..|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            35789999999999999988     211           2999999982     599999999998864

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.28  E-value=0.0047  Score=57.41  Aligned_cols=47  Identities=21%  Similarity=0.395  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      -..|+.+|+.+|++.....| ++|..||.+++.|+...||.||..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 999999999999999999999976554

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.04  E-value=0.019  Score=41.94  Aligned_cols=49  Identities=27%  Similarity=0.485  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----------------chHHHhhhC-----CCCCHHHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGN-----------------RWAVIARLF-----PGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~-----------------~Ws~IA~~l-----pgRT~~~cknrW~~~lkr~  104 (249)
                      ...||.+|...|++++.+|..                 -|..|+..|     +.||..+++.+|..+...-
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            457999999999999988731                 399998754     2699999999998775443

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.47  E-value=0.0089  Score=51.02  Aligned_cols=49  Identities=22%  Similarity=0.500  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCC------hhHhhHHhcCCChhhhhhhhhcccC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHN------WNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~------W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      .+...||.|||.+|.+.|..|+...      ...++..| +|+..+|..||+.+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            3567899999999999999997543      44444445 7999999999977665

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=93.27  E-value=0.78  Score=44.73  Aligned_cols=53  Identities=13%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           55 NRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      -...||.||--++-.+...||.+..+|.+.||.|+-..+..+|+...+.+-..
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~  238 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYD  238 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHH
Confidence            45689999999999999999999999999999999999999998886665543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.65  E-value=0.23  Score=46.38  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCchHHHhhhCC----CCCHHHHHHHHHHHHHHHHhhhhhH
Q 025697           56 RSPFTEEEEERLLASHRIH----------GNRWAVIARLFP----GRTDNAVKNHWHVIMARRCRERSRL  111 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~----------G~~Ws~IA~~lp----gRT~~~cknrW~~~lkr~~~~~~~~  111 (249)
                      ...|+.+|-..||++..+.          +.-|..||+.+.    -||+.+|+.+|..+.++..+.+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            3689999999999987653          235999998442    5999999999999988777654443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.06  E-value=0.4  Score=35.96  Aligned_cols=44  Identities=32%  Similarity=0.482  Sum_probs=33.0

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chHHHhhhCC-----CCCHHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIH---GN----------RWAVIARLFP-----GRTDNAVKNHWHVIM  101 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~---G~----------~Ws~IA~~lp-----gRT~~~cknrW~~~l  101 (249)
                      .||++++..|++++.+.   |+          .|..|+..|.     ..+..+|++||..+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk   62 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK   62 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence            59999999999987543   21          3999987653     247899999996654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.94  E-value=0.54  Score=37.84  Aligned_cols=52  Identities=21%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chHHHhhh------------CCCCCHHHHHHHHHHHHHHH
Q 025697           53 RINRSPFTEEEEERLLASHRIHGN----RWAVIARL------------FPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        53 ~lkkg~WT~EED~~Llelv~~~G~----~Ws~IA~~------------lpgRT~~~cknrW~~~lkr~  104 (249)
                      ..++..+|++||.-|+-++.+||-    .|..|-..            +..||+..+..|-.++++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            556779999999999999999995    79888653            24699999999998887644

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=90.80  E-value=0.23  Score=47.42  Aligned_cols=84  Identities=19%  Similarity=0.329  Sum_probs=63.5

Q ss_pred             ChhHhhHHhcCCChhhhhhhhhcccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCchHH
Q 025697           26 NWNAIAEKLQGRSGKSCRLRWFNQLDPR-------------------------INRSPFTEEEEERLLASHRIHGNRWAV   80 (249)
Q Consensus        26 ~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~-------------------------lkkg~WT~EED~~Llelv~~~G~~Ws~   80 (249)
                      .|.-+.-..+.|...-...+|....++.                         +....||.+|-+-|+++++.|.-+|-.
T Consensus        75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V  154 (445)
T KOG2656|consen   75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV  154 (445)
T ss_pred             CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence            4666655556676666666776653221                         123469999999999999999999999


Q ss_pred             Hhhh-----CCC-CCHHHHHHHHHHHHHHHHhhhh
Q 025697           81 IARL-----FPG-RTDNAVKNHWHVIMARRCRERS  109 (249)
Q Consensus        81 IA~~-----lpg-RT~~~cknrW~~~lkr~~~~~~  109 (249)
                      ||..     ++. ||-..+|.||+.+.++.++-+.
T Consensus       155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  155 IADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            9875     665 9999999999998888776443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.67  E-value=0.29  Score=39.37  Aligned_cols=46  Identities=22%  Similarity=0.412  Sum_probs=35.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHh------------cCCChhhhhhhhhc
Q 025697            3 TRGHWRPAEDEKLRELVERYGP---HNWNAIAEKL------------QGRSGKSCRLRWFN   48 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l------------~~Rt~~qcr~Rw~~   48 (249)
                      ++..||.+||.-|+-++.+||-   +.|..|...+            ..||+..+..|-..
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT  108 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence            5678999999999999999998   7899998875            25888877777544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=89.60  E-value=0.44  Score=35.98  Aligned_cols=27  Identities=33%  Similarity=0.716  Sum_probs=17.6

Q ss_pred             CCCCCHHHHHHH--------HHHHHHHCCCChhHhhHH
Q 025697            4 RGHWRPAEDEKL--------RELVERYGPHNWNAIAEK   33 (249)
Q Consensus         4 Kg~WT~EED~~L--------~~~V~~~G~~~W~~IA~~   33 (249)
                      .|-||+++|+.|        ..++++||   +..|+..
T Consensus        47 ~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   47 PGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            688999999999        56667887   6777654

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.53  E-value=0.62  Score=44.56  Aligned_cols=44  Identities=23%  Similarity=0.465  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      .+||.+|-+++..+...+|...+.|+..+|.|...|||.+|..-
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999998543

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=86.95  E-value=0.69  Score=47.52  Aligned_cols=43  Identities=12%  Similarity=0.434  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhc
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN   48 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~   48 (249)
                      -.||+.|..++.+++..|. .++..|++.++++|..+|-+.|+.
T Consensus       620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT  662 (907)
T ss_pred             ccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence            3699999999999999999 679999999999999999988765

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=85.59  E-value=1.4  Score=32.97  Aligned_cols=44  Identities=27%  Similarity=0.554  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHHHHH---CCC---------ChhHhhHHhcC-----CChhhhhhhhhcc
Q 025697            6 HWRPAEDEKLRELVERY---GPH---------NWNAIAEKLQG-----RSGKSCRLRWFNQ   49 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~---G~~---------~W~~IA~~l~~-----Rt~~qcr~Rw~~~   49 (249)
                      +||+++++.|++++...   |..         .|..|+..|..     .+..||+.||..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            59999999999998755   222         39999999842     4567888887654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=85.47  E-value=0.92  Score=43.42  Aligned_cols=43  Identities=19%  Similarity=0.413  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhc
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN   48 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~   48 (249)
                      -+||.+|.+++..++...|. ++..|+..+|.|..+|++..|.+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence            36999999999999999995 69999999999999999999876

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=84.67  E-value=3.2  Score=27.71  Aligned_cols=41  Identities=20%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           61 EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        61 ~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      ++++..++.++-..|-.|.+||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888888888999999999999 8999999998766544

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>smart00595 MADF subfamily of SANT domain

Probab=84.65  E-value=3  Score=30.78  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=23.8

Q ss_pred             chHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           77 RWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        77 ~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      -|..||..|+. |...|+.+|+.+-.+-.+.
T Consensus        29 aW~~Ia~~l~~-~~~~~~~kw~~LR~~y~~e   58 (89)
T smart00595       29 AWEEIAEELGL-SVEECKKRWKNLRDRYRRE   58 (89)
T ss_pred             HHHHHHHHHCc-CHHHHHHHHHHHHHHHHHH
Confidence            39999999955 9999999998876554443

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.82  E-value=1.4  Score=41.16  Aligned_cols=46  Identities=28%  Similarity=0.463  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHH------C---CCChhHhhHHhc----CCChhhhhhhhhccc
Q 025697            5 GHWRPAEDEKLRELVERY------G---PHNWNAIAEKLQ----GRSGKSCRLRWFNQL   50 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~------G---~~~W~~IA~~l~----~Rt~~qcr~Rw~~~L   50 (249)
                      ..|+.+|-..|+.+....      |   ..-|..||..+.    -|++.+|+.+|.++.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            579999999999998743      1   124999999763    499999999998864

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=81.58  E-value=2.1  Score=27.98  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhc
Q 025697           10 AEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN   48 (249)
Q Consensus        10 EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~   48 (249)
                      +=|.+|+.++...|...|..||+.+ |=+...|..|+..
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~r   40 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHH
Confidence            4588899999999988999999988 8999999998764

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-27
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-27
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		9e-27
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-26
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		4e-26
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		9e-22
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-16
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-12
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		6e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-10
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-09
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-09
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		5e-07
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		4e-04
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		4e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 72/104 (69%)
Query: 2   CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
             +G W   ED+K+ ELV++YG   W  IA+ L+GR GK CR RW N L+P + +S +TE
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 62  EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           EE+  +  +H++ GNRWA IA+L PGRTDNAVKNHW+  + R+ 
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)
Query: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
           M  +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +T
Sbjct: 1   MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           EEE+  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+ 
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 73/102 (71%)
Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+ 
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 73/104 (70%)
Query: 2   CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
             +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TE
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 62  EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           EE+  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+ 
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 72/102 (70%)
Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ E V++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           +  +  +H+  GNRWA IA+L PGRTDNAVKNHW+  M R+ 
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 67/102 (65%)
Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G +  AED+ +RE V+  GP NW  I   L  RS K CR RWFN LDP + +  +T EE
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           +E +  ++   G++W+VIA+L PGRTDNA+KN W+  +++R 
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 9   PAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLL 68
           P EDE L+  V ++G  +W  IA     R+ + CR RW N L P I+ +P+T EE+  L+
Sbjct: 16  PEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74
Query: 69  ASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI 100
              + +G +WA+IA+ FPGRTD  +KN W  I
Sbjct: 75  QKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 11  EDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLAS 70
           ED KL++LV RYG  +W  I++ +  R+ + CR RW N ++P +   P++ EE+  L   
Sbjct: 8   EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67
Query: 71  HRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCR 106
           +  +G +W  I++    R+DN ++N W +I   R +
Sbjct: 68  YAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 54  INRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           + ++ +TEEE+  L  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+ 
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 54  INRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRC 105
           + ++ +TEEE+  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+ 
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   ED++L +LV++YGP  W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60
          WR  EDE L+  V +YG + W+ IA  L  +S K C+ RW+  LDP I ++ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          W   EDEKL++LVE+ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 6  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          W   EDEKL++LVE+ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 6  WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-62
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-05
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-60
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-59
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	8e-19
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-59
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-58
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-06
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-35
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-09
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-04
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-32
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-25
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-25
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-07
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-11
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-04
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	8e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	6e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	7e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	9e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	9e-06
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  190 bits (485), Expect = 3e-62
 Identities = 47/128 (36%), Positives = 71/128 (55%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G +  AED+ +RE V+  GP NW  I   L  RS K CR RWFN LDP + +  +T EE
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAAQTFLND 123
           +E +  ++   G++W+VIA+L PGRTDNA+KN W+  +++R    S              
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKR 121

Query: 124 QKSSSSSR 131
           + +    +
Sbjct: 122 KAADVPKK 129

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +  W P EDE +     + G   W+ IA+ + GR+  + + RW + +  RI+ +      
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRISTNS----N 108

Query: 64  EERLLASHRIHGNRWAVIARLF 85
            + +L   R    + A + +  
Sbjct: 109 HKEILLPDRSKKRKAADVPKKL 130

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  184 bits (469), Expect = 4e-60
 Identities = 32/105 (30%), Positives = 59/105 (56%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +  +   ED KL++LV RYG  +W  I++ +  R+ + CR RW N ++P +   P++ EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
           +  L   +  +G +W  I++    R+DN ++N W +I   R + +
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  183 bits (468), Expect = 1e-59
 Identities = 51/101 (50%), Positives = 72/101 (71%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ E V++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104
           +  +  +H+  GNRWA IA+L PGRTDNAVKNHW+  M R+
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 78.7 bits (195), Expect = 8e-19
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 13/80 (16%)

Query: 30  IAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNR-WAVIARLFPGR 88
           +   ++ R+   C+ RW   L+P +N+ P+T+EE++R++   + +G + W+ IA+   GR
Sbjct: 1   MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR 60

Query: 89  TDNAVKNHWHVIMARRCRER 108
                         ++CRER
Sbjct: 61  I------------GKQCRER 68

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  181 bits (463), Expect = 3e-59
 Identities = 50/101 (49%), Positives = 73/101 (72%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  180 bits (458), Expect = 3e-58
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 2   CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTE 61
             +  + P EDE L+  V ++G  +W  IA     R+ + CR RW N L P I+ +P+T 
Sbjct: 9   AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTA 67

Query: 62  EEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSR 110
           EE+  L+   + +G +WA+IA+ FPGRTD  +KN W  I  +    +++
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQ 116

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 52  PRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
               +  FT EE+E L  +   HG+ W +IA  FP R             AR+CR+R
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRN------------ARQCRDR 51

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  177 bits (452), Expect = 6e-57
 Identities = 50/101 (49%), Positives = 73/101 (72%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ +LV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117

Query: 64  EERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  122 bits (308), Expect = 3e-35
 Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +  W   EDEKL++LVE+ G  +W  IA  L  R+   C+ RW   L+P + + P+T+EE
Sbjct: 6   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 65

Query: 64  EERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
           ++R++   + +G  RW+VIA+   GR     +  WH
Sbjct: 66  DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 101

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRI 54
           +  W   ED  + +  +R G   W  IA+ L GR+  + +  W + +  ++
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 54 INRSPFTEEEEERLLASHRIHGNR-WAVIARLFPGRTDNAVKNHWH 98
          + ++ +T EE+E+L      +G   W VIA   P RTD   ++ W 
Sbjct: 4  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 49

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  111 bits (279), Expect = 6e-32
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           G WR  EDE L+  V +YG + W+ IA  L  +S K C+ RW+  LDP I ++ ++   
Sbjct: 9  GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68

Query: 64 E 64
           
Sbjct: 69 S 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 52  PRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
                  +   E+E L A+   +G N+W+ IA L   ++            A++C+ R
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKS------------AKQCKAR 50

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 99.1 bits (248), Expect = 2e-27
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   ED++L +LV++YGP  W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 94.2 bits (235), Expect = 1e-25
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +  W   EDEKL++LVE+ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.8 bits (112), Expect = 8e-08
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 54  INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
           + ++ +T EE+E+L      +G + W VIA   P RTD             +C+ R
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD------------VQCQHR 44

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 92.7 bits (231), Expect = 6e-25
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 2  CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
            +  W   EDE+LR LV ++G  +W  +A     R+ + C+ RW   L  
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 52  PRINRSPFTEEEEERLLASHRIHGNR-WAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
               +  +T EE+E+L A  R  G + W  +A  FP RTD            ++C+ R
Sbjct: 4   GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD------------QQCQYR 49

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS 57
          +  W   E+EKL  L +   P  W  IA  + GR+   C   +   LD    R 
Sbjct: 9  KTEWSREEEEKLLHLAKLM-PTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 51  DPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERS 109
                ++ ++ EEEE+LL   ++   +W  IA +  GRT      H+  ++ +  +  S
Sbjct: 4   GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPI-IGRTAAQCLEHYEFLLDKAAQRDS 61

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD 51
             W   E+  L E V   G  NW  +A ++  ++ + C   +     
Sbjct: 8  DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 55 NRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
              +T +EE  LL +    G   W  +A     +T    + H+ 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.4 bits (134), Expect = 7e-11
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAE--KLQGRSGKSCRLRWFN 48
          R  W   ED+ LR  V +YG  NW+ I    K   R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 56  RSPFTEEEEERLLASHRIHGN-RWAVIARL--FPGRTDNAVKNHWHVIM 101
           R  +  EE++ L +  R +G   W+ I     F  RT   +K+ W  + 
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAE--KLQGRSGKSCRLRWFNQLDPRIN 55
          +  W   E E ++  V++YG  NW AI++      R+    + RW       +N
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 56  RSPFTEEEEERLLASHRIHGN-RWAVIARLFP--GRTDNAVKNHWHVIM 101
           +  +T EE E + A  + +G   WA I++ +P   RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAE--KLQGRSGKSCRLRWFN 48
           R  W   ED+ LR  V +YG  NW+ I    K   R+    + RW  
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 52  PRINRSPFTEEEEERLLASHRIHGN-RWAVIARL--FPGRTDNAVKNHWHVIMARRCRER 108
               R  +  EE++ L +  R +G   W+ I     F  RT   +K+ W  +   +    
Sbjct: 6   RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65

Query: 109 SR 110
             
Sbjct: 66  DS 67

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAE--KLQGRSGKSCRLRWFNQLDPRIN 55
           +  W   E E ++  V++YG  NW AI++      R+    + RW       +N
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 48  NQLDPRINRSPFTEEEEERLLASHRIHGN-RWAVIARLFP--GRTDNAVKNHWHVIM 101
           +       +  +T EE E + A  + +G   WA I++ +P   RT   +K+ W  + 
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 23/187 (12%), Positives = 55/187 (29%), Gaps = 14/187 (7%)

Query: 3   TRGHWRPAEDEKLRELVERYGPH-----NWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS 57
            +  +   EDE + ++V +          ++ I+  +   +G S R R+   L  R+   
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66

Query: 58  PFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRERSRLYAKRAA 117
              ++  + +       GN               ++K  +            +    R  
Sbjct: 67  YEVDKFGKLVRDD---DGNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRDL 117

Query: 118 QTFLNDQKSSSSSRPNHHAQTGCTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFREL 177
                D   S  +  +        ++    N++      F      S       +FF+  
Sbjct: 118 FQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHF 177

Query: 178 CDGNTSH 184
            + + +H
Sbjct: 178 AEEHAAH 184

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAE----KLQGRSGKSCRLRWFN-----QLDPR 53
            R  +  AE E L E VE  G   W  +       +  R+    + +W        + P+
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 54  INRS-PFTEEEEERLLASHRIHGNRWA 79
             R  P  +E  +R+LA+        +
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAE----KLQGRSGKSCRLRWFN-----QLDPR 53
            R  +  AE E L E VE  G   W  +          R+    + +W        + P+
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 54  INRS-PFTEEEEERLLASHRIHGNRWA 79
             R  P  ++  +R+LA+H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRW 46
           G + P E EKL+EL  ++G  +W  I   L GRS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 34  LQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAV 93
           +      S           R +   +T EE E+L      HGN WA I     GR+ ++V
Sbjct: 1   MHHHHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSV 59

Query: 94  KNHWHVI 100
           K+   ++
Sbjct: 60  KDRCRLM 66

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 52  PRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER 108
                  +T EE+E         G RW  I++L   RT   VK++       + +  
Sbjct: 5   SSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 6  HWRPAEDEKLRELVERYGPHNWNAIAEKL-QGRSGKSCRLRWFN 48
          +W   E+  L +  E  G  NW  IA+ +   R+ + CR  +  
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 47 FNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHW 97
            +         +TE+E   LL +  ++ + W  ++     RT +    H+
Sbjct: 9  LAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN 48
          W   E   L E +E Y   +WN ++E +  R+   C L +  
Sbjct: 21 WTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLR 61

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAE----KLQGRSGKSCRLRWFN-----QLDPR 53
           R  +  AE E L + VE+ G   W  +          R+    + +W       ++ P+
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 54 INRS-PFTEEEEERLLASHRIHGNRWA 79
            R  P  +E   R+L +H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 43 RLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWH 98
               +     +    +TEEE          HG  W+ IAR+   +T +  KN + 
Sbjct: 3  HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF 58

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAE----KLQGRSGKSCRLRWFN-----QLDPRINRS 57
          +  AE E L E VE  G   W  +          R+    + +W        + P+  R 
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 58 -PFTEEEEERLLASHRIHGNR 77
           P  ++  +R+LA+H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 7  WRPAEDEKLRELVERY---GPHNWNAIAEKLQGRSGKSCRLRW 46
          W   + + L   +++Y       W+ IA  +  +S + C  R+
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 48  NQLDPRINRSPFTEEEE---ERLLASHRIH-GNRWAVIARLFPGRTDNAVKNHWHVIMA 102
            +   R    P+T+ ++   E  L  +     + W  IAR  P ++       + ++++
Sbjct: 10  RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 82/261 (31%)

Query: 7   WRPAEDEKLRELVERYGPHNWNAIAEKLQGR--SGKSC-----------------RLRWF 47
            R     KLR+ +    P     +   + G   SGK+                  ++ W 
Sbjct: 132 SRLQPYLKLRQALLELRPAKN--VL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 48  N-------------------QLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGR 88
           N                   Q+DP      +T   +       RIH  + A + RL   +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDP-----NWTSRSDHSSNIKLRIHSIQ-AELRRLLKSK 241

Query: 89  T--------DNAVKNHWHV-IMARRCRERSRLYAKRAAQTFLNDQKSSSSSRPNHHAQTG 139
                     N V+N          C+    L   R  Q       ++++     H    
Sbjct: 242 PYENCLLVLLN-VQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 140 CTDLETKNNNLASFVEIFRGRFHYSTYPHNQLQFFRELCDGNTSHLG----SKKEDKNQP 195
            T  E K + L  +++           P       RE+   N   L     S ++     
Sbjct: 298 LTPDEVK-SLLLKYLDC-----RPQDLP-------REVLTTNPRRLSIIAESIRDGLATW 344

Query: 196 VEFYDFLQVNTDSTKSEVIDT 216
            + +    VN D   + +I++
Sbjct: 345 -DNW--KHVNCD-KLTTIIES 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.85
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.74
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.73
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.72
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.72
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.7
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.69
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.68
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.64
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.64
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.56
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.54
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.54
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.52
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.51
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.47
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.21
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.47
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.46
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.4
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.4
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.35
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.02
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.32
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.32
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.27
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.25
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.22
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.21
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.2
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.18
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.14
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.02
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.99
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.98
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.95
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.83
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.82
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.8
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.69
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.69
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.57
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.55
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.51
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.28
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.27
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.2
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.06
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.03
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.02
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.97
2crg_A	70	Metastasis associated protein MTA3; transcription	97.84
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.05
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.78
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.78
2crg_A	70	Metastasis associated protein MTA3; transcription	97.74
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.7
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.7
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.46
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.23
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.2
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.17
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.23
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.14
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.85
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.54
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.06
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.94
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	93.04
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.82
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	84.36
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.63

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=8.2e-35  Score=226.53  Aligned_cols=103  Identities=49%  Similarity=1.034  Sum_probs=98.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      ++||+||+|||++|+++|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|+++|.+||.+|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            57999999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHH
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      |+.|||||+++|++||+.+++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999988765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2e-34  Score=225.59  Aligned_cols=103  Identities=31%  Similarity=0.673  Sum_probs=99.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIAR   83 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~   83 (249)
                      ||+||+|||++|+++|..||..+|..||..||+||+.||++||.++|+|.+++++||.|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            79999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHHHHh
Q 025697           84 LFPGRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        84 ~lpgRT~~~cknrW~~~lkr~~~  106 (249)
                      .|||||+++|++||+.++++..+
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHH
Confidence            99999999999999999887654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.1e-33  Score=225.86  Aligned_cols=102  Identities=38%  Similarity=0.778  Sum_probs=98.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      .+||+||+|||++|+++|..||. +|..||+.|++|++.||++||.++|+|.+++++||.|||++|+++|.+||.+|+.|
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~I   87 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAII   87 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHH
Confidence            57999999999999999999996 89999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHH
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      |+.|||||+.+|++||..++++.
T Consensus        88 a~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           88 AKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999887653

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=5.7e-34  Score=230.48  Aligned_cols=104  Identities=44%  Similarity=0.868  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIAR   83 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~   83 (249)
                      ||+||+|||++|+.+|..||..+|..||..||+||+.||++||.++|+|.+++++||.|||++|+++|.+||++|+.||+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            79999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           84 LFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        84 ~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      .|||||+++|++||+.++++++..
T Consensus        82 ~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999887654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=2.2e-33  Score=225.93  Aligned_cols=103  Identities=50%  Similarity=1.026  Sum_probs=99.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      +++|+||+|||++|+++|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|+++|.+||.+|+.|
T Consensus        25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~I  104 (128)
T 1h8a_C           25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI  104 (128)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHH
Confidence            57899999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHH
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      |+.|||||+++|++||+.+++++
T Consensus       105 a~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          105 AKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             GGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999888765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=3.3e-31  Score=220.38  Aligned_cols=103  Identities=49%  Similarity=1.034  Sum_probs=99.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      +++|+||+|||++|+.+|..||..+|..||..||+||+.||+.||.++|+|.+++++||+|||.+|++++.+||.+|+.|
T Consensus        56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~I  135 (159)
T 1h89_C           56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI  135 (159)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred             cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHH
Confidence            57899999999999999999998789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHHHHH
Q 025697           82 ARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        82 A~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      |+.|||||+++|++||+.+++++
T Consensus       136 a~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          136 AKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999888765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.5e-30  Score=215.08  Aligned_cols=103  Identities=34%  Similarity=0.741  Sum_probs=60.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-chHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGN-RWAV   80 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~   80 (249)
                      ++||+||+|||++|+++|.+||..+|..||..||+|++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            478999999999999999999988999999999999999999999999999999999999999999999999995 7999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           81 IARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        81 IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      ||..|||||+.+|++||..++.+.
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCcc
Confidence            999999999999999998876543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.7e-22  Score=146.58  Aligned_cols=63  Identities=37%  Similarity=0.801  Sum_probs=61.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEE   64 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED   64 (249)
                      +++|+||+|||++|+++|.+||..+|..||..|++||+.||+.||.++|+|.+++++||.|||
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            689999999999999999999988999999999999999999999999999999999999987

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.82  E-value=3.5e-21  Score=154.56  Aligned_cols=75  Identities=28%  Similarity=0.696  Sum_probs=50.5

Q ss_pred             hhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           30 IAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        30 IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      ||+.||+||+.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||..++...
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            78999999999999999999999999999999999999999999995 7999999999999999999998876543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=7e-19  Score=154.21  Aligned_cols=103  Identities=17%  Similarity=0.313  Sum_probs=91.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCC-----hhHhhHHhcCCChhhhhhhhhcccCCCCC---------------------
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHN-----WNAIAEKLQGRSGKSCRLRWFNQLDPRIN---------------------   55 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~-----W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lk---------------------   55 (249)
                      ++|++||+|||++|+++|.++|..+     |..||+.|||||+.||+.||+.+|.+.+.                     
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ik   85 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIK   85 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCcee
Confidence            5789999999999999999998642     99999999999999999999999999886                     


Q ss_pred             --------CCCCCHHHHHHHHHHHHH-h--------------------------------CC------------------
Q 025697           56 --------RSPFTEEEEERLLASHRI-H--------------------------------GN------------------   76 (249)
Q Consensus        56 --------kg~WT~EED~~Llelv~~-~--------------------------------G~------------------   76 (249)
                              +..||.+||-.|+..+.+ +                                |.                  
T Consensus        86 is~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  165 (246)
T 1ign_A           86 TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSR  165 (246)
T ss_dssp             ESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCC
T ss_pred             eeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccc
Confidence                    789999999999998876 1                                11                  


Q ss_pred             -------chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           77 -------RWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        77 -------~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                             .|..||+.+|+||..++|+||...++..
T Consensus       166 ~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          166 RGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                   6999999999999999999998887665

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.74  E-value=1e-18  Score=139.52  Aligned_cols=79  Identities=24%  Similarity=0.392  Sum_probs=75.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhcccC-----CCCCCC-CCCHHHHHHHHHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQLD-----PRINRS-PFTEEEEERLLASH   71 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L~-----p~lkkg-~WT~EED~~Llelv   71 (249)
                      ++|++||+|||+.|+++|++||.++|..|+..+    ++||+.+|++||+++|+     |.++++ +|+++|+.+|++++
T Consensus        15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h   94 (121)
T 2juh_A           15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH   94 (121)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence            578999999999999999999988999999985    89999999999999997     999999 99999999999999


Q ss_pred             HHhCCchHH
Q 025697           72 RIHGNRWAV   80 (249)
Q Consensus        72 ~~~G~~Ws~   80 (249)
                      ..+|++|+.
T Consensus        95 ~~~gn~~~~  103 (121)
T 2juh_A           95 AYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHccchhc
Confidence            999999976

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.73  E-value=2.3e-18  Score=117.73  Aligned_cols=52  Identities=48%  Similarity=1.085  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      ++||+||+|||++|+++|.+||..+|..||..|++||+.||+.||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999878999999999999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.72  E-value=2.5e-18  Score=117.47  Aligned_cols=52  Identities=38%  Similarity=0.810  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      |+||+||+|||++|+++|.+||.++|..||+.|++||+.||+.||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            6899999999999999999999878999999999999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=5.5e-18  Score=119.11  Aligned_cols=54  Identities=30%  Similarity=0.746  Sum_probs=51.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRIN   55 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lk   55 (249)
                      ++||+||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.++
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            679999999999999999999987899999999999999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.71  E-value=1.1e-17  Score=133.63  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhccc-----CCCCCCCCCCHHH-HHHHHHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQL-----DPRINRSPFTEEE-EERLLASH   71 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L-----~p~lkkg~WT~EE-D~~Llelv   71 (249)
                      .+|++||+|||+.|+++|++||.++|..|+..+    ++||+.+|++||.+++     +|.++++.|+++| +.+|++++
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h  108 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQ  108 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence            368999999999999999999998999999975    8999999999999999     8999999999999 89999999


Q ss_pred             HHhCCc
Q 025697           72 RIHGNR   77 (249)
Q Consensus        72 ~~~G~~   77 (249)
                      ..||++
T Consensus       109 ~~~g~~  114 (122)
T 2roh_A          109 AYWSVD  114 (122)
T ss_dssp             HHHHSS
T ss_pred             HHHhhH
Confidence            999964

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.70  E-value=9.7e-18  Score=122.86  Aligned_cols=58  Identities=28%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             hhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           42 CRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        42 cr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      .--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 99999999999864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.69  E-value=1.6e-17  Score=119.94  Aligned_cols=59  Identities=27%  Similarity=0.429  Sum_probs=55.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccCCCCCCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLDPRINRSPFT   60 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~p~lkkg~WT   60 (249)
                      ++||+||+|||++|+++|.+||.++|..||..|+  +||+.||++||.++|+|.+.++..+
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5799999999999999999999889999999999  9999999999999999999987753

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.68  E-value=2e-17  Score=118.25  Aligned_cols=54  Identities=26%  Similarity=0.514  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLDPRIN   55 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~p~lk   55 (249)
                      .+|++||+|||++|+++|++||.++|..||+.++  +||+.||++||.++++|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4799999999999999999999889999999876  99999999999999988764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=114.39  Aligned_cols=58  Identities=22%  Similarity=0.458  Sum_probs=55.1

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           49 QLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        49 ~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      +|+|.+++++||.|||++|+++|.+||.+|..||. ++|||+.||++||..++++.++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            78999999999999999999999999999999999 88999999999999999887754

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=2.2e-16  Score=114.91  Aligned_cols=58  Identities=22%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           50 LDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        50 L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      ++|.+++++||.|||++|+++|.+||.+|..||..|||||+.||++||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999999999999999999999887654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.64  E-value=1e-16  Score=110.06  Aligned_cols=49  Identities=31%  Similarity=0.539  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc--CCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ--GRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~--~Rt~~qcr~Rw~~~L~   51 (249)
                      +||+||+|||++|+++|.+||+++|..||..|+  +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            689999999999999999999889999999999  9999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.64  E-value=1.2e-16  Score=112.47  Aligned_cols=52  Identities=19%  Similarity=0.427  Sum_probs=49.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      +.+++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|.+.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            5799999999999999999999889999999999999999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.61  E-value=4.4e-16  Score=108.95  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhccc
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQL   50 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L   50 (249)
                      +.+++||+|||++|+++|++||..+|..||+.|+ +||+.||+.||.+++
T Consensus         7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4589999999999999999999889999999999 999999999999865

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=4.6e-16  Score=109.20  Aligned_cols=54  Identities=30%  Similarity=0.557  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||..+|++.
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            4788999999999999999999999 69999999999999999999998877543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=2e-15  Score=102.88  Aligned_cols=49  Identities=31%  Similarity=0.674  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +++++||.|||++|+++|.+||. +|..||..|||||+.||++||..+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 99999999999999999999998874

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=2.4e-15  Score=103.11  Aligned_cols=49  Identities=24%  Similarity=0.460  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr  103 (249)
                      ++++||+|||++|+++|.+|| ++|+.||..||  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999998764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=3.9e-16  Score=111.66  Aligned_cols=54  Identities=28%  Similarity=0.500  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS   57 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg   57 (249)
                      +++|+||+|||++|+++|..||. +|..||+ ++|||+.||+.||.++|+|.++++
T Consensus         7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            68999999999999999999996 8999999 889999999999999998866554

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.56  E-value=4.7e-15  Score=106.97  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=52.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHHHh
Q 025697           50 LDPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        50 L~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr~~~  106 (249)
                      ..+..++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||..+++..+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~   63 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI   63 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence            45677899999999999999999999 79999999999  99999999999999987654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=4.1e-15  Score=101.45  Aligned_cols=49  Identities=33%  Similarity=0.717  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999996 79999999999999999999987764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=4.9e-15  Score=104.17  Aligned_cols=52  Identities=19%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      .+.+.+++||+|||++|+++|.+|| ++|..||++|||||+.||++||..++.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3568899999999999999999999 899999999999999999999987764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.4e-15  Score=111.37  Aligned_cols=56  Identities=23%  Similarity=0.421  Sum_probs=51.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC-----CChhHhhHHhcCCChhhhhhhhhcccCCCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGP-----HNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRS   57 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~-----~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg   57 (249)
                      +.+++||+|||++|+++|..||.     .+|..||+.|++||+.||+.||.++|.+.++.|
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999996     689999999999999999999999998876665

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.9e-15  Score=108.25  Aligned_cols=57  Identities=21%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      .|.+++++||.|||++|+++|.+|| ++|..||..|||||+.||++||..+|...+.+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4678999999999999999999999 89999999999999999999999888765543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.54  E-value=2.3e-15  Score=109.50  Aligned_cols=54  Identities=13%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINR   56 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkk   56 (249)
                      +++|+||+|||++|+++|..||. +|..||..||+||+.||+.||.++|.+.++.
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999996 7999999999999999999999998775554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.52  E-value=1.7e-14  Score=102.95  Aligned_cols=51  Identities=27%  Similarity=0.530  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lkr~  104 (249)
                      .++++||+|||++|+++|.+|| ++|+.||+.+|  |||+.||++||..+++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            5788999999999999999999 69999999876  999999999999988754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.51  E-value=2.2e-14  Score=107.47  Aligned_cols=69  Identities=26%  Similarity=0.446  Sum_probs=61.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHH----hcCCChhhhhhhhhccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEK----LQGRSGKSCRLRWFNQL-----DPRINRS-PFTEEEEERLLASHRI   73 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~----l~~Rt~~qcr~Rw~~~L-----~p~lkkg-~WT~EED~~Llelv~~   73 (249)
                      ++||+|||+.|+++|++||.++|..|++.    |++||+.+|++||++++     +|.++++ +...+...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999899999996    79999999999999988     6766665 7888888889888764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=106.44  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHG------NRWAVIARLFPGRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G------~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~  106 (249)
                      +|.+.+++||.|||++|+++|.+||      ++|..||.+|+|||..||++||+.++.+..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            4778999999999999999999999      7899999999999999999999888876554

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=2.9e-14  Score=99.67  Aligned_cols=49  Identities=22%  Similarity=0.333  Sum_probs=45.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC-CCCHHHHHHHHHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHG-NRWAVIARLFP-GRTDNAVKNHWHVI  100 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp-gRT~~~cknrW~~~  100 (249)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|| |||+.||+.||..+
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            346688999999999999999999 89999999999 99999999999765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.47  E-value=2.8e-15  Score=120.66  Aligned_cols=79  Identities=24%  Similarity=0.481  Sum_probs=57.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVI   81 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~I   81 (249)
                      +++|+||+|||++|+++|..|| .+|..||..|||||+.+|+.||+++|++.+..++|+.+-    +......+..|+.|
T Consensus        52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i  126 (131)
T 3zqc_A           52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADV  126 (131)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--------
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhc
Confidence            6789999999999999999999 569999999999999999999999999999999887661    11111223457777


Q ss_pred             hhhC
Q 025697           82 ARLF   85 (249)
Q Consensus        82 A~~l   85 (249)
                      ++.|
T Consensus       127 ~k~~  130 (131)
T 3zqc_A          127 PKKL  130 (131)
T ss_dssp             ----
T ss_pred             chhc
Confidence            6654

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-15  Score=113.03  Aligned_cols=56  Identities=25%  Similarity=0.315  Sum_probs=52.7

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           49 QLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        49 ~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      .+.|.+++++||.|||++|+++|.+||.+|+.||..|||||+.||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.47  E-value=3.4e-14  Score=110.76  Aligned_cols=74  Identities=23%  Similarity=0.314  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh----cCCChhhhhhhhhccc-----CCCCCCCCCCHHHHH-HHHHHH
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKL----QGRSGKSCRLRWFNQL-----DPRINRSPFTEEEEE-RLLASH   71 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l----~~Rt~~qcr~Rw~~~L-----~p~lkkg~WT~EED~-~Llelv   71 (249)
                      ++|++||+|||+.|+++|++||.++|..|++.+    ++||+.+|++||++++     +|.++++.=++.|-. ++++|+
T Consensus        11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~   90 (105)
T 2aje_A           11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAH   90 (105)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHH
Confidence            478999999999999999999998999999965    8999999999999998     688888876666555 488888


Q ss_pred             HHhC
Q 025697           72 RIHG   75 (249)
Q Consensus        72 ~~~G   75 (249)
                      ..+|
T Consensus        91 ~~~~   94 (105)
T 2aje_A           91 GYWT   94 (105)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7766

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.46  E-value=7.5e-14  Score=102.15  Aligned_cols=47  Identities=36%  Similarity=0.493  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      ++||+||+|||++|+++|.+||.. |..||+.| |||+.||+.||+.+.
T Consensus        21 i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           21 NHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHHHH
Confidence            689999999999999999999964 99999999 999999999998543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-13  Score=101.52  Aligned_cols=46  Identities=26%  Similarity=0.575  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      .+++||+|||++|+++|++|| .+|..||+.|++||+.||+.||.++
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            478999999999999999999 7899999999999999999999997

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=4.5e-13  Score=97.98  Aligned_cols=51  Identities=18%  Similarity=0.410  Sum_probs=46.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +...+++||.+||.+|++++.+||    .+|..||.+|||||..+|++||..++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    689999999999999999999988764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=1.4e-13  Score=100.69  Aligned_cols=51  Identities=18%  Similarity=0.398  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDP   52 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p   52 (249)
                      +.+++||++||++|+.+++.||.   .+|.+||+.|||||..||+.||.+++..
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            46899999999999999999993   4799999999999999999999987653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.35  E-value=5.1e-13  Score=99.06  Aligned_cols=48  Identities=19%  Similarity=0.291  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           53 RINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        53 ~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      ...+++||.|||.+|+++|.+||++|..||++|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            356789999999999999999999999999999999999999999543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.02  E-value=1e-13  Score=104.95  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP   52 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p   52 (249)
                      +.+|+||+|||++|+++|..||. +|..||..|+|||+.||+.||.++|..
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            57899999999999999999996 799999999999999999999998864

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.32  E-value=8.8e-13  Score=101.83  Aligned_cols=51  Identities=24%  Similarity=0.566  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      +++|+||+|||++|+.+|..||. +|..||+.|||||+.+|+.||..+++..
T Consensus        54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             ccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            57999999999999999999994 6999999999999999999999988753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.32  E-value=1.2e-12  Score=104.52  Aligned_cols=58  Identities=28%  Similarity=0.514  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhhh
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRER  108 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~  108 (249)
                      .+..++++||+|||++|+++|.+||.+|..||..|||||..||+.||..++...+.+.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~   63 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHT   63 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccc
Confidence            3567899999999999999999999999999999999999999999998886655443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.27  E-value=7.3e-12  Score=93.69  Aligned_cols=48  Identities=25%  Similarity=0.446  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr~  104 (249)
                      .+||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999999995 99999995    89999999999999988754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.25  E-value=7.7e-12  Score=88.33  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHh---hhCCCCCHHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHGNRWAVIA---RLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G~~Ws~IA---~~lpgRT~~~cknrW~~~lkr  103 (249)
                      .++.+||+||++.|+++|.+||.+|+.|+   ..+++||..+++++|+.++++
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            46789999999999999999999999999   577899999999999888764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.23  E-value=5.4e-12  Score=97.99  Aligned_cols=52  Identities=25%  Similarity=0.429  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           56 RSPFTEEEEERLLASHRIHGN-RWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~-~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      +++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|...+..
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~   53 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT   53 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc
Confidence            589999999999999999995 8999999999999999999998887655443

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.22  E-value=1.5e-11  Score=98.02  Aligned_cols=54  Identities=28%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHH
Q 025697           50 LDPRINRSPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        50 L~p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr  103 (249)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            456678899999999999999999995 99999997    5899999999999999873

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.22  E-value=1.8e-11  Score=95.35  Aligned_cols=52  Identities=27%  Similarity=0.442  Sum_probs=47.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhC----CCCCHHHHHHHHHHHHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHGN-RWAVIARLF----PGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~l----pgRT~~~cknrW~~~lkr  103 (249)
                      +..++++||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+.+++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4567899999999999999999995 999999965    899999999999988864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.21  E-value=3e-11  Score=92.19  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      .+++||.|||++|++++.+||    .+|..||..|||||..+|++||..++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999887654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.20  E-value=6.5e-12  Score=110.16  Aligned_cols=55  Identities=29%  Similarity=0.577  Sum_probs=48.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 025697           52 PRINRSPFTEEEEERLLASHRIHGNR------WAVIARLFPGRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G~~------Ws~IA~~lpgRT~~~cknrW~~~lkr~~~  106 (249)
                      +.+++++||+|||++|+++|.++|++      |..||++|||||+++||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35788999999999999999999875      99999999999999999999999988765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.18  E-value=9.4e-12  Score=94.99  Aligned_cols=48  Identities=17%  Similarity=0.491  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHC---CCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERYG---PHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G---~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      .+++||+|||++|.+++++||   +..|..||+.|||||..+|+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            478999999999999999997   457999999999999999999998874

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.14  E-value=7.4e-11  Score=94.11  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHGN-RWAVIARL----FPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G~-~Ws~IA~~----lpgRT~~~cknrW~~~lkr~  104 (249)
                      ...++++||.|||+.|+++|.+||. +|+.|++.    |++||..+||+||+.+++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457889999999999999999995 99999986    48999999999999988643

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=4.7e-10  Score=78.91  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~l  101 (249)
                      ...+||+||++++++++.+||.+|..||..||+||..+|..+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.99  E-value=2.2e-10  Score=80.91  Aligned_cols=48  Identities=21%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhH---HhcCCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAE---KLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~---~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      .|++||+|||+.|+++|++||. +|..|+.   .+++||.-++++||+++..
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            6889999999999999999997 8999995   5689999999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.98  E-value=1e-09  Score=83.49  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             hhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhC-----CCCCHHHHHHHHHHHHHHHHhhh
Q 025697           40 KSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLF-----PGRTDNAVKNHWHVIMARRCRER  108 (249)
Q Consensus        40 ~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~l-----pgRT~~~cknrW~~~lkr~~~~~  108 (249)
                      .=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||+.+.++.+..+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4577899999876    89999999999999999999999999988     58999999999999998877655

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=6.4e-10  Score=78.24  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      ..++||+||++++.+++.+|| .+|..||..||+||..+|..+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            458999999999999999999 57999999999999999999997653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.83  E-value=3.9e-09  Score=91.91  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             ChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           26 NWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        26 ~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      +|..+-..|...+...+. +++.--......++||+||..++++++.+||++|..||+.|++||..||+++|+...++
T Consensus       104 ~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          104 NIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            466665555444432222 33321111234569999999999999999999999999999999999999999866543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=6.9e-09  Score=75.47  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           53 RINRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        53 ~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      ..+.++||.||+++|.+++.+|+    .+|..||..+ |||..+|+.||+.+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            35677999999999999999997    5799999998 99999999999877543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.80  E-value=2.8e-09  Score=77.55  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      .+++.||.|||++|.+++++|+.   ..|.+||+.+ |||..+|+.||..+..
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            35789999999999999999983   4699999998 8999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.69  E-value=7.6e-09  Score=99.03  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      .+||.||-.++++++.+||.+|..||+.+++||..||+++|...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999998643

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.69  E-value=1.4e-08  Score=74.04  Aligned_cols=51  Identities=18%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDP   52 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p   52 (249)
                      ...+.||.+|+++|..+++.|+.   .+|.+||..||+||..+|+.||..++..
T Consensus         6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            45678999999999999999975   4699999999999999999999987654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.57  E-value=4.8e-08  Score=85.02  Aligned_cols=48  Identities=17%  Similarity=0.350  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      ..++||+||++++++++.+|| .+|..||+.|++||..||+.+|+++.+
T Consensus       132 ~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999 679999999999999999999998764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.55  E-value=8.6e-08  Score=69.82  Aligned_cols=46  Identities=13%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      ....||.+|+.+|.+++..|+    .+|..||..|||||..+|+.||..+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            346899999999999999998    4799999999999999999999765

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.51  E-value=4.7e-08  Score=68.39  Aligned_cols=48  Identities=25%  Similarity=0.390  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHH--------CCCChhHhhH-HhcCCChhhhhhhhhcccC
Q 025697            4 RGHWRPAEDEKLRELVERY--------GPHNWNAIAE-KLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~--------G~~~W~~IA~-~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      |.+||+|||..|+.+|..|        |..-|..+|+ .+|++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4335999999 7999999999999998875

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.41  E-value=1.4e-06  Score=79.05  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhh----cc--c----------------------------
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWF----NQ--L----------------------------   50 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~----~~--L----------------------------   50 (249)
                      +.||..+...++.++.+||..+|..||..|+|+|...++..+.    ++  +                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999989999999999999877643221    11  0                            


Q ss_pred             ----------------CCCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhh------------hCCCCCHHHHHHHHH
Q 025697           51 ----------------DPRINRSPFTEEEEERLLASHRIHG----NRWAVIAR------------LFPGRTDNAVKNHWH   98 (249)
Q Consensus        51 ----------------~p~lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~------------~lpgRT~~~cknrW~   98 (249)
                                      .+..+...||++||..|+-++.+||    +.|..|..            .+-.||+.+|..|..
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            1222445899999999999999999    47999962            345799999999999


Q ss_pred             HHHHHHHhhhh
Q 025697           99 VIMARRCRERS  109 (249)
Q Consensus        99 ~~lkr~~~~~~  109 (249)
                      ++++-..+.-.
T Consensus       271 tLi~~iekE~~  281 (304)
T 1ofc_X          271 TLITLIERENI  281 (304)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99976655433

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.28  E-value=9.3e-07  Score=61.71  Aligned_cols=46  Identities=17%  Similarity=0.414  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CC-chHHHhh-hCCCCCHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIH--------GN-RWAVIAR-LFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~--------G~-~Ws~IA~-~lpgRT~~~cknrW~~~l  101 (249)
                      +.+||.|||..|++.|.+|        |+ -|..+|+ .+|++|-.+||+||...|
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999        43 3999999 899999999999996544

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1.9e-06  Score=60.71  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=44.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHHHH
Q 025697           52 PRINRSPFTEEEEERLLASHRIHGNRWAVIAR-LFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        52 p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~-~lpgRT~~~cknrW~~~  100 (249)
                      |.++..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|+..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            66778899999999999999999999999999 59999999999988644

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.20  E-value=2.9e-07  Score=66.85  Aligned_cols=44  Identities=14%  Similarity=0.355  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC---ChhHhhHHhcCCChhhhhhhhh
Q 025697            4 RGHWRPAEDEKLRELVERYGPH---NWNAIAEKLQGRSGKSCRLRWF   47 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~---~W~~IA~~l~~Rt~~qcr~Rw~   47 (249)
                      .+.||.+|+++|..+++.|+..   .|.+||+.|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            3579999999999999999753   6999999999999999999984

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.06  E-value=1e-05  Score=61.36  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             hhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCC-----CCCHHHHHHHHHHHHHHHHhhhh
Q 025697           45 RWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFP-----GRTDNAVKNHWHVIMARRCRERS  109 (249)
Q Consensus        45 Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~Ws~IA~~lp-----gRT~~~cknrW~~~lkr~~~~~~  109 (249)
                      .|..+|.    ...||.||...|++|+++|+.+|..|+..+.     .||..++|.||+.+.++.+..+.
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            4445554    3689999999999999999999999998764     79999999999999988876553

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.03  E-value=7.5e-06  Score=61.63  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHGN---RWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G~---~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      -||.|||..||....+.|.   .|+.||+.|.+|++++|++||+.+++-
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6999999999999999986   799999999999999999999988753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.02  E-value=9.4e-07  Score=64.16  Aligned_cols=43  Identities=26%  Similarity=0.482  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGN----RWAVIARLFPGRTDNAVKNHWH   98 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~----~Ws~IA~~lpgRT~~~cknrW~   98 (249)
                      .++||.+|+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999873

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=7.1e-06  Score=57.80  Aligned_cols=46  Identities=15%  Similarity=0.282  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhH-HhcCCChhhhhhhhhcc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAE-KLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~Rt~~qcr~Rw~~~   49 (249)
                      +...||+||-++..+++.+|| .+|..|++ .|++|+..+|...|...
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            457899999999999999999 47999999 48999999999888653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.84  E-value=3.4e-05  Score=55.42  Aligned_cols=44  Identities=9%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIAR-LFPGRTDNAVKNHWHV   99 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~-~lpgRT~~~cknrW~~   99 (249)
                      ..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999874

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.05  E-value=2.3e-06  Score=61.15  Aligned_cols=45  Identities=18%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHGN---RWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G~---~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      -||.|||..|+..+.+.|.   .|+.||..| +||++||.+||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999888753

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.78  E-value=1.9e-05  Score=75.68  Aligned_cols=45  Identities=18%  Similarity=0.395  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      ..+||++|-.++++++.+|| .+|..||..|++||..||+.+|.++
T Consensus       380 ~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            57899999999999999999 5899999999999999999999765

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.78  E-value=4.7e-05  Score=57.76  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      ...||+||..++.++...||.+|..||..||+||..+|..+|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999988644

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.74  E-value=2.4e-05  Score=56.20  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhH-HhcCCChhhhhhhhhc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAE-KLQGRSGKSCRLRWFN   48 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~-~l~~Rt~~qcr~Rw~~   48 (249)
                      ...||++|-++..+++.+||. +|..|++ .|++|+..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence            357999999999999999994 7999999 5899999999988864

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.70  E-value=2.8e-05  Score=59.02  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN   48 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~   48 (249)
                      ...||+||.+++.+++..|| .+|..||..||+||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            36799999999999999999 579999999999999999988864

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.70  E-value=2.8e-05  Score=59.03  Aligned_cols=47  Identities=21%  Similarity=0.441  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh-----cCCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKL-----QGRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l-----~~Rt~~qcr~Rw~~~L   50 (249)
                      +-++||.||++.|++++.+||. .|..|+..+     ++||..+++.||..+.
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3479999999999999999994 699999999     4899999999998754

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.46  E-value=0.0002  Score=60.89  Aligned_cols=101  Identities=16%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHC--CCChhHhhHH--hcCCChhhhhhhhhcc-------c----------------------
Q 025697            4 RGHWRPAEDEKLRELVERYG--PHNWNAIAEK--LQGRSGKSCRLRWFNQ-------L----------------------   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G--~~~W~~IA~~--l~~Rt~~qcr~Rw~~~-------L----------------------   50 (249)
                      ...||..|-..|+.++.+||  ...|..|+..  |.+++...+...+...       +                      
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF   86 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence            46799999999999999999  4679999875  5677764443211110       0                      


Q ss_pred             --------------------------------------C----CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhh--hC
Q 025697           51 --------------------------------------D----PRINRSPFTEEEEERLLASHRIHG-NRWAVIAR--LF   85 (249)
Q Consensus        51 --------------------------------------~----p~lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~--~l   85 (249)
                                                            .    +......||.+||..|+-.+.+|| ++|..|..  .|
T Consensus        87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l  166 (211)
T 4b4c_A           87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL  166 (211)
T ss_dssp             EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence                                                  0    000122599999999999999999 99999964  21


Q ss_pred             --C--------CC--CHHHHHHHHHHHHHHH
Q 025697           86 --P--------GR--TDNAVKNHWHVIMARR  104 (249)
Q Consensus        86 --p--------gR--T~~~cknrW~~~lkr~  104 (249)
                        .        .+  +...+..|-..+++-.
T Consensus       167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccCCChHHHHHHHHHHHHHH
Confidence              1        23  4556888877776643

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.23  E-value=0.0013  Score=61.19  Aligned_cols=102  Identities=22%  Similarity=0.367  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-CCChhhhhhhhhccc---------------------------------
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQL---------------------------------   50 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-~Rt~~qcr~Rw~~~L---------------------------------   50 (249)
                      +.||.-+=..++.++++||..+-..||..|. ++|...++ +|...+                                 
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999889999999997 88887665 222211                                 


Q ss_pred             -------------------CCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHhhh------------CCCCCHHHHH
Q 025697           51 -------------------DPR-INRSPFTEEEEERLLASHRIHG----NRWAVIARL------------FPGRTDNAVK   94 (249)
Q Consensus        51 -------------------~p~-lkkg~WT~EED~~Llelv~~~G----~~Ws~IA~~------------lpgRT~~~ck   94 (249)
                                         .+. .+...||++||..||-++.+||    +.|..|-..            |-.||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                               111 1345799999999999999998    569999432            3579999999


Q ss_pred             HHHHHHHHHHHhh
Q 025697           95 NHWHVIMARRCRE  107 (249)
Q Consensus        95 nrW~~~lkr~~~~  107 (249)
                      .|...+++-..+.
T Consensus       283 rRc~tLi~~IeKE  295 (374)
T 2y9y_A          283 RRGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998765544

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.20  E-value=0.00026  Score=53.28  Aligned_cols=45  Identities=16%  Similarity=0.403  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHHCC--CChhHhhHHhcCCChhhhhhhhhccc
Q 025697            6 HWRPAEDEKLRELVERYGP--HNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      .||.|||..|+...++.|.  ..|..||+.|++|++.|+.+|++.++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            4999999999999999986  36999999999999999999997643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.17  E-value=0.00015  Score=53.50  Aligned_cols=48  Identities=25%  Similarity=0.469  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC------C---ChhHhhHHhc----CCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERYGP------H---NWNAIAEKLQ----GRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~------~---~W~~IA~~l~----~Rt~~qcr~Rw~~~L   50 (249)
                      ....||.+|...|+++......      .   -|..||..|.    .||+.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999985311      1   4999999984    699999999998764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.23  E-value=6.2e-05  Score=53.72  Aligned_cols=45  Identities=18%  Similarity=0.384  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHHCC--CChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            6 HWRPAEDEKLRELVERYGP--HNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~--~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      .||.|||..|+..+++.|+  .-|..||+.| +|++.|+..||..++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            4999999999999999986  2599999999 8999999999988654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.14  E-value=0.0004  Score=51.19  Aligned_cols=51  Identities=14%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------chHHHhhhCC----CCCHHHHHHHHHHHHHHHHh
Q 025697           56 RSPFTEEEEERLLASHRIHGN----------RWAVIARLFP----GRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~----------~Ws~IA~~lp----gRT~~~cknrW~~~lkr~~~  106 (249)
                      ...||.+|-..||+++..+..          .|..||..|.    .||+.||+.+|..+.+.-..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999876431          5999998653    69999999999988766543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.85  E-value=0.0062  Score=46.00  Aligned_cols=47  Identities=21%  Similarity=0.440  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhc-----CCChhhhhhhhhccc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-----GRSGKSCRLRWFNQL   50 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~-----~Rt~~qcr~Rw~~~L   50 (249)
                      +-..||.||.+.|.+++..|+ ..|.-|+....     .||..+++.||..+.
T Consensus        29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999 56999999873     699999999998754

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.54  E-value=0.066  Score=48.44  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      -+.||..|...++.++.+|| .+|..||..|+|+|...|+.+......+.
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            45799999999999999999 58999999999999999998887777655

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.06  E-value=0.089  Score=36.98  Aligned_cols=48  Identities=13%  Similarity=0.102  Sum_probs=38.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC--ChhHhhHHh--cCCChhhhhhhhhcc
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPH--NWNAIAEKL--QGRSGKSCRLRWFNQ   49 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~--~W~~IA~~l--~~Rt~~qcr~Rw~~~   49 (249)
                      ..|-.||+|.-++++++|...|..  -+..|.+.|  +|.|..+++.+.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            357789999999999999999943  278998887  578888888776543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.94  E-value=0.3  Score=34.24  Aligned_cols=47  Identities=23%  Similarity=0.183  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc---hHHHhhh--CCCCCHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHGNR---WAVIARL--FPGRTDNAVKNHWHVI  100 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G~~---Ws~IA~~--lpgRT~~~cknrW~~~  100 (249)
                      ..+-.||+|..+..+++|.++|..   +..|.+.  ++|.|..+|+.|.+.+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345689999999999999999965   7888875  4589999999998655

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=93.04  E-value=0.066  Score=47.68  Aligned_cols=27  Identities=41%  Similarity=0.716  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhH
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAE   32 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~   32 (249)
                      .|+.+||..|+-.|.+||.++|..|..
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            499999999999999999999999985

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.82  E-value=0.19  Score=42.22  Aligned_cols=52  Identities=19%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CchHHHhh--hCCCCCHHHHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHG---NRWAVIAR--LFPGRTDNAVKNHWHVIMARRC  105 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G---~~Ws~IA~--~lpgRT~~~cknrW~~~lkr~~  105 (249)
                      -....||..|-..|+.++.+||   .+|..|+.  .|.++|...++..+..++....
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~   61 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI   61 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999   57999986  5889999999998877776543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=84.36  E-value=0.96  Score=41.94  Aligned_cols=45  Identities=13%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHh------------cCCChhhhhhhhh
Q 025697            3 TRGHWRPAEDEKLRELVERYGP---HNWNAIAEKL------------QGRSGKSCRLRWF   47 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l------------~~Rt~~qcr~Rw~   47 (249)
                      ++..||.+||..|+-++.+||.   ++|..|-..+            ..||+..+..|-.
T Consensus       227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~  286 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN  286 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence            3567999999999999999998   8899997664            3477777766643

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.63  E-value=3.5  Score=36.49  Aligned_cols=51  Identities=12%  Similarity=0.095  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CchHHHhh--hCCCCCHHHHHHHHHHHHHHHHh
Q 025697           56 RSPFTEEEEERLLASHRIHG---NRWAVIAR--LFPGRTDNAVKNHWHVIMARRCR  106 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G---~~Ws~IA~--~lpgRT~~~cknrW~~~lkr~~~  106 (249)
                      +++||+-|-..|+..+.+||   .+|..|+.  .|+.++...++.-+..++.....
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~   58 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD   58 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999   58999976  78899999999999888776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-20
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-08
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-09
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-04
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-12
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-07
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	5e-04
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	8e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	4e-06

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.8 bits (194), Expect = 8e-20
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 4  RGHWRPAEDEKLRELVERYGPH-----NWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSP 58
          +  +   EDE + ++V +          ++ I+  +   +G S R R+   L  R+    
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 59 FTEEEEERLLASH 71
            ++  + +    
Sbjct: 61 EVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 56 RSPFTEEEEERLLASHRIHGNR------WAVIARLFPGRTDNAVKNHWH 98
          ++ FT+EE+E +L   R +  R      +  I+   P  T N++++ + 
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 49

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +G W   ED++L +LV++YGP  W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (124), Expect = 6e-10
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
          + + P+T+EE++RL+   + +G  RW+VIA+   GR     +  WH
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (185), Expect = 8e-19
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDP 52
          +  W   EDEKL++LVE+ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
          ++ +T EE+E+L      +G + W VIA   P RTD   ++ W 
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 3e-13
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEK--LQGRSGKSCRLRWFNQLDPRIN 55
          +  W   E E ++  V++YG  NW AI++      R+    + RW       +N
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 56  RSPFTEEEEERLLASHRIHG-NRWAVIARL--FPGRTDNAVKNHWHVIM 101
           +  +T EE E + A  + +G   WA I++   F  RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 61.2 bits (148), Expect = 4e-13
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAE----KLQGRSGKSCRLRWFNQL-----DPRINRS 57
          +  AE E L E VE  G   W  +          R+    + +W   +      P+  R 
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 58 PFTEEEE-ERLLASHRIHGNR 77
              ++  +R+LA+H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 1e-12
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 56  RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIM 101
           ++ +TEEE+  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (126), Expect = 2e-10
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL 50
          +  W   ED  + +  +R G   W  IA+ L GR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTM 46

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 2e-12
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 4  RGHWRPAEDEKLRELVERYGPHNWNAIAEK--LQGRSGKSCRLRWFN 48
          R  W   ED+ LR  V +YG  NW+ I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 56  RSPFTEEEEERLLASHRIHGN-RWAVIARLFP--GRTDNAVKNHWHVIM 101
           R  +  EE++ L +  R +G   W+ I   +    RT   +K+ W  + 
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 9e-12
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEER 66
          W   E E   + + ++    W  I++ +  R+    +         ++      E   ++
Sbjct: 5  WTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 58  PFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE 107
            +T EE+E         G RW  I++L   RT   VK++       + + 
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 3e-11
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 52 PRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWH 98
           R   + ++E+E+E        H   + +IA     +T      +++
Sbjct: 13 DRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 59

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN 48
          W   E E  RE   ++   N+  IA  L+ ++   C L ++ 
Sbjct: 20 WSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYL 60

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 2e-10
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 7  WRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFN 48
          W   E+  L E V   G  NW  +A ++  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 5e-04
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 59 FTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWH 98
          +T +EE  LL +    G   W  +A     +T    + H+ 
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 5e-10
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 3  TRGHWRPAEDEKLRELVERYG---PHNWNAIAEKLQGRSGKSCRLRW 46
              W   + + L   +++Y       W+ IA  +  +S + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 4e-09
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 52  PRINRSPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVI 100
            R    P+T+ +++ L  + + +     + W  IAR  P ++       + ++
Sbjct: 8   ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 6e-10
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 56  RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMAR 103
            + +T EE+   + + R +G  +  I+ +   ++   VKN +     R
Sbjct: 5   NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62
              W   E     + + +YG  ++ AI++ +  +S    +  + N    R N     +E
Sbjct: 4  CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR-RFNIDEVLQE 61

Query: 63 EEE 65
           E 
Sbjct: 62 WEA 64

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.2 bits (117), Expect = 6e-09
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 7  WRPAEDEKLRELVERYGPHN---WNAIAEKLQGRSGKSCRLRWFNQLDPRINR 56
          W   E++     +  Y       W  +A  ++GR+ +  +  +   L   I  
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.4 bits (115), Expect = 9e-09
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 57  SPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIM 101
            P++ +E +    +  ++     +RWA +AR   GRT   VK H+ +++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 50

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 8e-07
 Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 7  WRPAEDEKLRELVERYGPHN--WNAIAEKLQGRSGKSCRLRW 46
          W    D  +  + +  G     ++ I+++L  ++      R+
Sbjct: 36 WTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 57  SPFTEEEEERLLASHRIHGNR---WAVIARLFPGRTDNAVKNHWHVIMAR 103
             +T E +  +L   +  G +   ++VI++    +T   V + +  +M  
Sbjct: 34  VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.77
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.76
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.64
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.62
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.58
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.55
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.47
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.4
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.39
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.38
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.28
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.21
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.16
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.15
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.14
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.04
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.81
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.32
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.23
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.19
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.12
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.99
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.97
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.96
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.27
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.16
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.51
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	93.43
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.11
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.44
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.28

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-19  Score=123.06  Aligned_cols=52  Identities=48%  Similarity=1.085  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      +.||+||+|||++|+++|.+||.++|..||+.|++||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.5e-21  Score=144.42  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC-----ChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHh
Q 025697            4 RGHWRPAEDEKLRELVERYGPH-----NWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIH   74 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~-----~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~   74 (249)
                      ||+||+|||++|+++|.+||..     +|..||..|||||+.||+.||.++|+|.+++++||.+||.+|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            7999999999999999999964     4999999999999999999999999999999999999999988765443

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=9.1e-19  Score=117.68  Aligned_cols=50  Identities=40%  Similarity=0.859  Sum_probs=48.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCC
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPR   53 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~   53 (249)
                      |++||+|||++|+++|.+||.++|..||..|++||+.||+.||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            78999999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.8e-17  Score=109.00  Aligned_cols=47  Identities=53%  Similarity=1.000  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +++||+|||++|+++|.+||.+|+.||.+|||||+++|++||+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999988763

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.64  E-value=6.2e-17  Score=119.47  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHH----hcCCChhhhhhhhhccc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEK----LQGRSGKSCRLRWFNQL-----DPRINRSPFTEEEEERLLASHRIHG   75 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~----l~~Rt~~qcr~Rw~~~L-----~p~lkkg~WT~EED~~Llelv~~~G   75 (249)
                      .+||+|||++|+++|.+||.++|..|++.    +++||+.||++||+++|     .+..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            48999999999999999999899999986    47999999999999988     4677889998776   455555555


Q ss_pred             CchHH
Q 025697           76 NRWAV   80 (249)
Q Consensus        76 ~~Ws~   80 (249)
                      ..|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.5e-17  Score=109.72  Aligned_cols=53  Identities=26%  Similarity=0.531  Sum_probs=49.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHH--hcCCChhhhhhhhhcccCCCCC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEK--LQGRSGKSCRLRWFNQLDPRIN   55 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~--l~~Rt~~qcr~Rw~~~L~p~lk   55 (249)
                      +|++||+|||++|+++|++||.++|..||+.  +++||+.||++||+++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            6899999999999999999998899999998  4699999999999999988764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3e-16  Score=106.07  Aligned_cols=49  Identities=33%  Similarity=0.729  Sum_probs=45.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           54 INRSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        54 lkkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +.+|+||.|||++|+++|.+|| ++|..||+.|||||+.||++||..+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            4789999999999999999999 689999999999999999999987653

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.3e-16  Score=104.78  Aligned_cols=49  Identities=31%  Similarity=0.533  Sum_probs=45.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHh--cCCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKL--QGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l--~~Rt~~qcr~Rw~~~L~   51 (249)
                      +|++||+|||+.|+++|.+||+++|..||+.+  ++||+.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            68999999999999999999998999999885  48999999999998753

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=6.5e-16  Score=102.33  Aligned_cols=47  Identities=26%  Similarity=0.601  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      |++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            689999999999999999996 69999999999999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=100.84  Aligned_cols=45  Identities=22%  Similarity=0.502  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcc
Q 025697            5 GHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      ..||+|||.+|+++|.+||.++|..||+.|++||+.||+.||.++
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            469999999999999999998999999999999999999999876

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4e-15  Score=99.54  Aligned_cols=47  Identities=32%  Similarity=0.692  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      +++||.|||++|+++|.+|| ++|..||..|||||+.||++||..+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999 689999999999999999999988774

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=96.79  Aligned_cols=48  Identities=25%  Similarity=0.485  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG-NRWAVIARLFP--GRTDNAVKNHWHVIMA  102 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G-~~Ws~IA~~lp--gRT~~~cknrW~~~lk  102 (249)
                      ++++||+|||+.|+++|.+|| ++|+.||+.++  +||+.||++||+.+.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 59999999755  9999999999988753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.2e-14  Score=96.90  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHhhh--CCCCCHHHHHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHG-NRWAVIARL--FPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G-~~Ws~IA~~--lpgRT~~~cknrW~~~lkr~  104 (249)
                      ++.+||+|||++|+++|.+|| ++|+.||+.  +++||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            468999999999999999999 689999997  56999999999999888754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-14  Score=97.56  Aligned_cols=52  Identities=25%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHhh
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRE  107 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~  107 (249)
                      ...||.|||.+|++++.+||.+|..||..||+||+.+|++||+.++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999888776543

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=5.2e-14  Score=104.25  Aligned_cols=53  Identities=26%  Similarity=0.513  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hHHHhhhCCCCCHHHHHHHHHHHHHHHHhhh
Q 025697           56 RSPFTEEEEERLLASHRIHGNR------WAVIARLFPGRTDNAVKNHWHVIMARRCRER  108 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~------Ws~IA~~lpgRT~~~cknrW~~~lkr~~~~~  108 (249)
                      +++||.|||++|+++|.+||..      |+.||..|||||+.||++||+.+|.+.+...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~   59 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV   59 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCC
Confidence            5799999999999999999964      9999999999999999999999998887543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=90.71  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      .||.|||.+|+++|.+|| ++|..||.+|+|||+.||+.||..+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-14  Score=98.69  Aligned_cols=56  Identities=13%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccCCCCCCCCCC
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT   60 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT   60 (249)
                      ...||+|||.+|+++|..|| .+|..||..||+||+.||+.||.+++.+..+.+.+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~   57 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK   57 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            36799999999999999999 589999999999999999999999987766665544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.3e-14  Score=96.02  Aligned_cols=47  Identities=19%  Similarity=0.425  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---ChhHhhHHhcCCChhhhhhhhhc
Q 025697            2 CTRGHWRPAEDEKLRELVERYGPH---NWNAIAEKLQGRSGKSCRLRWFN   48 (249)
Q Consensus         2 ~~Kg~WT~EED~~L~~~V~~~G~~---~W~~IA~~l~~Rt~~qcr~Rw~~   48 (249)
                      .++++||+|||++|+++|..||.+   +|..||+.|||||+.||+.||..
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            367899999999999999999975   49999999999999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.6e-13  Score=92.45  Aligned_cols=50  Identities=18%  Similarity=0.386  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHHHH
Q 025697           51 DPRINRSPFTEEEEERLLASHRIHGN----RWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        51 ~p~lkkg~WT~EED~~Llelv~~~G~----~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      .+...+++||.|||.+|+++|.+||.    +|..||..|||||..||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999995    599999999999999999999764

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=5.6e-13  Score=92.92  Aligned_cols=45  Identities=16%  Similarity=0.447  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC---hhHhhHHhcCCChhhhhhhhhcc
Q 025697            5 GHWRPAEDEKLRELVERYGPHN---WNAIAEKLQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~~---W~~IA~~l~~Rt~~qcr~Rw~~~   49 (249)
                      .+||+|||++|+++|..||.++   |.+||..||+||+.||+.||..+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            5899999999999999999764   99999999999999999999543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=2.7e-12  Score=89.32  Aligned_cols=47  Identities=28%  Similarity=0.601  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHGN----RWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G~----~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      .+||.|||.+|++++.+||.    +|..||..|||||..||++||+.++..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999995    599999999999999999999776543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.9e-12  Score=96.82  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=64.4

Q ss_pred             HHhcCCChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 025697           32 EKLQGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNR---WAVIARLFPGRTDNAVKNHWHVIMARR  104 (249)
Q Consensus        32 ~~l~~Rt~~qcr~Rw~~~L~p~lkkg~WT~EED~~Llelv~~~G~~---Ws~IA~~lpgRT~~~cknrW~~~lkr~  104 (249)
                      ..+|..+..++..++.+...+......||.|||+.||+.+.++|.+   |..||+.|+|||+++|++||..+|+..
T Consensus         9 ~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_           9 GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3456777788888888888888888899999999999999999976   999999999999999999998888654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.21  E-value=1.2e-11  Score=90.53  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHG-NRWAVIARL----FPGRTDNAVKNHWHVIMARRC  105 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G-~~Ws~IA~~----lpgRT~~~cknrW~~~lkr~~  105 (249)
                      +||.|||+.|+++|.+|| ++|+.|++.    +++||+.+|++||+.+++...
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~   54 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc
Confidence            899999999999999999 589999975    789999999999999986543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-11  Score=85.81  Aligned_cols=48  Identities=17%  Similarity=0.350  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhcccC
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      ...+||++||.+|.+++..|| .+|..||..||+||..||+.+|.++.+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            456799999999999999999 579999999999999999999988753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=86.44  Aligned_cols=47  Identities=19%  Similarity=0.230  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMA  102 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~lk  102 (249)
                      ..+||++|+.+|++++..||.+|..||.+|||||..+|+++|+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999987643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.2e-12  Score=87.77  Aligned_cols=46  Identities=15%  Similarity=0.202  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVI  100 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~~Ws~IA~~lpgRT~~~cknrW~~~  100 (249)
                      ...+||+||+.+|++++.+||.+|..||.+|||||..||+++|+..
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999999754

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.4e-11  Score=84.75  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhhhhhccc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      ..+||+||+++|++++..|| .+|..||..||+||..||+.+|....
T Consensus        17 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          17 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46799999999999999999 57999999999999999999997653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.4e-09  Score=81.02  Aligned_cols=47  Identities=13%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC--hhHhhHHhcCCChhhhhhhhhccc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHN--WNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~--W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      ...||.|||+.|+..++++|...  |..||+.|++|++.||+.||..++
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45799999999999999999643  999999999999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=5.5e-07  Score=60.75  Aligned_cols=44  Identities=9%  Similarity=0.116  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHhhh-CCCCCHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHGNRWAVIARL-FPGRTDNAVKNHWHVI  100 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G~~Ws~IA~~-lpgRT~~~cknrW~~~  100 (249)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.++|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3799999999999999999999999985 7999999999998643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.8e-07  Score=62.12  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCC---ChhHhhHHhcCCChhhhhhhhhccc
Q 025697            5 GHWRPAEDEKLRELVERYGPH---NWNAIAEKLQGRSGKSCRLRWFNQL   50 (249)
Q Consensus         5 g~WT~EED~~L~~~V~~~G~~---~W~~IA~~l~~Rt~~qcr~Rw~~~L   50 (249)
                      +.||++|+++|.+++.+|..+   .|.+||..| ||+..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            579999999999999999643   599999999 899999999997653

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.2e-06  Score=59.55  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 025697           57 SPFTEEEEERLLASHRIHG----NRWAVIARLFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        57 g~WT~EED~~Llelv~~~G----~~Ws~IA~~lpgRT~~~cknrW~~~l  101 (249)
                      +.||.+|+.+|..++.+|+    .+|..||..| |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    4799999999 999999999996653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=9.6e-07  Score=59.50  Aligned_cols=43  Identities=26%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhHH-hcCCChhhhhhhhhcc
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAEK-LQGRSGKSCRLRWFNQ   49 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~~-l~~Rt~~qcr~Rw~~~   49 (249)
                      .||+||-.++.+++..|| .+|..|++. +|+||..+|...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999 589999986 5999999999988754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00019  Score=48.33  Aligned_cols=48  Identities=23%  Similarity=0.352  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC--------ChhHhhH-HhcCCChhhhhhhhhcccC
Q 025697            4 RGHWRPAEDEKLRELVERYGPH--------NWNAIAE-KLQGRSGKSCRLRWFNQLD   51 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~--------~W~~IA~-~l~~Rt~~qcr~Rw~~~L~   51 (249)
                      |-+||.+||+.|+.+|+.+...        =|..+++ .++.+|-.+-++||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            5689999999999999998432        2999985 5789999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.99  E-value=0.00047  Score=47.02  Aligned_cols=47  Identities=13%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCh--hHhhHHh--cCCChhhhhhhhhcc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHNW--NAIAEKL--QGRSGKSCRLRWFNQ   49 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~W--~~IA~~l--~~Rt~~qcr~Rw~~~   49 (249)
                      .|-.||+||-++++.+|..+|...|  ..|...|  +++|..+|+.+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            5678999999999999999996544  5777775  788999998776554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.0014  Score=41.26  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHhh---hCCCCCHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRWAVIAR---LFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~Ws~IA~---~lpgRT~~~cknrW~~~l  101 (249)
                      +..||.||..-|...|+.||+.|..|-=   .-|||+...+..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            3579999999999999999999999964   346999999999887653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.96  E-value=0.0017  Score=44.17  Aligned_cols=46  Identities=24%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCch---HHHhhh--CCCCCHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGNRW---AVIARL--FPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~~W---s~IA~~--lpgRT~~~cknrW~~~l  101 (249)
                      +-.||+|+..++++++..+|..|   ..|...  ++|+|..+|+.|.+.+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999887   466554  78999999999986653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00061  Score=45.72  Aligned_cols=46  Identities=13%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---------chHHHhh-hCCCCCHHHHHHHHHHHH
Q 025697           56 RSPFTEEEEERLLASHRIHGN---------RWAVIAR-LFPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        56 kg~WT~EED~~Llelv~~~G~---------~Ws~IA~-~lpgRT~~~cknrW~~~l  101 (249)
                      +.+||.+||+.|++.|.++..         -|..+++ .+|.+|..+.|+||...|
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            468999999999999998741         2999985 789999999999996554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0025  Score=40.09  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCChhHhhHHh---cCCChhhhhhhhhc
Q 025697            4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKL---QGRSGKSCRLRWFN   48 (249)
Q Consensus         4 Kg~WT~EED~~L~~~V~~~G~~~W~~IA~~l---~~Rt~~qcr~Rw~~   48 (249)
                      |..||.||-.-|...|+++| ..|+.|-=.+   +||+.-+....|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            56899999999999999999 5699998876   58999888887764

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0054  Score=42.06  Aligned_cols=50  Identities=18%  Similarity=0.363  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CChhHhhHHhcCCChhhhhhhhhcccCC
Q 025697            3 TRGHWRPAEDEKLRELVERYGP---HNWNAIAEKLQGRSGKSCRLRWFNQLDP   52 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~---~~W~~IA~~l~~Rt~~qcr~Rw~~~L~p   52 (249)
                      .-+.|+++|=.+|-.++....+   +-|..||..++.|++..|...|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            4578999999999999997654   4599999999999999999999877644

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.027  Score=38.47  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHHH
Q 025697           55 NRSPFTEEEEERLLASHRIHGN----RWAVIARLFPGRTDNAVKNHWHV   99 (249)
Q Consensus        55 kkg~WT~EED~~Llelv~~~G~----~Ws~IA~~lpgRT~~~cknrW~~   99 (249)
                      ..+.|+++|-.+|-.++..+..    =|+.+|..++.||...|..+|..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            4468999999999999998873    39999999999999999988854

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.43  E-value=0.14  Score=32.91  Aligned_cols=46  Identities=20%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 025697           58 PFTEEEEERLLASHRIHG-NRWAVIARLFPGRTDNAVKNHWHVIMAR  103 (249)
Q Consensus        58 ~WT~EED~~Llelv~~~G-~~Ws~IA~~lpgRT~~~cknrW~~~lkr  103 (249)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+.+....-+|
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            489999999999999999 5899999999999999999877655443

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.11  E-value=0.55  Score=35.33  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             hhhhhhhhccc--CCCCCCCCCCHHHHHHHHHHHHHhC-Cc---hHHHhhh------------CCCCCHHHHHHHHHHHH
Q 025697           40 KSCRLRWFNQL--DPRINRSPFTEEEEERLLASHRIHG-NR---WAVIARL------------FPGRTDNAVKNHWHVIM  101 (249)
Q Consensus        40 ~qcr~Rw~~~L--~p~lkkg~WT~EED~~Llelv~~~G-~~---Ws~IA~~------------lpgRT~~~cknrW~~~l  101 (249)
                      .+|..-|...-  -+..++..+|+|||.-|+-++.+|| ++   |..|-..            +-.||+..+..|-.+++
T Consensus        31 ~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          31 SRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             HTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            45555554421  1334455799999999999999999 55   8887421            34799999999999998


Q ss_pred             HHHHhhh
Q 025697          102 ARRCRER  108 (249)
Q Consensus       102 kr~~~~~  108 (249)
                      +-..+.-
T Consensus       111 ~~i~kE~  117 (128)
T d1ofcx2         111 TLIEREN  117 (128)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766653

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.44  E-value=0.19  Score=32.23  Aligned_cols=39  Identities=18%  Similarity=0.424  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCChhHhhHHhcCCChhhhhh
Q 025697            6 HWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRL   44 (249)
Q Consensus         6 ~WT~EED~~L~~~V~~~G~~~W~~IA~~l~~Rt~~qcr~   44 (249)
                      .|+.-|=..++.+.++||..+-..||..|.++|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999999999887654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.28  E-value=0.33  Score=36.65  Aligned_cols=46  Identities=13%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC---hhHhhHHh------------cCCChhhhhhhhhc
Q 025697            3 TRGHWRPAEDEKLRELVERYGPHN---WNAIAEKL------------QGRSGKSCRLRWFN   48 (249)
Q Consensus         3 ~Kg~WT~EED~~L~~~V~~~G~~~---W~~IA~~l------------~~Rt~~qcr~Rw~~   48 (249)
                      ++..+|.|||.-|+-++.+||-++   |..|-..+            ..||+..+..|-..
T Consensus        48 k~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (128)
T d1ofcx2          48 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT  108 (128)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHH
Confidence            345699999999999999999888   98887654            25888888777544