Citrus Sinensis ID: 025712

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MAEAIRDDEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEcccEEEEEEcccccccccEEEEEcEEEEEccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccEEEEccccccccccEEEEccccEEEcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHccccccccHHcEEEEEEEccEEEEEEcccccccccEEEEEEEEEEEcHHHHHHHHHcEccccEccccEEcccEEEEEEEEEcccccccccccEEEEccEEcccccHHHHcccHHHccccEEccEccEccccEcEEEEEHHHEEEccccccHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEEccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maeairddegdkNQNMAAWLLGIktlkiqpyhlptlgpqDVKVRIKALGicgsdvhhfktmrcanfivkkpmvigHECAGIIEEVgsevkslevgdrvalepgiscghcslckagsynlcpemrffgspptngslahkvvhpaklcyklpdnvsleegamceplsvgvhacrranvgpetnvmimgsGPIGLVTLLAARafgapriiitdvDVQRLSIARNlgadetakvstdiEMWGRYKMQWVQALM
Flexible Loop (DISEMBL)
maeairddegdknqNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIarnlgadetakvstdiemwGRYKMQWVQALM
Low Complexity Region (SEG)
MAEAIRDDEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM
Disordered region (IsUnstruct)
***************MAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ***
Disordered Region (DISOPRED)
******************WLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM
Disordered Region (DISEMBL)
***********KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM
Disordered Region (DISPRO)
*********GDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQAL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEAIRDDEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q1PSI9	366	L-idonate 5-dehydrogenase	yes	no	0.891	0.606	0.837	1e-110
Q00796	357	Sorbitol dehydrogenase OS	yes	no	0.891	0.621	0.490	6e-59
Q5R5F3	357	Sorbitol dehydrogenase OS	yes	no	0.891	0.621	0.495	7e-59
Q4R639	357	Sorbitol dehydrogenase OS	N/A	no	0.891	0.621	0.486	7e-59
Q58D31	356	Sorbitol dehydrogenase OS	yes	no	0.891	0.623	0.477	2e-57
Q64442	357	Sorbitol dehydrogenase OS	yes	no	0.891	0.621	0.463	6e-57
A1D9C9	358	Probable D-xylulose reduc	N/A	no	0.875	0.608	0.5	6e-57
P27867	357	Sorbitol dehydrogenase OS	yes	no	0.891	0.621	0.463	8e-57
Q4WAU7	358	Probable D-xylulose reduc	yes	no	0.875	0.608	0.495	1e-56
B0YC65	358	Probable D-xylulose reduc	N/A	no	0.875	0.608	0.495	1e-56

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/222 (83%), Positives = 208/222 (93%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMV 73
           +NMAAWLLGIKTLKIQPY LP+LGP DVKVRIKA+GICGSDVHHFKTMRCANFIVKKPMV
Sbjct: 19  ENMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMV 78

Query: 74  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 133
           IGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPTNG
Sbjct: 79  IGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNG 138

Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
           SLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIGLV
Sbjct: 139 SLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLV 198

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           T+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 199 TMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 240

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 8

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 153/222 (68%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 6   KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 65

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 66  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 125

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 126 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 185

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 186 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 227

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score =  227 bits (578), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 153/222 (68%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 6   KPSNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKP 65

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 66  MVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPD 125

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGAM EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 126 DGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 185

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 186 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 227

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score =  227 bits (578), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 156/222 (70%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K +N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 6   KPKNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKP 65

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG+   +   CK+G YNL P + F  +PP 
Sbjct: 66  MVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPD 125

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 126 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIG 185

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +V+LL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 186 VVSLLVAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQISKE 227

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/222 (47%), Positives = 154/222 (69%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K +N++  + G   L+++ Y +P  GP +V +++ ++GICGSDVH+++  R  +F+VKKP
Sbjct: 5   KPENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKP 64

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G + +VGS V+ L+ GDRVA+EPG        CK G YNL P + F  +PP 
Sbjct: 65  MVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPD 124

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRRA V     V++ G+GPIG
Sbjct: 125 DGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIG 184

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           LV+LLAA+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 185 LVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQISNE 226

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 154/222 (69%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K +N++  + G   ++++ Y +P LGP DV +++ ++GICGSDVH+++  R  +F+VKKP
Sbjct: 6   KGENLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKP 65

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE AG + +VG  VK L+ GDRVA+EPG+       CK G YNL P + F  +PP 
Sbjct: 66  MVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPD 125

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPD+V+ EEGA+ EPLSVG++ACRR +V     V++ G+GP+G
Sbjct: 126 DGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPVG 185

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++TD+   RL+ A+ +GAD T +V  +
Sbjct: 186 MVTLLVAKAMGAAQVVVTDLSASRLTKAKEVGADFTIQVGKE 227

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|A1D9C9|XYL2_NEOFI Probable D-xylulose reductase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=xdhA PE=3 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/222 (50%), Positives = 146/222 (65%), Gaps = 4/222 (1%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           QN++  L GI  +K +   +P L  P DV V +K  GICGSDVH+++      F+VK PM
Sbjct: 9   QNLSFVLEGIHQVKFEDRPIPELKDPHDVLVNVKFTGICGSDVHYWEHGSIGQFVVKDPM 68

Query: 73  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
           V+GHE +G+I +VGS V  L+VGDRVA+EPGI C  C  CKAG YNLC +M F  +PP +
Sbjct: 69  VLGHESSGVISKVGSAVTGLKVGDRVAMEPGIPCRRCEPCKAGKYNLCEKMAFAATPPYD 128

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
           G+LA   V P   CYKLPDN+SL+EGA+ EPL V VH  R+A+V P  +V++ G+GP+GL
Sbjct: 129 GTLAKFYVLPEDFCYKLPDNISLQEGALMEPLGVAVHIVRQASVTPGQSVIVFGAGPVGL 188

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET---AKVS 231
           +    A+AFGA +II  D+   RL  A+   A  T   AKVS
Sbjct: 189 LCCAVAKAFGAAKIIAVDIQKPRLDFAKRYAATSTFEPAKVS 230

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score =  220 bits (560), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 154/222 (69%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K +N++  + G   ++++ Y +P LGP DV +++ ++GICGSDVH+++  R  +F+VKKP
Sbjct: 6   KGENLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKP 65

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE AG + +VG  VK L+ GDRVA+EPG+       CK G YNL P + F  +PP 
Sbjct: 66  MVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPD 125

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPD+V+ EEGA+ EPLSVG++ACRR +V     V++ G+GPIG
Sbjct: 126 DGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPIG 185

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++ D+   RL+ A+ +GAD T +V+ +
Sbjct: 186 IVTLLVAKAMGASQVVVIDLSASRLAKAKEVGADFTIQVAKE 227

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4WAU7|XYL2_ASPFU Probable D-xylulose reductase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xdhA PE=3 SV=2

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 146/222 (65%), Gaps = 4/222 (1%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           QN++  L GI  +K +   +P L  P DV V +K  GICGSDVH+++      F+VK PM
Sbjct: 9   QNLSFVLEGIHQVKFEDRPIPELKDPHDVLVNVKFTGICGSDVHYWEHGSIGQFVVKGPM 68

Query: 73  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
           V+GHE +G+I +VGS V  L+VGDRVA+EPGI C  C  CKAG YNLC +M F  +PP +
Sbjct: 69  VLGHESSGVISKVGSAVTGLKVGDRVAMEPGIPCRRCEPCKAGKYNLCEKMAFAATPPYD 128

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
           G+LA   V P   CYKLPDN+SL+EGA+ EPL V VH  ++A+V P  +V++ G+GP+GL
Sbjct: 129 GTLAKFYVLPEDFCYKLPDNISLQEGALMEPLGVAVHIVKQASVTPGQSVIVFGAGPVGL 188

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET---AKVS 231
           +    A+AFGA +II  D+   RL  A+   A  T   AKVS
Sbjct: 189 LCCAVAKAFGAAKIIAVDIQKARLDFAKKYAATSTFEPAKVS 230

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|B0YC65|XYL2_ASPFC Probable D-xylulose reductase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=xdhA PE=3 SV=2

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 146/222 (65%), Gaps = 4/222 (1%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           QN++  L GI  +K +   +P L  P DV V +K  GICGSDVH+++      F+VK PM
Sbjct: 9   QNLSFVLEGIHQVKFEDRPIPELKDPHDVLVNVKFTGICGSDVHYWEHGSIGQFVVKGPM 68

Query: 73  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
           V+GHE +G+I +VGS V  L+VGDRVA+EPGI C  C  CKAG YNLC +M F  +PP +
Sbjct: 69  VLGHESSGVISKVGSAVTGLKVGDRVAMEPGIPCRRCEPCKAGKYNLCEKMAFAATPPYD 128

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
           G+LA   V P   CYKLPDN+SL+EGA+ EPL V VH  ++A+V P  +V++ G+GP+GL
Sbjct: 129 GTLAKFYVLPEDFCYKLPDNISLQEGALMEPLGVAVHIVKQASVTPGQSVIVFGAGPVGL 188

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET---AKVS 231
           +    A+AFGA +II  D+   RL  A+   A  T   AKVS
Sbjct: 189 LCCAVAKAFGAAKIIAVDIQKARLDFAKKYAATSTFEPAKVS 230

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
359490368	366	PREDICTED: L-idonate 5-dehydrogenase-lik	0.891	0.606	0.842	1e-109
224122460	359	predicted protein [Populus trichocarpa]	0.887	0.615	0.850	1e-109
225469314	366	PREDICTED: L-idonate 5-dehydrogenase [Vi	0.891	0.606	0.837	1e-109
297741126	346	unnamed protein product [Vitis vinifera]	0.883	0.635	0.845	1e-108
297741127	346	unnamed protein product [Vitis vinifera]	0.883	0.635	0.840	1e-108
255539583	326	alcohol dehydrogenase, putative [Ricinus	0.903	0.690	0.817	1e-107
147767778	368	hypothetical protein VITISV_028585 [Viti	0.891	0.603	0.825	1e-106
224120122	364	predicted protein [Populus trichocarpa]	0.899	0.615	0.767	1e-101
350538545	355	sorbitol related enzyme [Solanum lycoper	0.911	0.639	0.748	1e-100
8096347	371	NAD-dependent sorbitol dehydrogenase [Er	0.931	0.625	0.756	1e-100

>gi|359490368|ref|XP_002267662.2| PREDICTED: L-idonate 5-dehydrogenase-like [Vitis vinifera] gi|74273318|gb|ABA01327.1| L-idonate dehydrogenase [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/222 (84%), Positives = 209/222 (94%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMV 73
           +NMAAWLLGIKTLKIQPY LP+LGP DVKVRIKA+GICGSDVHHFKTMRCANFIVKKPMV
Sbjct: 19  ENMAAWLLGIKTLKIQPYILPSLGPHDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMV 78

Query: 74  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 133
           IGHECAGIIEEVGSEVK+L VGDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPTNG
Sbjct: 79  IGHECAGIIEEVGSEVKNLVVGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNG 138

Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
           SLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIGLV
Sbjct: 139 SLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLV 198

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           T+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 199 TMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122460|ref|XP_002318842.1| predicted protein [Populus trichocarpa] gi|222859515|gb|EEE97062.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/221 (85%), Positives = 206/221 (93%)

Query: 15  NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
           N AAWLLGIKTLKIQPYHLP LGP DVKVRIKALGICGSDVHHFKTMRCA+F+VKKPMVI
Sbjct: 13  NKAAWLLGIKTLKIQPYHLPPLGPLDVKVRIKALGICGSDVHHFKTMRCASFVVKKPMVI 72

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
           GHECAGIIE+VGSEVKSL VGDRVALEPGISC  C+LCK G YNLCPEM+FFGSPPTNGS
Sbjct: 73  GHECAGIIEDVGSEVKSLAVGDRVALEPGISCRRCNLCKEGRYNLCPEMKFFGSPPTNGS 132

Query: 135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
           LA+KVVHPA LC+KLPDNVSLEEGAMCEPLSVGVHACRRA +GPETNV+IMG+GPIGL+T
Sbjct: 133 LANKVVHPANLCFKLPDNVSLEEGAMCEPLSVGVHACRRAQIGPETNVLIMGAGPIGLIT 192

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           LLA+RAFGAPR++I DVD +RLSIA+NLGADE   VST+I+
Sbjct: 193 LLASRAFGAPRVVIVDVDDRRLSIAKNLGADEIIHVSTNIQ 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469314|ref|XP_002269936.1| PREDICTED: L-idonate 5-dehydrogenase [Vitis vinifera] gi|229830633|sp|Q1PSI9.2|IDND_VITVI RecName: Full=L-idonate 5-dehydrogenase

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/222 (83%), Positives = 208/222 (93%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMV 73
           +NMAAWLLGIKTLKIQPY LP+LGP DVKVRIKA+GICGSDVHHFKTMRCANFIVKKPMV
Sbjct: 19  ENMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMV 78

Query: 74  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 133
           IGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPTNG
Sbjct: 79  IGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNG 138

Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
           SLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIGLV
Sbjct: 139 SLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLV 198

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           T+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 199 TMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741126|emb|CBI31857.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/220 (84%), Positives = 207/220 (94%)

Query: 16  MAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG 75
           MAAWLLGIKTLKIQPY LP+LGP DVKVRIKA+GICGSDVHHFKTMRCANFIVKKPMVIG
Sbjct: 1   MAAWLLGIKTLKIQPYILPSLGPHDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIG 60

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HECAGIIEEVGSEVK+L VGDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPTNGSL
Sbjct: 61  HECAGIIEEVGSEVKNLVVGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSL 120

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTL 195
           A++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIGLVT+
Sbjct: 121 ANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTM 180

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 181 LAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741127|emb|CBI31858.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 206/220 (93%)

Query: 16  MAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG 75
           MAAWLLGIKTLKIQPY LP+LGP DVKVRIKA+GICGSDVHHFKTMRCANFIVKKPMVIG
Sbjct: 1   MAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIG 60

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HECAGIIEEVGSEVK+L  GDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPTNGSL
Sbjct: 61  HECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSL 120

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTL 195
           A++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIGLVT+
Sbjct: 121 ANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTM 180

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 181 LAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539583|ref|XP_002510856.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223549971|gb|EEF51458.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 204/225 (90%)

Query: 11  DKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK 70
           ++  N AAWLLGIKTLKIQPYHLP LGP DVKVRIKALGICGSDVHHFKTMRCANFIVKK
Sbjct: 11  EEEDNKAAWLLGIKTLKIQPYHLPPLGPHDVKVRIKALGICGSDVHHFKTMRCANFIVKK 70

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
           PMVIGHECAG+IEEVGS VKSL VGDRVALEPGISC  C+LCK G YNLCPEM+ FGSPP
Sbjct: 71  PMVIGHECAGVIEEVGSGVKSLAVGDRVALEPGISCRRCNLCKDGRYNLCPEMKLFGSPP 130

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 190
           TNG+LA+KVVHPA LC+KLP+NVS+EEGAMCEPLSVGVHACRRA +GPETN++I+G+GPI
Sbjct: 131 TNGALANKVVHPANLCFKLPENVSMEEGAMCEPLSVGVHACRRAKIGPETNILIIGAGPI 190

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           GL+TLLAARAFGAPR++I DVD  RLSIA+NL ADE  KVST+ E
Sbjct: 191 GLITLLAARAFGAPRVVIVDVDDGRLSIAKNLAADEIIKVSTNTE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767778|emb|CAN73609.1| hypothetical protein VITISV_028585 [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/224 (82%), Positives = 207/224 (92%), Gaps = 2/224 (0%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTLG--PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           +NMAAWLLGIKTLKIQPY LP+LG  P DVKV IKA+GICGSDVHHFKTMRCANFIVKKP
Sbjct: 19  ENMAAWLLGIKTLKIQPYILPSLGIIPYDVKVXIKAVGICGSDVHHFKTMRCANFIVKKP 78

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MVIGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CSLC+ G YNLC EM+FFGSPPT
Sbjct: 79  MVIGHECAGIIEEVGSEVKNLVXGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPT 138

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           NGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HACRRANVGPETNV+IMGSGPIG
Sbjct: 139 NGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIG 198

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           LVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +VST+I+
Sbjct: 199 LVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQ 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120122|ref|XP_002318247.1| predicted protein [Populus trichocarpa] gi|222858920|gb|EEE96467.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/224 (76%), Positives = 203/224 (90%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           + +NMAAWLLG+ TLKIQP+ LP LGP DV+VR+KA+GICGSDVH+ KTM+CA+F+VK+P
Sbjct: 15  EEENMAAWLLGVNTLKIQPFKLPCLGPHDVRVRMKAVGICGSDVHYLKTMKCAHFVVKEP 74

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MVIGHECAGIIEEVGSE+KSL  GDRVALEPGISC  C LCK G YNLCP+M+FF +PP 
Sbjct: 75  MVIGHECAGIIEEVGSEIKSLVPGDRVALEPGISCWRCYLCKEGRYNLCPDMKFFATPPV 134

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +GSLA++VVHPA LC+KLPDNVSLEEGAMCEPLSVGVHACRRAN+GPETNV++MG+GPIG
Sbjct: 135 HGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIG 194

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           LVTLLAARAFGAPRI+I DVD  RLS+A++LGADE  KVST+++
Sbjct: 195 LVTLLAARAFGAPRIVIVDVDDYRLSVAKDLGADEIVKVSTNLQ 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538545|ref|NP_001234092.1| sorbitol related enzyme [Solanum lycopersicum] gi|78183416|dbj|BAE47038.1| sorbitol related enzyme [Solanum lycopersicum]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 204/227 (89%)

Query: 9   EGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIV 68
           +G  ++NMAAWLLG+ TLKIQP++LP LGP DV+VR+KA+GICGSDVH+ KTMRCA+F+V
Sbjct: 3   KGGSDENMAAWLLGVNTLKIQPFNLPALGPHDVRVRMKAVGICGSDVHYLKTMRCADFVV 62

Query: 69  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 128
           K+PMVIGHECAGIIEEVG EVK+L  GDRVALEPGISC  C+LCK G YNLCPEM+FF +
Sbjct: 63  KEPMVIGHECAGIIEEVGGEVKTLVPGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFAT 122

Query: 129 PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSG 188
           PP +GSLA++VVHPA LC+KLPD++SLEEGAMCEPLSVGVHACRRANVGPETN++++G+G
Sbjct: 123 PPVHGSLANQVVHPADLCFKLPDDISLEEGAMCEPLSVGVHACRRANVGPETNILVLGAG 182

Query: 189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           PIGLVTLLAARAFGAPRI+I DVD  RLS+A+ LGAD+  KVS +I+
Sbjct: 183 PIGLVTLLAARAFGAPRIVIVDVDDYRLSVAKKLGADDIVKVSINIQ 229

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8096347|dbj|BAA95897.1| NAD-dependent sorbitol dehydrogenase [Eriobotrya japonica]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/234 (75%), Positives = 203/234 (86%), Gaps = 2/234 (0%)

Query: 2   AEAIRDDEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTM 61
            EAI  D   + +NMAAWLLG+K LKIQPY LP LGP DV+VR+KA+GICGSDVHHFK M
Sbjct: 17  GEAINGDV--QQENMAAWLLGVKNLKIQPYKLPNLGPHDVRVRLKAVGICGSDVHHFKNM 74

Query: 62  RCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP 121
           RC +FIVK+PMVIGHECAGIIEEVGSEV+ L  GDRVALEPGISC  C+LCK G YNLC 
Sbjct: 75  RCVDFIVKEPMVIGHECAGIIEEVGSEVEDLVPGDRVALEPGISCKRCNLCKQGRYNLCR 134

Query: 122 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETN 181
           +M+FFGSPP NG LA++VVHP  LC+KLPDNVSLEEGAMCEPLSVG+HACRRANV  ETN
Sbjct: 135 KMKFFGSPPNNGCLANQVVHPGDLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVCQETN 194

Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           V+++G+GPIGLVTLLAARAFGAPRI+I DV+ +RLSIA++LGADE  KVST+IE
Sbjct: 195 VLVVGAGPIGLVTLLAARAFGAPRIVIADVNDERLSIAKSLGADEVVKVSTNIE 248

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2173093	364	AT5G51970 [Arabidopsis thalian	0.963	0.659	0.707	1e-93
WB|WBGene00011003	347	R04B5.5 [Caenorhabditis elegan	0.867	0.622	0.518	1.8e-62
WB|WBGene00011004	347	R04B5.6 [Caenorhabditis elegan	0.867	0.622	0.509	1.2e-60
FB|FBgn0022359	360	Sodh-2 "Sorbitol dehydrogenase	0.879	0.608	0.511	3.5e-59
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	0.879	0.608	0.493	2.2e-57
UNIPROTKB|Q5R5F3	357	SORD "Sorbitol dehydrogenase"	0.891	0.621	0.495	2.5e-56
UNIPROTKB|Q00796	357	SORD "Sorbitol dehydrogenase"	0.891	0.621	0.490	3.3e-56
UNIPROTKB|Q4R639	357	SORD "Sorbitol dehydrogenase"	0.891	0.621	0.486	3.3e-56
UNIPROTKB|H0YLA4	336	SORD "Sorbitol dehydrogenase"	0.827	0.613	0.509	7.8e-55
UNIPROTKB|Q58D31	356	SORD "Sorbitol dehydrogenase"	0.891	0.623	0.477	9.9e-55

TAIR|locus:2173093 AT5G51970 [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 172/243 (70%), Positives = 209/243 (86%)

Query:     9 EGDK--NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF 66
             EG K   +NMAAWL+GI TLKIQP+ LP++GP DV+VR+KA+GICGSDVH+ KTMRCA+F
Sbjct:    10 EGSKVEEENMAAWLVGINTLKIQPFLLPSVGPHDVRVRMKAVGICGSDVHYLKTMRCADF 69

Query:    67 IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
             +VK+PMVIGHECAGIIEEVG EVK L VGDRVALEPGISC  C+LC+ G YNLCPEM+FF
Sbjct:    70 VVKEPMVIGHECAGIIEEVGEEVKHLVVGDRVALEPGISCWRCNLCREGRYNLCPEMKFF 129

Query:   127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG 186
              +PP +GSLA++VVHPA LC+KLP+NVSLEEGAMCEPLSVGVHACRRA VGPETNV++MG
Sbjct:   130 ATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRAEVGPETNVLVMG 189

Query:   187 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ 246
             +GPIGLVT+LAARAF  PRI+I DVD  RL++A+ LGADE  +V+T++E  G  +++ +Q
Sbjct:   190 AGPIGLVTMLAARAFSVPRIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGS-EVEQIQ 248

Query:   247 ALM 249
               M
Sbjct:   249 KAM 251

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

WB|WBGene00011003 R04B5.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 112/216 (51%), Positives = 159/216 (73%)

Query:    15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
             N++A L G+  L+++   +P  GP  V V++  +GICGSDVH++       F+VK+PM++
Sbjct:     5 NLSAVLYGVDDLRLEQVPIPKPGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEPMIV 64

Query:    75 GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
             GHE +GI+ EVG+EVK L+VGDR+A+EPG+ C  C  CK G YNLCPEMRFF +PP +G+
Sbjct:    65 GHETSGIVSEVGNEVKHLKVGDRIAMEPGLPCKLCEHCKTGRYNLCPEMRFFATPPVHGT 124

Query:   135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
             L+  VVH A  C+KLPDN+S E+GA+ EPLSV +HACRR NV     V+++G+GPIG++ 
Sbjct:   125 LSRFVVHDADFCFKLPDNLSFEDGALIEPLSVAIHACRRGNVQMGHRVLVLGAGPIGVLN 184

Query:   195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230
             L+ A+A GA +++ITD+D  RL++A+ LGAD T  V
Sbjct:   185 LITAKAVGAGKVVITDLDDGRLALAKKLGADATINV 220

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

WB|WBGene00011004 R04B5.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 110/216 (50%), Positives = 156/216 (72%)

Query:    15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
             N++A L GI  L+++   +   GP+ V V+I  +GICGSDVH        +F+VK+PMV+
Sbjct:     5 NLSAVLYGINDLRLEQAPISKPGPRQVLVKINTVGICGSDVHFLTHGAIGSFVVKEPMVL 64

Query:    75 GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
             GHE +G++ E+GSEVK  +VGDR+A+EPG+ C  C  CK G YNLCP+MRFF +PP NG+
Sbjct:    65 GHESSGVVSEIGSEVKGFKVGDRIAMEPGLPCKLCEHCKIGRYNLCPDMRFFATPPVNGA 124

Query:   135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
             L+  VVH A  C+KLPDN+S E+GA+ EPLSV + ACRR  V     ++++G+GPIG++ 
Sbjct:   125 LSRFVVHDADFCFKLPDNLSFEDGALLEPLSVAIQACRRGTVQMGQKILVLGAGPIGVLN 184

Query:   195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230
             LL A+A GA +++ITD++ +RL++AR LGAD T  V
Sbjct:   185 LLTAKAIGASKVVITDLNDERLALARLLGADATINV 220

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

FB|FBgn0022359 Sodh-2 "Sorbitol dehydrogenase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 112/219 (51%), Positives = 157/219 (71%)

Query:    15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
             N+ A L GI+ L+++   +P +   +V + + ++GICGSDVH+    R  +F++ KPM+I
Sbjct:     5 NLTAVLHGIEDLRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDFVLTKPMII 64

Query:    75 GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
             GHE AG++ ++G +V +L+VGDRVA+EPG+ C +C  CK G YNLC +M F  +PP +G+
Sbjct:    65 GHEAAGVVAKLGKKVTTLKVGDRVAIEPGVPCRYCDHCKQGRYNLCADMVFCATPPYDGN 124

Query:   135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
             L     H A  C+KLPD+VS+EEGA+ EPLSVGVHACRRA VG  + V+I+G+GPIGLVT
Sbjct:   125 LTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKVLILGAGPIGLVT 184

Query:   195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             LLAA+A GA  I+ITD+  QRL +A+ LGA  T  +  D
Sbjct:   185 LLAAQAMGASEILITDLVQQRLDVAKELGATHTLLLQRD 223

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 108/219 (49%), Positives = 155/219 (70%)

Query:    15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
             N+ A L GI+ ++++   +P +   +V + + ++GICGSDVH+    R  +F++ KPM+I
Sbjct:     5 NLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAHGRIGDFVLTKPMII 64

Query:    75 GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
             GHE AG++ ++G +V +L+VGDRVA+EPG+ C  C  CK G YNLCP M F  +PP +G+
Sbjct:    65 GHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCDHCKQGKYNLCPGMVFCATPPYDGN 124

Query:   135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
             L     H A  C+KLPD+V++EEGA+ EPLSVGVHAC+RA V   + V+I+G+GPIGLVT
Sbjct:   125 LTRYYKHAADFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVT 184

Query:   195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             L+AA+A GA  I+ITD+  QRL +A+ LGA  T  +  D
Sbjct:   185 LMAAQAMGASEILITDLVQQRLDVAKELGATHTLLLKRD 223

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q5R5F3 SORD "Sorbitol dehydrogenase" [Pongo abelii (taxid:9601)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 110/222 (49%), Positives = 153/222 (68%)

Query:    12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
             K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct:     6 KPSNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKP 65

Query:    72 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
             MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct:    66 MVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPD 125

Query:   132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
             +G+L     H A  CYKLPDNV+ EEGAM EPLSVG+HACRR  V     V++ G+GPIG
Sbjct:   126 DGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 185

Query:   192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct:   186 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 227

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|Q00796 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 109/222 (49%), Positives = 153/222 (68%)

Query:    12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
             K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct:     6 KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 65

Query:    72 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
             MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct:    66 MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 125

Query:   132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
             +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct:   126 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 185

Query:   192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct:   186 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 227

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;IDA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006062 "sorbitol catabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=IDA

GO:0051164 "L-xylitol metabolic process" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0030317 "sperm motility" evidence=ISS;NAS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|Q4R639 SORD "Sorbitol dehydrogenase" [Macaca fascicularis (taxid:9541)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 108/222 (48%), Positives = 156/222 (70%)

Query:    12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
             K +N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct:     6 KPKNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKP 65

Query:    72 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
             MV+GHE +G +E+VGS VK L+ GDRVA+EPG+   +   CK+G YNL P + F  +PP 
Sbjct:    66 MVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPD 125

Query:   132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
             +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct:   126 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIG 185

Query:   192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             +V+LL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct:   186 VVSLLVAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQISKE 227

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|H0YLA4 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 105/206 (50%), Positives = 145/206 (70%)

Query:    28 IQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS 87
             ++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKPMV+GHE +G +E+VGS
Sbjct:     1 MENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGS 60

Query:    88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCY 147
              VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP +G+L     H A  CY
Sbjct:    61 SVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCY 120

Query:   148 KLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRII 207
             KLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG+VTLL A+A GA +++
Sbjct:   121 KLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVV 180

Query:   208 ITDVDVQRLSIARNLGADETAKVSTD 233
             +TD+   RLS A+ +GAD   ++S +
Sbjct:   181 VTDLSATRLSKAKEIGADLVLQISKE 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q58D31 SORD "Sorbitol dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 106/222 (47%), Positives = 154/222 (69%)

Query:    12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
             K +N++  + G   L+++ Y +P  GP +V +++ ++GICGSDVH+++  R  +F+VKKP
Sbjct:     5 KPENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKP 64

Query:    72 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
             MV+GHE +G + +VGS V+ L+ GDRVA+EPG        CK G YNL P + F  +PP 
Sbjct:    65 MVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPD 124

Query:   132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
             +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRRA V     V++ G+GPIG
Sbjct:   125 DGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIG 184

Query:   192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             LV+LLAA+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct:   185 LVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQISNE 226

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1PSI9	IDND_VITVI	1, ., 1, ., 1, ., n, 8	0.8378	0.8915	0.6065	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-158
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-123
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-72
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-71
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	4e-68
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-66
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	4e-63
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-62
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	5e-61
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-57
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-56
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	3e-51
cd05281	341	cd05281, TDH, Threonine dehydrogenase	6e-51
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	3e-48
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	1e-45
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	4e-44
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	3e-43
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	4e-43
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	1e-42
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-42
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	1e-41
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-41
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	1e-40
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	7e-40
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	9e-40
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-38
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	7e-38
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	7e-38
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-37
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-37
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-37
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	8e-37
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	6e-36
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-35
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	4e-35
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	8e-35
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	4e-33
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	1e-32
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-32
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	1e-32
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-32
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-32
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-31
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	3e-30
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	5e-29
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-28
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-28
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	4e-28
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	4e-28
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-28
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	5e-28
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	8e-26
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-22
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-21
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	3e-21
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	6e-21
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-20
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	8e-20
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	4e-19
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	4e-19
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	4e-19
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	5e-19
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-18
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-18
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-18
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-18
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	6e-18
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	9e-18
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-17
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	5e-17
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	9e-17
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	1e-16
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-16
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	3e-16
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	4e-16
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	5e-16
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	9e-16
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-15
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	3e-15
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	3e-15
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	1e-14
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	1e-14
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-13
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	3e-13
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	1e-12
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-11
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	1e-11
cd08237	341	cd08237, ribitol-5-phosphate_DH, ribitol-5-phospha	1e-11
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	3e-11
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	3e-11
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	6e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-09
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	4e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-08
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-08
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	4e-08
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-06
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-06
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-06
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-06
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	3e-05
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	5e-04
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	0.001

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  442 bits (1138), Expect = e-158
 Identities = 174/229 (75%), Positives = 205/229 (89%)

Query: 7   DDEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF 66
           +  G + +NMAAWL+G+ TLKIQP+ LP LGP DV+VR+KA+GICGSDVH+ KTMRCA+F
Sbjct: 10  EGSGVEEENMAAWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADF 69

Query: 67  IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
           +VK+PMVIGHECAGIIEEVGSEVK L VGDRVALEPGISC  C+LCK G YNLCPEM+FF
Sbjct: 70  VVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFF 129

Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG 186
            +PP +GSLA++VVHPA LC+KLP+NVSLEEGAMCEPLSVGVHACRRAN+GPETNV++MG
Sbjct: 130 ATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMG 189

Query: 187 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           +GPIGLVT+LAARAFGAPRI+I DVD +RLS+A+ LGADE   VST+IE
Sbjct: 190 AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIE 238

Length = 364

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  354 bits (910), Expect = e-123
 Identities = 121/217 (55%), Positives = 158/217 (72%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           AA L G   L+++   +P  GP +V VR++A+GICGSDVH++K  R  +F+VK+PMV+GH
Sbjct: 1   AAVLHGPGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGH 60

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           E AG +  VGS V  L+VGDRVA+EPG+ C  C  CK+G YNLCP+MRF  +PP +G+L 
Sbjct: 61  ESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLC 120

Query: 137 HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL 196
             V HPA  C+KLPDNVSLEEGA+ EPLSVGVHACRRA V P   V++ G+GPIGL+T  
Sbjct: 121 RYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAA 180

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
            A+AFGA ++++TD+D  RL  A+ LGA  T  V T+
Sbjct: 181 VAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTE 217

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  222 bits (568), Expect = 9e-72
 Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 8/214 (3%)

Query: 16  MAAWLL-GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH-HFKTMRCANFIVKKPMV 73
           M A +L G   L+ +    P  GP +V V++KA GICGSD+  +  T          P+V
Sbjct: 1   MKALVLTGPGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-----YHPPLV 55

Query: 74  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 133
           +GHE +G +EEVGS V  L VGDRVA+ P + CG C  CK G Y+LC    + GS   +G
Sbjct: 56  LGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSR-RDG 114

Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
           + A  V  PA+   K+PD+V  EE AM EP +V +HA R A +     V+++G+G IGL+
Sbjct: 115 AFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLL 174

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
            +   +  GA R+I  D+D ++L++AR LGAD+T
Sbjct: 175 AIQWLKILGAKRVIAVDIDDEKLAVARELGADDT 208

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  221 bits (566), Expect = 2e-71
 Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 4/216 (1%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
               L+++    P  GP +V+VR+ A GICGSD+H+++        +++PMV+GHE +G+
Sbjct: 5   AAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGV 64

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS----PPTNGSLAH 137
           +E VG  V  L  G RVA+ P   CG C  C+AG  NLC  MRF GS    P   G    
Sbjct: 65  VEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFRE 124

Query: 138 KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
            +V  A  C  LPD +SL   A+ EPL+V +HA  RA       V++ G+GPIG + + A
Sbjct: 125 YLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAA 184

Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           AR  GA  I+ TD+    L++AR +GADET  ++ D
Sbjct: 185 ARRAGAAEIVATDLADAPLAVARAMGADETVNLARD 220

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  213 bits (544), Expect = 4e-68
 Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 12/221 (5%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK------ 70
           AA   G K ++++    P + P +VK+++   GICGSD+H +  +    FI  +      
Sbjct: 3   AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEY--LDGPIFIPTEGHPHLT 60

Query: 71  ----PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
               P+ +GHE +G++ EVGS V   +VGDRV +EP I CG C  CK G YNLC  + F 
Sbjct: 61  GETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFI 120

Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG 186
           G     G  A  VV PA   +KLPDNV LEE A+ EPL+V  HA RR+   P    +++G
Sbjct: 121 GLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLG 180

Query: 187 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +GPIGL+T+LA +A GA +II+++    R  +A  LGA   
Sbjct: 181 AGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIV 221

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  208 bits (532), Expect = 2e-66
 Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 5/212 (2%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           A    G   L+++   +P  GP +V +++ A GICG+D+H ++      F    P+V GH
Sbjct: 3   ALVYEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE----GEFGAAPPLVPGH 58

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           E AG++  VGS+V   +VGDRVA++P I CG C  C+ G  NLC  +   G    NG  A
Sbjct: 59  EFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVT-RNGGFA 117

Query: 137 HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL 196
             VV PAK  YK+PDN+S EE A+ EPLS  VH      + P  +V++ G+GPIGL+   
Sbjct: 118 EYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQ 177

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETA 228
             +  GA R+ + + + ++L +A+ LGA ET 
Sbjct: 178 LLKLNGASRVTVAEPNEEKLELAKKLGATETV 209

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  200 bits (510), Expect = 4e-63
 Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  G  +V VR+K +GICGSD+H +      N     P ++GHE +G + EVG  V  L+
Sbjct: 20  PVPGAGEVLVRVKRVGICGSDLHIY---HGRNPFASYPRILGHELSGEVVEVGEGVAGLK 76

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
           VGDRV ++P ISCG C  C+ G  N C  ++  G    +G  A  +V PA     +P+ +
Sbjct: 77  VGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHR-DGGFAEYIVVPAD-ALLVPEGL 134

Query: 154 SLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213
           SL++ A+ EPL++G HA RRA V     V+++G+GPIGL  +  A+A GA R+I+ D+D 
Sbjct: 135 SLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDD 193

Query: 214 QRLSIARNLGADETAKVSTD 233
           +RL  AR LGAD+T  V  +
Sbjct: 194 ERLEFARELGADDTINVGDE 213

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  198 bits (505), Expect = 3e-62
 Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           A   +G   ++++    P  GP DV +R+ A GICGSD+H ++      F+    +++GH
Sbjct: 4   AVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGE--PFVPPGDIILGH 61

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS----PPTN 132
           E  G + EVG  V+  +VGDRV +EP I CGHC  C+AG YNLC    F+G        +
Sbjct: 62  EFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGID 120

Query: 133 GSLAHKVVHPAKLCY-KLPDNVSLEEGAMCEPLSVGVHAC-RRANVGPETNVMIMGSGPI 190
           G  A  V  PA     KLPD +  E  A+ EPL+   H    RA V P   V+++G+GPI
Sbjct: 121 GGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPI 180

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 228
           GL+ +  A+  GA  +I+ D   +RL +A+  G  +  
Sbjct: 181 GLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV 218

Length = 350

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  194 bits (496), Expect = 5e-61
 Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 9/216 (4%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           AA L G   ++++   +P  GP +V V+++A GICG+DV   K +R  +  +K P ++GH
Sbjct: 3   AAVLHGPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDV---KKIRGGHTDLKPPRILGH 59

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           E AG I EVG  V   +VGDRV + P + CG C  C  G+ N+CP  + FG+   +G  A
Sbjct: 60  EIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNL-YDGGFA 118

Query: 137 HKVVHPAKLC-----YKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
             V  PA         KLPDNVS EE A+ EPL+  ++A R+A + P   V+++G+GPIG
Sbjct: 119 EYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIG 178

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           L+  + A+A GA ++I++D++  RL  A+ LGAD T
Sbjct: 179 LLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYT 214

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  184 bits (470), Expect = 2e-57
 Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 7/197 (3%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP +V +++ A GICGSD+H +K        V+ P+V+GHE +G I EVG +V+  +
Sbjct: 22  PEPGPGEVLIKVAAAGICGSDLHIYKG---DYDPVETPVVLGHEFSGTIVEVGPDVEGWK 78

Query: 94  VGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           VGDRV  E    +CG C  C+ G YNLCP  +  G+   +G  A  V+ P +  ++LP+N
Sbjct: 79  VGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ-ADGGFAEYVLVPEESLHELPEN 137

Query: 153 VSLEEGAMCEPLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIII-TD 210
           +SLE  A+ EPL+V VHA   R+ + P   V++ G GPIGL+    A+  GA  +++ T+
Sbjct: 138 LSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTE 197

Query: 211 VDVQRLSIARNLGADET 227
            D  RL +A+ LGAD  
Sbjct: 198 KDEVRLDVAKELGADAV 214

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  179 bits (457), Expect = 5e-56
 Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 10/196 (5%)

Query: 40  DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99
           +V VR++A G+CG+D+H  +         K P+++GHE AG++ EVG  V  ++VGDRV 
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPP--PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVV 58

Query: 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA 159
           + P + CG C LC+                  +G  A  VV PA     LPD +SLEE A
Sbjct: 59  VLPNLGCGTCELCRE-----LCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAA 113

Query: 160 M-CEPLSVGVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS 217
           +  EPL+   HA RRA  + P   V+++G+G +GL+    A+A GA R+I+TD   ++L 
Sbjct: 114 LLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLE 172

Query: 218 IARNLGADETAKVSTD 233
           +A+ LGAD       +
Sbjct: 173 LAKELGADHVIDYKEE 188

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score =  170 bits (432), Expect = 3e-51
 Identities = 77/200 (38%), Positives = 113/200 (56%), Gaps = 2/200 (1%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP DV +++K   ICG+DVH +     A   +  PMV+GHE  G + EVGSEV   +
Sbjct: 21  PEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
           VGDRV+ E  I CGHC  C+AG  +LC   +  G     G+ A  +V PA   +K+PD++
Sbjct: 81  VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGV-NRPGAFAEYLVIPAFNVWKIPDDI 139

Query: 154 SLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213
             +  A+ +P    VH     ++  E  V+I G+GPIG++    A+  GA  ++ITDV+ 
Sbjct: 140 PDDLAAIFDPFGNAVHTALSFDLVGED-VLITGAGPIGIMAAAVAKHVGARHVVITDVNE 198

Query: 214 QRLSIARNLGADETAKVSTD 233
            RL +AR +GA     V+ +
Sbjct: 199 YRLELARKMGATRAVNVAKE 218

Length = 341

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  168 bits (429), Expect = 6e-51
 Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 2/192 (1%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP +V +++ A  ICG+DVH ++    A   +K P++ GHE AG + EVG  V  ++
Sbjct: 21  PKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
           VGD V+ E  I CG C  C+ G+Y++C   +  G   T+G  A  VV P +  +K   ++
Sbjct: 81  VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGV-DTDGCFAEYVVVPEENLWKNDKDI 139

Query: 154 SLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213
             E  ++ EPL   VH     +V    +V+I G GPIGL+ +  A+A GA  +I +D + 
Sbjct: 140 PPEIASIQEPLGNAVHTVLAGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNP 198

Query: 214 QRLSIARNLGAD 225
            RL +A+ +GAD
Sbjct: 199 YRLELAKKMGAD 210

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score =  162 bits (411), Expect = 3e-48
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 39  QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRV 98
               V+I   GICGSD+H+++  +  NF++K PMV+GHE  G I    S+   L+ G  V
Sbjct: 28  NGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVH--SDSSGLKEGQTV 85

Query: 99  ALEPGISCGHCSLCKAGSYNLCPEMRFFGS----PPTNGSLAHKVVHPAKLCYKLPDNVS 154
           A+ P   CGHC  C + + N C  MRFFGS    P  +G      V     C   P+   
Sbjct: 86  AINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD 145

Query: 155 LEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 214
            +  A  EPL+V +HA  +A       V + G GPIG + + A +  GA  I+  DV  +
Sbjct: 146 EKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205

Query: 215 RLSIARNLGADETAK-VSTDIEMWGRYK 241
            LS+AR +GAD+     + D++ +   K
Sbjct: 206 SLSLAREMGADKLVNPQNDDLDHYKAEK 233

Length = 343

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score =  155 bits (392), Expect = 1e-45
 Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 2/198 (1%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V +++ A  ICG+DVH +     A   +K P V+GHE AG +  +G  V+ +
Sbjct: 18  VPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGI 77

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           +VGD V++E  I CG C  C+ G Y++C   + FG   T+G  A   V PA+  +K P +
Sbjct: 78  KVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGCFAEYAVVPAQNIWKNPKS 136

Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           +  E   + EPL   VH      +  ++ V++ G+GPIGL+ +  A+A GA  +I++D +
Sbjct: 137 IPPEYATIQEPLGNAVHTVLAGPISGKS-VLVTGAGPIGLMAIAVAKASGAYPVIVSDPN 195

Query: 213 VQRLSIARNLGADETAKV 230
             RL +A+ +GA      
Sbjct: 196 EYRLELAKKMGATYVVNP 213

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  151 bits (383), Expect = 4e-44
 Identities = 75/218 (34%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
            A   G +T++++ + +P  GP +V +R+KA G+CGSD+H++           + ++ GH
Sbjct: 3   GAVFPGDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYY--HGHRAPAYQGVIPGH 60

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           E AG++  VG  V    VGDRV +   + CG C  C+ G   LC   R       +G  A
Sbjct: 61  EPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHA 120

Query: 137 HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV----HACRRANVGPETNVMIMGSGPIGL 192
             ++ P K    LPD++S  +GA+   L  G+    HA RR  V     V+++G+GP+GL
Sbjct: 121 EYMLVPEKTLIPLPDDLSFADGAL---LLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGL 177

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230
             L+ ARA GA  +I  D   +RL +A+ LGAD     
Sbjct: 178 GALMLARALGAEDVIGVDPSPERLELAKALGADFVINS 215

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  148 bits (377), Expect = 3e-43
 Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 21/214 (9%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH----HFKTMRCANFIVKKPMVIGHECA 79
           + L+I+   +P  GP +V ++++A G+C +D+H     +        + K P++ GHE  
Sbjct: 14  QPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP-------VPKLPLIPGHEIV 66

Query: 80  GIIEEVGSEVKSLEVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           G + EVG  V  L+VGDRV +    ISCG C  C++G+ NLCP  +  G   T+G  A  
Sbjct: 67  GTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGY-TTDGGYAEY 125

Query: 139 VVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRANVGPETNVMIMGSGPIGLVT 194
           VV PA+   K+P+ + L E A   PL   G+    A ++ANV P   V ++G+G +G + 
Sbjct: 126 VVVPARYVVKIPEGLDLAEAA---PLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMA 182

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETA 228
           +  A+A GA  +I      ++L +A+ LGAD   
Sbjct: 183 VQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215

Length = 339

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  148 bits (376), Expect = 4e-43
 Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 12/202 (5%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHF---KTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90
           P  GP +V V++KA G+C SD+H               K P+ +GHE AG + EVG+ V 
Sbjct: 22  PEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLT-----KLPLTLGHEIAGTVVEVGAGVT 76

Query: 91  SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
           + +VGDRVA+   I CG C+LC+ G  NLC      G    +G  A  +V PA+    +P
Sbjct: 77  NFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGL-GIDGGFAEYIVVPARALVPVP 135

Query: 151 DNVSLEEGA-MCEPLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIII 208
           D V   + A   + +    HA  R   V P   V+++G G +GL  +  A+A GA  +I 
Sbjct: 136 DGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIA 194

Query: 209 TDVDVQRLSIARNLGADETAKV 230
            D+  ++L +A+ LGADE    
Sbjct: 195 VDIKEEKLELAKELGADEVLNS 216

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score =  147 bits (372), Expect = 1e-42
 Identities = 68/204 (33%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 25  TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE 84
           +L I+   +P     +V+V++K  GICGSD H +   R  N   K P VIGHE  G+I+ 
Sbjct: 11  SLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIY---RGHNPFAKYPRVIGHEFFGVIDA 67

Query: 85  VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK 144
           VG  V +  +G+RVA++P ISCGHC  C  G  N+C  +   G    +G  +   V PAK
Sbjct: 68  VGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGV-HRDGGFSEYAVVPAK 126

Query: 145 LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA-ARAFGA 203
             +++PD ++ +   M EP ++  +   R     +   +I G+GP+GL  +      +  
Sbjct: 127 NAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNV 186

Query: 204 PRIIITDVDVQRLSIARNLGADET 227
             +I+ D   +RL++A+  GAD  
Sbjct: 187 KAVIVADRIDERLALAKESGADWV 210

Length = 339

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  147 bits (373), Expect = 2e-42
 Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 12/198 (6%)

Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
           GP D  VR+ A  ICGSD+H     R      K  M++GHE  G + EVGS+VK L+ GD
Sbjct: 24  GPHDAIVRVTATSICGSDLH---IYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGD 80

Query: 97  RVALEPGISCGHCSLCKAGSYNLC----PEMRFFGSPPTNGSLAHKVVHPA--KLCYKLP 150
           RV++     CG C  C+ G +  C       +       +G  A  V  P       K+P
Sbjct: 81  RVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRI--DGGQAEYVRVPYADMNLAKIP 138

Query: 151 DNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209
           D +  E+  M  + L  G H    A + P + V ++G+GP+GL  +  AR  GA RII  
Sbjct: 139 DGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAV 198

Query: 210 DVDVQRLSIARNLGADET 227
           D + +RL +A+  GA + 
Sbjct: 199 DSNPERLDLAKEAGATDI 216

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  145 bits (368), Expect = 1e-41
 Identities = 78/218 (35%), Positives = 108/218 (49%), Gaps = 20/218 (9%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           L+I+   LP L P  V VR++  G+CGSDVH     R     V  P+++GHE  G +  +
Sbjct: 13  LEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRP---RVPLPIILGHEGVGRVVAL 69

Query: 86  GSEVKS------LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS------PPTNG 133
           G  V +      L+VGDRV    G  CG C  C  G    C   + +G       P  +G
Sbjct: 70  GGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSG 129

Query: 134 SLA-HKVVHPAKLCYKLPDNVSLE--EGAMCEPLSVGVHACRRAN-VGPETNVMIMGSGP 189
             A H  + P     ++PDNV  E    A C  L+  + A  RA  VG    V++ G+GP
Sbjct: 130 GYAEHIYLPPGTAIVRVPDNVPDEVAAPANC-ALATVLAALDRAGPVGAGDTVVVQGAGP 188

Query: 190 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +GL  + AA+  GA R+I+ D   +RL +AR  GAD T
Sbjct: 189 LGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT 226

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  145 bits (367), Expect = 1e-41
 Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 11/226 (4%)

Query: 17  AAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG 75
           AA L    K L+++   +P  GP  V VR+   G+C SD+H    +       K P  +G
Sbjct: 3   AARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLG 62

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HE AG +EEVGS V  L+ GD V + P   CG C  C+ G  N C   RF G   T+G  
Sbjct: 63  HENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGI-GTDGGF 121

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRAN--VGPETNVMIMGSGP 189
           A  ++ P++   KLP  +   E A   PL+  G+   HA ++A   + P + V+++G G 
Sbjct: 122 AEYLLVPSRRLVKLPRGLDPVEAA---PLADAGLTAYHAVKKALPYLDPGSTVVVIGVGG 178

Query: 190 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           +G + +   RA     +I  D   + L +A  LGAD     S D+ 
Sbjct: 179 LGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVV 224

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  135 bits (341), Expect = 1e-40
 Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 4/112 (3%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
           P +V VR+KA GICGSD+H ++        VK P+++GHE AGI+EEVG  V  L+VGDR
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRG---EPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDR 57

Query: 98  VALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL 149
           V + P I CG C+ C+ G  NLCP  +F G    +G  A  VV PA+    L
Sbjct: 58  VVVYPLIPCGKCAACREGRENLCPNGKFLGV-HLDGGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  141 bits (357), Expect = 7e-40
 Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 29/214 (13%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFI--VKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P D  VR+ A  ICGSD+H         +I  +KK  ++GHE  G++EEVG EV++L+VG
Sbjct: 25  PTDAIVRVTATAICGSDLH-----LYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79

Query: 96  DRVALEPGISCGHCSLCKAGSYNLC------PEMR---------FFGSPPTNGSLAH--- 137
           DRV +   I+CG C  CK G Y+ C       EM           FG     G  A    
Sbjct: 80  DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQA 139

Query: 138 ---KVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
              +V       +K+PD++S E+   + + L  G HA   A V P   V + G GP+GL 
Sbjct: 140 EYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLF 199

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              +A+  GA R+I  D   +RL +AR+    ET
Sbjct: 200 AARSAKLLGAERVIAIDRVPERLEMARSHLGAET 233

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  139 bits (354), Expect = 9e-40
 Identities = 73/244 (29%), Positives = 105/244 (43%), Gaps = 49/244 (20%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
             L+   +    LGP DV ++I   G+C SD+H   T+R      K P+V GHE  GI+ 
Sbjct: 10  GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLH---TLRNEWGPTKYPLVPGHEIVGIVV 66

Query: 84  EVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSP------PTN 132
            VGS+V   +VGDRV    G+     SCG C  CK+G    CP+     +        T 
Sbjct: 67  AVGSKVTKFKVGDRV----GVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQ 122

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHACRRANVGPETNVMI 184
           G  A  +V   +  +K+P+ +     A  +C       PL       +R  VGP   V +
Sbjct: 123 GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPL-------KRNGVGPGKRVGV 175

Query: 185 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-------ARNLGADETAKVSTDIEMW 237
           +G G +G + +  A+A GA        +V   S        A  LGADE    + D E  
Sbjct: 176 VGIGGLGHLAVKFAKALGA--------EVTAFSRSPSKKEDALKLGADEFI-ATKDPEAM 226

Query: 238 GRYK 241
            +  
Sbjct: 227 KKAA 230

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score =  136 bits (344), Expect = 3e-38
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 22/226 (9%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI---------VKKPMVIGHECAGIIEE 84
           P  GP ++ V+++A GIC  D+   K    A            VK PM+ GHE  G + E
Sbjct: 20  PRPGPGEILVKVEACGICAGDI---KCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE 76

Query: 85  VGSEVKS--LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG-SPPTNGSLAHKVVH 141
           +G   +   ++VGDRV  E  + C +C  C  G Y +C +   +G     NG +A  +  
Sbjct: 77  LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRF 136

Query: 142 PAK-LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA 200
           P + + +K+PD++  E+  + EPL+  +HA  RAN+  +  V++ G+GP+GL  + AAR 
Sbjct: 137 PKEAIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARL 196

Query: 201 FGAPRIIITDVDVQRLSIARNLGADETAKVSTD------IEMWGRY 240
               ++I+ D+  +RL++AR  GAD               E+ G Y
Sbjct: 197 KNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGY 242

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score =  136 bits (343), Expect = 7e-38
 Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 14/213 (6%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI----VKKPMVIGHECAGI 81
           L+++   +P L P ++ +R+KA GICGSD+H ++T +    +     + P+VIGHE +G+
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +E+ G  VK+ E GD V  E  + CG C  C++GS N C  ++  G    +G+ A  +  
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGF-SADGAFAEYIAV 157

Query: 142 PAKLCYKLPDNV-------SLEEGAMCEPLSVGVHAC--RRANVGPETNVMIMGSGPIGL 192
            A+  +++ +         + E GA+ EP SV  +    R     P   V++ G+GPIGL
Sbjct: 158 NARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGL 217

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
             +  A+A GA ++I  ++  +R ++A+ +GAD
Sbjct: 218 AAIALAKAAGASKVIAFEISEERRNLAKEMGAD 250

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score =  135 bits (341), Expect = 7e-38
 Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 8/197 (4%)

Query: 33  LPTL-GPQDVKVRIKALGICGSDVHH-FKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90
           +P +    DV V++ + G+CGSD+   FK    A++    P+ +GHE +G +E VGS V 
Sbjct: 19  IPEIKHQDDVLVKVASSGLCGSDIPRIFK--NGAHYY---PITLGHEFSGYVEAVGSGVD 73

Query: 91  SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
            L  GD VA  P + C  C  C  G Y+LC +  F GS    G+  + VV    L + LP
Sbjct: 74  DLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNL-FALP 132

Query: 151 DNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210
            ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +  A A GA  +   D
Sbjct: 133 TDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192

Query: 211 VDVQRLSIARNLGADET 227
           ++ ++L++A++LGA +T
Sbjct: 193 INSEKLALAKSLGAMQT 209

Length = 347

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  133 bits (337), Expect = 3e-37
 Identities = 72/198 (36%), Positives = 101/198 (51%), Gaps = 11/198 (5%)

Query: 34  PTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           P +  P D  V++ A  ICGSD+H ++     +       V+GHE  G + EVG EV++L
Sbjct: 20  PQIQDPTDAIVKVTAAAICGSDLHIYR----GHIPSTPGFVLGHEFVGEVVEVGPEVRTL 75

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGSLAHKVVHPA--KLCY 147
           +VGDRV     I+CG C  C+ G    C +   F   GSP  +G+ A  V  P       
Sbjct: 76  KVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLL 135

Query: 148 KLPDNVSLEEG-AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRI 206
           KLPD +S E    + + L  G    +RA V P   V ++G GP+GL  +L+A+  GA R+
Sbjct: 136 KLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARV 195

Query: 207 IITDVDVQRLSIARNLGA 224
              D   +RL  A  LGA
Sbjct: 196 FAVDPVPERLERAAALGA 213

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  133 bits (338), Expect = 3e-37
 Identities = 75/234 (32%), Positives = 101/234 (43%), Gaps = 31/234 (13%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K L+I+   L   GP +V VRI A G+C SD+H        +     P V+GHE AG++E
Sbjct: 11  KPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT----GDLPAPLPAVLGHEGAGVVE 66

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE------MRFFGSPP------- 130
           EVG  V  ++ GD V L    +CG C  C  G  NLC         +             
Sbjct: 67  EVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGE 126

Query: 131 ------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV-----HACRRANVGPE 179
                   G+ A   V P     K+ D++ L+  A+   L  GV          A V P 
Sbjct: 127 PVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAAL---LGCGVTTGVGAVVNTARVRPG 183

Query: 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             V ++G G +GL  +  AR  GA RII  D   ++L +AR  GA  T   S D
Sbjct: 184 DTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASED 237

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  133 bits (337), Expect = 3e-37
 Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH---------HFKTMRCANFIVKKPMVI 74
           K L+      P     +V V++ A G+C SD+H           KTM   +  VK P+V+
Sbjct: 11  KPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVL 70

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
           GHE  G +  VG +   ++VGD+V + P I CG C +C AG  NLC + R  G    +G 
Sbjct: 71  GHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQ-DGG 129

Query: 135 LAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVG-PETNVMIMGSGPIG 191
            A  V+ P       P  +     A   C  L+    A ++      +  V+I+G+G +G
Sbjct: 130 YAEYVIVPHSRYLVDPGGLDPALAATLACSGLTA-YSAVKKLMPLVADEPVVIIGAGGLG 188

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           L+ L   +A G   II+ D+D  +L  A+  GAD  
Sbjct: 189 LMALALLKALGPANIIVVDIDEAKLEAAKAAGADVV 224

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score =  132 bits (333), Expect = 8e-37
 Identities = 67/201 (33%), Positives = 99/201 (49%), Gaps = 20/201 (9%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--------VIGHECAGIIEEV 85
           P  GP  V V++ A GICGSD+H              P         V+GHE  G + + 
Sbjct: 19  PEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78

Query: 86  GSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK 144
           G   +  L+VG RV   P + CG  + C  G            SP   G  A  ++    
Sbjct: 79  GPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-----------SPEAPGGYAEYMLLSEA 127

Query: 145 LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP 204
           L  ++PD +S+E+ A+ EPL+VG+HA RRA + P    +++G GPIGL  + A +A G  
Sbjct: 128 LLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVG 187

Query: 205 RIIITDVDVQRLSIARNLGAD 225
            I+ +D   +R ++A  +GAD
Sbjct: 188 PIVASDFSPERRALALAMGAD 208

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  129 bits (327), Expect = 6e-36
 Identities = 76/207 (36%), Positives = 107/207 (51%), Gaps = 13/207 (6%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI--VKKPMVIGHECAGI 81
           K L+I+    P  GP +V +++KA G+C  D+  +K      F    K P+++GHE  G 
Sbjct: 11  KPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWK-----GFFPRGKYPLILGHEIVGT 65

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +EEVG  V+  + GDRV L   I CG C  C +G  NLC     +G    +G  A  V  
Sbjct: 66  VEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGE-EVDGGFAEYVKV 124

Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAA 198
           P +   KLPDNVS E  A   C  +   VHA +RA V     V++ G  G +G+  +  A
Sbjct: 125 PERSLVKLPDNVSDESAALAAC-VVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLA 183

Query: 199 RAFGAPRIIITDVDVQRLSIARNLGAD 225
           +A GA  I +T    ++L I + LGAD
Sbjct: 184 KALGARVIAVTRSP-EKLKILKELGAD 209

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  129 bits (326), Expect = 1e-35
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G + L+      P  GP +V VR+KA  +   D+   + M      +  P ++G + AG+
Sbjct: 11  GPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIK--LPLPHILGSDGAGV 68

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +E VG  V +++ G RV + PGISCG C  C AG  NLC +    G    +G  A  V  
Sbjct: 69  VEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-HVDGGYAEYVAV 127

Query: 142 PAKLCYKLPDNVSLEEGAMCEPLSVGV--HACR-RANVGPETNVMIMG-SGPIGLVTLLA 197
           PA+    +PDN+S EE A   PL+     H    RA + P   V++ G    +G   +  
Sbjct: 128 PARNLLPIPDNLSFEEAA-AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQI 186

Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADET 227
           A+ FGA  +I T     +L  A+ LGAD  
Sbjct: 187 AKLFGA-TVIATAGSEDKLERAKELGADYV 215

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  127 bits (322), Expect = 4e-35
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 14/219 (6%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           A  +LGI  +      +P  GP D  VR  A+  C SDVH   T+       +  M++GH
Sbjct: 3   AFAMLGIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVH---TVWGGAPGERHGMILGH 59

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM----RFFGSPPTN 132
           E  G++EEVGSEVK  + GDRV +            + G  +    M    +F  S   +
Sbjct: 60  EAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF--SNFKD 117

Query: 133 GSLAHKVVHP---AKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSG 188
           G  A         A L   LPD ++ E+  M  + +S G H    AN+     V + G G
Sbjct: 118 GVFAEYFHVNDADANL-APLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIG 176

Query: 189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           P+GL+ +  AR  GA RII       R+ +A+  GA + 
Sbjct: 177 PVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDI 215

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  126 bits (319), Expect = 8e-35
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 17/211 (8%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
             L+ +   +P  GP +V ++I+A G+C +D+H            K P+V GHE  G + 
Sbjct: 10  GPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLH---AAEGDWGGSKYPLVPGHEIVGEVV 66

Query: 84  EVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           EVG+ V+  +VGDRV    G+     SCG C  C+ G  NLC +    G   T G  A  
Sbjct: 67  EVGAGVEGRKVGDRV----GVGWLVGSCGRCEYCRRGLENLCQKAVNTGY-TTQGGYAEY 121

Query: 139 VVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL 196
           +V  A+    LPD + L + A  +C  ++V   A R A   P   V ++G G +G + + 
Sbjct: 122 MVADAEYTVLLPDGLPLAQAAPLLCAGITV-YSALRDAGPRPGERVAVLGIGGLGHLAVQ 180

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADET 227
            ARA G   + IT     +  +AR LGADE 
Sbjct: 181 YARAMGFETVAIT-RSPDKRELARKLGADEV 210

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score =  123 bits (310), Expect = 4e-33
 Identities = 70/202 (34%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
           P D  VRI    ICGSD+H    M       +  +V+GHE  G +EEVGS V+SL+VGDR
Sbjct: 25  PTDAIVRITTTAICGSDLH----MYRGRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGDR 80

Query: 98  VALEPGISCGHCSLCKAGSYNLCPEM---------RFFGSPPTNGSLAHKVVHP-AKL-C 146
           V +   ++CG C  CK G   +C  +          +    P  G  A  +  P A    
Sbjct: 81  VVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNL 140

Query: 147 YKLPDNVSLEEGAMCEPLS----VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG 202
            KLPD    +E      LS     G H    A V P   V + G+GP+GL+   +A   G
Sbjct: 141 LKLPDRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRG 200

Query: 203 APRIIITDVDVQRLSIARNLGA 224
           A R+ + D   +RL +A ++GA
Sbjct: 201 ASRVYVVDHVPERLDLAESIGA 222

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  121 bits (305), Expect = 1e-32
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 8/217 (3%)

Query: 22  GIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAG 80
           G   +  +    PT+  P D  V++    ICG+D+H    ++     V    ++GHE  G
Sbjct: 8   GPGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLH---ILKGDVPTVTPGRILGHEGVG 64

Query: 81  IIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH--K 138
           ++EEVGS V + +VGDRV +    SCG C  C+ G Y+ C    +      +G+ A   +
Sbjct: 65  VVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVR 124

Query: 139 VVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC--RRANVGPETNVMIMGSGPIGLVTLL 196
           + H     YKLP+ V  E   M   +    + C      V P   V I+G+GP+GL  LL
Sbjct: 125 IPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALL 184

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
            A+ +   +II+ D+D  RL +A+ LGA  T   +  
Sbjct: 185 TAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKG 221

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  121 bits (305), Expect = 1e-32
 Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 25/233 (10%)

Query: 17  AAWLL--GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
           AA +   G K  +++   +P  GP +V V+++A G+C +D  H           K P++ 
Sbjct: 3   AAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTD-LHAALGD-WPVKPKLPLIG 60

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSP 129
           GHE AG++  VG  V  L+VGDRV    G+     +CG C  C+ G   LCP  +  G  
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRV----GVKWLYDACGKCEYCRTGDETLCPNQKNSGY- 115

Query: 130 PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGS 187
             +G+ A   +  A+    +PD +S E+ A  +C  ++V   A ++A + P   V+I G+
Sbjct: 116 TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTV-YKALKKAGLKPGDWVVISGA 174

Query: 188 GPIGLVTLLA---ARAFGAPRIIITDVDVQRLSIARNLGADET--AKVSTDIE 235
           G  G +  L    A+A G  R+I  DV  ++L +A+ LGAD     K S D+E
Sbjct: 175 G--GGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKKSDDVE 224

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  121 bits (306), Expect = 1e-32
 Identities = 70/230 (30%), Positives = 100/230 (43%), Gaps = 37/230 (16%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
             ++   L    P +V VRI A GIC +D+     +R        P V+GHE AG++E V
Sbjct: 15  FVLEDVELDDPRPDEVLVRIVATGICHTDLV----VRDGGLPTPLPAVLGHEGAGVVEAV 70

Query: 86  GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM--------RFFGSPP--TNG-- 133
           GS V  L+ GD V L    SCG C+ C +G    C           R  GS P   +   
Sbjct: 71  GSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGT 129

Query: 134 ----------SLA-HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA-----CRRANVG 177
                     S A + VVH  +   K+  +V LE  A   PL  G+              
Sbjct: 130 PVHGHFFGQSSFATYAVVH-ERNVVKVDKDVPLELLA---PLGCGIQTGAGAVLNVLKPR 185

Query: 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           P +++ + G+G +GL  ++AA+  G   II  D+   RL +A+ LGA   
Sbjct: 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHV 235

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  120 bits (304), Expect = 2e-32
 Identities = 76/218 (34%), Positives = 105/218 (48%), Gaps = 29/218 (13%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L+I+    P   P  V V ++A G+C SD H +   +  +  V  P V GHE AG++ 
Sbjct: 11  EPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGW---QGHDPDVTLPHVPGHEFAGVVV 67

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--FGSPPTNGSLAHKV-V 140
           EVG +V    VGDRV +   + CG C  C+AG  N+C       F  P   GS A  V V
Sbjct: 68  EVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHP---GSFAEYVAV 124

Query: 141 HPAKL-CYKLPDNVSLEEGAMCEPLSVGVHACR----------RANVGPETNVMIMGSGP 189
             A +   +LPD+V     A      +G   CR          +A V P   V + G G 
Sbjct: 125 PRADVNLVRLPDDVDFVTAA-----GLG---CRFATAFRALVHQARVKPGEWVAVHGCGG 176

Query: 190 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +GL  ++ A A GA R+I  D+D  +L +AR LGA  T
Sbjct: 177 VGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVAT 213

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  120 bits (303), Expect = 2e-32
 Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
           P D  +R+ A  +CGSD+  ++ +         P  IGHE  G++EEVGSEV S++ GD 
Sbjct: 25  PTDAVIRVVATCVCGSDLWPYRGVSPTRA----PAPIGHEFVGVVEEVGSEVTSVKPGDF 80

Query: 98  VALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG-SLAHKVVHPAKLCYKLPDNVSLE 156
           V     IS G C  C+AG    C    F+G+    G     +V        K+P + S +
Sbjct: 81  VIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDD 140

Query: 157 EG------AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210
           E       A+ + +  G HA   A V P + V+++G G +GL  +LAA+  GA RII   
Sbjct: 141 EDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMS 200

Query: 211 VDVQRLSIARNLGADETAKVSTDI 234
               R ++AR  GA       TDI
Sbjct: 201 RHEDRQALAREFGA-------TDI 217

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  117 bits (295), Expect = 5e-31
 Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K L+I+   L      +V VRI A G+C +D H         F    P V+GHE AGI+E
Sbjct: 13  KPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEGF----PAVLGHEGAGIVE 68

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR---FFGSPP--------TN 132
            VG  V S++ GD V L     CG C  C +G  NLC  +R     G+ P          
Sbjct: 69  AVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNG 128

Query: 133 GSLAH---------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV-----HACRRANVGP 178
             + H           V       K+  +  LE+      L  GV          A V P
Sbjct: 129 VPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKAC---LLGCGVTTGIGAVVNTAKVEP 185

Query: 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              V + G G +GL  +  A+A GA RII  D++ ++L +A+  GA   
Sbjct: 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF 234

Length = 366

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  114 bits (287), Expect = 3e-30
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 25/221 (11%)

Query: 16  MAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           M A +    GI+ LK++    P  GP +V +R+K  G+   D          N +  KPM
Sbjct: 1   MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVD------YNVINAVKVKPM 54

Query: 73  --VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
             + G E AG++EEVG  VK ++ GDRV +   +  G C +C +G+  LC      G   
Sbjct: 55  PHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGV-V 113

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV----HACRRANVGPETNVMIMG 186
           +NG  A  +V P K  +K+PD++S E  A    L V      HA + A +GP   V++ G
Sbjct: 114 SNGGYAEYIVVPEKNLFKIPDSISDELAA---SLPVAALTAYHALKTAGLGPGETVVVFG 170

Query: 187 -SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
            SG  G+  +  A+  GA  I ++     R    +  GADE
Sbjct: 171 ASGNTGIFAVQLAKMMGAEVIAVS-----RKDWLKEFGADE 206

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  112 bits (281), Expect = 5e-29
 Identities = 71/229 (31%), Positives = 100/229 (43%), Gaps = 32/229 (13%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           L I+   +P     ++ +R+ A G+C SD+H  K           P V+GHE +G + EV
Sbjct: 13  LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLK----GELPFPPPFVLGHEISGEVVEV 68

Query: 86  GSEVKS---LEVGDRVALEPGISCGHCSLCKAGSYNLCP---------------EMRFFG 127
           G  V++   L VGDRV     + CG C  C  G  NLC                  R F 
Sbjct: 69  GPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFR 128

Query: 128 SPPT------NGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRAN-VGP 178
                      G LA   V PA     LP+++   E A+  C   +    A + A  V P
Sbjct: 129 LDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFT-AYGALKHAADVRP 187

Query: 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              V ++G G +G   +  A+AFGA  II  DV  ++L+ A+ LGA  T
Sbjct: 188 GETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT 236

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  110 bits (276), Expect = 1e-28
 Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 31/209 (14%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G + LK+     P  GP +V VR+KA G+   DV   + +  A  +   P + G E AG+
Sbjct: 11  GPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGL--APPVRPLPFIPGSEAAGV 68

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +  VGS V   +VGDRVA                           G    +G  A  VV 
Sbjct: 69  VVAVGSGVTGFKVGDRVA-------------------------ALGGVGRDGGYAEYVVV 103

Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAA 198
           PA     LPD +S EE A      L+  +    RA + P   V++ G +G +G   +  A
Sbjct: 104 PADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLA 163

Query: 199 RAFGAPRIIITDVDVQRLSIARNLGADET 227
           +A GA  + +     ++L + + LGAD  
Sbjct: 164 KALGATVVAVVSSS-EKLELLKELGADHV 191

Length = 326

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  109 bits (276), Expect = 2e-28
 Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 31/229 (13%)

Query: 16  MAAWLL-GIKTLKIQPYHL-----PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIV- 68
           M A +L     ++  P  L     P  GP +V ++++A G+C +D+H          IV 
Sbjct: 1   MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLH----------IVE 50

Query: 69  ------KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP 121
                 K P++ GHE  G +E VG  V    VGDRV +   G +CG C  C++G  NLC 
Sbjct: 51  GDLPPPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCD 110

Query: 122 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPE 179
             RF G    +G  A  +V   +  Y +P++   EE A  +C  + +G  A + A + P 
Sbjct: 111 NARFTGY-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGI-IGYRALKLAGLKPG 168

Query: 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADET 227
             + + G G    + L  AR  GA     T   + Q L  AR LGAD  
Sbjct: 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQEL--ARELGADWA 215

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  109 bits (274), Expect = 4e-28
 Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 41/234 (17%)

Query: 21  LGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAG 80
           L I+ +++ P   P     +V++++ A G+C +D+H              P+++GHE AG
Sbjct: 13  LSIEEIEVAP---P--KAGEVRIKVVATGVCHTDLHVIDGKLPTPL----PVILGHEGAG 63

Query: 81  IIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR---------------- 124
           I+E +G  V +L+ GD+V    G  CG C  C     NLC + R                
Sbjct: 64  IVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFT 123

Query: 125 --------FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHAC-RR 173
                   F G+     + A   V       K+  +  LE+  +  C   S G  A    
Sbjct: 124 CKGKPIHHFLGT----STFAEYTVVSEISLAKIDPDAPLEKVCLIGCG-FSTGYGAAVNT 178

Query: 174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           A V P +   + G G +GL  ++  +A GA RII  D++  +   A+ LGA E 
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATEC 232

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  108 bits (272), Expect = 4e-28
 Identities = 61/195 (31%), Positives = 82/195 (42%), Gaps = 30/195 (15%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
            PT GP  V VR++  G+CGSD+  F   R       +P   GHE  G +  +G  V+ L
Sbjct: 14  RPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGL 73

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
            VGDRVA   G                             G+ A   +  A     LP  
Sbjct: 74  AVGDRVAGLSG-----------------------------GAFAEYDLADADHAVPLPSL 104

Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
               +    EPL   ++  RR  +     V ++G+G IGL+ L  A A GA R+I  D  
Sbjct: 105 -LDGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRR 163

Query: 213 VQRLSIARNLGADET 227
             RL++AR LGA E 
Sbjct: 164 PARLALARELGATEV 178

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  109 bits (274), Expect = 5e-28
 Identities = 77/227 (33%), Positives = 106/227 (46%), Gaps = 28/227 (12%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L I+   L   GP +V V+I A G+C SD+      R        PM +GHE AG++ 
Sbjct: 19  RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR----PLPMALGHEAAGVVV 74

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP----------------EMRFFG 127
           EVG  V  LEVGD V L    SCGHC  C  G   LC                  +R  G
Sbjct: 75  EVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRG 134

Query: 128 SPPTN----GSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHAC-RRANVGPET 180
               +     + A   V   +   K+  +V LE  A+  C  L+ GV A    A V P  
Sbjct: 135 GEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLT-GVGAVVNTAGVRPGQ 193

Query: 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +V ++G G +GL  LL A A GA +++  D++  +L++AR LGA  T
Sbjct: 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATAT 240

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  108 bits (272), Expect = 5e-28
 Identities = 64/227 (28%), Positives = 99/227 (43%), Gaps = 13/227 (5%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFK-TMRCANFIVKKPMVIG 75
           A  L G   L+++    P   P +  VR+   GIC +D+  +K            P V G
Sbjct: 3   ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-------FPGVPG 55

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HE  GI+EE       L VG RV  E  I+CG C  C+ G Y  CP     G    +G+ 
Sbjct: 56  HEFVGIVEEGPEA--EL-VGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAF 112

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTL 195
           A  +  P +  + +PD V  E+    EPL+  +    +  + P   V ++G G +GL+  
Sbjct: 113 AEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIA 172

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM 242
                 G P +++     ++L++AR LG  ET          G + +
Sbjct: 173 QVLALTG-PDVVLVGRHSEKLALARRLGV-ETVLPDEAESEGGGFDV 217

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  102 bits (257), Expect = 8e-26
 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 9/197 (4%)

Query: 17  AAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG 75
           A  L G K   +I+    P  G  +V +++   G+C  D      ++     +K P+++G
Sbjct: 3   AVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRD---LLQLQGFYPRMKYPVILG 59

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HE  G +EEVG  VK  + GDRVA       G C  C++G    C     +G    +G  
Sbjct: 60  HEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGE-ELDGFF 118

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEP--LSVGVHACRRANVGPETNVMIMG-SGPIGL 192
           A           K+P NVS +EGA+  P    +     RRA V     V++ G  G +G+
Sbjct: 119 AEYAKVKVTSLVKVPPNVS-DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGI 177

Query: 193 VTLLAARAFGAPRIIIT 209
             +  A+A GA  I +T
Sbjct: 178 HAIQVAKALGAKVIAVT 194

Length = 334

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 35/216 (16%)

Query: 38  PQDVKVRIKAL--GICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK L   +C +D+   +  +   F    P+++GHE AGI+E VG  V +L+ G
Sbjct: 25  PKANEVRIKMLATSVCHTDILAIEGFKATLF----PVILGHEGAGIVESVGEGVTNLKPG 80

Query: 96  DRVALEPGIS-CGHCSLCKAGSYNLCPEMRFFGS---PP----------------TNGSL 135
           D+V +   I  CG CS C++G  NLC + R   S   P                    + 
Sbjct: 81  DKV-IPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTF 139

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVMIMGSGPI 190
           +   V       K+     LE   +   L  G       A   A V P + V + G G +
Sbjct: 140 SQYTVVDENYVAKIDPAAPLEHVCL---LGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAV 196

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           GL  ++ A+  GA RII  D++  +   A+  GA +
Sbjct: 197 GLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD 232

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 26/145 (17%)

Query: 17  AAWLLGIKT--LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
           AA L G     L +    +P  GP +V V++KA+ +   D  H        FI   P ++
Sbjct: 3   AAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQD----YGFIPSYPAIL 58

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
           G + AG + EVGS V   +VGDRV        G                    + P NG+
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV-------AGFV-------------HGGNPNDPRNGA 98

Query: 135 LAHKVVHPAKLCYKLPDNVSLEEGA 159
               VV  A L  K+PDN+S EE A
Sbjct: 99  FQEYVVADADLTAKIPDNISFEEAA 123

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 89.6 bits (223), Expect = 3e-21
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 31/180 (17%)

Query: 60  TMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNL 119
            +      +  P+  G+   G + EVGS V   + GDRV                     
Sbjct: 10  GLSTGTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVF-------------------- 49

Query: 120 CPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPE 179
                        G  A +VV PA L   LPD +  E  A+    +  ++  R A     
Sbjct: 50  -----------CFGPHAERVVVPANLLVPLPDGLPPERAALTALAATALNGVRDAEPRLG 98

Query: 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR 239
             V ++G G +GL+    A+A GA  ++  D D  R  +A  LG  +     T  E+ GR
Sbjct: 99  ERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGR 158

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 89.9 bits (223), Expect = 6e-21
 Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V V I+A G+C +D+H+ +      F    P ++GHE AG++E VG  V  +
Sbjct: 21  VPDPGPGEVIVDIQACGVCHTDLHYREGGINDEF----PFLLGHEAAGVVEAVGEGVTDV 76

Query: 93  EVGDRVALEPGISCGHCSLCKAG-------SYNLCPEMRFF-GSPPTN----GSLAHKVV 140
             GD V L     CG C  CK G       ++N   +M    G+  +     G+ A K +
Sbjct: 77  APGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTL 136

Query: 141 HPAKLCYKL-PDNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVMIMGSGPIGLVT 194
             A  C K+ P      + A    L  GV      A     V    +V ++G G +G   
Sbjct: 137 VHAGQCTKVDPA----ADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAA 192

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +  A   GA +II  D+D ++L  AR  GA  T   S  
Sbjct: 193 IAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGT 231

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 37/216 (17%)

Query: 40  DVKVRIKALGICGSDVHHFKT--MRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
           +V V++ A G+C SD  H  T  +    +    P++ GHE AG++ +VG  V  ++ GD 
Sbjct: 28  EVLVKLVASGLCHSD-EHLVTGDLPMPRY----PILGGHEGAGVVTKVGPGVTGVKPGDH 82

Query: 98  VALEPGISCGHCSLCKAGSYNLCPE--MRFFGSPPTNGSLAHK----------------- 138
           V L    +CG C  C  G  NLC        GS  ++G+                     
Sbjct: 83  VVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHADGQDVGQMCLLGTFSE 142

Query: 139 --VVHPAKLCYKLPDNVSLEEGAMCEPLSVGV-----HACRRANVGPETNVMIMGSGPIG 191
             VV  A    K+ D++ L++  +   +  GV      A   A+V P   V++MG G +G
Sbjct: 143 YTVVPEAS-VVKIDDDIPLDKACL---VGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVG 198

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +  +  A   GA ++I  D    +   A   GA   
Sbjct: 199 INAVQGAAVAGARKVIAVDPVEFKREQALKFGATHA 234

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 86.8 bits (215), Expect = 8e-20
 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 16/217 (7%)

Query: 31  YHLPTLGPQDVKVRIKALGICGSDVHHFKT-MRCANFIVKKPMVIGHECAGIIEEVGSEV 89
           Y L   GP+DV +++   GIC +D+H  K  +  +N+    PMV GHE  G + EVGS+V
Sbjct: 27  YTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNY----PMVPGHEVVGEVVEVGSDV 82

Query: 90  KSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFG-------SPPTNGSLAHKVVH 141
               VGD V +   +  CG CS CK+     C + R +          PT G  A  +V 
Sbjct: 83  SKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNK-RIWSYNDVYTDGKPTQGGFASAMVV 141

Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR 199
             K   K+P+ ++ E+ A  +C  ++V                 I+G G +G + +  A+
Sbjct: 142 DQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAK 201

Query: 200 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM 236
           A G    +I+  D +R     +LGAD+    S   EM
Sbjct: 202 AMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEM 238

Length = 357

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 84.1 bits (209), Expect = 4e-19
 Identities = 62/225 (27%), Positives = 93/225 (41%), Gaps = 48/225 (21%)

Query: 16  MAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           M A  +    G + L++     P  GP +V V++ A G+   D+   + +  A F +  P
Sbjct: 1   MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLP 60

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           ++ GH+ AG++  VG  V   +VGD V                           FG  P 
Sbjct: 61  LIPGHDVAGVVVAVGPGVTGFKVGDEV---------------------------FGMTPF 93

Query: 132 --NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV-----GVHACRRANVGPETNVMI 184
              G+ A  VV PA      P N+S EE A   PL+       +       +     V+I
Sbjct: 94  TRGGAYAEYVVVPADELALKPANLSFEEAAAL-PLAGLTAWQALF--ELGGLKAGQTVLI 150

Query: 185 MG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADE 226
            G +G +G   +  A+A GA R+I T    +   L   R+LGADE
Sbjct: 151 HGAAGGVGSFAVQLAKARGA-RVIATASAANADFL---RSLGADE 191

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 84.7 bits (210), Expect = 4e-19
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 32/215 (14%)

Query: 38  PQDVKVRIK--ALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK  A GIC SD H          +   P+++GHE AGI+E VG  V +++ G
Sbjct: 30  PKAHEVRIKIVATGICRSDDHVVSG----KLVTPFPVILGHEAAGIVESVGEGVTTVKPG 85

Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT----------NGSLAHK------- 138
           D+V       CG C  C     NLC +                    G   H        
Sbjct: 86  DKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTF 145

Query: 139 ----VVHPAKLCYKLPDNVSLEEGAM--CEPLSVGV-HACRRANVGPETNVMIMGSGPIG 191
               VV    +  K+     LE+  +  C   S G   A   A V P +   + G G +G
Sbjct: 146 SEYTVVDEIAVA-KIDAAAPLEKVCLIGCG-FSTGYGAAVNTAKVTPGSTCAVFGLGGVG 203

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           L  ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 204 LSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 84.9 bits (210), Expect = 4e-19
 Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 32/238 (13%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQ--DVKVRIKALGICGSDVHHFKTMRCANFIVK 69
           K++   AW  G + LKI+   +    PQ  +V VRI A G+C +D     T+  A+    
Sbjct: 1   KSRAAVAWAAG-QPLKIE--EVDVEMPQKGEVLVRIVATGVCHTDAF---TLSGADPEGV 54

Query: 70  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR----- 124
            P+++GHE AGI+E VG  V S++VGD V       CG C  C +G  NLC  +R     
Sbjct: 55  FPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGK 114

Query: 125 ---------FF--GSPPTN----GSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVG 167
                    F   G P  +     + +   V P     K+     LEE  +  C  ++ G
Sbjct: 115 GLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCG-VTTG 173

Query: 168 VHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224
           + A    A V     V + G G IGL  +  AR   A RII  D++  +  +A+ LGA
Sbjct: 174 IGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA 231

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 84.5 bits (209), Expect = 5e-19
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 19/221 (8%)

Query: 28  IQPYHLPTL--GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           + P+H      G +DV V+I   G+C SD+H   T++      + P+V GHE  GI+ ++
Sbjct: 25  LSPFHFSRRENGDEDVTVKILYCGVCHSDLH---TIKNEWGFTRYPIVPGHEIVGIVTKL 81

Query: 86  GSEVKSLEVGDRVALEPGI---SCGHCSLCKAGSYNLCPEMRF----FGSPPTN--GSLA 136
           G  VK  + GDRV +  G+   SC  C  C     N CP+M F     G   T   G  +
Sbjct: 82  GKNVKKFKEGDRVGV--GVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYS 139

Query: 137 HKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT 194
             +V       + PDN+ L+ GA  +C  ++V           P  ++ + G G +G V 
Sbjct: 140 DMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVA 199

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           +   +AFG    +I+    +       LGAD +  VSTD E
Sbjct: 200 VKIGKAFGLKVTVISSSSNKEDEAINRLGAD-SFLVSTDPE 239

Length = 360

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 24/222 (10%)

Query: 16  MAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA--NFIVK 69
           M AW L    G+  LK+    +P  GP +V VR+ A+    S  +    +        VK
Sbjct: 1   MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAV----SLNYRDLLILNGRYPPPVK 56

Query: 70  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 129
            P++   + AG +  VG  V   +VGDRV   P            G      +       
Sbjct: 57  DPLIPLSDGAGEVVAVGEGVTRFKVGDRVV--PTFFPNW----LDGPPTA-EDEASALGG 109

Query: 130 PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVMIM 185
           P +G LA  VV P +   + PD++S EE A   P + G+ A         + P   V++ 
Sbjct: 110 PIDGVLAEYVVLPEEGLVRAPDHLSFEEAA-TLPCA-GLTAWNALFGLGPLKPGDTVLVQ 167

Query: 186 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           G+G + L  L  A+A GA R+I T    ++L  A+ LGAD  
Sbjct: 168 GTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHV 208

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 35/218 (16%)

Query: 37  GPQ--DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94
            P+  +V+++I A G+C +D +   T+  A+     P+++GHE AGI+E VG  V S++ 
Sbjct: 24  PPKAGEVRIKILATGVCHTDAY---TLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP 80

Query: 95  GDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGS--------LAH------ 137
           GD V       CG C  CK+G  NLC ++R     G  P   S        + H      
Sbjct: 81  GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTST 140

Query: 138 ----KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVMIMGSG 188
                VV    +  K+     L++  +   L  GV          A V P + V + G G
Sbjct: 141 FSEYTVVAEISVA-KINPEAPLDKVCL---LGCGVTTGYGAVLNTAKVEPGSTVAVFGLG 196

Query: 189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
            +GL  +  A+A GA RII  D++  +  +A+  GA +
Sbjct: 197 AVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD 234

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 62/221 (28%), Positives = 87/221 (39%), Gaps = 44/221 (19%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP  V VR+ A G+   D    +    A      P ++G + AG++E VG  V    
Sbjct: 23  PQPGPGQVLVRVHASGVNPLDTKIRR--GGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
           VGD V    G                       G     GSLA   V  A+L    P N+
Sbjct: 81  VGDEVYGCAGG---------------------LGGLQ--GSLAEYAVVDARLLALKPANL 117

Query: 154 SLEEGAMCEPLSVGVHA----CRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIII 208
           S+ E A   PL VG+ A      RA V     V+I  G+G +G V +  A+A GA   + 
Sbjct: 118 SMREAA-ALPL-VGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA--RVY 173

Query: 209 TDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQALM 249
                ++ + AR+LGAD              Y+   V+ + 
Sbjct: 174 ATASSEKAAFARSLGADPII----------YYRETVVEYVA 204

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 29/213 (13%)

Query: 41  VKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVAL 100
           V +++    ICGSD H  +    A       +V+GHE  G + E G +V+ +++GD V++
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTA----PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSV 91

Query: 101 EPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL-------------AHKVVHPAK--L 145
              I+CG C  CK G   +C  +    +P   G+              +  V+ P     
Sbjct: 92  PFNIACGRCRNCKEGHTGVCLNV----NPARAGAAYGYVDMGGWVGGQSEYVMVPYADFN 147

Query: 146 CYKLPD-NVSLEE----GAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA 200
             K PD + +LE+      + +    G H    A VGP + V I G+GP+GL    +A+ 
Sbjct: 148 LLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQL 207

Query: 201 FGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
            GA  +I+ D++  RL+ AR+ G  ET  +S D
Sbjct: 208 LGAAVVIVGDLNPARLAQARSFGC-ETVDLSKD 239

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 80.9 bits (201), Expect = 6e-18
 Identities = 63/221 (28%), Positives = 90/221 (40%), Gaps = 60/221 (27%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI----------VKKP 71
           G + L+ +   +P  GP +V VR  A+G+              NFI          +  P
Sbjct: 10  GPEVLEYEDVPVPEPGPGEVLVRNTAIGV--------------NFIDTYFRSGLYPLPLP 55

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
            V+G E AG++E VG  V   +VGDRVA                          +  PP 
Sbjct: 56  FVLGVEGAGVVEAVGPGVTGFKVGDRVA--------------------------YAGPP- 88

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SG 188
            G+ A   V PA    KLPD +S E  A  + + L+          V P   V++   +G
Sbjct: 89  -GAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG 147

Query: 189 PIGLVTLLA--ARAFGAPRIIITDVDVQRLSIARNLGADET 227
            +GL  LL   A+A GA  +I T    ++  +AR  GAD  
Sbjct: 148 GVGL--LLTQWAKALGA-TVIGTVSSEEKAELARAAGADHV 185

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 80.7 bits (199), Expect = 9e-18
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 21/201 (10%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI-GHECAGIIEEVGSEVKS 91
           +P  GP ++ VR++A G+C +D+H  +     +  V +P V  GHE  G +   G++   
Sbjct: 22  VPRPGPGELLVRVRACGVCRTDLHVSE----GDLPVHRPRVTPGHEVVGEVAGRGADAGG 77

Query: 92  LEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLC 146
             VGDRV    GI     +CG C  C+ G+ NLCP  R+ G   T+G  A     PA   
Sbjct: 78  FAVGDRV----GIAWLRRTCGVCRYCRRGAENLCPASRYTGW-DTDGGYAEYTTVPAAFA 132

Query: 147 YKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP 204
           Y+LP      E A  +C  + +G  A  RA++ P   + + G G    +T   A A GA 
Sbjct: 133 YRLPTGYDDVELAPLLCAGI-IGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT 191

Query: 205 RIIIT-DVDVQRLSIARNLGA 224
             ++T     +RL++A  LGA
Sbjct: 192 VHVMTRGAAARRLALA--LGA 210

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 13/198 (6%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           L  L   +  V+++  G+C +D+H    +   +F  K   ++GHE  GI++EVG  V SL
Sbjct: 20  LRPLKHGEALVKMEYCGVCHTDLH----VANGDFGDKTGRILGHEGIGIVKEVGPGVTSL 75

Query: 93  EVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD 151
           +VGDRV++      CGHC  C  G   LC  ++  G    +G +A + +  A    K+P+
Sbjct: 76  KVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGY-TVDGGMAEQCIVTADYAVKVPE 134

Query: 152 NVSLEEGAMCEPLSVGV---HACRRANVGPETNVMIMGSGPIG-LVTLLAARAFGAPRII 207
              L+          GV    A + + + P   + I G+G +G L    A   F A ++I
Sbjct: 135 G--LDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVI 191

Query: 208 ITDVDVQRLSIARNLGAD 225
             D++  +L++A+ +GAD
Sbjct: 192 AVDINDDKLALAKEVGAD 209

Length = 338

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 9/197 (4%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V ++++A G+C SD         A   +  P V GHE  G I+ VG  V   
Sbjct: 20  VPLPGPGEVLIKVEACGVCHSDAF---VKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRW 76

Query: 93  EVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD 151
           +VGDRV +   G  CG C  C+ G +  C   +  G     G   + +     L  ++PD
Sbjct: 77  KVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALA-RIPD 135

Query: 152 NVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209
           ++   E A  +C  ++   +A R +   P   V + G G +G + +  A   G  R +  
Sbjct: 136 DLDAAEAAPLLCAGVTT-FNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAI 193

Query: 210 DVDVQRLSIARNLGADE 226
                +  +AR LGA  
Sbjct: 194 SRGSDKADLARKLGAHH 210

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.6 bits (192), Expect = 9e-17
 Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 41/210 (19%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDV----HHFKTMRCANFIVKKPMVIGHECAGI 81
           L+I+   +P  G  +V +R++A+G+  +D       +            P  +G+E AG+
Sbjct: 15  LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP--PPL----PARLGYEAAGV 68

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +E VG+ V    VGDRV++ P                              G+ A   + 
Sbjct: 69  VEAVGAGVTGFAVGDRVSVIP-----------------------AADLGQYGTYAEYALV 105

Query: 142 PAKLCYKLPDNVSLEEGAMCEPLSVGVHAC--RRANVGPETNVMIMG-SGPIGLVTLLAA 198
           PA    KLPD +S  E A      +  +      A + P  +V+I   S  +GL  +  A
Sbjct: 106 PAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIA 165

Query: 199 RAFGAPRIIITD--VDVQRLSIARNLGADE 226
            A GA  I  T        L     LGA  
Sbjct: 166 NAAGATVIATTRTSEKRDAL---LALGAAH 192

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 29/187 (15%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP------MVIGHECAGIIEEVGS 87
           P   P +V VR   +G+CG+D                       +V+GHE  G++EEVG 
Sbjct: 21  PEPTPGEVLVRTLEVGVCGTDRE------IVAGEYGTAPPGEDFLVLGHEALGVVEEVGD 74

Query: 88  EVKSLEVGDRVALEPGI---SCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHP 142
               L  GD V           G C  C+ G  + C    +   G    +G +    V  
Sbjct: 75  G-SGLSPGDLVV---PTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDD 130

Query: 143 AKLCYKLPDNVSLEEGAMCEPLSVGVHA-------CRRANVGPETNVMIMGSGPIGLVTL 195
            +   K+P +++ + G + EPLSV   A        +R         +++G+GPIGL+  
Sbjct: 131 PEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAA 189

Query: 196 LAARAFG 202
           L  R  G
Sbjct: 190 LLLRLRG 196

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 68/218 (31%), Positives = 94/218 (43%), Gaps = 39/218 (17%)

Query: 38  PQDVKVRIKAL--GICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           PQ ++VRIK L   IC +D+  +K    A      P ++GHE AGI+E VG  V+ L+ G
Sbjct: 33  PQKMEVRIKILYTSICHTDLSAWKGENEAQ--RAYPRILGHEAAGIVESVGEGVEDLKAG 90

Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRF--------------FGSPPTNGSLAH---- 137
           D V       CG C  CK    NLC   R               F +      + H    
Sbjct: 91  DHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNT 150

Query: 138 ------KVVHPAKLC-YKLPDNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVMIM 185
                  V+  A  C  K+  N  L++  M   LS GV      A   ANV   ++V I 
Sbjct: 151 STFTEYTVLDSA--CVVKIDPNAPLKK--MSL-LSCGVSTGVGAAWNTANVQAGSSVAIF 205

Query: 186 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223
           G G +GL     ARA GA +II  D++ ++    + +G
Sbjct: 206 GLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMG 243

Length = 381

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 49/205 (23%)

Query: 34  PTLGPQD-VKVRIKALGICGSDV------HHFKTMRCANFIVKKPMVIGHECAGIIEEVG 86
           P  G    V++R++A G+   D+      +  K           P V G E AG++E VG
Sbjct: 22  PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK--------PPLPFVPGSEVAGVVEAVG 73

Query: 87  SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLC 146
             V   +VGDRV                                  G  A +VV PA   
Sbjct: 74  EGVTGFKVGDRV---------------------------VALTGQ-GGFAEEVVVPAAAV 105

Query: 147 YKLPDNVSLEEGAMCEPLSVGV--HAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFG 202
           + LPD +S EE A   P++ G   HA  RRA + P   V+++G +G +GL  +  A+A G
Sbjct: 106 FPLPDGLSFEEAA-ALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALG 164

Query: 203 APRIIITDVDVQRLSIARNLGADET 227
           A R+I      ++L++AR LGAD  
Sbjct: 165 A-RVIAAASSEEKLALARALGADHV 188

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 62/203 (30%), Positives = 85/203 (41%), Gaps = 43/203 (21%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIEEVGSEVKS 91
           PT GP +V VR+ A G+   D +    +R   +      P V G + AG++E VG  V  
Sbjct: 23  PTPGPGEVLVRVHASGVNPVDTY----IRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDG 78

Query: 92  LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD 151
           L+VGDRV L         +L                     G+ A  VV PA     LPD
Sbjct: 79  LKVGDRVWL--------TNLGWGRRQ---------------GTAAEYVVVPADQLVPLPD 115

Query: 152 NVSLEEGAMCEPLSVGVHAC-------RRANVGPETNVMIMG-SGPIGLVTLLAARAFGA 203
            VS E+GA     ++G+ A         RA       V++ G SG +G   +  AR  GA
Sbjct: 116 GVSFEQGA-----ALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA 170

Query: 204 PRIIITDVDVQRLSIARNLGADE 226
            R+I T    +   + R  GAD 
Sbjct: 171 -RVIATASSAEGAELVRQAGADA 192

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 14/203 (6%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P LG  DV V++   G+C +D+ ++      N     P+ +GHE +G + + G+   S 
Sbjct: 18  IPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNH--ALPLALGHEISGRVIQAGAGAASW 75

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
            +G  V +   I CG C LCK G   +C   +  G+    G  +H VV    LC  + D 
Sbjct: 76  -IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLC--VVDE 132

Query: 153 VSLEEGAM--------CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP 204
             L    +         + ++    A  +A +     V+++G+G +G   +  A+A GA 
Sbjct: 133 ARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA 192

Query: 205 RIIITDVDVQRLSIARNLGADET 227
            + I D+D ++L + +  GAD T
Sbjct: 193 VVAI-DIDPEKLEMMKGFGADLT 214

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 38/148 (25%)

Query: 18  AWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF--IVKKP 71
           A +L    G+  LK++   LP     +V+VR++A G+  +D+      R   +    K P
Sbjct: 2   AVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADL----MARQGLYDSAPKPP 57

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
            V G ECAG +E VG  VK  +VGDRV            L + G Y              
Sbjct: 58  FVPGFECAGTVEAVGEGVKDFKVGDRVM----------GLTRFGGY-------------- 93

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGA 159
               A  V  PA   + LPD +S EE A
Sbjct: 94  ----AEVVNVPADQVFPLPDGMSFEEAA 117

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 74.9 bits (185), Expect = 9e-16
 Identities = 57/201 (28%), Positives = 80/201 (39%), Gaps = 36/201 (17%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +PT  P +V V++ A  +   D    +           P + G + AG +  VGS V   
Sbjct: 21  IPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRF 80

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           +VGD V                  +   P           G+LA  VV P     K P+ 
Sbjct: 81  KVGDEV------------------FGRLPPKGG-------GALAEYVVAPESGLAKKPEG 115

Query: 153 VSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRII 207
           VS EE A   P++ G+ A         V P   V+I G SG +G   +  A+A GA    
Sbjct: 116 VSFEEAA-ALPVA-GLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA---H 170

Query: 208 ITDVDVQR-LSIARNLGADET 227
           +T V   R   + R+LGADE 
Sbjct: 171 VTGVCSTRNAELVRSLGADEV 191

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 40/210 (19%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECA 79
           G + L++     P  GP +V +R+ A G+  +D+      R   +        ++G E A
Sbjct: 11  GPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADL----LQRQGLYPPPPGASDILGLEVA 66

Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKV 139
           G++  VG  V   +VGDRV          C+L   G Y                  A  V
Sbjct: 67  GVVVAVGPGVTGWKVGDRV----------CALLAGGGY------------------AEYV 98

Query: 140 VHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHA-CRRANVGPETNVMIMG--SGPIGLVTL 195
           V PA     +P+ +SL E A + E          +   +     V+I G  SG +G   +
Sbjct: 99  VVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG-VGTAAI 157

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGAD 225
             A+A GA R+I T    ++L   R LGAD
Sbjct: 158 QLAKALGA-RVIATAGSEEKLEACRALGAD 186

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 47/172 (27%)

Query: 40  DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99
           +V+V +KA G+   DV     +     +      +G EC+GI+  VGS V  L+VGDRV 
Sbjct: 2   EVEVEVKAAGLNFRDV-----LVALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVM 56

Query: 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA 159
              G++                           G+ A  V   A+L  K+PD++S EE A
Sbjct: 57  ---GLA--------------------------PGAFATHVRVDARLVVKIPDSLSFEEAA 87

Query: 160 MCEPLSVGVHAC-------RRANVGPETNVMIM-GSGPIGLVTLLAARAFGA 203
                ++ V            A +    +V+I   +G +G   +  A+  GA
Sbjct: 88  -----TLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGA 134

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 69/224 (30%), Positives = 94/224 (41%), Gaps = 46/224 (20%)

Query: 38  PQDVKVRIKAL--GICGSDVHHFK-TMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94
           PQ ++VRIK L   +C +DV+ ++   +   F    P ++GHE AGI+E VG  V  L+ 
Sbjct: 25  PQAMEVRIKILHTSLCHTDVYFWEAKGQTPLF----PRILGHEAAGIVESVGEGVTDLKP 80

Query: 95  GDRVALEPGISCGHCSLCKAGSYNLCPEMRF---FGSPPTNGS---------LAH----- 137
           GD V       C  C  CK+   N+C  +R     G    +G          + H     
Sbjct: 81  GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTS 140

Query: 138 -----KVVHP---AKLCYKLP-DNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVM 183
                 VVH    AK+  + P D V L        LS GV      A   A V   + V 
Sbjct: 141 TFSEYTVVHVGCVAKINPEAPLDKVCL--------LSCGVSTGLGAAWNVAKVKKGSTVA 192

Query: 184 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           I G G +GL     AR  GA RII  D++  +   A+  G  E 
Sbjct: 193 IFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEF 236

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 40/247 (16%)

Query: 14  QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKT----MRCANFIVK 69
           +  A  + G   L+++ + LP +   ++ VR+ +  +C S            +  N + K
Sbjct: 2   KTKAWRMYGKGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAK 61

Query: 70  KPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 128
           +P+++GHE AG I +VG + +   + G R  ++P +       C   SY           
Sbjct: 62  EPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYP-------- 113

Query: 129 PPTNGSLAHKVVHPAKL----CYKLPDNVSLEEGAMCEPLS--VG-VHACRRANVGPETN 181
               G LA   + P ++    C  + +     E ++ EPLS  +G   A      G   +
Sbjct: 114 ----GGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRH 169

Query: 182 VM----------IMGSGPIGLVTLLAARAFGAP----RIIITDVDVQRLSIARNLGADET 227
            M          + G+GP+GL+ +    A   P     +++TDV+ +RL+ A+ L   E 
Sbjct: 170 RMGIKPGGNTAILGGAGPMGLMAI--DYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA 227

Query: 228 AKVSTDI 234
           A    ++
Sbjct: 228 ASRGIEL 234

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 40/206 (19%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--VIGHECAGIIE 83
           L +    LP     +V +R+ A G+   D+      R   +        ++G E AG + 
Sbjct: 15  LVLVEVPLPVPKAGEVLIRVAAAGVNRPDL----LQRAGKYPPPPGASDILGLEVAGEVV 70

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
            VG  V   +VGDRV          C+L   G Y                  A  V  PA
Sbjct: 71  AVGEGVSRWKVGDRV----------CALVAGGGY------------------AEYVAVPA 102

Query: 144 KLCYKLPDNVSLEEGAMCEP---LSVGVHACRRANVGPETNVMIM-GSGPIGLVTLLAAR 199
                +P+ +SL E A   P    +V  +  +R  +     V+I  G+  IG   +  A+
Sbjct: 103 GQVLPVPEGLSLVEAAAL-PETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAK 161

Query: 200 AFGAPRIIITDVDVQRLSIARNLGAD 225
           AFGA R+  T    ++ +    LGAD
Sbjct: 162 AFGA-RVFTTAGSDEKCAACEALGAD 186

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 16/181 (8%)

Query: 73  VIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
           V+GHE  G +  +            L +G RV     + CG C  C+ G    C  +R +
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 127 GSPPTN------GSLAHKVVHPAKL-CYKLPDNV--SLEEGAMCEPLSVGVHACRRANVG 177
           G    +      G  A     PA      +PD++  ++   A C   +V + A   A   
Sbjct: 61  GHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATV-MAALEAAGDL 119

Query: 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMW 237
               V+++G+G +GL    AA A GA R++  D    R  +A + GA   A+     E  
Sbjct: 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQ 179

Query: 238 G 238
           G
Sbjct: 180 G 180

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 21/236 (8%)

Query: 13  NQNMA-AWLLGIKTLKIQPYHLPTL--GPQDVKVRIKALGICGSDVHHFKTMRCANFIVK 69
           +QN A  W    ++  + P+H      G  DV V+I   G+C SD+H   T++      +
Sbjct: 3   DQNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLH---TIKNHWGFSR 59

Query: 70  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRF-FG 127
            P++ GHE  GI  +VG  V   + GDRV +   I SC  C  C     N CP++ F + 
Sbjct: 60  YPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYN 119

Query: 128 SPPTNGS-----LAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPET 180
           S  ++G+      +  +V   +    +PD +  + GA  +C  ++V     +   +  E+
Sbjct: 120 SRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITV-YSPMKYYGMTKES 178

Query: 181 --NVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADETAKVSTD 233
              + + G G +G + +   +AFG    +I+   + +R +I R LGAD +  V+TD
Sbjct: 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGAD-SFLVTTD 232

Length = 375

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 33/238 (13%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGI--------CGSDVHHFKTMRCANFIVKKPMVIG 75
           + ++++   +P LGP +V V + A G+         G  V  F  +R    +     +IG
Sbjct: 23  QAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGKLDLPFHIIG 82

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSL-------CKAGSYNLCPEMRFFGS 128
            + +G++  VG  V   +VGD V          C          + G   L  E R +G 
Sbjct: 83  SDASGVVWRVGPGVTRWKVGDEVVA-------SCLQVDLTAPDGRDGDPMLSSEQRIWGY 135

Query: 129 PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPETNV 182
               GS A   +         P +++ EE A C  L  G  A R+      A V P  NV
Sbjct: 136 ETNFGSFAEFALVKDYQLMPKPKHLTWEEAA-CPGL-TGATAYRQLVGWNPAAVKPGDNV 193

Query: 183 MIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR 239
           +I G +G +G      ARA G   + +     ++    R+LGA+       D   WGR
Sbjct: 194 LIWGAAGGLGSYATQLARAGGGNPVAVVS-SPEKAEYCRSLGAEAVID-RNDFGHWGR 249

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 48/169 (28%)

Query: 43  VRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP 102
           + ++A G+      +F+ +  A  +     V+G ECAG++  VG  V  L VGDRV    
Sbjct: 1   IEVRAAGL------NFRDVLIALGLYPGEAVLGGECAGVVTRVGPGVTGLAVGDRVM--- 51

Query: 103 GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE 162
           G+                            G+ A +VV  A+L   +PD  S EE A   
Sbjct: 52  GL--------------------------APGAFATRVVTDARLVVPIPDGWSFEEAA--- 82

Query: 163 PLSVGV------HA-CRRANVGPETNVMI-MGSGPIGLVTLLAARAFGA 203
             +V V      +A    A + P  +V+I   +G +G   +  AR  GA
Sbjct: 83  --TVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLARHLGA 129

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 62/225 (27%), Positives = 92/225 (40%), Gaps = 28/225 (12%)

Query: 34  PTLGPQDVKVRIKALGICGSDVH------------HFKTMRCANFIVKKPMVIGHECAGI 81
           P LGP +V V + A G+  ++V               +  R   +      + G + +GI
Sbjct: 38  PELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPY-----HIGGSDASGI 92

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +  VG  VK+ +VGD V +   +  G+      G     P  R +G     GS A   + 
Sbjct: 93  VWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALV 152

Query: 142 PAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPETNVMIMG-SGPIGLVT 194
            A      P ++S EE A    L VG  A R         V P  NV+I G SG +G + 
Sbjct: 153 QATQLMPKPKHLSWEEAA-AYML-VGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMA 210

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR 239
           +  ARA GA  + +   + ++    R LGA E      D + WG 
Sbjct: 211 IQLARAAGANPVAVVSSE-EKAEYCRALGA-EGVINRRDFDHWGV 253

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 40  DVKVRIKALGICGSDVHHFKTMRCANFIVKK-PMVIGHECAGIIEEVGSEVKSLEVGDRV 98
            V VR   L IC +D  +++  R    + KK PM + HE  GI   V     + +VG +V
Sbjct: 27  WVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHE--GIGVVVSDPTGTYKVGTKV 84

Query: 99  ALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG 158
            + P        +      N  P  RF  S   +G +   V  P     KLPDNV  E  
Sbjct: 85  VMVPNTPVEKDEIIPE---NYLPSSRFRSSG-YDGFMQDYVFLPPDRLVKLPDNVDPEVA 140

Query: 159 AMCEPLSVGVHACRRAN---VGPETNVMIMGSGPIGLVTLLA 197
           A  E +SVGVHA  R           + + G G +G +T L 
Sbjct: 141 AFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALL 182

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 341

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 36/216 (16%)

Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
            P ++++++ +  +C SD+  +++   A F    P + GHE +GI+E +G  V   E GD
Sbjct: 36  QPLEIRIKVVSTSLCRSDLSAWESQ--ALF----PRIFGHEASGIVESIGEGVTEFEKGD 89

Query: 97  RVALEPGISCGHCSLCKAGSYNLCPEM--------------RFF--GSP-----PTNGSL 135
            V       CG C  C +G  N+C  +              RF   G P       +   
Sbjct: 90  HVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFS 149

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA-----CRRANVGPETNVMIMGSGPI 190
            + VVH +    K+     L +  +   LS GV A        A+V   ++V+I G G +
Sbjct: 150 EYTVVH-SGCAVKVDPLAPLHKICL---LSCGVAAGLGAAWNVADVSKGSSVVIFGLGTV 205

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           GL     A+  GA +II  D++ ++   A+  G  +
Sbjct: 206 GLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD 241

Length = 378

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 60/216 (27%)

Query: 38  PQDVKVRIKALGICGSDV--------HHFKTMRCANFIVKK----PMVIGHECAGIIEEV 85
           P  V +++ A  +   DV              R            P+ +G +C+G++ ++
Sbjct: 29  PNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDI 88

Query: 86  GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP--TNGSLAHKVVHPA 143
           GS VKS E+GD V                           +G+ P  + G+ A  VV P 
Sbjct: 89  GSGVKSFEIGDEV---------------------------WGAVPPWSQGTHAEYVVVPE 121

Query: 144 KLCYKLPDNVSLEEGAMCEPLSVGVHAC-------RRANVGPET----NVMIMG-SGPIG 191
               K P N+S EE A     S+                + P+      V+I+G SG +G
Sbjct: 122 NEVSKKPKNLSHEEAA-----SLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVG 176

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              +   +A+GA   + T      + + ++LGAD+ 
Sbjct: 177 TFAIQLLKAWGA--HVTTTCSTDAIPLVKSLGADDV 210

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 45/221 (20%)

Query: 16  MAAWLLGIK----TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCAN-FIVKK 70
           M AW+L        L ++   +P  G  +V V++ A G+   D         A       
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWK-----VIAWGPPAWS 55

Query: 71  -PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 129
            P V G + AG++  VG++V   +VGDRVA        H SL +                
Sbjct: 56  YPHVPGVDGAGVVVAVGAKVTGWKVGDRVAY-------HASLAR---------------- 92

Query: 130 PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMG- 186
              GS A   V  A+    LPD++S EE A   C  L+      ++  +     ++I G 
Sbjct: 93  --GGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGG 150

Query: 187 SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGAD 225
           +G +G   +  A+  G  R+I T    + + +   ++LGAD
Sbjct: 151 AGGVGSFAVQLAKRAGL-RVITTCSKRNFEYV---KSLGAD 187

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 44/211 (20%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-NFIVKKPMVIGHECAGII 82
             L++    +P  GP +V VR+ A  I  SD+    T+  A       P V G+E  G++
Sbjct: 12  LVLELVSLPIPPPGPGEVLVRMLAAPINPSDLI---TISGAYGSRPPLPAVPGNEGVGVV 68

Query: 83  EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
            EVGS V  L VG RV                                  G+    VV P
Sbjct: 69  VEVGSGVSGLLVGQRVLP----------------------------LGGEGTWQEYVVAP 100

Query: 143 AKLCYKLPDNVSLEEGAMC--EPLSVGVHACRRANVGPETNVMIM---GSGPIG--LVTL 195
           A     +PD++S E+ AM    PL+  +         P  + +I     S  +G  L+ L
Sbjct: 101 ADDLIPVPDSISDEQAAMLYINPLTAWL-MLTEYLKLPPGDWVIQNAANSA-VGRMLIQL 158

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADE 226
                F    ++  D  V+ L   + LGADE
Sbjct: 159 AKLLGFKTINVVRRDEQVEEL---KALGADE 186

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 34/148 (22%)

Query: 23  IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK-PMVIGHECAGI 81
           +K L +    +P  GP +V ++++A  I  SD+     ++      K  P+  G E +G 
Sbjct: 15  VKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF---LKGQYGSTKALPVPPGFEGSGT 71

Query: 82  IEEVG-SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVV 140
           +   G   +    +G RVA              AGSY               G+ A   V
Sbjct: 72  VVAAGGGPLAQSLIGKRVA------------FLAGSY---------------GTYAEYAV 104

Query: 141 HPAKLCYKLPDNVSLEEGAMC--EPLSV 166
             A+ C  LPD VS E+GA     PL+ 
Sbjct: 105 ADAQQCLPLPDGVSFEQGASSFVNPLTA 132

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 43/210 (20%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECA 79
           G + LK+    LP     +V V+++A G+  +DV     MR   +  +   P   G++  
Sbjct: 11  GPEVLKVVEADLPEPAAGEVVVKVEASGVSFADV----QMRRGLYPDQPPLPFTPGYDLV 66

Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKV 139
           G ++ +GS V   EVGDRVA          +L + G                    A  +
Sbjct: 67  GRVDALGSGVTGFEVGDRVA----------ALTRVGGN------------------AEYI 98

Query: 140 VHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIMG-SGPIGLVT 194
              AK    +P+ V   E A+C  L   V A     R A V     V+I G SG +G   
Sbjct: 99  NLDAKYLVPVPEGVDAAE-AVCLVL-NYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQAL 156

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGA 224
           L  A   GA  +  T    +  +  R LGA
Sbjct: 157 LELALLAGA-EVYGT-ASERNHAALRELGA 184

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 37/208 (17%)

Query: 25  TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE 84
            LK++   +P   P  V +R+KA G+  S++    T +  +  VK P V+G E  G +EE
Sbjct: 14  VLKLREIPIPEPKPGWVLIRVKAFGLNRSEIF---TRQGHSPSVKFPRVLGIEAVGEVEE 70

Query: 85  V-GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-RFFGSPPTNGSLAHKVVHP 142
             G        G RVA   G                   M R F     +GS A   + P
Sbjct: 71  APGGT---FTPGQRVATAMG------------------GMGRTF-----DGSYAEYTLVP 104

Query: 143 AKLCYKLPDNVSLEE-GAMCEPLSVGVHACRRA-NVGPETNVMIMG--SGPIGLVTLLAA 198
            +  Y +  ++S  E  A+ E       +  R+  + P   ++I G  S  +GL  L  A
Sbjct: 105 NEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSS-VGLAALKLA 163

Query: 199 RAFGAPRIIITDVDVQRLSIARNLGADE 226
           +A G   +  T    +R ++ + LGADE
Sbjct: 164 KALG-ATVTATTRSPERAALLKELGADE 190

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 32/212 (15%)

Query: 34  PTLGPQDVKVRIKALGICGSDV-----------------HHFKTMRCANFIVKKPMVIGH 76
           PT  P +V +R+ A G+  +D+                             +  P + G 
Sbjct: 24  PTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGA 83

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           +  G +  VG  V +  +G+RV ++P I             +   ++ + GS   +G  A
Sbjct: 84  DIVGRVVAVGEGVDTARIGERVLVDPSIR--------DPPEDDPADIDYIGS-ERDGGFA 134

Query: 137 HKVVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVT 194
              V PA+  Y +   +S  E        S   +   RA VG    V++ G SG +G   
Sbjct: 135 EYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSAL 194

Query: 195 L-LAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           + LA R       +      + +   R LGAD
Sbjct: 195 VQLAKRRGAIVIAVAGAAKEEAV---RALGAD 223

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 34 PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
          P  G +D+ VR++A+ +   D    K       +  +P ++G + +G++E VGSEV   +
Sbjct: 26 PVPGGRDLLVRVEAVSVNPVDT---KVRAGGAPVPGQPKILGWDASGVVEAVGSEVTLFK 82

Query: 94 VGDRV 98
          VGD V
Sbjct: 83 VGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 42/178 (23%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFK----TMRCANFIVKKPMVIGHECAGIIEEVGSEV 89
              GP +V+++++A  +   D+   +    TM         P   G E +G++  VG  V
Sbjct: 3   APPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMP------PYPFTPGFEASGVVRAVGPHV 56

Query: 90  KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL 149
             L VGD V    G                           + G  A  V  P     + 
Sbjct: 57  TRLAVGDEVIAGTG--------------------------ESMGGHATLVTVPEDQVVRK 90

Query: 150 PDNVSLEEGAMCEPLSVG---VHACRRANVGPETNVMIM-GSGPIGLVTLLAARAFGA 203
           P ++S EE   C    V    + A  RA +    +++I   +G  GL+ +  AR  GA
Sbjct: 91  PASLSFEEA--CALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGA 146

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 36/192 (18%)

Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK-PMVIGHECAGIIEEVGSEVKSLEVG 95
              +V+V  KA+GI   D +    +R   +     P  +G E AG++ +VGS VK ++VG
Sbjct: 27  AENEVQVENKAIGINYIDTY----IRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIKVG 82

Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSL 155
           DRV           +    G+Y                S  H V  PA     LPD +S 
Sbjct: 83  DRVVY---------AQSALGAY----------------SSVHNV--PADKAAILPDAISF 115

Query: 156 EEGAMCEPLSVGVHACRRAN--VGP-ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           E+ A      + V+   R    + P E  +    +G +GL+    A+A GA ++I T   
Sbjct: 116 EQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGS 174

Query: 213 VQRLSIARNLGA 224
            Q+   A+  GA
Sbjct: 175 AQKAQRAKKAGA 186

Length = 327

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
            +GL  +  A+A GA R+I  D   ++L +A+ LGAD  
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHV 39

Length = 131

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 41/129 (31%)

Query: 27  KIQPYHLPTLGPQDVKVRIKALGICGSDVHH-----FKTMRCANFIVKKPMVIGHECAGI 81
            I    +P  GP +V V+ + +GI  SD++                VK P   G E  G 
Sbjct: 19  SIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-------VKPPFDCGFEGVGE 71

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +  VG  V   +VGD VA                               + G+ A   V 
Sbjct: 72  VVAVGEGVTDFKVGDAVAT-----------------------------MSFGAFAEYQVV 102

Query: 142 PAKLCYKLP 150
           PA+    +P
Sbjct: 103 PARHAVPVP 111

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 42/210 (20%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--VIGHECA 79
           G+  LKI     P     DV +++ A G+  +D       R   +        ++G E A
Sbjct: 12  GVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADT----LQRQGKYPPPPGSSEILGLEVA 67

Query: 80  GIIEEVGSEVKSLEVGDRV-ALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           G +E+VGS+VK  + GDRV AL PG           G Y                  A  
Sbjct: 68  GYVEDVGSDVKRFKEGDRVMALLPG-----------GGY------------------AEY 98

Query: 139 VVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHACRR-ANVGPETNVMIM--GSGPIGLVT 194
            V        +P   + EE  A+ E         ++  +V    +V+I    SG +G   
Sbjct: 99  AVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASG-VGTAA 157

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGA 224
              A  +GA  II T  + +++   + L A
Sbjct: 158 AQLAEKYGAATIITTSSE-EKVDFCKKLAA 186

Length = 334

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 58/223 (26%), Positives = 80/223 (35%), Gaps = 47/223 (21%)

Query: 23  IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHH--FKTMRCA-NFIVKKPMVIGHECA 79
              L+I     PT G  +V VR        S +H+    T+R    +  + P + G E  
Sbjct: 13  ADVLEIGEVPKPTPGAGEVLVRTTL-----SPIHNHDLWTIRGTYGYKPELPAIGGSEAV 67

Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKV 139
           G+++ VG  VK L+VG RVA                                 G+ A   
Sbjct: 68  GVVDAVGEGVKGLQVGQRVA-------------------------VAPVH---GTWAEYF 99

Query: 140 VHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGP-ETNVMIMGSGPIG--LVT 194
           V PA     LPD +S E  A     PLS  +       V P +  +     G +G  +  
Sbjct: 100 VAPADGLVPLPDGISDEVAAQLIAMPLS-ALMLLDFLGVKPGQWLIQNAAGGAVGKLVAM 158

Query: 195 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMW 237
           L AAR      ++  D  V  L   R LG      VST+   W
Sbjct: 159 LAAARGINVINLVRRDAGVAEL---RALGIGPV--VSTEQPGW 196

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 30/99 (30%)

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
           P V G+E  G + +VGS VKSL+ GD V                               P
Sbjct: 64  PAVGGNEGVGEVVKVGSGVKSLKPGDWVIP---------------------------LRP 96

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 169
             G+     V PA    K+P++V  E+ A    LSV   
Sbjct: 97  GLGTWRTHAVVPADDLIKVPNDVDPEQAAT---LSVNPC 132

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 45/203 (22%)

Query: 21  LGIKTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVHHFKTMRCANFIVK-KPMVIGHEC 78
           L I T+K+    LP      ++ V++ A  +   D    K      F  K K   +G + 
Sbjct: 13  LTITTIKL---PLPNCYKDNEIVVKVHAAALNPVD---LKLYNSYTFHFKVKEKGLGRDY 66

Query: 79  AGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
           +G+I +VGS V S  +VGD V                G Y        +G     G+L+ 
Sbjct: 67  SGVIVKVGSNVASEWKVGDEV---------------CGIY-----PHPYGG---QGTLSQ 103

Query: 138 K-VVHPAKLCYKL---PDNVSLEEGAMCEPLSVG-----VHACRRANVGPETNVMIMGSG 188
             +V P K    +   P+N+SLEE A   PL +G     +    +  +GP++ V+++G  
Sbjct: 104 YLLVDPKKDKKSITRKPENISLEEAA-AWPLVLGTAYQILEDLGQ-KLGPDSKVLVLGGS 161

Query: 189 -PIGLVTL-LAARAFGAPRIIIT 209
             +G   + LA   +    ++ T
Sbjct: 162 TSVGRFAIQLAKNHYNIGTVVGT 184

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.98
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.98
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.98
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.98
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.98
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.98
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.97
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.96
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.96
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.96
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.96
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.95
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.95
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.95
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.94
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.94
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
PTZ00354	334	alcohol dehydrogenase; Provisional	99.94
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.94
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.94
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.94
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.93
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.93
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.93
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.93
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.93
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.93
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.93
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.93
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.92
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.92
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.91
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.91
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.9
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.9
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.9
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.9
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.89
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.89
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.89
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.88
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.87
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.8
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.72
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.68
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	98.55
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.09
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.34
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.29
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.21
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.87
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.75
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.73
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.61
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.56
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.44
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.41
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	96.4
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.29
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.21
PRK05993	277	short chain dehydrogenase; Provisional	96.14
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.04
PRK08017	256	oxidoreductase; Provisional	96.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.95
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.83
PRK06182	273	short chain dehydrogenase; Validated	95.72
PRK05693	274	short chain dehydrogenase; Provisional	95.61
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.58
PLN02494	477	adenosylhomocysteinase	95.56
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.48
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.4
PRK04148	134	hypothetical protein; Provisional	95.35
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.34
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.32
PRK08324	681	short chain dehydrogenase; Validated	95.28
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.25
PRK12828	239	short chain dehydrogenase; Provisional	95.11
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.08
PRK07060	245	short chain dehydrogenase; Provisional	95.01
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.95
PRK06139	330	short chain dehydrogenase; Provisional	94.8
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	94.72
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.71
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.71
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.63
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.57
PRK08177	225	short chain dehydrogenase; Provisional	94.55
PRK06057	255	short chain dehydrogenase; Provisional	94.52
KOG1252	362	consensus Cystathionine beta-synthase and related	94.48
PRK06949	258	short chain dehydrogenase; Provisional	94.47
PRK07831	262	short chain dehydrogenase; Provisional	94.4
PRK07814	263	short chain dehydrogenase; Provisional	94.36
PRK07825	273	short chain dehydrogenase; Provisional	94.31
PRK12742	237	oxidoreductase; Provisional	94.25
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.23
PRK06841	255	short chain dehydrogenase; Provisional	94.21
PRK05872	296	short chain dehydrogenase; Provisional	94.2
PRK05866	293	short chain dehydrogenase; Provisional	94.14
PRK05867	253	short chain dehydrogenase; Provisional	94.1
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.04
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	93.99
PRK11761	296	cysM cysteine synthase B; Provisional	93.98
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	93.96
PTZ00075	476	Adenosylhomocysteinase; Provisional	93.93
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	93.87
PRK07677	252	short chain dehydrogenase; Provisional	93.84
PRK12829	264	short chain dehydrogenase; Provisional	93.8
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	93.79
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.72
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.72
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.71
PRK06180	277	short chain dehydrogenase; Provisional	93.67
PRK07326	237	short chain dehydrogenase; Provisional	93.66
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	93.66
PRK07890	258	short chain dehydrogenase; Provisional	93.66
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.63
PRK06101	240	short chain dehydrogenase; Provisional	93.61
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	93.58
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.44
PRK08339	263	short chain dehydrogenase; Provisional	93.42
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.39
PRK06953	222	short chain dehydrogenase; Provisional	93.32
PRK09072	263	short chain dehydrogenase; Provisional	93.31
PRK07774	250	short chain dehydrogenase; Provisional	93.29
PRK08265	261	short chain dehydrogenase; Provisional	93.28
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.25
PLN03013	429	cysteine synthase	93.24
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.21
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.19
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.16
PRK07035	252	short chain dehydrogenase; Provisional	93.11
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	93.02
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.99
PRK06198	260	short chain dehydrogenase; Provisional	92.99
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.94
KOG0725	270	consensus Reductases with broad range of substrate	92.91
PRK08703	239	short chain dehydrogenase; Provisional	92.89
PRK07062	265	short chain dehydrogenase; Provisional	92.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.84
PRK07576	264	short chain dehydrogenase; Provisional	92.82
PRK08628	258	short chain dehydrogenase; Provisional	92.82
PRK07454	241	short chain dehydrogenase; Provisional	92.8
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.79
PRK07024	257	short chain dehydrogenase; Provisional	92.77
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	92.76
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	92.74
PLN02565	322	cysteine synthase	92.74
PLN02780	320	ketoreductase/ oxidoreductase	92.72
PRK09291	257	short chain dehydrogenase; Provisional	92.72
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	92.71
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	92.7
PRK12939	250	short chain dehydrogenase; Provisional	92.66
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	92.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	92.66
PRK07067	257	sorbitol dehydrogenase; Provisional	92.61
PLN03209	576	translocon at the inner envelope of chloroplast su	92.56
TIGR01136	299	cysKM cysteine synthases. This model discriminates	92.56
PRK06500	249	short chain dehydrogenase; Provisional	92.55
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	92.54
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.52
PRK06482	276	short chain dehydrogenase; Provisional	92.5
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.49
PRK07063	260	short chain dehydrogenase; Provisional	92.48
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	92.47
PRK08226	263	short chain dehydrogenase; Provisional	92.47
PRK10538	248	malonic semialdehyde reductase; Provisional	92.41
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	92.4
CHL00194	317	ycf39 Ycf39; Provisional	92.39
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.36
PRK09186	256	flagellin modification protein A; Provisional	92.33
PRK07478	254	short chain dehydrogenase; Provisional	92.32
PLN02253	280	xanthoxin dehydrogenase	92.32
PRK06914	280	short chain dehydrogenase; Provisional	92.32
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.28
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	92.26
PRK08862	227	short chain dehydrogenase; Provisional	92.25
PRK06125	259	short chain dehydrogenase; Provisional	92.24
PRK05884	223	short chain dehydrogenase; Provisional	92.22
PRK10669	558	putative cation:proton antiport protein; Provision	92.16
PRK06196	315	oxidoreductase; Provisional	92.16
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.14
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.14
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	92.12
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	92.1
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	92.08
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	92.06
PRK06172	253	short chain dehydrogenase; Provisional	92.01
PRK10717	330	cysteine synthase A; Provisional	91.96
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	91.95
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.95
PRK05854	313	short chain dehydrogenase; Provisional	91.91
PRK07109	334	short chain dehydrogenase; Provisional	91.87
PRK07904	253	short chain dehydrogenase; Provisional	91.86
PRK06194	287	hypothetical protein; Provisional	91.84
PRK08264	238	short chain dehydrogenase; Validated	91.82
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.81
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.8
PRK06483	236	dihydromonapterin reductase; Provisional	91.8
PRK08198	404	threonine dehydratase; Provisional	91.76
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	91.75
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.74
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	91.73
PRK05717	255	oxidoreductase; Validated	91.72
PRK08589	272	short chain dehydrogenase; Validated	91.7
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.64
PRK05876	275	short chain dehydrogenase; Provisional	91.59
PRK09242	257	tropinone reductase; Provisional	91.49
PRK08085	254	gluconate 5-dehydrogenase; Provisional	91.45
PRK05875	276	short chain dehydrogenase; Provisional	91.45
PRK08251	248	short chain dehydrogenase; Provisional	91.42
PRK06181	263	short chain dehydrogenase; Provisional	91.4
PRK08643	256	acetoin reductase; Validated	91.39
PRK06179	270	short chain dehydrogenase; Provisional	91.37
PRK07856	252	short chain dehydrogenase; Provisional	91.36
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	91.35
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	91.29
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.27
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.24
PRK07074	257	short chain dehydrogenase; Provisional	91.23
PRK08246	310	threonine dehydratase; Provisional	91.21
PRK07832	272	short chain dehydrogenase; Provisional	91.12
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	91.12
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	91.11
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.09
PRK06114	254	short chain dehydrogenase; Provisional	91.08
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.08
PRK08303	305	short chain dehydrogenase; Provisional	91.07
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.06
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	91.05
PRK13940	414	glutamyl-tRNA reductase; Provisional	91.0
PRK08639	420	threonine dehydratase; Validated	90.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.92
PRK08813	349	threonine dehydratase; Provisional	90.91
PRK06197	306	short chain dehydrogenase; Provisional	90.87
PRK06352	351	threonine synthase; Validated	90.87
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	90.82
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	90.76
PRK06138	252	short chain dehydrogenase; Provisional	90.74
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.73
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	90.72
PLN02686	367	cinnamoyl-CoA reductase	90.72
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	90.67
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	90.57
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	90.56
PRK06484	520	short chain dehydrogenase; Validated	90.55
PRK08267	260	short chain dehydrogenase; Provisional	90.51
PRK07806	248	short chain dehydrogenase; Provisional	90.47
TIGR02079	409	THD1 threonine dehydratase. This model represents	90.45
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	90.36
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	90.33
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	90.33
PLN02970	328	serine racemase	90.32
PRK08263	275	short chain dehydrogenase; Provisional	90.31
PRK07476	322	eutB threonine dehydratase; Provisional	90.27
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.27
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	90.27
PRK06720	169	hypothetical protein; Provisional	90.27
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	90.24
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	90.17
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.14
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.04
PRK06398	258	aldose dehydrogenase; Validated	90.04
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.01
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	89.99
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.91
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	89.9
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	89.87
PRK14031	444	glutamate dehydrogenase; Provisional	89.81
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	89.76
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	89.75
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.74
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.68
PRK08638	333	threonine dehydratase; Validated	89.63
PRK14030	445	glutamate dehydrogenase; Provisional	89.6
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	89.57
PRK07048	321	serine/threonine dehydratase; Validated	89.5
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.43
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.43
PRK06484	520	short chain dehydrogenase; Validated	89.41
PRK07102	243	short chain dehydrogenase; Provisional	89.41
PRK06721	352	threonine synthase; Reviewed	89.3
PLN03139	386	formate dehydrogenase; Provisional	89.29
PRK07097	265	gluconate 5-dehydrogenase; Provisional	89.28
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	89.28
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.26
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	89.26
PLN00011	323	cysteine synthase	89.23
PRK07574	385	formate dehydrogenase; Provisional	89.14
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.13
PRK02991	441	D-serine dehydratase; Provisional	89.1
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	89.08
PRK07409	353	threonine synthase; Validated	89.05
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	89.01
PRK07775	274	short chain dehydrogenase; Provisional	89.0
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	88.99
PRK06110	322	hypothetical protein; Provisional	88.92
PRK05638	442	threonine synthase; Validated	88.89
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	88.82
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.8
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.79
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	88.74
PRK08329	347	threonine synthase; Validated	88.7
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.69
PRK06940	275	short chain dehydrogenase; Provisional	88.66
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.61
PRK06381	319	threonine synthase; Validated	88.57
PRK14967	223	putative methyltransferase; Provisional	88.53
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	88.5
PRK06128	300	oxidoreductase; Provisional	88.43
PRK09224	504	threonine dehydratase; Reviewed	88.39
PRK12367	245	short chain dehydrogenase; Provisional	88.39
PRK12743	256	oxidoreductase; Provisional	88.35
PRK06924	251	short chain dehydrogenase; Provisional	88.34
PRK07791	286	short chain dehydrogenase; Provisional	88.29
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.24
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.19
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	88.14
PRK07577	234	short chain dehydrogenase; Provisional	88.14
PRK06523	260	short chain dehydrogenase; Provisional	88.11
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	88.06
PLN00203	519	glutamyl-tRNA reductase	88.03
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	87.95
PLN02477	410	glutamate dehydrogenase	87.85
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	87.84
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	87.78
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	87.77
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	87.75
PRK09496	453	trkA potassium transporter peripheral membrane com	87.72
PLN02928	347	oxidoreductase family protein	87.68
PLN02356	423	phosphateglycerate kinase	87.68
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.66
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	87.63
PRK08526	403	threonine dehydratase; Provisional	87.57
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	87.55
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	87.52
PRK13403	335	ketol-acid reductoisomerase; Provisional	87.49
PRK07985	294	oxidoreductase; Provisional	87.48
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	87.47
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	87.46
PRK08278	273	short chain dehydrogenase; Provisional	87.43
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	87.43
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.32
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.3
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	87.26
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.24
PRK06608	338	threonine dehydratase; Provisional	87.24
PRK06849	389	hypothetical protein; Provisional	87.22
PLN02583	297	cinnamoyl-CoA reductase	87.21
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.13
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	87.11
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	87.01
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	86.97
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	86.8
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	86.79
PRK13243	333	glyoxylate reductase; Reviewed	86.68
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	86.61
PRK09414	445	glutamate dehydrogenase; Provisional	86.5
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.42
PRK08197	394	threonine synthase; Validated	86.42
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.38
PRK07417	279	arogenate dehydrogenase; Reviewed	86.37
PRK08936	261	glucose-1-dehydrogenase; Provisional	86.34
PRK09135	249	pteridine reductase; Provisional	86.29
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	86.26
PLN02778	298	3,5-epimerase/4-reductase	86.18
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	86.09
PRK06382	406	threonine dehydratase; Provisional	86.07
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	86.07
PRK07591	421	threonine synthase; Validated	86.05
PRK12746	254	short chain dehydrogenase; Provisional	86.03
PRK06701	290	short chain dehydrogenase; Provisional	86.02
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	85.96
PRK06947	248	glucose-1-dehydrogenase; Provisional	85.92
PRK12937	245	short chain dehydrogenase; Provisional	85.91
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	85.89
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	85.85
TIGR02415	254	23BDH acetoin reductases. One member of this famil	85.81
PRK06487	317	glycerate dehydrogenase; Provisional	85.75
COG0281	432	SfcA Malic enzyme [Energy production and conversio	85.67
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	85.56
PRK13984	604	putative oxidoreductase; Provisional	85.54
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	85.52
PRK05650	270	short chain dehydrogenase; Provisional	85.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.42
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.37
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	85.37
PRK12483	521	threonine dehydratase; Reviewed	85.31
KOG1481	391	consensus Cysteine synthase [Amino acid transport	85.26
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	85.25
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	85.25
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	85.25
PRK07340	304	ornithine cyclodeaminase; Validated	85.25
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	85.24
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.21
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	85.16
PRK06932	314	glycerate dehydrogenase; Provisional	85.14
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.11
PRK12814	652	putative NADPH-dependent glutamate synthase small	85.04
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	84.99
PRK06141	314	ornithine cyclodeaminase; Validated	84.96
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.96
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	84.96
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	84.94
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.94
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	84.89
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.85
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	84.84
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.81
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	84.78
PRK08328	231	hypothetical protein; Provisional	84.74
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	84.72
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.69
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	84.67
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	84.67
PRK12747	252	short chain dehydrogenase; Provisional	84.66

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.7e-48  Score=330.92  Aligned_cols=226  Identities=34%  Similarity=0.520  Sum_probs=206.4

Q ss_pred             ccceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++|+++++.+++. +++.|++.|+|+++||+|+|+|+|+|++|++.++|....   ..+|++||||.+|+|+++|++|+.
T Consensus         2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~---~~~P~ipGHEivG~V~~vG~~V~~   78 (339)
T COG1064           2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV---PKLPLIPGHEIVGTVVEVGEGVTG   78 (339)
T ss_pred             cceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC---CCCCccCCcceEEEEEEecCCCcc
Confidence            5688999988764 999999999999999999999999999999999986432   359999999999999999999999


Q ss_pred             CCCCCeEEE-ccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           92 LEVGDRVAL-EPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        92 ~~~Gd~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      |++||+|.+ +...+|++|.||+.|+.++|++....+. +.+|+|+||+.+++++++++|+++++..||.+. ...|+|+
T Consensus        79 ~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy-~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~  157 (339)
T COG1064          79 LKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGY-TTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR  157 (339)
T ss_pred             CCCCCEEEecCccCCCCCCccccCcccccCCCccccce-eecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEee
Confidence            999999999 8889999999999999999999666654 489999999999999999999999999999776 4669999


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++...+++||++|+|.|.|++|++++|+|+++|+ +|++++++++|.+++++|||++++|.+  ++++.+.+++..
T Consensus       158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~~~  230 (339)
T COG1064         158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKEIA  230 (339)
T ss_pred             ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhHhhC
Confidence            9999999999999999999999999999999998 899999999999999999999999977  377777776643

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9e-48  Score=319.64  Aligned_cols=233  Identities=53%  Similarity=0.933  Sum_probs=217.8

Q ss_pred             cccceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      .++|+++++.+++++++.+.|.|++ .|+||+|++++++||.+|++++..++.+.+..+.|+++|||.+|+|+++|++|+
T Consensus         2 ~~~~~A~vl~g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    2 AADNLALVLRGKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             CcccceeEEEccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4678999999999999999999987 999999999999999999999999888777778999999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA  170 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~  170 (249)
                      ++++||||++.|...|+.|.+|++|++++|+.+.+......+|++++|+.+++++|+++||+++++++|++.++.+++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HA  161 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHA  161 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhh
Confidence            99999999999999999999999999999999998887789999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      .+++++++|+++||+|+|++|+++...||++|+.+|++++..++|++.+++|||+.+.+.....  -.+.+++..+
T Consensus       162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~--~~~~~~~~v~  235 (354)
T KOG0024|consen  162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS--SPQELAELVE  235 (354)
T ss_pred             hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc--cHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998766532  3444444443

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=3e-42  Score=289.00  Aligned_cols=228  Identities=30%  Similarity=0.432  Sum_probs=202.7

Q ss_pred             cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +++++++..+ ++|+++|+.+++|+++|||||+.++|+|++|...++|.+    +..+|+++|||++|+|+++|+.|+++
T Consensus         2 k~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~----p~~~P~vLGHEgAGiVe~VG~gVt~v   77 (366)
T COG1062           2 KTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD----PEGFPAVLGHEGAGIVEAVGEGVTSV   77 (366)
T ss_pred             CceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCC----CCCCceecccccccEEEEecCCcccc
Confidence            5788888866 589999999999999999999999999999999988754    34599999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc-------CC-----------CCCC--CceeEEEEecCCceEECCCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF-------GS-----------PPTN--GSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----------~~~~--g~~~~~~~~~~~~~~~ip~~  152 (249)
                      +|||+|+..+..+||+|.+|..+.++||..+...       ++           ....  ++|++|..+++..+++++++
T Consensus        78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~  157 (366)
T COG1062          78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD  157 (366)
T ss_pred             CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCC
Confidence            9999999999999999999999999999743211       11           0122  49999999999999999999


Q ss_pred             CChhhhccccc-hHHHHHH-HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCEP-LSVGVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~-l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      .+++.++++.+ ..+.+.+ ++.+++++|+++.|.|.|++|++++|-|+..|++++|+++.+++|++++++|||++++|.
T Consensus       158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~  237 (366)
T COG1062         158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNP  237 (366)
T ss_pred             CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecc
Confidence            99999998885 5677765 488999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcccHHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (249)
                      ++.. +..+.+.++|+
T Consensus       238 ~~~~-~vv~~i~~~T~  252 (366)
T COG1062         238 KEVD-DVVEAIVELTD  252 (366)
T ss_pred             hhhh-hHHHHHHHhcC
Confidence            7632 79999998886

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-41  Score=281.56  Aligned_cols=230  Identities=27%  Similarity=0.398  Sum_probs=197.7

Q ss_pred             cceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           14 QNMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        14 ~~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +.+++.+..+   ..+++.+++.|+|+++||+|+|+|+|||++|++.+.+... .  ..+|.++|||++|+|+++|++|+
T Consensus         9 k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg-~--s~~PlV~GHEiaG~VvkvGs~V~   85 (360)
T KOG0023|consen    9 KQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWG-L--SKYPLVPGHEIAGVVVKVGSNVT   85 (360)
T ss_pred             hhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCC-c--ccCCccCCceeeEEEEEECCCcc
Confidence            3455555544   3677799999999999999999999999999999987542 2  68999999999999999999999


Q ss_pred             CCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhccccc
Q 025712           91 SLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP  163 (249)
Q Consensus        91 ~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~  163 (249)
                      +|++||+|.+-.. -+|++|.+|.+++..||+++.+..      +....|+|++|+++++.+++++|++++.+.||.+.+
T Consensus        86 ~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLC  165 (360)
T KOG0023|consen   86 GFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLC  165 (360)
T ss_pred             cccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhh
Confidence            9999999998555 499999999999999999654332      223456799999999999999999999999997665


Q ss_pred             -hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh-hHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712          164 -LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIARNLGADETAKVSTDIEMWGRYK  241 (249)
Q Consensus       164 -~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~~~~ga~~vi~~~~~~~~~~~~~  241 (249)
                       ..|.|..+.+.++.||+++.|.|+|++|.+++|+||+||. +|.+++++. .|.+.++.|||+..++... ++++.+++
T Consensus       166 aGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~-d~d~~~~~  243 (360)
T KOG0023|consen  166 AGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTE-DPDIMKAI  243 (360)
T ss_pred             cceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecC-CHHHHHHH
Confidence             4488999999999999999999988899999999999999 788887776 7777778899999998774 38999999


Q ss_pred             HHHHHHh
Q 025712          242 MQWVQAL  248 (249)
Q Consensus       242 ~~~~~~~  248 (249)
                      ++.++.+
T Consensus       244 ~~~~dg~  250 (360)
T KOG0023|consen  244 MKTTDGG  250 (360)
T ss_pred             HHhhcCc
Confidence            9988753

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.2e-40  Score=272.27  Aligned_cols=231  Identities=26%  Similarity=0.384  Sum_probs=207.2

Q ss_pred             cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      ++++++.-+++ +|.++|+..++|+.+||+||+.++++|++|...+++..   ....+|.++|||++|+|+++|+.|+.+
T Consensus         7 ~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~---~~~~fP~IlGHEaaGIVESvGegV~~v   83 (375)
T KOG0022|consen    7 TCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKD---PEGLFPVILGHEAAGIVESVGEGVTTV   83 (375)
T ss_pred             EEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCC---ccccCceEecccceeEEEEecCCcccc
Confidence            47899988875 89999999999999999999999999999999998863   336789999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------C-------------CCCCceeEEEEecCCceEECCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------P-------------PTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------------~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      ++||+|+..+...|++|.+|+++..++|.+++...+        .             ....+|+||.+++...+.++++
T Consensus        84 k~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~  163 (375)
T KOG0022|consen   84 KPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDP  163 (375)
T ss_pred             CCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCC
Confidence            999999999999999999999999999987654431        0             1124999999999999999999


Q ss_pred             CCChhhhccccc-hHHHHHH-HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          152 NVSLEEGAMCEP-LSVGVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       152 ~~~~~~aa~~~~-~~~a~~~-l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      ..+++.++++.. ..|+|.+ ++.+++++|+++.|+|.|+||+++++-||+.|++++|++|-+++|.+..++||++++||
T Consensus       164 ~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN  243 (375)
T KOG0022|consen  164 SAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN  243 (375)
T ss_pred             CCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence            999999999884 7788866 48899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHHH
Q 025712          230 VSTDIEMWGRYKMQWVQA  247 (249)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~  247 (249)
                      ..+-.+..++.+++.|+.
T Consensus       244 p~d~~~~i~evi~EmTdg  261 (375)
T KOG0022|consen  244 PKDLKKPIQEVIIEMTDG  261 (375)
T ss_pred             hhhccccHHHHHHHHhcC
Confidence            884334588889888863

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3e-39  Score=282.71  Aligned_cols=216  Identities=33%  Similarity=0.613  Sum_probs=191.9

Q ss_pred             cceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           14 QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      .++++++.+++.+++++.+.| ++++||||||.+++||++|+.++.+...+.....+|.++|||++|+|+++  ++++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~   80 (343)
T PRK09880          4 KTQSCVVAGKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLK   80 (343)
T ss_pred             cceEEEEecCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCC
Confidence            367899999999999999997 68999999999999999999887543222223467999999999999999  788999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH  169 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~  169 (249)
                      +||+|++.+...|++|.+|+.+++++|.+....+..    ...|+|+||+.++++.++++|++++++++++..+++++|+
T Consensus        81 vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~  160 (343)
T PRK09880         81 EGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIH  160 (343)
T ss_pred             CCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHhhcHHHHHHH
Confidence            999999999999999999999999999987665431    2479999999999999999999999988887778889999


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++.+....+|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++++|+++++|+++
T Consensus       161 al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~  223 (343)
T PRK09880        161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN  223 (343)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc
Confidence            998777778999999999999999999999999977999999999999999999999998775

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=4.5e-38  Score=274.54  Aligned_cols=226  Identities=33%  Similarity=0.543  Sum_probs=198.7

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.+++.++++++|.|.|+++||+|||.++++|++|+..+.+.+..  +...|.++|||++|+|+++|++++.+++
T Consensus         1 mka~~~~~~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~~   78 (339)
T cd08239           1 MRGAVFPGDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVTHFRV   78 (339)
T ss_pred             CeEEEEecCCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCccCCC
Confidence            67888999999999999999999999999999999999999887664321  1235889999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHH
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR  173 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~  173 (249)
                      ||+|++.+...|++|.+|+.+.+++|.......+....|+|++|+.++.+.++++|+++++++|+++. ...+||++++.
T Consensus        79 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~  158 (339)
T cd08239          79 GDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRR  158 (339)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence            99999999999999999999999999876542223467999999999999999999999999988776 67899999988


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ..+++|++|||+|+|++|++++|+++.+|++.|++++++++|.++++++|++++++++.  ++ .+.+.+++
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~--~~-~~~~~~~~  227 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ--DD-VQEIRELT  227 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc--ch-HHHHHHHh
Confidence            88999999999999999999999999999955999999999999999999999998865  34 55565554

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.1e-37  Score=276.49  Aligned_cols=232  Identities=26%  Similarity=0.361  Sum_probs=200.8

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      .+|+++++.+++ .+.++|+|.|.|+++||+|||+++++|++|+..+.|...  ....+|.++|||++|+|+++|++++.
T Consensus         9 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~   86 (381)
T PLN02740          9 ITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENE--AQRAYPRILGHEAAGIVESVGEGVED   86 (381)
T ss_pred             eeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCc--ccCCCCccccccceEEEEEeCCCCCc
Confidence            468898898886 589999999999999999999999999999998887542  12357899999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-----------------------CCCCCceeEEEEecCCceEE
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-----------------------PPTNGSLAHKVVHPAKLCYK  148 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~g~~~~~~~~~~~~~~~  148 (249)
                      |++||+|++.+...|++|.+|+.+.+++|......+.                       ....|+|+||+.++.+.+++
T Consensus        87 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~  166 (381)
T PLN02740         87 LKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVK  166 (381)
T ss_pred             CCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEE
Confidence            9999999999999999999999999999987542110                       01259999999999999999


Q ss_pred             CCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          149 LPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       149 ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +|+++++++++++. ...++|+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++
T Consensus       167 iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~  246 (381)
T PLN02740        167 IDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD  246 (381)
T ss_pred             CCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcE
Confidence            99999999888766 577888876 5688999999999999999999999999999966999999999999999999999


Q ss_pred             EecCCCCcccHHHHHHHHHH
Q 025712          227 TAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       227 vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++|++..++++.+.+++++.
T Consensus       247 ~i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        247 FINPKDSDKPVHERIREMTG  266 (381)
T ss_pred             EEecccccchHHHHHHHHhC
Confidence            99877644468777777653

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=4.7e-38  Score=272.41  Aligned_cols=202  Identities=30%  Similarity=0.389  Sum_probs=177.6

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..   |..++++|+|.|.|+++||||||+++++|+.|..+++|..  ....+.|+++|.|++|+|+++|++++.
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~--~~~~~~P~i~G~d~aG~V~avG~~V~~   78 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLA--PPVRPLPFIPGSEAAGVVVAVGSGVTG   78 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCC--CCCCCCCCcccceeEEEEEEeCCCCCC
Confidence            46666663   4469999999999999999999999999999999998762  222468999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      |++||+|+..+.                         ....|+|+||..++++.++++|+++++++|++++ ...|||++
T Consensus        79 ~~~GdrV~~~~~-------------------------~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~  133 (326)
T COG0604          79 FKVGDRVAALGG-------------------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLA  133 (326)
T ss_pred             cCCCCEEEEccC-------------------------CCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999997520                         0046999999999999999999999999999887 57799999


Q ss_pred             HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +.. .++++|++|||+| +|+||.+++|+||++|+ .++++.+++++.++++++|++++++|.+  ++|.+.++++|.
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~--~~~~~~v~~~t~  208 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE--EDFVEQVRELTG  208 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHcC
Confidence            854 8899999999997 89999999999999998 6777778888888999999999999887  679999999885

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.1e-37  Score=273.47  Aligned_cols=229  Identities=29%  Similarity=0.412  Sum_probs=197.2

Q ss_pred             ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++..+ +.++++++|.|+|+++||+|||+++++|++|+..+.+.+.   ...+|.++|||++|+|+++|++++.++
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~~~~   78 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADP---EGVFPVILGHEGAGIVEAVGEGVTSVK   78 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCC---CCCCCeeeccccEEEEEEECCCCccCC
Confidence            567776655 4799999999999999999999999999999998877542   135689999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECCCCC
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDNV  153 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip~~~  153 (249)
                      +||+|++.+...|++|.+|+.+++++|......   +.                 ....|+|+||+.++.+.++++|+++
T Consensus        79 ~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l  158 (368)
T TIGR02818        79 VGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAA  158 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCC
Confidence            999999988889999999999999999864210   00                 0024799999999999999999999


Q ss_pred             Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++++++. .+.++|+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++.+++|+++++++|+++++|++
T Consensus       159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~  238 (368)
T TIGR02818       159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPN  238 (368)
T ss_pred             CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccc
Confidence            999998776 577899887 568899999999999999999999999999996799999999999999999999999877


Q ss_pred             CCcccHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (249)
                      +.++++.+.+++++.
T Consensus       239 ~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       239 DYDKPIQEVIVEITD  253 (368)
T ss_pred             ccchhHHHHHHHHhC
Confidence            544567777777653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.7e-37  Score=273.03  Aligned_cols=226  Identities=34%  Similarity=0.486  Sum_probs=195.9

Q ss_pred             ceEEEEec---------CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEe
Q 025712           15 NMAAWLLG---------IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV   85 (249)
Q Consensus        15 ~~~~~~~~---------~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~v   85 (249)
                      ||++++.+         ++.++++++|.|.|+++||+|||.+++||++|+..+.+.+    +..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~----~~~~p~i~GhE~~G~V~~v   76 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDR----PRPLPMALGHEAAGVVVEV   76 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCC----CCCCCccCCccceeEEEEe
Confidence            56777774         3679999999999999999999999999999999887753    2356899999999999999


Q ss_pred             cCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCc
Q 025712           86 GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKL  145 (249)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~  145 (249)
                      |++++++++||+|++.+...|++|.+|+.+++++|......   |.                 ....|+|+||+.++.++
T Consensus        77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~  156 (371)
T cd08281          77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS  156 (371)
T ss_pred             CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence            99999999999999887889999999999999999875321   10                 00137999999999999


Q ss_pred             eEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          146 CYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       146 ~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ++++|+++++++|+++. ...+||.++ +..++++|++|||+|+|++|++++|+|+.+|+..|++++.+++|+++++++|
T Consensus       157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~G  236 (371)
T cd08281         157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELG  236 (371)
T ss_pred             eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcC
Confidence            99999999999998776 467888886 5688999999999999999999999999999966999999999999999999


Q ss_pred             CCEEecCCCCcccHHHHHHHHHH
Q 025712          224 ADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       224 a~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +++++++++  +++.+.+++++.
T Consensus       237 a~~~i~~~~--~~~~~~i~~~~~  257 (371)
T cd08281         237 ATATVNAGD--PNAVEQVRELTG  257 (371)
T ss_pred             CceEeCCCc--hhHHHHHHHHhC
Confidence            999998765  678888877653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=6.7e-37  Score=272.14  Aligned_cols=225  Identities=28%  Similarity=0.502  Sum_probs=187.3

Q ss_pred             ceEEEEecCCCeEEEEecCCCCC-------CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLG-------PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~-------~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      |+++++.+++.++++++|.|.|+       ++||||||++++||++|+.++.|.+    ....|.++|||++|+|+++|+
T Consensus         3 mka~v~~~~~~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~----~~~~p~i~GhE~~G~V~~vG~   78 (393)
T TIGR02819         3 NRGVVYLGPGKVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT----TAPTGLVLGHEITGEVIEKGR   78 (393)
T ss_pred             ceEEEEecCCceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCC----CCCCCccccceeEEEEEEEcC
Confidence            77888999999999999999874       6899999999999999999887643    235689999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcc------ccCC---CCCCCceeEEEEecCC--ceEECCCCCCh-
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------FFGS---PPTNGSLAHKVVHPAK--LCYKLPDNVSL-  155 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~g~~~~~~~~~~~--~~~~ip~~~~~-  155 (249)
                      ++++|++||||++.+...|++|.+|+.+++++|....      +.+.   ....|+|+||+.++..  +++++|++++. 
T Consensus        79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~  158 (393)
T TIGR02819        79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQAL  158 (393)
T ss_pred             ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCccccc
Confidence            9999999999999988999999999999999999642      1221   1246999999999964  79999988653 


Q ss_pred             ---hhhc-cccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          156 ---EEGA-MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       156 ---~~aa-~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                         ..++ +..++.++|+++.+.++++|++|||.|+|++|++++|+|+++|+..+++++.+++|+++++++|++. +++.
T Consensus       159 ~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~~  237 (393)
T TIGR02819       159 EKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET-VDLS  237 (393)
T ss_pred             ccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE-EecC
Confidence               2333 4446889999988888999999999999999999999999999966776777889999999999974 5443


Q ss_pred             CCcccHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (249)
                      . .+++.+.+.+++
T Consensus       238 ~-~~~~~~~v~~~~  250 (393)
T TIGR02819       238 K-DATLPEQIEQIL  250 (393)
T ss_pred             C-cccHHHHHHHHc
Confidence            3 246666676655

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.4e-36  Score=268.16  Aligned_cols=229  Identities=26%  Similarity=0.372  Sum_probs=197.5

Q ss_pred             cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +|+++++..+ +.+++++++.|+|+++||+|||.++++|++|+..+.+.+.   ...+|.++|||++|+|+++|+++++|
T Consensus         2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~   78 (369)
T cd08301           2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGVTDL   78 (369)
T ss_pred             ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCCCcc
Confidence            5788888765 5699999999999999999999999999999998877532   24578999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC--------------C----CCCCceeEEEEecCCceEECCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS--------------P----PTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~----~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      ++||+|++.+...|++|.+|..+.++.|......   +.              .    ...|+|+||+.++...++++|+
T Consensus        79 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  158 (369)
T cd08301          79 KPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINP  158 (369)
T ss_pred             ccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCC
Confidence            9999999998999999999999999999875422   10              0    0348999999999999999999


Q ss_pred             CCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          152 NVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       152 ~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      ++++++++++. ...++|.++ +..++++|++|||+|+|++|++++|+++.+|+.+|+++++++++.++++++|++.+++
T Consensus       159 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~  238 (369)
T cd08301         159 EAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVN  238 (369)
T ss_pred             CCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence            99999988776 466888776 5588999999999999999999999999999867999999999999999999999998


Q ss_pred             CCCCcccHHHHHHHHH
Q 025712          230 VSTDIEMWGRYKMQWV  245 (249)
Q Consensus       230 ~~~~~~~~~~~~~~~~  245 (249)
                      ++..++++.+.+++++
T Consensus       239 ~~~~~~~~~~~v~~~~  254 (369)
T cd08301         239 PKDHDKPVQEVIAEMT  254 (369)
T ss_pred             ccccchhHHHHHHHHh
Confidence            7754346777776654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.2e-36  Score=267.75  Aligned_cols=227  Identities=26%  Similarity=0.398  Sum_probs=196.7

Q ss_pred             cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +||++++.+++ .+++++.|.|+|+++||+|||.++++|++|+..+.+..    ...+|.++|||++|+|+++|+++++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~----~~~~p~i~G~e~~G~V~~vG~~v~~~   76 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGI----NDEFPFLLGHEAAGVVEAVGEGVTDV   76 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCc----cccCCcccccceEEEEEEeCCCCccc
Confidence            58899999876 59999999999999999999999999999999887643    13568999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc--------CC----CCCCCceeEEEEecCCceEECCCCCChhhhcc
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--------GS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM  160 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~  160 (249)
                      ++||+|++.+...|++|.+|..+++.+|......        |.    ....|+|+||+.++.+.++++|+++++++|++
T Consensus        77 ~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~  156 (358)
T TIGR03451        77 APGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGL  156 (358)
T ss_pred             CCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhh
Confidence            9999999998899999999999999999752110        10    01359999999999999999999999998887


Q ss_pred             cc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712          161 CE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG  238 (249)
Q Consensus       161 ~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~  238 (249)
                      +. ...++|.++ +...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++++  +++.
T Consensus       157 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~  234 (358)
T TIGR03451       157 LGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG--TDPV  234 (358)
T ss_pred             hcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC--cCHH
Confidence            76 466778765 5578899999999999999999999999999966999999999999999999999998765  6788


Q ss_pred             HHHHHHHH
Q 025712          239 RYKMQWVQ  246 (249)
Q Consensus       239 ~~~~~~~~  246 (249)
                      +.++++++
T Consensus       235 ~~i~~~~~  242 (358)
T TIGR03451       235 EAIRALTG  242 (358)
T ss_pred             HHHHHHhC
Confidence            88877664

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2e-36  Score=268.14  Aligned_cols=227  Identities=22%  Similarity=0.364  Sum_probs=194.4

Q ss_pred             cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .|+++++.++. .++++++|.|.|+++||+|||.++++|++|+..+.+.      ..+|.++|||++|+|+++|+++++|
T Consensus        12 ~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~------~~~p~i~GhE~~G~V~~vG~~v~~~   85 (378)
T PLN02827         12 TCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ------ALFPRIFGHEASGIVESIGEGVTEF   85 (378)
T ss_pred             eeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCC------CCCCeeecccceEEEEEcCCCCccc
Confidence            47788888765 6999999999999999999999999999999887653      1468899999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccC--C------------------CCCCCceeEEEEecCCceEECCCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG--S------------------PPTNGSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~g~~~~~~~~~~~~~~~ip~~  152 (249)
                      ++||+|++.+...|++|.+|+.+++++|.......  .                  ....|+|+||+.++.+.++++|++
T Consensus        86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~  165 (378)
T PLN02827         86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL  165 (378)
T ss_pred             CCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCC
Confidence            99999999988899999999999999998743210  0                  002489999999999999999999


Q ss_pred             CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      +++++++.+. .+.++|.++ +..++++|++|||+|+|++|++++|+|+++|+..+++++.+++|.++++++|+++++++
T Consensus       166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~  245 (378)
T PLN02827        166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP  245 (378)
T ss_pred             CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence            9998888766 456777665 45789999999999999999999999999999668888889999999999999999987


Q ss_pred             CCCcccHHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (249)
                      ++.++++.+.+++++.
T Consensus       246 ~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        246 NDLSEPIQQVIKRMTG  261 (378)
T ss_pred             cccchHHHHHHHHHhC
Confidence            7543577777777653

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=2.1e-36  Score=267.10  Aligned_cols=230  Identities=27%  Similarity=0.425  Sum_probs=197.6

Q ss_pred             cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .||++++..+ +.++++++|.|.|+++||+|||+++++|++|+..+.+.+.   ...+|.++|||++|+|+++|++++++
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~   78 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADP---EGLFPVILGHEGAGIVESVGEGVTSV   78 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCc---cCCCCceeccceeEEEEEeCCCCccC
Confidence            3677776654 5799999999999999999999999999999998877542   13578999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECCCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip~~  152 (249)
                      ++||+|++.+...|++|.+|+.+++++|.+....   +.                 ....|+|+||+.++.+.++++|++
T Consensus        79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  158 (368)
T cd08300          79 KPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPE  158 (368)
T ss_pred             CCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCC
Confidence            9999999988899999999999999999764311   00                 002479999999999999999999


Q ss_pred             CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      +++++++++. .+.++|+++ +...+++|++|||+|+|++|++++|+|+.+|+..+++++++++|+++++++|+++++|+
T Consensus       159 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~  238 (368)
T cd08300         159 APLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNP  238 (368)
T ss_pred             CChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcc
Confidence            9999988776 577889876 56889999999999999999999999999999679999999999999999999999998


Q ss_pred             CCCcccHHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (249)
                      ++.++++.+.++++++
T Consensus       239 ~~~~~~~~~~v~~~~~  254 (368)
T cd08300         239 KDHDKPIQQVLVEMTD  254 (368)
T ss_pred             cccchHHHHHHHHHhC
Confidence            7643468888877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3e-36  Score=264.01  Aligned_cols=226  Identities=37%  Similarity=0.638  Sum_probs=185.1

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCc-eeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM-VIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~   92 (249)
                      ||++++..+.. .++++.+.|.+.+++|+|||++++||.+|++.+.+....   ...|. ++|||++|+|+++| .++.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~---~~~~~~i~GHE~~G~V~evG-~~~~~   76 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF---VPPGDIILGHEFVGEVVEVG-VVRGF   76 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC---CCCCCcccCccceEEEEEec-cccCC
Confidence            57777776654 447888777789999999999999999999999875421   23344 99999999999999 77889


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEEC-CCCCChhhhccccchHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKL-PDNVSLEEGAMCEPLSVG  167 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~i-p~~~~~~~aa~~~~~~~a  167 (249)
                      ++||||++.|...|++|.+|+.+.+++|.+....+..    ..+|+|+||+.++.++++.+ |++++.+.|++..+++++
T Consensus        77 ~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~~  156 (350)
T COG1063          77 KVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATA  156 (350)
T ss_pred             CCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhhhhcChhhhh
Confidence            9999999999999999999999999999965444332    26799999999997666655 677788888888899999


Q ss_pred             HHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712          168 VHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       168 ~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++. ......++.+++|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++.+++...  ++..+.+.++|
T Consensus       157 ~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~--~~~~~~~~~~t  234 (350)
T COG1063         157 YHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE--DDAGAEILELT  234 (350)
T ss_pred             hhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc--ccHHHHHHHHh
Confidence            8774 34445555699999999999999999999999999999999999999999 56666665443  26666666665


Q ss_pred             H
Q 025712          246 Q  246 (249)
Q Consensus       246 ~  246 (249)
                      .
T Consensus       235 ~  235 (350)
T COG1063         235 G  235 (350)
T ss_pred             C
Confidence            4

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.7e-35  Score=261.07  Aligned_cols=228  Identities=26%  Similarity=0.419  Sum_probs=196.6

Q ss_pred             cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .++++++.++ +.++++++|.|.+.++||+|||.++++|++|+..+.+...    ..+|.++|||++|+|+++|++++.+
T Consensus         2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08277           2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGIVESVGEGVTNL   77 (365)
T ss_pred             ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEEEEeeCCCCccC
Confidence            4678877754 4689999999999999999999999999999998876532    4568999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-------------------CCCCCceeEEEEecCCceEECCCCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-------------------PPTNGSLAHKVVHPAKLCYKLPDNV  153 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~~~~~~~~~ip~~~  153 (249)
                      ++||+|++.+...|++|.+|..+.+.+|.+......                   ....|+|+||+.++.+.++++|+++
T Consensus        78 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          78 KPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence            999999998889999999999999999986432210                   0125899999999999999999999


Q ss_pred             Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++++++. .+.++|+++ +...+++|++++|+|+|++|++++|+++++|+.+|++++++++|++.++++|+++++++.
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~  237 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK  237 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence            999998776 577899876 568899999999999999999999999999997799999999999999999999999876


Q ss_pred             CCcccHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (249)
                      ..+.++.+.+++++
T Consensus       238 ~~~~~~~~~~~~~~  251 (365)
T cd08277         238 DSDKPVSEVIREMT  251 (365)
T ss_pred             cccchHHHHHHHHh
Confidence            54345666666654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.2e-35  Score=260.94  Aligned_cols=214  Identities=26%  Similarity=0.387  Sum_probs=177.2

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++..++ .++++++|.|+|+++||||||+|++||++|...+.|.+.......+|.++|||++|+|+++|++ +.|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            4667776433 4999999999999999999999999999999999876422222346899999999999999999 9999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC  171 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l  171 (249)
                      +||+|+..+...|++|.+|+.+++.+|......  +.....|+|+||+.++.+.++++|++++ +.+++..++.+++.++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~~p~~~~~~a~  158 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAI  158 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cceeecchHHHHHHHH
Confidence            999999988889999999999999999865432  2223579999999999999999999999 5565555666655444


Q ss_pred             HH-------cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCC
Q 025712          172 RR-------ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       172 ~~-------~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ..       .+.++|++|+|+|+|++|++++|++|.+|+ +++++++   +++|+++++++|+++ +++.+
T Consensus       159 ~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~  227 (355)
T cd08230         159 EQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSK  227 (355)
T ss_pred             HHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc
Confidence            21       235789999999999999999999999999 7888877   689999999999987 45554

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-35  Score=257.30  Aligned_cols=223  Identities=31%  Similarity=0.533  Sum_probs=192.5

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++.+++++.|.|.| .++||+|||.++++|++|...+....  .  ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~~~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~--~--~~~p~i~G~e~~G~V~~vG~~v~~~~   76 (347)
T PRK10309          1 MKSVVNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG--A--HYYPITLGHEFSGYVEAVGSGVDDLH   76 (347)
T ss_pred             CceEEEeCCCceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC--C--CCCCcccccceEEEEEEeCCCCCCCC
Confidence            5788888888999999999987 69999999999999999986543211  0  23588999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR  173 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~  173 (249)
                      +||+|++.+...|+.|.+|+.+.+.+|......+. ...|+|++|+.++.+.++++|+++++++++++.++.+++++++.
T Consensus        77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~~~~~~~~~~~  155 (347)
T PRK10309         77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGS-RRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHL  155 (347)
T ss_pred             CCCEEEECCCcCCCCCcchhCcCcccCCCcceecc-CCCCccceeEEeehHHeEECcCCCCHHHhhhhhHHHHHHHHHHh
Confidence            99999999999999999999999999987655443 35799999999999999999999999999877666777888777


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ..++++++++|+|+|++|++++|+|+.+|++.++++++++++.++++++|++++++++.  .+ .+.+.+++
T Consensus       156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~-~~~~~~~~  224 (347)
T PRK10309        156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--MS-APQIQSVL  224 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--cC-HHHHHHHh
Confidence            88899999999999999999999999999966888999999999999999999998765  23 34455544

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=6.2e-35  Score=255.97  Aligned_cols=230  Identities=39%  Similarity=0.638  Sum_probs=200.2

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccc--------cCCCCCceeccceEEEEEEec
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCAN--------FIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~--------~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      |+++++.+++.+++++++.|+|.++||+||+.++++|++|+..+.+.....        .....|.++|+|++|+|+++|
T Consensus         1 mka~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG   80 (351)
T cd08233           1 MKAARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVG   80 (351)
T ss_pred             CceEEEecCCceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeC
Confidence            578888888999999999999999999999999999999987665321100        002368899999999999999


Q ss_pred             CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHH
Q 025712           87 SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV  166 (249)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~  166 (249)
                      ++++.+++||+|+..+...|+.|.+|+.+++.+|......+.....|+|++|+.++...++++|+++++++++++.++.+
T Consensus        81 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~t  160 (351)
T cd08233          81 SGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAV  160 (351)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhccHHHH
Confidence            99999999999999988899999999999999998776544322479999999999999999999999999887767789


Q ss_pred             HHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ||.++...++++|++++|+|+|++|++++|+|+.+|++.++++++++++.++++++|++.++++++  .++.+.+++++.
T Consensus       161 a~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~--~~~~~~l~~~~~  238 (351)
T cd08233         161 AWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE--VDVVAEVRKLTG  238 (351)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc--cCHHHHHHHHhC
Confidence            999997788999999999999999999999999999977899989999999999999999998776  678888877653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.4e-35  Score=257.40  Aligned_cols=223  Identities=25%  Similarity=0.400  Sum_probs=184.9

Q ss_pred             cCccCCcccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEE
Q 025712            6 RDDEGDKNQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE   84 (249)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~   84 (249)
                      .++|..++.++++...+. +.+++.+++.|.|+++||+|||.+++||++|+..+.+.+.   ...+|.++|||++|+|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~   80 (360)
T PLN02586          4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG---FTRYPIVPGHEIVGIVTK   80 (360)
T ss_pred             ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcC---CCCCCccCCcceeEEEEE
Confidence            345556666777777664 6799999999999999999999999999999998876431   135689999999999999


Q ss_pred             ecCCCCCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhh
Q 025712           85 VGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEE  157 (249)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  157 (249)
                      +|+++++|++||+|++.+. ..|++|.+|+.+.+++|....+..      +...+|+|+||+.++.+.++++|+++++++
T Consensus        81 vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~  160 (360)
T PLN02586         81 LGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDA  160 (360)
T ss_pred             ECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHH
Confidence            9999999999999986544 589999999999999998754321      123479999999999999999999999999


Q ss_pred             hcccc-chHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCCCEEecCCC
Q 025712          158 GAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVST  232 (249)
Q Consensus       158 aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga~~vi~~~~  232 (249)
                      ++.+. ...++|+++.. ...++|++|+|.|+|++|++++|+|+.+|+ ++++++.++++ .+.++++|+++++++.+
T Consensus       161 aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~  237 (360)
T PLN02586        161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTD  237 (360)
T ss_pred             hhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCC
Confidence            88766 46678888854 456899999999999999999999999999 67777666555 56668899999998654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=9.6e-35  Score=254.77  Aligned_cols=224  Identities=24%  Similarity=0.434  Sum_probs=191.7

Q ss_pred             EEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712           18 AWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD   96 (249)
Q Consensus        18 ~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (249)
                      .++.+++. +++++.|.|.++++||+|||.++++|++|+..+.+...  ....+|.++|||++|+|+++|++++.+ +||
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd   78 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVR--TNHALPLALGHEISGRVIQAGAGAASW-IGK   78 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCC--ccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence            45666664 89999999999999999999999999999987644321  113568999999999999999999887 999


Q ss_pred             eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCC------CCChhhhcccc-chHHHHH
Q 025712           97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD------NVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------~~~~~~aa~~~-~~~~a~~  169 (249)
                      +|++.+...|++|.+|+.+++++|......|. ...|+|+||+.++.+.++++|+      ++++++++.+. .+.++|+
T Consensus        79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~-~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~  157 (349)
T TIGR03201        79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGN-DMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQ  157 (349)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCccCc-CCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHH
Confidence            99999999999999999999999987655442 3469999999999999999998      78888777554 6788999


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCc-ccHHHHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EMWGRYKMQWVQ  246 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~~~~~~~~~  246 (249)
                      ++....+++|++|+|+|+|++|++++|+|+.+|+ ++++++++++++++++++|+++++++.+.+ +++.+.++++|+
T Consensus       158 a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~  234 (349)
T TIGR03201       158 AAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAK  234 (349)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcc
Confidence            8887889999999999999999999999999999 799999999999999999999999876532 367777776654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1e-34  Score=252.80  Aligned_cols=203  Identities=29%  Similarity=0.440  Sum_probs=180.8

Q ss_pred             CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712           24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG  103 (249)
Q Consensus        24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  103 (249)
                      ..++++++|.|.|+++||+|||.++++|++|+..+.|.+..   ...|.++|||++|+|+++|++++++++||+|++.+.
T Consensus        13 ~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   89 (329)
T TIGR02822        13 GPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV---HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWL   89 (329)
T ss_pred             CCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC---CCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCc
Confidence            46899999999999999999999999999999988775421   234789999999999999999999999999987654


Q ss_pred             -cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCe
Q 025712          104 -ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETN  181 (249)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~  181 (249)
                       ..|+.|.+|+.+++++|......|. ...|+|+||+.++.+.++++|+++++.+++.+. ...+||+++...++++|++
T Consensus        90 ~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~  168 (329)
T TIGR02822        90 RRTCGVCRYCRRGAENLCPASRYTGW-DTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGR  168 (329)
T ss_pred             cCcCCCChHHhCcCcccCCCcccCCc-ccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHhcCCCCCCE
Confidence             4799999999999999998665543 357999999999999999999999998888554 6778999998888999999


Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      |||+|+|++|++++|+|+.+|+ ++++++++++|+++++++|+++++|+.
T Consensus       169 VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~  217 (329)
T TIGR02822       169 LGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY  217 (329)
T ss_pred             EEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence            9999999999999999999999 699999999999999999999999854

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=5e-35  Score=235.72  Aligned_cols=200  Identities=27%  Similarity=0.326  Sum_probs=181.8

Q ss_pred             cccceEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           12 KNQNMAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        12 ~~~~~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ++..+-++++   +++.+++++.|.|+|.++|++||-+|+|+|+.|..+.+|.+.   +.+.|++||.|++|+|+++|++
T Consensus         6 p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~g   82 (336)
T KOG1197|consen    6 PPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGEG   82 (336)
T ss_pred             CchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecCC
Confidence            3445666666   567899999999999999999999999999999999998763   4688999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      ++++++||+|+.+                            +..|.|+|+..+|...++++|+.+++..|+++. -..||
T Consensus        83 vtdrkvGDrVayl----------------------------~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTA  134 (336)
T KOG1197|consen   83 VTDRKVGDRVAYL----------------------------NPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTA  134 (336)
T ss_pred             ccccccccEEEEe----------------------------ccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHH
Confidence            9999999999976                            378999999999999999999999999999766 46788


Q ss_pred             HHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          168 VHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       168 ~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      |..++ ..++++|++||||. +|+||++++|++++.|+ .+|++.++++|++.+++.|++|.|+++.  +|+.+++.++|
T Consensus       135 y~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~--eD~v~~V~kiT  211 (336)
T KOG1197|consen  135 YMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST--EDYVDEVKKIT  211 (336)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc--hhHHHHHHhcc
Confidence            87774 48999999999996 89999999999999999 8999999999999999999999999998  99999999887

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=7.7e-34  Score=250.32  Aligned_cols=233  Identities=74%  Similarity=1.271  Sum_probs=200.9

Q ss_pred             cccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           12 KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      .++++++|+.+++.+++++.+.|.+.++||+||+.++++|++|+.+..+...+......|.++|+|++|+|+++|++++.
T Consensus        15 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   94 (364)
T PLN02702         15 EEENMAAWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH   94 (364)
T ss_pred             ccccceEEEecCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence            36799999999999999999999999999999999999999999887763322222346789999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC  171 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l  171 (249)
                      |++||+|++.+...|++|.+|+.+...+|......+.....|+|++|+.++.+.++++|+++++.++++..++.++++++
T Consensus        95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~~~  174 (364)
T PLN02702         95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHAC  174 (364)
T ss_pred             CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999875444433457999999999999999999999999988655666788877


Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ...++.++++++|+|+|++|++++++++.+|+..++++++++++.++++++|++++++++...+++.+.+.++
T Consensus       175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (364)
T PLN02702        175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEI  247 (364)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHH
Confidence            7788999999999999999999999999999977888888999999999999999988764445677776554

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=9.2e-34  Score=250.71  Aligned_cols=228  Identities=27%  Similarity=0.404  Sum_probs=196.3

Q ss_pred             cceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +++++|+..+ +.+++++.|.|.+.++||+|||.++++|++|+..+.+.+    ...+|+++|||++|+|+++|++++.+
T Consensus         7 ~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~----~~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           7 KCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKL----VTPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             eeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCC----CCCCCccccccceEEEEEeCCCCccC
Confidence            3778887754 579999999999999999999999999999999887754    23568899999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------------------CCCCCceeEEEEecCCceEECCCC
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~~~ip~~  152 (249)
                      ++||+|++.+..+||+|.+|+.++++.|......+.                    ....|+|++|+.++.+.++++|++
T Consensus        83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~  162 (373)
T cd08299          83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA  162 (373)
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence            999999999889999999999999999986543210                    003589999999999999999999


Q ss_pred             CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      +++.+++++. .+.++|+++ ...++++|++++|+|+|++|++++++++..|+..|+++++++++++.++++|++++++.
T Consensus       163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~  242 (373)
T cd08299         163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP  242 (373)
T ss_pred             CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence            9999998777 677888875 66889999999999999999999999999999679999999999999999999999987


Q ss_pred             CCCcccHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWV  245 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~  245 (249)
                      .+..+++.+.+.+++
T Consensus       243 ~~~~~~~~~~v~~~~  257 (373)
T cd08299         243 QDYKKPIQEVLTEMT  257 (373)
T ss_pred             cccchhHHHHHHHHh
Confidence            653344666666554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=6.3e-34  Score=251.79  Aligned_cols=216  Identities=25%  Similarity=0.392  Sum_probs=179.0

Q ss_pred             ccceEEEEe--c-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           13 NQNMAAWLL--G-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        13 ~~~~~~~~~--~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      .+++++.+.  + ++.+.+.+++.|.|+++||+|||.++++|++|+.++.|.+.   ....|.++|||++|+|+++|+++
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~---~~~~p~i~GhE~aG~Vv~vG~~v   79 (375)
T PLN02178          3 DQNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWG---FSRYPIIPGHEIVGIATKVGKNV   79 (375)
T ss_pred             ccceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCC---CCCCCcccCceeeEEEEEECCCC
Confidence            455554433  3 46789999999999999999999999999999998876531   12468899999999999999999


Q ss_pred             CCCCCCCeEEEccCc-CCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc
Q 025712           90 KSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE  162 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~  162 (249)
                      ++|++||+|++.+.. .|++|.+|+.+++++|.+.....      +....|+|+||+.++.+.++++|+++++++++.+.
T Consensus        80 ~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~  159 (375)
T PLN02178         80 TKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLL  159 (375)
T ss_pred             CccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhh
Confidence            999999999866554 69999999999999999764321      11236999999999999999999999999988666


Q ss_pred             -chHHHHHHHHHcC--CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh-HHHHHHHcCCCEEecCCC
Q 025712          163 -PLSVGVHACRRAN--VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-RLSIARNLGADETAKVST  232 (249)
Q Consensus       163 -~~~~a~~~l~~~~--~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~~~~~~~ga~~vi~~~~  232 (249)
                       ...++|+++....  .++|++++|.|+|++|++++|+|+++|+ ++++++.+++ +.++++++|+++++++.+
T Consensus       160 ~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~  232 (375)
T PLN02178        160 CAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTD  232 (375)
T ss_pred             ccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcC
Confidence             4667888886543  3689999999999999999999999999 6888776654 478889999999998653

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=5.1e-34  Score=249.51  Aligned_cols=206  Identities=25%  Similarity=0.309  Sum_probs=171.1

Q ss_pred             cceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc-CCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF-IVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .++++++++|++++++|.|.|. +++||||||++++||++|+.+++|.+.... ...+|.++|||++|+|+++|.+  .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~   78 (341)
T cd08237           2 INQVYRLVRPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY   78 (341)
T ss_pred             cccceEEeccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence            4688999999999999999995 999999999999999999999887542211 1357999999999999998864  69


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR  172 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~  172 (249)
                      ++||+|.+.+...|+ |.+|.  ..++|....+.+. ...|+|+||+.++.++++++|+++++++|+++.+++++++++.
T Consensus        79 ~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~  154 (341)
T cd08237          79 KVGTKVVMVPNTPVE-KDEII--PENYLPSSRFRSS-GYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAIS  154 (341)
T ss_pred             CCCCEEEECCCCCch-hcccc--hhccCCCcceeEe-cCCCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHH
Confidence            999999998877777 44564  3455765544432 3469999999999999999999999999988888899998884


Q ss_pred             H---cCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          173 R---ANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       173 ~---~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .   ...++|++|+|.|+|++|++++|+++. +|..+|++++.+++|+++++++++++
T Consensus       155 ~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~  212 (341)
T cd08237         155 RFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY  212 (341)
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee
Confidence            3   456899999999999999999999986 66657999999999999988766543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.4e-33  Score=244.57  Aligned_cols=221  Identities=31%  Similarity=0.569  Sum_probs=194.0

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      ||++++.+++.+++++++.|.|+++|++||+.++++|++|+..+.+.+..   ..+|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~   77 (339)
T PRK10083          1 MKSIVIEKPNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF---AKYPRVIGHEFFGVIDAVGEGVDAARI   77 (339)
T ss_pred             CeEEEEecCCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc---CCCCcccccceEEEEEEECCCCccCCC
Confidence            57888889999999999999999999999999999999999888765321   246889999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ||+|++.+...|+.|.+|..+++.+|..+...+. ..+|+|++|+.++...++++|+++++.++++..++.+++.+++..
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~~~  156 (339)
T PRK10083         78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGV-HRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRT  156 (339)
T ss_pred             CCEEEEccccCCCCCccccCcCcccCCCCceEEE-ccCCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHHhc
Confidence            9999999999999999999999999987654332 246999999999999999999999998887666777888766778


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK  241 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~  241 (249)
                      ++++|++|+|+|+|++|++++|+++. +|+..+++++++++|.++++++|+++++++++  +++.+.+
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~  222 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEAL  222 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHH
Confidence            89999999999999999999999996 69977888999999999999999999998765  4555544

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=6.8e-33  Score=243.91  Aligned_cols=227  Identities=35%  Similarity=0.556  Sum_probs=194.0

Q ss_pred             eEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC---
Q 025712           16 MAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS---   91 (249)
Q Consensus        16 ~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~---   91 (249)
                      |++++.+++ .+++++.+.|.|+++||+|||.++++|++|+....|.+..   ..+|.++|+|++|+|+++|++++.   
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~   78 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR---VPLPIILGHEGVGRVVALGGGVTTDVA   78 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC---CCCCcccccCCceEEEEeCCCcccccc
Confidence            677888776 8999999999999999999999999999999888765421   357889999999999999999986   


Q ss_pred             ---CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC------CCCCceeEEEEecCC-ceEECCCCCChhhhccc
Q 025712           92 ---LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------PTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMC  161 (249)
Q Consensus        92 ---~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~~  161 (249)
                         +++||+|++.+...|++|.+|+.+.+++|......+..      ...|+|++|+.++.+ .++++|++++..+++++
T Consensus        79 ~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~  158 (361)
T cd08231          79 GEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA  158 (361)
T ss_pred             CCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence               99999999998899999999999999999876554421      246999999999986 79999999998888877


Q ss_pred             -cchHHHHHHHHHc-CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCc-ccHH
Q 025712          162 -EPLSVGVHACRRA-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EMWG  238 (249)
Q Consensus       162 -~~~~~a~~~l~~~-~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~  238 (249)
                       ..+.+||+++... ..++++++||+|+|++|++++++|+.+|++.++++++++++.++++++|++++++++... .++.
T Consensus       159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~  238 (361)
T cd08231         159 NCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRR  238 (361)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHH
Confidence             4688999998664 445999999999999999999999999997788898999999999999999999877532 2344


Q ss_pred             HHHHHHH
Q 025712          239 RYKMQWV  245 (249)
Q Consensus       239 ~~~~~~~  245 (249)
                      +.+.+++
T Consensus       239 ~~i~~~~  245 (361)
T cd08231         239 AIVRDIT  245 (361)
T ss_pred             HHHHHHh
Confidence            5566654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-32  Score=241.16  Aligned_cols=229  Identities=30%  Similarity=0.547  Sum_probs=197.8

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc--c----cCCCCCceeccceEEEEEEecCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA--N----FIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~--~----~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ||++++++|+.+++++.+.|++.+++|+||+.++++|+.|+....+....  .    .....|.++|+|++|+|+++|++
T Consensus         1 mka~~~~~~~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~   80 (350)
T cd08256           1 MRAVVCHGPQDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEG   80 (350)
T ss_pred             CeeEEEecCCceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCC
Confidence            57888998999999999999999999999999999999999887764210  0    00246778999999999999999


Q ss_pred             CC--CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC-CCCCCceeEEEEecCC-ceEECCCCCChhhhccccch
Q 025712           89 VK--SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS-PPTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMCEPL  164 (249)
Q Consensus        89 v~--~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~~~~~  164 (249)
                      ++  .+++||+|++.+...|++|.+|+.++...|....+.+. ....|+|++|+.++.+ .++++|+++++++++.+.++
T Consensus        81 v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~  160 (350)
T cd08256          81 AEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPL  160 (350)
T ss_pred             cccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhhhHH
Confidence            99  89999999999999999999999999999986554332 1256999999999987 57899999999988876778


Q ss_pred             HHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          165 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       165 ~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      .++|.+++..++.++++++|.|+|++|++++++|+++|+..++++++++++.++++++|++++++++.  .++.+.+.++
T Consensus       161 ~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~  238 (350)
T cd08256         161 ACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPE--VDVVEKIKEL  238 (350)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC--cCHHHHHHHH
Confidence            89998887788999999999889999999999999999877888999999999999999999988764  6777777766


Q ss_pred             H
Q 025712          245 V  245 (249)
Q Consensus       245 ~  245 (249)
                      +
T Consensus       239 ~  239 (350)
T cd08256         239 T  239 (350)
T ss_pred             h
Confidence            5

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.7e-32  Score=240.53  Aligned_cols=226  Identities=29%  Similarity=0.366  Sum_probs=196.1

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.+++.+++++.+.|.+.++||+|||+++++|++|+..+.+.+..   ...|.++|+|++|+|+++|++++++++
T Consensus         1 mka~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~---~~~~~~~G~e~~G~V~~vG~~v~~~~~   77 (351)
T cd08285           1 MKAFAMLGIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG---ERHGMILGHEAVGVVEEVGSEVKDFKP   77 (351)
T ss_pred             CceEEEccCCccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC---CCCCcccCcceEEEEEEecCCcCccCC
Confidence            67888999888999999999999999999999999999999877765321   356889999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCcc--ccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHH
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMR--FFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      ||+|++.+...|++|..|..+....|.+..  +..+....|+|++|+.++..  .++++|+++++.+++.+. .+.++++
T Consensus        78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~  157 (351)
T cd08285          78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFH  157 (351)
T ss_pred             CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHH
Confidence            999999888899999999999999997631  11112346999999999974  899999999999988765 6788898


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++...+++++++||+|+|++|++++|+|+.+|+..++++++++++.++++++|++++++++.  .++.+.+.+++
T Consensus       158 ~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~  231 (351)
T cd08285         158 GAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN--GDVVEQILKLT  231 (351)
T ss_pred             HHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC--CCHHHHHHHHh
Confidence            887788999999999999999999999999999977999999999999999999999998775  56777776654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=2.7e-32  Score=238.57  Aligned_cols=227  Identities=54%  Similarity=0.964  Sum_probs=194.9

Q ss_pred             EEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712           17 AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD   96 (249)
Q Consensus        17 ~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (249)
                      +.++.++..+++++.+.|.+.++||+|||.++++|+.|+..+.+...+......|.++|+|++|+|+++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   80 (343)
T cd05285           1 AAVLHGPGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGD   80 (343)
T ss_pred             CceEecCCceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCC
Confidence            35788889999999999999999999999999999999876643222222234577899999999999999999999999


Q ss_pred             eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCC
Q 025712           97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV  176 (249)
Q Consensus        97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~  176 (249)
                      +|++.+...|++|.+|..+++.+|.+....+.....|+|++|+.++.+.++++|+++++.+++.+.++.+|++++..+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~~~~~~~  160 (343)
T cd05285          81 RVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGV  160 (343)
T ss_pred             EEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhhhHHHHHHHHHHhcCC
Confidence            99998889999999999999999987644333335799999999999999999999999998876677888888878899


Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCccc---HHHHHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM---WGRYKMQWV  245 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~  245 (249)
                      ++|++++|+|+|++|++++|+|+.+|+..++++++++++.++++++|+++++++++  ++   |.+++.+++
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~~~~~~  230 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT--EDTPESAEKIAELL  230 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc--ccchhHHHHHHHHh
Confidence            99999999988999999999999999955888988999999999999999998775  34   466666654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.3e-31  Score=236.34  Aligned_cols=226  Identities=27%  Similarity=0.428  Sum_probs=193.8

Q ss_pred             eEEEEec-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           16 MAAWLLG-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        16 ~~~~~~~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      +++++.. .+.+++++.+.|.++++||+||+.++++|+.|+..+.+.+    ....|.++|+|++|+|+++|++++.+++
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~----~~~~~~i~g~e~~G~V~~vG~~v~~~~~   77 (365)
T cd05279           2 KAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL----PTPLPVILGHEGAGIVESIGPGVTTLKP   77 (365)
T ss_pred             ceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCC----CCCCCcccccceeEEEEEeCCCcccCCC
Confidence            5677775 4589999999999999999999999999999998887643    2356789999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCC--------------------CCCceeEEEEecCCceEECCCCCC
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP--------------------TNGSLAHKVVHPAKLCYKLPDNVS  154 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~~~~~~~~ip~~~~  154 (249)
                      ||+|++.+...|++|.+|+.+++++|......+...                    ..|+|++|+.++.+.++++|++++
T Consensus        78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~  157 (365)
T cd05279          78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP  157 (365)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence            999999988899999999999999997654332100                    247999999999999999999999


Q ss_pred             hhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          155 LEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       155 ~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +++++.+. .+.++|+++ +..++++|+++||+|+|++|++++++|+.+|+..++++++++++.++++++|++++++.++
T Consensus       158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~  237 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD  237 (365)
T ss_pred             HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccc
Confidence            99988776 677888876 5678999999999999999999999999999966888888999999999999999998776


Q ss_pred             CcccHHHHHHHHH
Q 025712          233 DIEMWGRYKMQWV  245 (249)
Q Consensus       233 ~~~~~~~~~~~~~  245 (249)
                      .+.++.+.+++++
T Consensus       238 ~~~~~~~~l~~~~  250 (365)
T cd05279         238 QDKPIVEVLTEMT  250 (365)
T ss_pred             ccchHHHHHHHHh
Confidence            3336777776654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.2e-31  Score=233.50  Aligned_cols=223  Identities=26%  Similarity=0.421  Sum_probs=192.5

Q ss_pred             ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.++ +.++++++|.|.++++||+||+.++++|+.|...+.+....   ...|.++|+|++|+|+++|+++++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~~vG~~v~~~~   77 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG---LSYPRVPGHEVVGRIDAVGEGVSRWK   77 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC---CCCCcccCcceeEEEEEECCCCccCC
Confidence            578888888 68999999999999999999999999999999888764321   24588999999999999999999999


Q ss_pred             CCCeEEEcc-CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           94 VGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        94 ~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      +||+|++.+ ...|++|.+|..++++.|......+ ....|+|++|+.++...++++|+++++.+++.+. .+.++|+++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~-~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~  156 (333)
T cd08296          78 VGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTG-VTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL  156 (333)
T ss_pred             CCCEEEeccccCCCCCChhhhCcCcccCCCCCccC-cccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence            999998754 3689999999999999998654332 2346999999999999999999999998888655 577888888


Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ....+.++++++|+|+|++|++++++|+.+|+ .++++++++++.+.++++|+++++++..  +++.+.++++
T Consensus       157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~  226 (333)
T cd08296         157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK--EDVAEALQEL  226 (333)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC--ccHHHHHHhc
Confidence            77788999999999999999999999999999 7899989999999999999999998765  5566665543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=1.7e-31  Score=235.64  Aligned_cols=226  Identities=29%  Similarity=0.403  Sum_probs=192.9

Q ss_pred             ccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++|+++++.++ +.+++++.+.|.+.++||+|||.++++|++|+....+.+.    ...|.++|+|++|+|+++|+++..
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v~~   76 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP----TPLPAVLGHEGAGVVEAVGSAVTG   76 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC----CCCCcccccceeEEEEEeCCCccc
Confidence            46889998875 5789999999999999999999999999999988876432    356889999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-------------------CCCCCceeEEEEecCCceEEC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-------------------PPTNGSLAHKVVHPAKLCYKL  149 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~g~~~~~~~~~~~~~~~i  149 (249)
                      +++||+|++.+. .|++|.+|+.+..++|......   +.                   ....|+|++|+.++.+.++++
T Consensus        77 ~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~i  155 (365)
T cd08278          77 LKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKV  155 (365)
T ss_pred             CCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEEC
Confidence            999999998764 7999999999999999754321   00                   112589999999999999999


Q ss_pred             CCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          150 PDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       150 p~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      |+++++++++.+. .+.+|+.++ +...++++++++|+|+|++|++++|+|++.|+..+++++++++|.++++++|++++
T Consensus       156 P~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~  235 (365)
T cd08278         156 DKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHV  235 (365)
T ss_pred             CCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEE
Confidence            9999998887665 466778776 55788999999999999999999999999999779999999999999999999999


Q ss_pred             ecCCCCcccHHHHHHHHH
Q 025712          228 AKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       228 i~~~~~~~~~~~~~~~~~  245 (249)
                      ++++.  +++.+.+.+++
T Consensus       236 i~~~~--~~~~~~v~~~~  251 (365)
T cd08278         236 INPKE--EDLVAAIREIT  251 (365)
T ss_pred             ecCCC--cCHHHHHHHHh
Confidence            98765  56777776654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.8e-31  Score=232.73  Aligned_cols=226  Identities=32%  Similarity=0.526  Sum_probs=197.6

Q ss_pred             ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++..+ ..+++++.+.|.+.+++|+||+.++++|+.|+....+.+....+..+|.++|+|++|+|+++|+++..++
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            467777766 5789999999999999999999999999999988877553323456789999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      +||+|++.+...|+.|..|..+...+|....+.+. ...|+|++|+.++.+.++++|+++++++++.+. .+.+||+++.
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~  159 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGI-GTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK  159 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCc-cCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence            99999999888999999999999999998777765 568999999999999999999999999988766 5789999885


Q ss_pred             H--cCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          173 R--ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       173 ~--~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .  ..+.+++++||+|+|++|++++++|+..| . .++++++++++.+.++++|++++++++.  . +.+++++++
T Consensus       160 ~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~i~~~~  231 (340)
T cd05284         160 KALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD--D-VVEEVRELT  231 (340)
T ss_pred             HhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc--c-HHHHHHHHh
Confidence            4  36888999999998889999999999999 6 7888888999999999999999998765  4 777777654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.9e-31  Score=233.09  Aligned_cols=226  Identities=32%  Similarity=0.517  Sum_probs=196.0

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.+++.+.+.+.|.|.| .++||+|||.++++|+.|+..+.+.+..   ...|.++|+|++|+|+++|++++.++
T Consensus         1 ~ka~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (347)
T cd05278           1 MKALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG---AKHGMILGHEFVGEVVEVGSDVKRLK   77 (347)
T ss_pred             CceEEEecCCceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC---CCCCceeccceEEEEEEECCCccccC
Confidence            4678888889999999999999 9999999999999999999888775432   35588999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGV  168 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~  168 (249)
                      +||+|++.+...||.|.+|..+...+|......  .+....|+|++|+.++.+  .++++|+++++++++.+. .+.+||
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~  157 (347)
T cd05278          78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF  157 (347)
T ss_pred             CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhee
Confidence            999999999999999999999999999764322  122346999999999987  899999999999988766 588899


Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++...++++++++||.|+|++|++++|+|+.+|+..++++++++++.++++++|+++++++++  .++.+.+++++
T Consensus       158 ~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~i~~~~  232 (347)
T cd05278         158 HGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN--GDIVEQILELT  232 (347)
T ss_pred             ehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc--chHHHHHHHHc
Confidence            8887788999999999888999999999999999757888888999999999999999998776  56777776654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.1e-31  Score=236.14  Aligned_cols=215  Identities=27%  Similarity=0.385  Sum_probs=179.6

Q ss_pred             cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .+++++..+|. .+.+++++.|+|+++||+|||.++++|++|+..+.+.+.   ...+|.++|||++|+|+++|++++.|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~Vv~vG~~v~~~   85 (357)
T PLN02514          9 KTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLG---MSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_pred             eEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcC---cCCCCccCCceeeEEEEEECCCcccc
Confidence            36777788775 699999999999999999999999999999998876431   12468899999999999999999999


Q ss_pred             CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-ch
Q 025712           93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PL  164 (249)
Q Consensus        93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~  164 (249)
                      ++||+|++.+. ..|++|.+|+.+++.+|.+..+..      +....|+|+||+.++...++++|+++++++++.+. .+
T Consensus        86 ~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~  165 (357)
T PLN02514         86 TVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAG  165 (357)
T ss_pred             cCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhH
Confidence            99999986544 379999999999999998753321      11246999999999999999999999999988666 46


Q ss_pred             HHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCCCEEecCCC
Q 025712          165 SVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADETAKVST  232 (249)
Q Consensus       165 ~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga~~vi~~~~  232 (249)
                      .+||+++.. ...++|++++|+|+|++|++++|+||++|+ .++++++++++.+. ++++|++++++..+
T Consensus       166 ~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~  234 (357)
T PLN02514        166 VTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD  234 (357)
T ss_pred             HHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence            788988865 445799999999999999999999999999 67777777766654 46799998887543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=3.1e-31  Score=235.55  Aligned_cols=226  Identities=33%  Similarity=0.501  Sum_probs=194.5

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.+++.+++++.+.|.| .+++|+||+.++++|++|...+.|.+..   ..+|.++|+|++|+|+++|++++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~   77 (386)
T cd08283           1 MKALVWHGKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEVRNLK   77 (386)
T ss_pred             CeeEEEecCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCCCCCC
Confidence            5778888899999999999988 4999999999999999999988775422   34688999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccC------------C-------CCCCCceeEEEEecCC--ceEECCCC
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG------------S-------PPTNGSLAHKVVHPAK--LCYKLPDN  152 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~~~~g~~~~~~~~~~~--~~~~ip~~  152 (249)
                      +||+|++.+...||+|.+|+.+.+++|.......            .       ....|+|++|+.++.+  .++++|++
T Consensus        78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~  157 (386)
T cd08283          78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDD  157 (386)
T ss_pred             CCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCC
Confidence            9999999888899999999999999998643211            0       0136999999999987  89999999


Q ss_pred             CChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          153 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++++++.+. ...+||++++...+.++++|+|+|+|++|++++++|++.|+..++++++++++.+++++++...++++.
T Consensus       158 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~  237 (386)
T cd08283         158 LSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFE  237 (386)
T ss_pred             CCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCC
Confidence            9999988765 678999998778899999999999999999999999999986699999999999999998545677766


Q ss_pred             CCcc-cHHHHHHHHH
Q 025712          232 TDIE-MWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~-~~~~~~~~~~  245 (249)
                      .  . ++.+.+++++
T Consensus       238 ~--~~~~~~~l~~~~  250 (386)
T cd08283         238 E--VDDVVEALRELT  250 (386)
T ss_pred             c--chHHHHHHHHHc
Confidence            5  4 4777777664

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=2.5e-31  Score=232.13  Aligned_cols=227  Identities=35%  Similarity=0.573  Sum_probs=190.3

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.++. .+++.+.|.|.|.++||+||++++++|++|+.++.+..........|.++|+|++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            4667777654 699999999999999999999999999999987665322111235678999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR  173 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~  173 (249)
                      +||+|++.+...|++|.+|+.+.+++|.+.+..+ ...+|+|++|+.++.+.++++|+++++.+++.+.++.+++.+...
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~~~~~~~~~~~  159 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVG-VNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS  159 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcceee-ecCCCcceeeEEechHHeEECcCCCCHHHhHhhhHHHHHHHHHHc
Confidence            9999999988899999999999999998743332 335799999999999999999999999888866666666655433


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                       ...+|++++|+|+|++|++++|+++..|++.++++++++++.++++++|+++++++++  .++.+.+++++
T Consensus       160 -~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~~~~  228 (341)
T PRK05396        160 -FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK--EDLRDVMAELG  228 (341)
T ss_pred             -CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHHHhc
Confidence             3468999999989999999999999999966888888999999999999999998775  66777776654

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=3.3e-31  Score=237.12  Aligned_cols=221  Identities=25%  Similarity=0.398  Sum_probs=177.5

Q ss_pred             ccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHh-ccccccc---CCCCCceeccceEEEEEEecCC
Q 025712           13 NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFK-TMRCANF---IVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~-~~~~~~~---~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      +.|+++++.+++.++++++|.|.|+++||+|||.++++|++|+..+. +......   ....|.++|||++|+|+++|++
T Consensus         1 m~~~a~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~   80 (410)
T cd08238           1 MKTKAWRMYGKGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKK   80 (410)
T ss_pred             CCcEEEEEEcCCceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCC
Confidence            35788889999999999999999999999999999999999998763 4311110   1246889999999999999999


Q ss_pred             CC-CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC----ceEECCCCCChhhhccccc
Q 025712           89 VK-SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCEP  163 (249)
Q Consensus        89 v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~aa~~~~  163 (249)
                      ++ .|++||+|++.+...|+.|.+|..        .   + ...+|+|+||+.++.+    .++++|+++++++++++.+
T Consensus        81 v~~~~~vGdrV~~~~~~~c~~~~~c~~--------~---g-~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~ep  148 (410)
T cd08238          81 WQGKYKPGQRFVIQPALILPDGPSCPG--------Y---S-YTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEP  148 (410)
T ss_pred             ccCCCCCCCEEEEcCCcCCCCCCCCCC--------c---c-ccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcch
Confidence            98 599999999988888888877621        1   1 1257999999999987    6899999999999987655


Q ss_pred             hHHH---HHHH---------HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcC--CCeEEEEeCChhHHHHHHHc------
Q 025712          164 LSVG---VHAC---------RRANVGPETNVMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARNL------  222 (249)
Q Consensus       164 ~~~a---~~~l---------~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~~------  222 (249)
                      ++++   +.++         ++.++++|++|+|+| +|++|++++|+|+++|  +.+|++++.+++|++.++++      
T Consensus       149 l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~  228 (410)
T cd08238         149 LSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA  228 (410)
T ss_pred             HHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc
Confidence            5443   3222         346789999999997 7999999999999975  45799999999999999997      


Q ss_pred             --CCC-EEecCCCCcccHHHHHHHHHH
Q 025712          223 --GAD-ETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       223 --ga~-~vi~~~~~~~~~~~~~~~~~~  246 (249)
                        |++ +++++++ .+++.+.++++++
T Consensus       229 ~~Ga~~~~i~~~~-~~~~~~~v~~~t~  254 (410)
T cd08238         229 SRGIELLYVNPAT-IDDLHATLMELTG  254 (410)
T ss_pred             ccCceEEEECCCc-cccHHHHHHHHhC
Confidence              776 5676543 2467777777664

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=8.8e-31  Score=233.11  Aligned_cols=220  Identities=25%  Similarity=0.302  Sum_probs=187.0

Q ss_pred             cccceEEEEec-----C-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc------CC-CCCceeccce
Q 025712           12 KNQNMAAWLLG-----I-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF------IV-KKPMVIGHEC   78 (249)
Q Consensus        12 ~~~~~~~~~~~-----~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~------~~-~~p~~~G~e~   78 (249)
                      +.+|+++++..     + ..++++++|.|.++++||+|||.++++|++|+....+......      .. ..+.++|||+
T Consensus        10 ~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~   89 (393)
T cd08246          10 PEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDA   89 (393)
T ss_pred             chhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccce
Confidence            45577777652     2 2589999999999999999999999999999887765421100      01 1235899999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhh
Q 025712           79 AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG  158 (249)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  158 (249)
                      +|+|+++|++++.+++||+|++.+...|++|..|..+.+++|....+.|.....|+|++|+.++...++++|++++++++
T Consensus        90 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~a  169 (393)
T cd08246          90 SGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEA  169 (393)
T ss_pred             EEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHH
Confidence            99999999999999999999999889999999999999999988777776556799999999999999999999999998


Q ss_pred             cccc-chHHHHHHHHH---cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          159 AMCE-PLSVGVHACRR---ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       159 a~~~-~~~~a~~~l~~---~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.+. .+.+||+++..   ++++++++++|+| +|++|++++++++.+|+ .++++++++++.++++++|++++++++.
T Consensus       170 a~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~  247 (393)
T cd08246         170 AAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRD  247 (393)
T ss_pred             hhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence            8554 68899988743   5789999999998 59999999999999999 6777888999999999999999998754

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.6e-31  Score=233.35  Aligned_cols=227  Identities=31%  Similarity=0.579  Sum_probs=190.4

Q ss_pred             EEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc----ccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           18 AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA----NFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        18 ~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~----~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      .++.+ ..+++++.|.|.++++||+||+.++++|++|+..+.+...+    .....+|.++|+|++|+|+++|+++..++
T Consensus        32 ~~~~~-~~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~  110 (384)
T cd08265          32 KVWRY-PELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFE  110 (384)
T ss_pred             EEEeC-CCEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCC
Confidence            33444 47999999999999999999999999999998877632111    01135688999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC-------CChhhhccccchHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN-------VSLEEGAMCEPLSV  166 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~-------~~~~~aa~~~~~~~  166 (249)
                      +||+|++.+...|+.|..|+.+.+.+|..+...+. ...|+|++|+.++.+.++++|++       +++..+++..++.+
T Consensus       111 ~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~t  189 (384)
T cd08265         111 KGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGF-SADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSV  189 (384)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcceeee-cCCCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHH
Confidence            99999999999999999999999999997665443 24799999999999999999986       45666666667889


Q ss_pred             HHHHH-HH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCC-cccHHHHHHH
Q 025712          167 GVHAC-RR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEMWGRYKMQ  243 (249)
Q Consensus       167 a~~~l-~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~-~~~~~~~~~~  243 (249)
                      +|+++ .. .++++|++|+|+|+|++|++++++|+.+|+..++++++++++.++++++|++++++++.. ..++.+.+++
T Consensus       190 a~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~  269 (384)
T cd08265         190 AYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVME  269 (384)
T ss_pred             HHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHH
Confidence            99888 33 688999999999999999999999999999779999889999999999999999987753 2377777777


Q ss_pred             HHH
Q 025712          244 WVQ  246 (249)
Q Consensus       244 ~~~  246 (249)
                      ++.
T Consensus       270 ~~~  272 (384)
T cd08265         270 VTK  272 (384)
T ss_pred             hcC
Confidence            653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.3e-30  Score=230.68  Aligned_cols=224  Identities=32%  Similarity=0.483  Sum_probs=189.5

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.+++.++++++|.|.+ +++||+|||+++++|+.|+....+.+.    ...|.++|||++|+|+++|+++..++
T Consensus         1 m~~~~~~~~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v~~~~   76 (375)
T cd08282           1 MKAVVYGGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAVESLK   76 (375)
T ss_pred             CceEEEecCCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCCCcCC
Confidence            4677788888999999999986 899999999999999999988876542    34688999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccc---------cCCCCCCCceeEEEEecCC--ceEECCCCCChhh---hc
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRF---------FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEE---GA  159 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~---aa  159 (249)
                      +||+|++.+...|+.|.+|..++..+|....+         .+.....|+|++|+.++.+  .++++|+++++.+   ++
T Consensus        77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a  156 (375)
T cd08282          77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYL  156 (375)
T ss_pred             CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhee
Confidence            99999998888999999999999888865321         1112246999999999976  8999999999884   44


Q ss_pred             cc-cchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712          160 MC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG  238 (249)
Q Consensus       160 ~~-~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~  238 (249)
                      .+ ..+.++|+++..+.+.+|++|+|+|.|++|++++|++++.|+..+++++++++|.++++++|+ ..+++++  +++.
T Consensus       157 ~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~--~~~~  233 (375)
T cd08282         157 MLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSD--GDPV  233 (375)
T ss_pred             eecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccCc--ccHH
Confidence            44 467899999877889999999999999999999999999998678889999999999999998 4566654  6777


Q ss_pred             HHHHHHH
Q 025712          239 RYKMQWV  245 (249)
Q Consensus       239 ~~~~~~~  245 (249)
                      +.+.+++
T Consensus       234 ~~i~~~~  240 (375)
T cd08282         234 EQILGLE  240 (375)
T ss_pred             HHHHHhh
Confidence            7777654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.7e-30  Score=227.18  Aligned_cols=226  Identities=32%  Similarity=0.523  Sum_probs=193.8

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.+++.+++++.+.|+| .++||+||+.++++|+.|+..+.+.+..   ...|.++|+|++|+|+++|++++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~   77 (345)
T cd08286           1 MKALVYHGPGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAVTNFK   77 (345)
T ss_pred             CceEEEecCCceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCccccC
Confidence            5678888888999999999986 8999999999999999999988775422   23478999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +||+|++.+...|+.|.+|..++...|..-.+..+....|+|++|+.++.+  .++++|++++..+++.+. .+.+||.+
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  157 (345)
T cd08286          78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYEC  157 (345)
T ss_pred             CCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHH
Confidence            999999998889999999999988888765554333456999999999987  899999999998888665 56788876


Q ss_pred             H-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + ...++.+++++||+|+|++|++++|+++.+|...++++++++++.++++++|++++++++.  .++.+.+.+++
T Consensus       158 ~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~  231 (345)
T cd08286         158 GVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVLELT  231 (345)
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc--ccHHHHHHHHh
Confidence            5 5678899999999999999999999999999447888988999999999999999998775  56766666654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.98  E-value=1e-30  Score=227.99  Aligned_cols=214  Identities=40%  Similarity=0.729  Sum_probs=184.1

Q ss_pred             EEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeE
Q 025712           19 WLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRV   98 (249)
Q Consensus        19 ~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V   98 (249)
                      |+.+++.+++++.+.|.++++||+|||.++++|++|+..+.....+.....+|.++|+|++|+|+++|++++++++||+|
T Consensus         2 ~~~~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V   81 (339)
T cd08232           2 VIHAAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRV   81 (339)
T ss_pred             eeccCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEE
Confidence            67788999999999999999999999999999999987663221111223467899999999999999999999999999


Q ss_pred             EEccCcCCCCCccccCCCCCCCcCccccCCC----CCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           99 ALEPGISCGHCSLCKAGSYNLCPEMRFFGSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ++.+...|++|.+|..|...+|.++...+..    ...|+|++|+.++.+.++++|+++++++|+...++.++|+++...
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~  161 (339)
T cd08232          82 AVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRA  161 (339)
T ss_pred             EEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhhcchHHHHHHHHHhc
Confidence            9998899999999999999999986444321    246999999999999999999999999988766777888888664


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ...++++|||.|+|++|++++|+++.+|+..++++++++++.++++++|++++++++.
T Consensus       162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~  219 (339)
T cd08232         162 GDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR  219 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc
Confidence            4449999999988999999999999999967889988999999999999999998764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.98  E-value=2e-30  Score=226.66  Aligned_cols=224  Identities=31%  Similarity=0.508  Sum_probs=190.3

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.+++.+++++.|.|.| +++||+||+.++++|++|+....+.+.    ...|.++|||++|+|+++|+++..++
T Consensus         1 m~~~~~~~~~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~   76 (345)
T cd08287           1 MRATVIHGPGDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP----TRAPAPIGHEFVGVVEEVGSEVTSVK   76 (345)
T ss_pred             CceeEEecCCceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC----CCCCcccccceEEEEEEeCCCCCccC
Confidence            5788888888999999999986 999999999999999999887766432    24578999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcc------ccchH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAM------CEPLS  165 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~------~~~~~  165 (249)
                      +||+|++.+..+|++|.+|..++..+|......+ ....|+|++|+.++.+  .++++|+++++..+.+      ...+.
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~  155 (345)
T cd08287          77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWG-AFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMG  155 (345)
T ss_pred             CCCEEEeccccCCCCChhhhCcCcccCCCCCccc-CCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHH
Confidence            9999998556789999999999999998754443 3467999999999875  9999999988732221      13567


Q ss_pred             HHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          166 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       166 ~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|++++...++.++++++|+|+|++|++++|+|+..|+..++++++++++.++++++|++++++++.  +++.+.+.+++
T Consensus       156 ~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~--~~~~~~i~~~~  233 (345)
T cd08287         156 TGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG--EEAVARVRELT  233 (345)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc--ccHHHHHHHhc
Confidence            7888887788999999999999999999999999999966899988999999999999999998875  56777776654

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.98  E-value=1.8e-30  Score=226.75  Aligned_cols=225  Identities=33%  Similarity=0.549  Sum_probs=192.1

Q ss_pred             ceEEEEecCCCeEEEEecCCCCC-CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLG-PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.++..+++++++.|.|. ++||+||+.++++|+.|.....+.+.    ...|.++|+|++|+|+++|++++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~   76 (344)
T cd08284           1 MKAVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP----STPGFVLGHEFVGEVVEVGPEVRTLK   76 (344)
T ss_pred             CeeEEEecCCCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCCcccccceEEEEEeeCCCccccC
Confidence            46788888889999999999885 99999999999999999988766432    34578999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      +||+|++.+..+|+.|.+|..+....|......   +....+|+|++|+.++.+  .++++|+++++++++.+. .+.+|
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta  156 (344)
T cd08284          77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTG  156 (344)
T ss_pred             CCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHH
Confidence            999999988889999999999999999765444   222347999999999865  999999999998888655 68899


Q ss_pred             HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      |++++..+..++++|+|+|+|++|++++++++.+|+.+++++++++++.++++++|++ .++++.  .++.+.+.++++
T Consensus       157 ~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~--~~~~~~l~~~~~  232 (344)
T cd08284         157 YFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED--AEPVERVREATE  232 (344)
T ss_pred             HhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC--cCHHHHHHHHhC
Confidence            9998778889999999999999999999999999975788888899999999999986 455554  567777776553

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=2.5e-30  Score=225.38  Aligned_cols=223  Identities=39%  Similarity=0.662  Sum_probs=192.9

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++..++.+++.+++.|.++++||+|||.++++|+.|+....+.+..   ..+|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~   77 (337)
T cd08261           1 MKALVCEKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVAGLKV   77 (337)
T ss_pred             CeEEEEeCCCceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCCCCCC
Confidence            46777888889999999999999999999999999999999887765321   244778999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ||+|++.+...|++|..|+.++..+|......+ ....|+|++|+.++.+ ++++|+++++++++++..+.+++++++..
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~~~a~~~~~~~  155 (337)
T cd08261          78 GDRVVVDPYISCGECYACRKGRPNCCENLQVLG-VHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRA  155 (337)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCeee-ecCCCcceeEEEechh-eEECCCCCCHHHhhhhchHHHHHHHHHhc
Confidence            999999888899999999999999995332221 2246999999999999 99999999999988776677888777778


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++.+++++||+|+|.+|++++|+|+.+|+ +++++.+++++.++++++|++++++++.  .++.+.+.+++
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~~  223 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLRELT  223 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc--cCHHHHHHHHh
Confidence            89999999999989999999999999999 7888888999999999999999998776  56777777654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=1.4e-30  Score=225.39  Aligned_cols=208  Identities=28%  Similarity=0.494  Sum_probs=183.3

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.+++++++++.+.|.++++||+||+.++++|+.|.....+.+      ..|.++|+|++|+|+++|++   +++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~------~~~~~~G~e~~G~Vv~~G~~---~~~   71 (319)
T cd08242           1 MKALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYY------PFPGVPGHEFVGIVEEGPEA---ELV   71 (319)
T ss_pred             CeeEEEeCCCcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCC------CCCCccCceEEEEEEEeCCC---CCC
Confidence            578888888899999999999999999999999999999998877643      35789999999999999988   679


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ||+|...+...|++|.+|..+.+.+|.+....+.....|+|++|+.++.+.++++|++++.++++.+.+..+++..++..
T Consensus        72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~  151 (319)
T cd08242          72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQV  151 (319)
T ss_pred             CCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhc
Confidence            99999988888999999999999888876655432357999999999999999999999998888655555677777778


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +++++++++|+|+|++|++++|+|+.+|+ .+++++.++++.++++++|++.+++++.
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  208 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA  208 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc
Confidence            89999999999999999999999999999 5888888999999999999998887753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.98  E-value=4.5e-30  Score=224.16  Aligned_cols=225  Identities=39%  Similarity=0.685  Sum_probs=196.8

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.+++.+.+++.+.|++.+++|+|||.++++|+.|+....+.+.   +...|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~~~~~   77 (343)
T cd08235           1 MKAAVLHGPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVTGFKV   77 (343)
T ss_pred             CeEEEEecCCceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCCCCCC
Confidence            4788888888899999999999999999999999999999988776542   2345778999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc-----eEECCCCCChhhhccccchHHHHH
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL-----CYKLPDNVSLEEGAMCEPLSVGVH  169 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip~~~~~~~aa~~~~~~~a~~  169 (249)
                      ||+|++.+...|+.|.+|..+...+|......+. ...|+|++|+.++.+.     ++++|+++++.+++++..+.+|++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~a~~  156 (343)
T cd08235          78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGN-LYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCIN  156 (343)
T ss_pred             CCEEEEccCCCCCCChHHHCcCcccCCCcceecc-CCCCcceeeEEecccccccccEEECCCCCCHHHHHhhhHHHHHHH
Confidence            9999999888999999999999999987654442 3569999999999998     999999999999887667778998


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++..++.+|++|+|+|+|++|++++++|+..|++.++++++++++.+.++++|+++++++++  .++.+.+++++
T Consensus       157 ~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~  230 (343)
T cd08235         157 AQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE--EDLVEKVRELT  230 (343)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc--cCHHHHHHHHh
Confidence            887778999999999998999999999999999954888888999999999999999988775  67777776654

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=4.2e-30  Score=223.92  Aligned_cols=224  Identities=27%  Similarity=0.430  Sum_probs=190.5

Q ss_pred             ceEEEEecCCCeE-EEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLK-IQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~-~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++..++... +++.|.|.+.++||+|||.++++|++|+....+...    ...|.++|+|++|+|+.+|++++.++
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~~G~~v~~~~   76 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFG----DKTGRILGHEGIGIVKEVGPGVTSLK   76 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCC----CCCCccCCcccceEEEEECCCCccCC
Confidence            6788888877655 899999999999999999999999999988766431    23467899999999999999999999


Q ss_pred             CCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           94 VGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        94 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      +||+|++.+. ..|+.|.+|..+..++|......+ ....|+|++|+.++.+.++++|+++++.+++.+. ...++|+++
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~  155 (338)
T PRK09422         77 VGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG-YTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI  155 (338)
T ss_pred             CCCEEEEccCCCCCCCChhhcCCCcccCCCccccC-ccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH
Confidence            9999997554 689999999999999998655333 2357999999999999999999999999888666 567889888


Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +...+++|+++||+|+|++|++++++++. .|+ .++++++++++.+.++++|++.+++++. ..++.+.+++.+
T Consensus       156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~v~~~~  228 (338)
T PRK09422        156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR-VEDVAKIIQEKT  228 (338)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-cccHHHHHHHhc
Confidence            77889999999999999999999999998 599 7999999999999999999999988653 144556665543

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=7.8e-30  Score=222.56  Aligned_cols=206  Identities=33%  Similarity=0.549  Sum_probs=177.7

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc--------ccCCCCCceeccceEEEEEEec
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA--------NFIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~--------~~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      ||++++.++ .+++++.+.|+++++||+|||.++++|+.|+....+....        .....+|.++|+|++|+|+++|
T Consensus         1 m~a~~~~~~-~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08262           1 MRAAVFRDG-PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYG   79 (341)
T ss_pred             CceEEEeCC-ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeC
Confidence            467777776 8999999999999999999999999999999888763210        0123457899999999999999


Q ss_pred             CCCCC-CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchH
Q 025712           87 SEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS  165 (249)
Q Consensus        87 ~~v~~-~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~  165 (249)
                      ++++. +++||+|++++...|+.|.+|..+..           ....|+|++|+.++.+.++++|++++++++++...+.
T Consensus        80 ~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~~~~  148 (341)
T cd08262          80 PGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-----------PEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLA  148 (341)
T ss_pred             CCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-----------cCCCCceeeeEEechHHeEECCCCCCHHHhhhhhhHH
Confidence            99987 99999999999999999999943211           1256999999999999999999999998887656777


Q ss_pred             HHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          166 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       166 ~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +||+++...+++++++|||+|+|++|.+++|+++.+|+..++++++++++.++++++|++++++++.
T Consensus       149 ~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~  215 (341)
T cd08262         149 VGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA  215 (341)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC
Confidence            8888877788999999999999999999999999999976888888999999999999999998765

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=7.8e-30  Score=222.73  Aligned_cols=222  Identities=40%  Similarity=0.696  Sum_probs=194.5

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.++..+.+++.+.|++.++||+||+.++++|+.|.....+.+    ....|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~----~~~~~~~~g~~~~G~V~~~g~~v~~~~~   76 (343)
T cd08236           1 MKALVLTGPGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG----AYHPPLVLGHEFSGTVEEVGSGVDDLAV   76 (343)
T ss_pred             CeeEEEecCCceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCC----CCCCCcccCcceEEEEEEECCCCCcCCC
Confidence            578888888889999999999999999999999999999998776543    2345788999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ||+|++++...|+.|.+|..+....|....+.+. ...|+|++|+.++.+.++++|+++++.+++++....++|.++...
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~  155 (343)
T cd08236          77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGS-RRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLA  155 (343)
T ss_pred             CCEEEEcCCCCCCCChhHHCcChhhCCCcceEec-ccCCcccceEEechHHeEECcCCCCHHHHHhcchHHHHHHHHHhc
Confidence            9999999888999999999999999988765553 367999999999999999999999999988777778999988778


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      .++++++++|+|+|.+|++++|+|+.+|++.++++++++++.++++++|++.+++++.  +. .+.+.+.
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~~~~  222 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE--ED-VEKVREL  222 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc--cc-HHHHHHH
Confidence            8899999999998999999999999999955888888999999999999999998775  33 4555444

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=1.3e-29  Score=223.44  Aligned_cols=225  Identities=35%  Similarity=0.500  Sum_probs=192.6

Q ss_pred             ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.++ ..+++++++.|.+.++||+|++.++++|+.|...+.+.+.    ..+|.++|+|++|+|+++|+++..++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~   76 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVVEEVGPGVTGVK   76 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEEEEeCCCccccC
Confidence            578888876 5789999999999999999999999999999988776432    35678999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc---------------CC----CCCCCceeEEEEecCCceEECCCCCC
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---------------GS----PPTNGSLAHKVVHPAKLCYKLPDNVS  154 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~----~~~~g~~~~~~~~~~~~~~~ip~~~~  154 (249)
                      +||+|++.+...|++|.+|+.+....|......               |.    ....|+|++|+.++.+.++++|++++
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~  156 (363)
T cd08279          77 PGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP  156 (363)
T ss_pred             CCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCC
Confidence            999999999999999999999999999653210               00    02468999999999999999999999


Q ss_pred             hhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          155 LEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       155 ~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +++++++. ...+||.++ +...+.+++++||+|+|++|++++++|+..|++.++++++++++.++++++|++++++.+.
T Consensus       157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~  236 (363)
T cd08279         157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE  236 (363)
T ss_pred             hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC
Confidence            99988776 467888776 5578899999999998999999999999999955899999999999999999999988765


Q ss_pred             CcccHHHHHHHHH
Q 025712          233 DIEMWGRYKMQWV  245 (249)
Q Consensus       233 ~~~~~~~~~~~~~  245 (249)
                        .++.+++.+++
T Consensus       237 --~~~~~~l~~~~  247 (363)
T cd08279         237 --DDAVEAVRDLT  247 (363)
T ss_pred             --ccHHHHHHHHc
Confidence              56777776654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=2.4e-30  Score=223.33  Aligned_cols=185  Identities=22%  Similarity=0.263  Sum_probs=150.8

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecc-cchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGIC-GSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~-~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ++++++.+|+.+++++.|.|+|+++||||||++++|| ++|+.++.|.+.......+|.++|||++|+|+++|+++ +|+
T Consensus         2 ~ka~~~~~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~   80 (308)
T TIGR01202         2 TQAIVLSGPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFR   80 (308)
T ss_pred             ceEEEEeCCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCC
Confidence            6788888999999999999999999999999999997 69988877754221113579999999999999999998 699


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR  173 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~  173 (249)
                      +||+|+..    |..|..|..               ...|+|+||+.++.+.++++|++++++. +++....+||++++.
T Consensus        81 vGdrV~~~----~~~c~~~~~---------------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~~~~a~~~~~~  140 (308)
T TIGR01202        81 PGDRVFVP----GSNCYEDVR---------------GLFGGASKRLVTPASRVCRLDPALGPQG-ALLALAATARHAVAG  140 (308)
T ss_pred             CCCEEEEe----Ccccccccc---------------ccCCcccceEEcCHHHceeCCCCCCHHH-HhhhHHHHHHHHHHh
Confidence            99999863    222322211               1359999999999999999999998764 555567899999866


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      . ..++++++|+|+|++|++++|+++++|++.+++++.++++++.+++
T Consensus       141 ~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~  187 (308)
T TIGR01202       141 A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG  187 (308)
T ss_pred             c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence            4 3468999999999999999999999999767778878778776643

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=1.5e-29  Score=221.72  Aligned_cols=228  Identities=29%  Similarity=0.435  Sum_probs=191.2

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc---------ccCCCCCceeccceEEEEEE
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA---------NFIVKKPMVIGHECAGIIEE   84 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~---------~~~~~~p~~~G~e~~G~V~~   84 (249)
                      ||++++..++ .++++++|.|+++++||+||+.++++|++|+....+.+..         .....+|.++|+|++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            5677776554 4899999999999999999999999999999887663210         00134567899999999999


Q ss_pred             ecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-c
Q 025712           85 VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-P  163 (249)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~  163 (249)
                      +|++++++++||+|++++...|++|.+|..++..+|......+. ...|+|++|+.++.+.++++|+++++.+++.+. .
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~  159 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGI-FQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACS  159 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceee-eccCcceeeEEecHHHeeeCCCCCCHHHeehhhch
Confidence            99999999999999999999999999999999999976443332 257999999999999999999999999888665 5


Q ss_pred             hHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          164 LSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       164 ~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      +.+||++++. ....++++++|+|+|++|++++|+|+..|++.++++++++++.+.++++|++.+++.+.  .++.+.+.
T Consensus       160 ~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~  237 (350)
T cd08240         160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD--PDAAKRII  237 (350)
T ss_pred             hhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC--ccHHHHHH
Confidence            7899998865 44568999999999999999999999999977888889999999999999998887654  56666666


Q ss_pred             HHH
Q 025712          243 QWV  245 (249)
Q Consensus       243 ~~~  245 (249)
                      +..
T Consensus       238 ~~~  240 (350)
T cd08240         238 KAA  240 (350)
T ss_pred             HHh
Confidence            543

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=1.8e-29  Score=225.20  Aligned_cols=219  Identities=23%  Similarity=0.256  Sum_probs=184.0

Q ss_pred             ccceEEEEec-----C-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc-------ccCCCCC-ceeccce
Q 025712           13 NQNMAAWLLG-----I-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-------NFIVKKP-MVIGHEC   78 (249)
Q Consensus        13 ~~~~~~~~~~-----~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-------~~~~~~p-~~~G~e~   78 (249)
                      .+|+++++..     | +.+++.++|.|.++++||+||+.++++|+.|+....+....       ......| .++|||+
T Consensus         6 ~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~   85 (398)
T TIGR01751         6 ETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDA   85 (398)
T ss_pred             hhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccce
Confidence            4577777742     2 46999999999999999999999999999997765442210       0001233 3799999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhh
Q 025712           79 AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG  158 (249)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  158 (249)
                      +|+|+++|++++.+++||+|++.+...|++|.+|+.+.+++|......+.....|+|++|+.++...++++|++++++++
T Consensus        86 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~a  165 (398)
T TIGR01751        86 SGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEA  165 (398)
T ss_pred             EEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHH
Confidence            99999999999999999999999999999999999999999987655554456799999999999999999999999988


Q ss_pred             cccc-chHHHHHHHH---HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          159 AMCE-PLSVGVHACR---RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       159 a~~~-~~~~a~~~l~---~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.+. ...++|.++.   ..++.++++++|+| +|++|++++++++.+|+ .++.+++++++.+.++++|+++++|++.
T Consensus       166 a~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~  243 (398)
T TIGR01751       166 ACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRND  243 (398)
T ss_pred             hhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCC
Confidence            8655 6778998874   36789999999998 59999999999999999 6777778999999999999999998764

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.97  E-value=2.5e-29  Score=218.73  Aligned_cols=211  Identities=28%  Similarity=0.437  Sum_probs=183.9

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.++++ +++++.|.|.+.++|++||+.++++|+.|+....+...   ...+|.++|+|++|+|+.+|++++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~g~~~~~~~   77 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP---RMKYPVILGHEVVGTVEEVGENVKGFK   77 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCC---CCCCCeeccccceEEEEEeCCCCccCC
Confidence            57888888875 99999999999999999999999999999987766431   135578899999999999999998899


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      +||+|++.+...|++|.+|..+.+++|......+. ...|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++.
T Consensus        78 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~  156 (334)
T PRK13771         78 PGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGE-ELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLR  156 (334)
T ss_pred             CCCEEEECCCCCCcCChhhcCCCcccCcccccccc-ccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHH
Confidence            99999998888999999999999999988665543 357999999999999999999999998888666 5778898886


Q ss_pred             HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ...+.++++++|+| +|.+|++++++++.+|+ .++++++++++.+.++++ ++++++++
T Consensus       157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~  214 (334)
T PRK13771        157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS  214 (334)
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch
Confidence            66889999999998 59999999999999999 788888899999999888 77766543

>cd05281 TDH Threonine dehydrogenase

Probab=99.97  E-value=5.4e-29  Score=217.51  Aligned_cols=226  Identities=32%  Similarity=0.528  Sum_probs=187.5

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||+.+++.++ .+++.+.+.|.|.++|++|||.++++|+.|+..+.+..........|.++|+|++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            4677777665 599999999999999999999999999999887543211111134577899999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR  173 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~  173 (249)
                      +||+|++++...|+.|.+|..+...+|....+.+. ...|+|++|+.++.+.++++|++++++.+++...+.++++++. 
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~~~a~~~~~-  158 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGV-DTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL-  158 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccceEec-cCCCcceEEEEechHHcEECcCCCCHHHhhhhhHHHHHHHHHH-
Confidence            99999999888999999999999999976544442 3579999999999999999999999877766667778887765 


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ....+|++++|+|+|++|++++|+++.+|...+++++++++|.++++++|++++++++.  .++. .+.+++
T Consensus       159 ~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~~~  227 (341)
T cd05281         159 AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE--EDVV-EVKSVT  227 (341)
T ss_pred             hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc--ccHH-HHHHHc
Confidence            34578999999988999999999999999866888888999999999999999987664  5565 555543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=9.5e-29  Score=215.72  Aligned_cols=225  Identities=29%  Similarity=0.471  Sum_probs=194.0

Q ss_pred             ceEEEEecCC--CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGIK--TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~~--~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |+++++..++  .+++++.+.|.+.++|++||+.++++|+.|...+.+.+...  ...|.++|+|++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~V~~vG~~~~~~   78 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK--PKLPLIGGHEGAGVVVAVGPGVSGL   78 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC--CCCCccCCcccceEEEEeCCCCCCC
Confidence            5788888766  89999999999999999999999999999998877654211  3457789999999999999999999


Q ss_pred             CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      ++||+|++.+. ..|++|.+|..++..+|......+. ...|+|++|+.++.+.++++|+++++.+++.+. ...+||.+
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~  157 (341)
T cd08297          79 KVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGY-TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKA  157 (341)
T ss_pred             CCCCEEEEecCCCCCCCCccccCCCcccCCCcccccc-ccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHH
Confidence            99999998764 6799999999999999977554433 346899999999999999999999998888555 67789998


Q ss_pred             HHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +...++++++++||+| ++++|++++++|++.|+ .++++.+++++.+.++++|++++++++.  .++.+++.+++
T Consensus       158 ~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~  230 (341)
T cd08297         158 LKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAVKELT  230 (341)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC--ccHHHHHHHHh
Confidence            8777899999999998 56799999999999999 7899989999999999999999998775  57877777765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.2e-28  Score=215.42  Aligned_cols=225  Identities=33%  Similarity=0.491  Sum_probs=190.7

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++..++ .+++++.+.|.+.+++|+||+.++++|+.|+....+.+.   ....|.++|+|++|.|+.+|++++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~~G~~~~~~~   77 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDP---DVTLPHVPGHEFAGVVVEVGEDVSRWR   77 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCC---CCCCCeeeccceeEEEEEECCCCccCC
Confidence            5777777654 599999999999999999999999999999988777542   135688999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +||+|++.+...|++|.+|..+...+|.+.. ..+....|+|++|+.++..  .++++|+++++.+++.+. ...+||++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  156 (345)
T cd08260          78 VGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV-QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRA  156 (345)
T ss_pred             CCCEEEECCCCCCCCCccccCcCcccCCCCc-ccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHH
Confidence            9999998666789999999999999999752 2222347999999999974  899999999998888665 57889988


Q ss_pred             H-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + +..++.++++++|+|+|++|++++++++..|+ .++++++++++.+.++++|++++++++. ..++.+.+.+++
T Consensus       157 l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~  230 (345)
T cd08260         157 LVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE-VEDVAAAVRDLT  230 (345)
T ss_pred             HHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc-chhHHHHHHHHh
Confidence            7 56788999999999999999999999999999 7889989999999999999999998764 245666665543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.97  E-value=2.7e-29  Score=217.93  Aligned_cols=199  Identities=22%  Similarity=0.286  Sum_probs=165.9

Q ss_pred             ceEEEEecCC------CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           15 NMAAWLLGIK------TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        15 ~~~~~~~~~~------~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ||++++.+++      .++++++|.|.|+++||+||+.++++|++|+..+.+.+..  ....|.++|||++|+|+++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~   78 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGG   78 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCC
Confidence            5677777654      5888999999999999999999999999999988775421  1356889999999999999999


Q ss_pred             CCC-CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712           89 VKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        89 v~~-~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      +++ |++||+|+..+.                           .+|+|++|+.++.+.++++|+++++.+++.+. ...+
T Consensus        79 v~~~~~vGd~V~~~~~---------------------------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~t  131 (324)
T cd08291          79 PLAQSLIGKRVAFLAG---------------------------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLT  131 (324)
T ss_pred             ccccCCCCCEEEecCC---------------------------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHH
Confidence            996 999999986521                           14999999999999999999999999888544 4557


Q ss_pred             HHHHHHHcCCCCCCeEEEE--cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~--G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ||.+++.... +++.++|+  |+|++|++++|+|+.+|+ .++++++++++.++++++|++++++++.  +++.+.++++
T Consensus       132 a~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~v~~~  207 (324)
T cd08291         132 ALGMLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD--PDFLEDLKEL  207 (324)
T ss_pred             HHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC--ccHHHHHHHH
Confidence            7766655554 56666665  589999999999999999 7899999999999999999999998776  6888888876


Q ss_pred             HH
Q 025712          245 VQ  246 (249)
Q Consensus       245 ~~  246 (249)
                      +.
T Consensus       208 ~~  209 (324)
T cd08291         208 IA  209 (324)
T ss_pred             hC
Confidence            54

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=5.6e-29  Score=217.17  Aligned_cols=212  Identities=30%  Similarity=0.469  Sum_probs=183.2

Q ss_pred             EEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCC
Q 025712           17 AAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG   95 (249)
Q Consensus        17 ~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   95 (249)
                      ++.++.+ ..|++++.+.|++.++||+||+.++++|+.|...+.+.+.   ....|.++|||++|+|+++|++++.+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (337)
T cd05283           2 GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTKFKVG   78 (337)
T ss_pred             ceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcccCCC
Confidence            3445544 5899999999999999999999999999999998877541   23568899999999999999999999999


Q ss_pred             CeEEEc-cCcCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           96 DRVALE-PGISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        96 d~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      |+|++. ....|++|.+|..+..++|....+..      +....|+|++|+.++.+.++++|+++++.+++.+. ...+|
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta  158 (337)
T cd05283          79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITV  158 (337)
T ss_pred             CEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHH
Confidence            999843 44589999999999999998765442      12356999999999999999999999999888655 56788


Q ss_pred             HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      |.+++...++++++++|.|.|++|++++++++.+|+ .++.+++++++.++++++|++++++...
T Consensus       159 ~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~  222 (337)
T cd05283         159 YSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD  222 (337)
T ss_pred             HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc
Confidence            988877778999999999899999999999999999 7899989999999999999999987654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.97  E-value=4.9e-29  Score=217.73  Aligned_cols=221  Identities=32%  Similarity=0.563  Sum_probs=185.7

Q ss_pred             ecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEE
Q 025712           21 LGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA   99 (249)
Q Consensus        21 ~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~   99 (249)
                      ++|+ .+++++.|.|.|+++||+||+.++++|+.|...+.+.........+|.++|+|++|+|+++|++++.+++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            3443 688999999999999999999999999999987654321111234577899999999999999999999999999


Q ss_pred             EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCC
Q 025712          100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPE  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g  179 (249)
                      +.+.+.|+.|..|..+...+|....+.+ ....|+|++|+.++.+.++++|+++++..++....+.++++++ .....+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~a~~~~-~~~~~~g  162 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISG  162 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcceEe-ecCCCcceeEEEeehHHcEECcCCCChHhhhhcchHHHHHHHH-HccCCCC
Confidence            9999999999999999999999865543 2257999999999999999999999987776666777887765 3456789


Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++++|.|+|++|++++|+++.+|++.++++++++++.++++++|+++++++..  .++.+.+.+++
T Consensus       163 ~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~l~~~~  226 (340)
T TIGR00692       163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK--EDVVKEVADLT  226 (340)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc--cCHHHHHHHhc
Confidence            99999888999999999999999955888888999999999999999988765  67777776654

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=7.4e-29  Score=215.63  Aligned_cols=213  Identities=39%  Similarity=0.715  Sum_probs=189.2

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |+++++.+++.+++.+.+.|+++++||+||+.++++|+.|.....+.+.    ..+|.++|+|++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~----~~~p~~~g~~~~G~v~~vG~~v~~~~~   76 (334)
T cd08234           1 MKALVYEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFG----AAPPLVPGHEFAGVVVAVGSKVTGFKV   76 (334)
T ss_pred             CeeEEecCCCceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCC----CCCCcccccceEEEEEEeCCCCCCCCC
Confidence            5788898888999999999999999999999999999999988776542    236789999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA  174 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~  174 (249)
                      ||+|++.+...|+.|.+|..+...+|...+..+. ...|+|++|+.++.+.++++|+++++.+++....+.+++++++..
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~  155 (334)
T cd08234          77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGV-TRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLL  155 (334)
T ss_pred             CCEEEEcCCcCCCCCccccCcChhhCCCcceecc-CCCCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHHhc
Confidence            9999998888899999999999999988765432 256999999999999999999999999888666677888888778


Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++.++++++|+|+|.+|.+++++|+..|++.++++++++++.++++++|++++++++.
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~  213 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR  213 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC
Confidence            8999999999998999999999999999955888889999999999999998888765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=1.4e-29  Score=207.66  Aligned_cols=186  Identities=23%  Similarity=0.272  Sum_probs=160.3

Q ss_pred             ccceEEEEecC----CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           13 NQNMAAWLLGI----KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        13 ~~~~~~~~~~~----~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ...++++|...    +.++++..+.|....++|+||..|++|||+|+..++|.|...  +++|.+-|+|++|+|+.+|++
T Consensus        18 ~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvr--P~~PAVgGnEGv~eVv~vGs~   95 (354)
T KOG0025|consen   18 ARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVR--PELPAVGGNEGVGEVVAVGSN   95 (354)
T ss_pred             cccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCC--CCCCcccCCcceEEEEEecCC
Confidence            44577777743    468999999998888889999999999999999999987443  577899999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVG  167 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a  167 (249)
                      +++|++||+|+...                           ...|+|+++...+++.+++++..++++.||.+.. -+||
T Consensus        96 vkgfk~Gd~VIp~~---------------------------a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TA  148 (354)
T KOG0025|consen   96 VKGFKPGDWVIPLS---------------------------ANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTA  148 (354)
T ss_pred             cCccCCCCeEeecC---------------------------CCCccceeeEeecccceEEcCCcCChhhhheeccCchHH
Confidence            99999999999763                           3679999999999999999999999999998886 5589


Q ss_pred             HHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCEEe
Q 025712          168 VHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETA  228 (249)
Q Consensus       168 ~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~vi  228 (249)
                      |+++ +..++.+|++|+-.| .++||++.+|+||+.|+ +.|.+.++...++.+    +.+||++||
T Consensus       149 yrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~Vi  214 (354)
T KOG0025|consen  149 YRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVI  214 (354)
T ss_pred             HHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEe
Confidence            9999 558999999988887 69999999999999999 455555666555554    568999998

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=5.4e-29  Score=217.61  Aligned_cols=191  Identities=15%  Similarity=0.155  Sum_probs=154.6

Q ss_pred             CCCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEc
Q 025712           23 IKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE  101 (249)
Q Consensus        23 ~~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  101 (249)
                      ++.++++|.|.|.| +++||||||+|++||+.|...............+|.++|+|++|+|+++|+++++|++||+|+..
T Consensus        20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   99 (345)
T cd08293          20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF   99 (345)
T ss_pred             ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence            45799999999987 49999999999999999864332111001123567899999999999999999999999999753


Q ss_pred             cCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChh-----hhccccchHHHHHHH-HHcC
Q 025712          102 PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLE-----EGAMCEPLSVGVHAC-RRAN  175 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~-----~aa~~~~~~~a~~~l-~~~~  175 (249)
                                                    .++|+||+.++.+.++++|+++++.     .+++..++.+||+++ +.++
T Consensus       100 ------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~  149 (345)
T cd08293         100 ------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGH  149 (345)
T ss_pred             ------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhcc
Confidence                                          1579999999999999999985432     233444678999888 4567


Q ss_pred             CCCC--CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712          176 VGPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       176 ~~~g--~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++|  ++|||+| +|++|++++|+|+++|+.+|+++++++++.+++++ +|+++++++++  +++.+.+++++
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~~  221 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--DNVAERLRELC  221 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--CCHHHHHHHHC
Confidence            7776  9999998 59999999999999998668999899999999876 99999998776  67887777654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.5e-28  Score=213.04  Aligned_cols=212  Identities=37%  Similarity=0.581  Sum_probs=184.4

Q ss_pred             ceEEEEec-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLG-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |+++++.. ++.+.+++.|.|.+.++||+|+++++++|+.|+....+...   ....|.++|+|++|+|+++|++++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~G~~v~~~~   77 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFP---RGKYPLILGHEIVGTVEEVGEGVERFK   77 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCC---CCCCCeeccccceEEEEEECCCCccCC
Confidence            46777765 57899999999999999999999999999999988776432   134578999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      +||+|++++...|++|.+|+.+.+.+|.+....+ ....|+|++|+.++...++++|+++++++++.+. .+.+||+++.
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~  156 (332)
T cd08259          78 PGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYG-EEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALK  156 (332)
T ss_pred             CCCEEEECCCCCCcCChhhhCCCcccCCCccccc-cccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHH
Confidence            9999999988899999999999999998753333 3457999999999999999999999998888665 6778998886


Q ss_pred             HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ...+.++++++|+| +|++|++++++++..|+ .++++.+++++.+.++++|++++++.+
T Consensus       157 ~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~  215 (332)
T cd08259         157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS  215 (332)
T ss_pred             HhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH
Confidence            68889999999998 69999999999999999 688888888999999999988877543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.5e-28  Score=216.91  Aligned_cols=225  Identities=32%  Similarity=0.483  Sum_probs=192.5

Q ss_pred             ceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC--
Q 025712           15 NMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS--   91 (249)
Q Consensus        15 ~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~--   91 (249)
                      |+++++..+ ..+++++.|.|.++++||+||+.++++|+.|+....+.+    +..+|.++|+|++|+|+.+|+++.+  
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~----~~~~p~~~g~e~~G~v~~vG~~~~~~~   76 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGEL----PFPPPFVLGHEISGEVVEVGPNVENPY   76 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCC----CCCCCcccccccceEEEEeCCCCCCCC
Confidence            467777766 458899999999999999999999999999998877643    2356789999999999999999988  


Q ss_pred             -CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC---------------------CCCCCceeEEEEecCCceEEC
Q 025712           92 -LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS---------------------PPTNGSLAHKVVHPAKLCYKL  149 (249)
Q Consensus        92 -~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~g~~~~~~~~~~~~~~~i  149 (249)
                       +++||+|++.+...|++|.+|..+...+|.....+..                     ....|+|++|+.++.+.++++
T Consensus        77 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (367)
T cd08263          77 GLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPL  156 (367)
T ss_pred             cCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEEC
Confidence             9999999998888999999999999999987542100                     013589999999999999999


Q ss_pred             CCCCChhhhcccc-chHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          150 PDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       150 p~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      |+++++.+++.+. .+.+||.++.. ..+.++++++|+|+|++|++++++|+..|+..++++++++++.+.++++|++.+
T Consensus       157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v  236 (367)
T cd08263         157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT  236 (367)
T ss_pred             CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceE
Confidence            9999999988766 57899988844 667899999999999999999999999999558888889999999999999999


Q ss_pred             ecCCCCcccHHHHHHHHH
Q 025712          228 AKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       228 i~~~~~~~~~~~~~~~~~  245 (249)
                      ++++.  .++.+++++++
T Consensus       237 ~~~~~--~~~~~~l~~~~  252 (367)
T cd08263         237 VNAAK--EDAVAAIREIT  252 (367)
T ss_pred             ecCCc--ccHHHHHHHHh
Confidence            98775  67777777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=2.4e-28  Score=212.14  Aligned_cols=213  Identities=30%  Similarity=0.483  Sum_probs=185.3

Q ss_pred             ceEEEEecCC-----CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           15 NMAAWLLGIK-----TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        15 ~~~~~~~~~~-----~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      |+++++.+++     .+++++.+.|.+.++||+||+.++++|++|+....+.+..   ...|.++|+|++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v   77 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP---PKLPLIPGHEIVGRVEAVGPGV   77 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC---CCCCccccccccEEEEEECCCC
Confidence            4667777666     6888898888899999999999999999999887764321   3457899999999999999999


Q ss_pred             CCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           90 KSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      .++++||+|++.+. ..|+.|.+|+.+.+++|+.....+. ...|+|++|+.++.+.++++|+++++.+++.+. .+.+|
T Consensus        78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta  156 (329)
T cd08298          78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGY-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIG  156 (329)
T ss_pred             CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCcccccc-ccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHH
Confidence            99999999987544 6899999999999999998776654 346999999999999999999999998888555 67889


Q ss_pred             HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      |++++.++++++++++|+|+|++|++++++++..|+ +++++++++++.+.++++|++++++.+.
T Consensus       157 ~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  220 (329)
T cd08298         157 YRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDD  220 (329)
T ss_pred             HHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc
Confidence            998877899999999999999999999999999999 7888888999999999999988887653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4e-28  Score=209.23  Aligned_cols=223  Identities=37%  Similarity=0.668  Sum_probs=186.5

Q ss_pred             ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |++++..++  ..+++++++.|++.+++|+|||.++++|+.|+....+.+.   ....|.++|+|++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~   77 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD---PVETPVVLGHEFSGTIVEVGPDVEGW   77 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---cCCCCeeeccceEEEEEEECCCcCcC
Confidence            356666643  4699999999999999999999999999999987776531   23457899999999999999999999


Q ss_pred             CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHH
Q 025712           93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l  171 (249)
                      ++||+|++.+. ..|+.|.+|..+...+|......+ ....|+|++|+.++.+.++++|+++++.++++...+.++|+++
T Consensus        78 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~a~~~l  156 (306)
T cd08258          78 KVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIG-TQADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAV  156 (306)
T ss_pred             CCCCEEEEccCcCCCCCCcchhCcCcccCCCCceee-ecCCCceEEEEEcchHHeEECcCCCCHHHHHhhchHHHHHHHH
Confidence            99999998774 689999999999999998753332 2356999999999999999999999999888666778888887


Q ss_pred             -HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          172 -RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       172 -~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                       ...+++++++++|.|+|++|++++++|+.+|+ +++.+  .+++++.++++++|++++ ++..  +++.+.+.+++
T Consensus       157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~--~~~~~~l~~~~  229 (306)
T cd08258         157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE--EDLAELVNEIT  229 (306)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc--CCHHHHHHHHc
Confidence             55788999999998889999999999999999 56665  345668889999999888 7654  67777776654

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.96  E-value=1.1e-28  Score=210.17  Aligned_cols=159  Identities=28%  Similarity=0.458  Sum_probs=142.2

Q ss_pred             eeccceEEEEEEecCCCC------CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC------CCCCceeEEEE
Q 025712           73 VIGHECAGIIEEVGSEVK------SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------PTNGSLAHKVV  140 (249)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~  140 (249)
                      ++|||++|+|+++|++|+      ++++||||++.+...|++|.+|+.+++++|......+..      ..+|+|+||+.
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      899999999998899999999999999999986655421      24699999999


Q ss_pred             ecCC-ceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          141 HPAK-LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       141 ~~~~-~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++.. .++++|+++++++++.+. ...++|+++++....++++|||+|+|++|++++|+|+++|+++|++++.+++|+++
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~  160 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL  160 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            9997 699999999999888766 46788888877777799999999999999999999999999668888889999999


Q ss_pred             HHHcCCCEEecCC
Q 025712          219 ARNLGADETAKVS  231 (249)
Q Consensus       219 ~~~~ga~~vi~~~  231 (249)
                      ++++|++++++++
T Consensus       161 a~~~Ga~~~i~~~  173 (280)
T TIGR03366       161 ALSFGATALAEPE  173 (280)
T ss_pred             HHHcCCcEecCch
Confidence            9999999998764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.96  E-value=6e-28  Score=208.83  Aligned_cols=199  Identities=25%  Similarity=0.267  Sum_probs=170.3

Q ss_pred             ceEEEEecCC----CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           15 NMAAWLLGIK----TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        15 ~~~~~~~~~~----~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      |+++++.+++    .++++++|.|.+.++||+|||.++++|+.|+..+.+.+..  ....|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~   78 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVK   78 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCC
Confidence            4677776654    4889999999999999999999999999999888765421  134578999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      .+++||+|++.+                            ..|+|++|+.++...++++|+++++++++.+. ...++++
T Consensus        79 ~~~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~  130 (324)
T cd08292          79 GLQVGQRVAVAP----------------------------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALM  130 (324)
T ss_pred             CCCCCCEEEecc----------------------------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHH
Confidence            999999998652                            36999999999999999999999999888665 4567888


Q ss_pred             HHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++...++++|+++||+| +|.+|++++|+|+++|+ .++++.+++++.+.++++|++++++++.  +++.+.+.+++.
T Consensus       131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~  205 (324)
T cd08292         131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ--PGWQDKVREAAG  205 (324)
T ss_pred             HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC--chHHHHHHHHhC
Confidence            88778899999999997 69999999999999999 7888888888999999999999988765  678777777654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=7.4e-28  Score=208.69  Aligned_cols=207  Identities=31%  Similarity=0.519  Sum_probs=175.8

Q ss_pred             ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |+++++.++  +.+++++.+.|+++++||+||+.++++|++|+....+..    ...+|.++|+|++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~   76 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK----VKPMPHIPGAEFAGVVEEVGDHVKGV   76 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC----CCCCCeecccceeEEEEEECCCCCCC
Confidence            466777654  478888988888999999999999999999987765311    12357789999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      ++||+|++++...|++|.+|..++.++|......+ ....|+|++|+.++.+.++++|+++++++++.+. .+.++|+++
T Consensus        77 ~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l  155 (325)
T cd08264          77 KKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIG-VVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL  155 (325)
T ss_pred             CCCCEEEECCCcCCCCChhhcCCCccccCccceee-ccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence            99999999988899999999999999998754433 2356899999999999999999999998888666 567889888


Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +..+++++++++|+| +|++|++++++|+.+|+ .++++.    +.++++++|++++++.+
T Consensus       156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~  211 (325)
T cd08264         156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD  211 (325)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence            778899999999998 59999999999999999 677775    23777889999888754

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.2e-27  Score=207.64  Aligned_cols=225  Identities=32%  Similarity=0.514  Sum_probs=190.1

Q ss_pred             ceEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++.   .+..+.+++.+.|.+.+++|+|++.++++|+.|+..+.+.+.  .....|.++|||++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~v~~~G~~~~~   78 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPG--IKLPLPHILGSDGAGVVEAVGPGVTN   78 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCC--CCCCCCeecccceEEEEEEeCCCCCC
Confidence            4677777   456788888888889999999999999999999988876432  12356889999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++.+...|++|.+|..+.+++|.+..+.|. ...|+|++|+.++.+.++++|+++++.+++.+. ...+++++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~  157 (342)
T cd08266          79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHM  157 (342)
T ss_pred             CCCCCEEEEccccccccchhhcccccccccccccccc-ccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999999998655443 356899999999999999999999998888665 46788887


Q ss_pred             H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + +...+.++++++|+| ++++|++++++++..|+ .++.+++++++.+.+++++.+.+++...  .++.+.+.+.+
T Consensus       158 l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  231 (342)
T cd08266         158 LVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRK--EDFVREVRELT  231 (342)
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCC--hHHHHHHHHHh
Confidence            6 557889999999998 57999999999999999 6888888999999999899888776554  55655555543

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=2.8e-27  Score=205.68  Aligned_cols=221  Identities=34%  Similarity=0.566  Sum_probs=186.8

Q ss_pred             ceEEEEecCCC--eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGIKT--LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~~~--l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |+++++..++.  +.+++.+.|.+++++|+|++.++++|+.|.....+.+.  .....|.++|+|++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~~~~g~~~~G~v~~~G~~v~~~   78 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP--TLTKLPLTLGHEIAGTVVEVGAGVTNF   78 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCc--ccCCCCEeccccccEEEEEECCCCccC
Confidence            57777876653  58888999999999999999999999999988876542  224567899999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      ++||+|++.+-..|+.|.+|..+...+|..-...+ ....|+|++|+.++.+.++++|+++++.+++.+. .+.+||+++
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l  157 (338)
T cd08254          79 KVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPG-LGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV  157 (338)
T ss_pred             CCCCEEEECCCCCCCCChhhhCcCcccCCCCCccc-cccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            99999999888899999999999988885432222 2357999999999999999999999998888664 788999887


Q ss_pred             HH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712          172 RR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK  241 (249)
Q Consensus       172 ~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~  241 (249)
                      .. ..+++++++||.|+|++|++++++|+..|+ +++++++++++.+.++++|++++++...  ..+.+.+
T Consensus       158 ~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~  225 (338)
T cd08254         158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKK  225 (338)
T ss_pred             HhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHH
Confidence            44 678999999999889999999999999999 6899999999999999999999887654  4444444

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.96  E-value=3e-27  Score=205.27  Aligned_cols=212  Identities=32%  Similarity=0.461  Sum_probs=183.5

Q ss_pred             eEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           16 MAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        16 ~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      |++++.++ ..+++++.|.|.+.+++|+|++.++++|+.|...+.+...   ....|.++|+|++|+|+++|++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~~g~~~~~~~~   77 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG---GSKYPLVPGHEIVGEVVEVGAGVEGRKV   77 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC---CCCCCcccCccceEEEEEECCCCccccc
Confidence            46777777 5899999999999999999999999999999988876542   1345789999999999999999999999


Q ss_pred             CCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           95 GDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        95 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      ||+|++.+. ..|++|.+|+.++.++|.+....+. ...|+|++|+.++.+.++++|+++++.+++.+. ...+||.+++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~  156 (330)
T cd08245          78 GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGY-TTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALR  156 (330)
T ss_pred             CCEEEEccccCCCCCChhhhCcCcccCcCccccCc-ccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            999987654 5799999999999999987433321 246899999999999999999999999888655 5678888887


Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ...++++++++|+|+|++|++++++++.+|+ .++++++++++.++++++|++.+++...
T Consensus       157 ~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  215 (330)
T cd08245         157 DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA  215 (330)
T ss_pred             hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC
Confidence            7889999999999988899999999999999 7899889999999999999999887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.96  E-value=4.5e-27  Score=203.90  Aligned_cols=179  Identities=19%  Similarity=0.191  Sum_probs=150.1

Q ss_pred             CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712           24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG  103 (249)
Q Consensus        24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  103 (249)
                      +.+++++.+.|+|+++||||||++++||+.|..+..      .....|.++|+|++|+|++   .++.|++||+|+.+  
T Consensus        19 ~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~------~~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~--   87 (329)
T cd08294          19 SDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK------RLNEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS--   87 (329)
T ss_pred             cceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc------cCCCCCcEecceEEEEEec---CCCCCCCCCEEEee--
Confidence            468999999999999999999999999987654211      1124688999999999985   45679999999743  


Q ss_pred             cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC---ceEECCCCCC------hhhhccccchHHHHHHH-HH
Q 025712          104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK---LCYKLPDNVS------LEEGAMCEPLSVGVHAC-RR  173 (249)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~ip~~~~------~~~aa~~~~~~~a~~~l-~~  173 (249)
                                                   ++|++|..++.+   .++++|++++      ...+++...+.+||+++ +.
T Consensus        88 -----------------------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~  138 (329)
T cd08294          88 -----------------------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEI  138 (329)
T ss_pred             -----------------------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHh
Confidence                                         578999999999   9999999987      22233344688999998 56


Q ss_pred             cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .++++|+++||+| +|++|++++|+|+.+|+ +++++++++++.++++++|+++++++++  +++.+.+++++
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~--~~~~~~v~~~~  208 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT--VSLEEALKEAA  208 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHC
Confidence            8899999999998 79999999999999999 7999999999999999999999998876  67877776654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.96  E-value=8.1e-27  Score=203.60  Aligned_cols=188  Identities=18%  Similarity=0.159  Sum_probs=154.0

Q ss_pred             CCCeEEEEecC----CCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccce--EEEEEEecCCCCCCCCCC
Q 025712           23 IKTLKIQPYHL----PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHEC--AGIIEEVGSEVKSLEVGD   96 (249)
Q Consensus        23 ~~~l~~~~~~~----p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~--~G~V~~vG~~v~~~~~Gd   96 (249)
                      ++.|++++.+.    |+|+++||||||+|++||+.|+..+.+.+..  ....|.++|++.  .|.+..+|+.++.|++||
T Consensus        18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd   95 (338)
T cd08295          18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAKVVDSGNPDFKVGD   95 (338)
T ss_pred             ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEEEEecCCCCCCCCC
Confidence            35799999887    8899999999999999999999888774311  124577888754  456666788888999999


Q ss_pred             eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecC-CceEECC-CCCChh-hhcccc-chHHHHHHH-
Q 025712           97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLP-DNVSLE-EGAMCE-PLSVGVHAC-  171 (249)
Q Consensus        97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip-~~~~~~-~aa~~~-~~~~a~~~l-  171 (249)
                      +|+.+                               |+|+||+.++. ..++++| +++++. +++.+. .+.+||+++ 
T Consensus        96 ~V~~~-------------------------------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~  144 (338)
T cd08295          96 LVWGF-------------------------------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFY  144 (338)
T ss_pred             EEEec-------------------------------CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHH
Confidence            99743                               78999999999 7999995 568775 555444 678999998 


Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +..++++|+++||+| +|++|++++|+|+.+|+ +++++++++++.+++++ +|++++++++++ +++.+.+++++
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~~~i~~~~  218 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKEE-PDLDAALKRYF  218 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCCc-ccHHHHHHHhC
Confidence            457899999999998 59999999999999999 78888899999999998 999999987642 46777666543

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.95  E-value=5.4e-27  Score=203.62  Aligned_cols=181  Identities=17%  Similarity=0.179  Sum_probs=150.2

Q ss_pred             cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEc
Q 025712           22 GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE  101 (249)
Q Consensus        22 ~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  101 (249)
                      +|+.|+++|.+.|+|++|||||||.|+++|+.+.   .+.+.   ....|.++|.|++|+|++.|+   .|++||+|+.+
T Consensus        15 ~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~---~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~   85 (325)
T TIGR02825        15 TDSDFELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKR---LKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS   85 (325)
T ss_pred             CCCceEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCc---CCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe
Confidence            5678999999999999999999999999999654   33221   123478999999999999874   59999999853


Q ss_pred             cCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEEC----CCCCChhhh-ccc-cchHHHHHHH-HHc
Q 025712          102 PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL----PDNVSLEEG-AMC-EPLSVGVHAC-RRA  174 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~~-~~~~~a~~~l-~~~  174 (249)
                                                     ++|++|+.++.+.+.++    |++++++++ +.+ .++.+||+++ +.+
T Consensus        86 -------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~  134 (325)
T TIGR02825        86 -------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEIC  134 (325)
T ss_pred             -------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHh
Confidence                                           46899999999888877    888998887 444 4688999987 668


Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ++++|++|||+| +|++|++++|+|+..|+ +++++++++++.++++++|+++++++++. +++.+.+.+.
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~-~~~~~~~~~~  203 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTV-KSLEETLKKA  203 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEecccc-ccHHHHHHHh
Confidence            899999999998 69999999999999999 78999899999999999999999987752 2455555443

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.95  E-value=1.6e-26  Score=202.67  Aligned_cols=197  Identities=15%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             ccceEEEEe-------cCCCeEEEEe---cCC-CCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceecc--ceE
Q 025712           13 NQNMAAWLL-------GIKTLKIQPY---HLP-TLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH--ECA   79 (249)
Q Consensus        13 ~~~~~~~~~-------~~~~l~~~~~---~~p-~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~--e~~   79 (249)
                      .++|++++.       .++.|++++.   +.| ++++|||||||.++++||.|...+.+.+   .....|+++|+  |++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~---~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFH---DSYLPPFVPGQRIEGF   83 (348)
T ss_pred             ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccC---CCCCCCcCCCCeeEee
Confidence            346777765       2346888884   666 4589999999999999999876443311   11235889997  889


Q ss_pred             EEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc--eE--ECCCCCCh
Q 025712           80 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL--CY--KLPDNVSL  155 (249)
Q Consensus        80 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~--~ip~~~~~  155 (249)
                      |+|..+|++++.|++||+|+.                               .|+|+||..++...  ++  ++|+++++
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~-------------------------------~~~~aey~~v~~~~~~~~~~~~P~~~~~  132 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISG-------------------------------ITGWEEYSLIRSSDNQLRKIQLQDDIPL  132 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEe-------------------------------cCCcEEEEEEeccccceEEccCcCCCCH
Confidence            999999999999999999974                               37899999998753  54  45899988


Q ss_pred             h-hhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCEEecC
Q 025712          156 E-EGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKV  230 (249)
Q Consensus       156 ~-~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~vi~~  230 (249)
                      + +++.+. ...+||+++ +...+++|++|||+| +|++|++++|+||++|+ +++++++++++.++++ ++|+++++|+
T Consensus       133 ~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~  211 (348)
T PLN03154        133 SYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNY  211 (348)
T ss_pred             HHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEEC
Confidence            6 555554 678999988 457899999999998 59999999999999999 7999989999999997 7999999997


Q ss_pred             CCCcccHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWV  245 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~  245 (249)
                      ++. +++.+.+++++
T Consensus       212 ~~~-~~~~~~i~~~~  225 (348)
T PLN03154        212 KEE-PDLDAALKRYF  225 (348)
T ss_pred             CCc-ccHHHHHHHHC
Confidence            642 36767666553

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=7.5e-27  Score=203.19  Aligned_cols=189  Identities=22%  Similarity=0.268  Sum_probs=160.7

Q ss_pred             CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEcc
Q 025712           23 IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP  102 (249)
Q Consensus        23 ~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~  102 (249)
                      ++.++++++|.|+|+++||+|||+++++|+.|...+.+...   ...+|.++|+|++|+|+++|++++.+++||+|+.+.
T Consensus        14 ~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   90 (336)
T TIGR02817        14 PDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP---EAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAG   90 (336)
T ss_pred             cccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC---CCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcC
Confidence            45789999999999999999999999999999987766431   134678999999999999999999999999998641


Q ss_pred             CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCC--
Q 025712          103 GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP--  178 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~--  178 (249)
                      .                         ....|+|++|+.++.+.++++|+++++++++.++ ...+||+++ ...++.+  
T Consensus        91 ~-------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  145 (336)
T TIGR02817        91 D-------------------------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPV  145 (336)
T ss_pred             C-------------------------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCC
Confidence            0                         1136999999999999999999999999988666 567888887 5577766  


Q ss_pred             ---CCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          179 ---ETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       179 ---g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                         |+++||+| +|++|++++|+|+.+ |+ .++++.+++++.++++++|++++++++.   ++.+.+.+
T Consensus       146 ~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~i~~  211 (336)
T TIGR02817       146 AGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHSK---PLKAQLEK  211 (336)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECCC---CHHHHHHH
Confidence               99999998 699999999999998 99 7999988999999999999999998653   56666654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=6.5e-26  Score=198.35  Aligned_cols=206  Identities=25%  Similarity=0.335  Sum_probs=164.7

Q ss_pred             ceEEEEecCC---CeEEEE-ecCCCCCCCcEEEEEeEEecccchHhhHhccccc-----------------ccCCCCCce
Q 025712           15 NMAAWLLGIK---TLKIQP-YHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-----------------NFIVKKPMV   73 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~-~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-----------------~~~~~~p~~   73 (249)
                      |+++++.+++   .+.+.+ .+.|.+.+++|+|||.++++|++|+....+.+..                 ......|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            4566666543   466654 5777889999999999999999999887664321                 012457889


Q ss_pred             eccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC
Q 025712           74 IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV  153 (249)
Q Consensus        74 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  153 (249)
                      +|||++|+|+++|++++.+++||+|++.+...|++|..|..     |   ...+ ....|+|++|+.++...++++|+++
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~  151 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DYIG-SERDGGFAEYTVVPAENAYPVNSPL  151 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cccC-CCCCccceEEEEecHHHceeCCCCC
Confidence            99999999999999999999999999987777887765431     1   1122 1235999999999999999999999


Q ss_pred             Chhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++.+++.+. .+.++|+++....+++|+++||+|+ |++|++++++|+.+|+ .++++.+++ +.+.++++|++.+++.+
T Consensus       152 ~~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~  229 (350)
T cd08274         152 SDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRD  229 (350)
T ss_pred             CHHHHHhcccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCC
Confidence            998877665 6778898887788999999999985 9999999999999999 577777655 88899999998666543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.95  E-value=3.8e-26  Score=199.22  Aligned_cols=203  Identities=23%  Similarity=0.247  Sum_probs=165.6

Q ss_pred             ceEEEEecCCC----eEEEEecCCCCCC-CcEEEEEeEEecccchHhhHhcccccccC--CCCCceeccceEEEEEEecC
Q 025712           15 NMAAWLLGIKT----LKIQPYHLPTLGP-QDVKVRIKALGICGSDVHHFKTMRCANFI--VKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        15 ~~~~~~~~~~~----l~~~~~~~p~~~~-~eVlV~v~~~~i~~~D~~~~~~~~~~~~~--~~~p~~~G~e~~G~V~~vG~   87 (249)
                      |+++++.+++.    +.+++.|.|+|.+ ++|+||+.++++|+.|...+.+.......  ...|.++|+|++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            57888886653    8999999998887 99999999999999999887764321100  12577999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      +++.+++||+|++.+.                           ..|+|++|+.++.+.++++|+++++++++.+. ...+
T Consensus        81 ~v~~~~~Gd~V~~~~~---------------------------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~t  133 (341)
T cd08290          81 GVKSLKPGDWVIPLRP---------------------------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCT  133 (341)
T ss_pred             CCCCCCCCCEEEecCC---------------------------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHH
Confidence            9999999999986521                           25999999999999999999999998888765 5778


Q ss_pred             HHHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCCEEecCCCC-cccHHH
Q 025712          167 GVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGADETAKVSTD-IEMWGR  239 (249)
Q Consensus       167 a~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~~vi~~~~~-~~~~~~  239 (249)
                      +|+++. ...+.+++++||+| +|++|++++++|+..|+ .++++.+++    ++.+.++++|++++++++.. ..++.+
T Consensus       134 a~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  212 (341)
T cd08290         134 AYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATE  212 (341)
T ss_pred             HHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHH
Confidence            898884 46789999999998 69999999999999999 566666555    67888899999999987641 015666


Q ss_pred             HHHHHH
Q 025712          240 YKMQWV  245 (249)
Q Consensus       240 ~~~~~~  245 (249)
                      .+.+++
T Consensus       213 ~i~~~~  218 (341)
T cd08290         213 LLKSAP  218 (341)
T ss_pred             HHHHHc
Confidence            666543

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.95  E-value=1e-25  Score=194.75  Aligned_cols=202  Identities=23%  Similarity=0.296  Sum_probs=167.5

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |++++++++   ..+.+.+.+.|.+.+++|+|++.++++|+.|+....+..........|.++|+|++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            466777653   45778888888889999999999999999999887765422222456788999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++...                          ...|+|++|+.++...++++|+++++.+++.+. .+.++|..
T Consensus        81 ~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~  134 (324)
T cd08244          81 AWLGRRVVAHTG--------------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL  134 (324)
T ss_pred             CCCCCEEEEccC--------------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH
Confidence            999999987520                          136999999999999999999999999887655 56677665


Q ss_pred             HHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +...+++++++++|+| +|++|++++++|+..|+ .++++++++++.+.++++|++++++++.  .++.+.+.+++
T Consensus       135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  207 (324)
T cd08244         135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR--PDWPDQVREAL  207 (324)
T ss_pred             HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHc
Confidence            6778899999999998 79999999999999999 7899989999999999999999888665  56766666543

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=8.7e-26  Score=194.21  Aligned_cols=191  Identities=32%  Similarity=0.451  Sum_probs=160.9

Q ss_pred             ecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhH-hcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEE
Q 025712           21 LGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHF-KTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA   99 (249)
Q Consensus        21 ~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~-~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~   99 (249)
                      .+++.+++++++.|++.++||+||+.++++|+.|...+ .+.... ....+|.++|+|++|+|+.+|++++.+++||+|+
T Consensus         2 ~~~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~-~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWF-VYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCc-ccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            45678999999999999999999999999999998876 553211 1123578999999999999999999999999998


Q ss_pred             EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-cchHHHHHHHHHcCCCC
Q 025712          100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGP  178 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~~~~~~  178 (249)
                      ++                             ..|+|++|+.++.+.++++|+++  ..++.. .++.+++++++..++++
T Consensus        81 ~~-----------------------------~~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~  129 (312)
T cd08269          81 GL-----------------------------SGGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRA  129 (312)
T ss_pred             Ee-----------------------------cCCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCC
Confidence            75                             35899999999999999999988  233333 56778888888888999


Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++++|+|+|++|++++++|+..|+..++++.+++++.++++++|++++++.+.  .++.+.+.+++
T Consensus       130 ~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~~  194 (312)
T cd08269         130 GKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS--EAIVERVRELT  194 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC--cCHHHHHHHHc
Confidence            999999998999999999999999944888888999999999999999887554  67777777654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.94  E-value=2.2e-25  Score=193.29  Aligned_cols=199  Identities=24%  Similarity=0.260  Sum_probs=167.5

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++.+.++   ..+++++++.|.++++||+||+.++++|+.|+....+.+..   ...|.++|+|++|.|+.+|++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v~~vG~~v~~   78 (327)
T PRK10754          2 AKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP---PSLPSGLGTEAAGVVSKVGSGVKH   78 (327)
T ss_pred             ceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC---CCCCCccCcceEEEEEEeCCCCCC
Confidence            566666543   57999999999999999999999999999999877664321   235778999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++..                           ...|+|++|+.++.+.++++|+++++++++.+. ...+++.+
T Consensus        79 ~~~Gd~V~~~~---------------------------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~  131 (327)
T PRK10754         79 IKVGDRVVYAQ---------------------------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYL  131 (327)
T ss_pred             CCCCCEEEECC---------------------------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999997531                           135899999999999999999999998888554 56677877


Q ss_pred             HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +. ...+.+|++++|+| +|.+|++++++++.+|+ .+++++.++++.+.++++|++++++.+.  .++.+.+++++.
T Consensus       132 l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~  206 (327)
T PRK10754        132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE--ENIVERVKEITG  206 (327)
T ss_pred             HHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC--CcHHHHHHHHcC
Confidence            74 47789999999996 79999999999999999 6888889999999999999999987664  677777777654

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.94  E-value=8.7e-26  Score=197.26  Aligned_cols=203  Identities=30%  Similarity=0.364  Sum_probs=167.5

Q ss_pred             ceEEEEecC--CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |+++++..+  ..+++++++.|.++++||+||+.++++|+.|+....+..    ....|.++|+|++|+|+.+|++++.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~   76 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF----IPSYPAILGCDFAGTVVEVGSGVTRF   76 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc----ccCCCceeeeeeeEEEEEeCCCcCcC
Confidence            567888877  789999999999999999999999999999987664432    12357789999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      ++||+|++++...|+                    ....+|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++
T Consensus        77 ~~Gd~V~~~~~~~~~--------------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l  136 (339)
T cd08249          77 KVGDRVAGFVHGGNP--------------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALAL  136 (339)
T ss_pred             CCCCEEEEEeccccC--------------------CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHH
Confidence            999999976422111                    11257999999999999999999999999888766 678889887


Q ss_pred             H-HcCC----------CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHH
Q 025712          172 R-RANV----------GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR  239 (249)
Q Consensus       172 ~-~~~~----------~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~  239 (249)
                      . ..+.          .++++++|+| +|.+|++++++++++|+ .++.+. ++++.+.++++|+++++++..  .++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~--~~~~~  212 (339)
T cd08249         137 FQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD--PDVVE  212 (339)
T ss_pred             hccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC--chHHH
Confidence            4 3433          7899999998 58999999999999999 677776 568999999999999998765  67777


Q ss_pred             HHHHHH
Q 025712          240 YKMQWV  245 (249)
Q Consensus       240 ~~~~~~  245 (249)
                      .+++++
T Consensus       213 ~l~~~~  218 (339)
T cd08249         213 DIRAAT  218 (339)
T ss_pred             HHHHhc
Confidence            776543

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=195.70  Aligned_cols=190  Identities=25%  Similarity=0.345  Sum_probs=155.6

Q ss_pred             CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccccc-CCCCCceeccceEEE---EEEec-CCCCCCCCCCeEE
Q 025712           25 TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANF-IVKKPMVIGHECAGI---IEEVG-SEVKSLEVGDRVA   99 (249)
Q Consensus        25 ~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~~~G~e~~G~---V~~vG-~~v~~~~~Gd~V~   99 (249)
                      .+..++.+.|.|.+++++|++.++++|+.|..++.+.+.... ...+|.+++.++.|.   +...| ..+..+..||.+.
T Consensus        19 ~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~   98 (347)
T KOG1198|consen   19 VLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVV   98 (347)
T ss_pred             eEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEe
Confidence            455667999999999999999999999999999888653221 125775555555444   44555 3445567777665


Q ss_pred             EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH-Hc---
Q 025712          100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RA---  174 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~---  174 (249)
                      ..                            ...|+|+||+.++...++++|+++++++|++++ .+.+||.++. ..   
T Consensus        99 ~~----------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~  150 (347)
T KOG1198|consen   99 AF----------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGK  150 (347)
T ss_pred             ec----------------------------cCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccc
Confidence            43                            367999999999999999999999999999887 6889999984 46   


Q ss_pred             ---CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          175 ---NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       175 ---~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                         +.++|++|||+| +|+||++++|+|++.|+ ..+++.+++++.++++++||++++||++  +++.+.+.+.+
T Consensus       151 ~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~--~~~~e~~kk~~  222 (347)
T KOG1198|consen  151 RSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD--ENVVELIKKYT  222 (347)
T ss_pred             cccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC--HHHHHHHHhhc
Confidence               699999999997 79999999999999996 5666668999999999999999999998  88988888754

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=2.3e-25  Score=187.13  Aligned_cols=192  Identities=40%  Similarity=0.697  Sum_probs=164.2

Q ss_pred             cEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCC
Q 025712           40 DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNL  119 (249)
Q Consensus        40 eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~  119 (249)
                      ||+|+|.++++|+.|.....+.+.  ....+|.++|+|++|+|+++|++++.+++||+|++.+...|++|.+|..    +
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~   74 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----L   74 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----h
Confidence            689999999999999988877542  1235678999999999999999999999999999999999999999997    6


Q ss_pred             CcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-cchHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHH
Q 025712          120 CPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLA  197 (249)
Q Consensus       120 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~l  197 (249)
                      |......+ ....|+|++|+.++.+.++++|+++++.+++.+ ..+.+|++++.. ..+.++++++|+|+|++|++++++
T Consensus        75 ~~~~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~  153 (271)
T cd05188          75 CPGGGILG-EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQL  153 (271)
T ss_pred             CCCCCEec-cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence            76555433 346799999999999999999999999999877 478899999865 445899999999976699999999


Q ss_pred             HHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712          198 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK  241 (249)
Q Consensus       198 a~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~  241 (249)
                      ++..|. +++++++++++.++++++|+++++++..  .++.+.+
T Consensus       154 a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~  194 (271)
T cd05188         154 AKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEEL  194 (271)
T ss_pred             HHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc--CCHHHHH
Confidence            999998 8999999999999999999999887665  4554444

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.94  E-value=4.8e-25  Score=191.22  Aligned_cols=199  Identities=23%  Similarity=0.297  Sum_probs=166.7

Q ss_pred             cceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           14 QNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        14 ~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +||++++..++   .+.+++.+.|.+.++||+|||.++++|+.|.....+....  ....|.++|+|++|+|+++|++++
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~   78 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDVK   78 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCCC
Confidence            47788888654   5778888888899999999999999999998877664321  134467899999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      .+++||+|+.+.                            .+|+|++|+.++.+.++++|+++++.+++.+. .+.++++
T Consensus        79 ~~~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~  130 (334)
T PTZ00354         79 RFKEGDRVMALL----------------------------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQ  130 (334)
T ss_pred             CCCCCCEEEEec----------------------------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999998641                            35899999999999999999999988887554 6778898


Q ss_pred             HHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCccc-HHHHHHHHH
Q 025712          170 ACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM-WGRYKMQWV  245 (249)
Q Consensus       170 ~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-~~~~~~~~~  245 (249)
                      ++.. ..+.++++++|+| +|++|+++++++++.|+ .++.+.+++++.++++++|++++++...  .+ +.+.+++++
T Consensus       131 ~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~  206 (334)
T PTZ00354        131 LLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD--EEGFAPKVKKLT  206 (334)
T ss_pred             HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hhHHHHHHHHHh
Confidence            8854 7889999999998 69999999999999999 5666888999999999999999998764  33 667776655

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=9.8e-25  Score=189.27  Aligned_cols=220  Identities=30%  Similarity=0.374  Sum_probs=176.8

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..   +..+++++.+.|.+.++|++|++.++++|+.|.....+.+...  ...|.++|+|++|+|+.+|+++.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~   78 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPP--VKDPLIPLSDGAGEVVAVGEGVTR   78 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCC--CCCCcccccceeEEEEEeCCCCcC
Confidence            56777773   4678888988888999999999999999999998876644221  246789999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++.+...|+.      +.+.+|......+ ....|+|++|+.++.+.++++|+++++.+++.+. ...+||++
T Consensus        79 ~~~Gd~V~~~~~~~~~~------~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~  151 (336)
T cd08276          79 FKVGDRVVPTFFPNWLD------GPPTAEDEASALG-GPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNA  151 (336)
T ss_pred             CCCCCEEEEeccccccc------ccccccccccccc-cccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHH
Confidence            99999999876544433      2333443332222 2357899999999999999999999998888665 57788888


Q ss_pred             HH-HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +. ...+++|++++|+|+|++|+++++++++.|+ +++.++.++++.+.++++|++++++.+.+ +++.+.+++++
T Consensus       152 l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~  225 (336)
T cd08276         152 LFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTT-PDWGEEVLKLT  225 (336)
T ss_pred             HHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCcc-cCHHHHHHHHc
Confidence            74 4788999999999999999999999999999 68888899999999999999999876541 45666666654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.94  E-value=9.4e-25  Score=189.46  Aligned_cols=194  Identities=23%  Similarity=0.278  Sum_probs=161.8

Q ss_pred             ceEEEEecC-----CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           15 NMAAWLLGI-----KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        15 ~~~~~~~~~-----~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      |+++++.++     +.+++++.+.|.+.++|++|||.++++|+.|+....+.....  ..+|.++|+|++|+|+.+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~--~~~p~~~g~e~~G~v~~vG~~v   79 (329)
T cd08250           2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG--VKPPFDCGFEGVGEVVAVGEGV   79 (329)
T ss_pred             ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC--CCCCcccCceeEEEEEEECCCC
Confidence            677777743     358899999999999999999999999999998776643211  3578899999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH  169 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~  169 (249)
                      +.+++||+|++.                             ..|+|++|+.++.+.++++|++. .+.+++...+.++|+
T Consensus        80 ~~~~~Gd~V~~~-----------------------------~~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~  129 (329)
T cd08250          80 TDFKVGDAVATM-----------------------------SFGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASI  129 (329)
T ss_pred             CCCCCCCEEEEe-----------------------------cCcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHH
Confidence            999999999865                             46999999999999999999973 233334456789998


Q ss_pred             HHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          170 ACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       170 ~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      ++.. ..+.++++++|+| +|.+|++++++++..|+ .++++.+++++.+.++++|++.+++.+.  .++.+.+.+
T Consensus       130 ~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~  202 (329)
T cd08250         130 ALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT--EDLGEVLKK  202 (329)
T ss_pred             HHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC--ccHHHHHHH
Confidence            8844 6889999999998 79999999999999999 6888888999999999999998887654  555555544

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.94  E-value=7.4e-25  Score=189.46  Aligned_cols=191  Identities=19%  Similarity=0.231  Sum_probs=157.1

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++.+++   .+++++.|.|.+.++||+||+.++++|++|+..+.|...  .....|.++|+|++|+|+++  +++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~v~~~--~~~~   76 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGG--VTRNYPHTPGIDAAGTVVSS--DDPR   76 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCC--CCCCCCCccCcccEEEEEEe--CCCC
Confidence            5778888776   799999999999999999999999999999988776531  12345789999999999999  4567


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++.+.                     ..+ ....|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus        77 ~~~Gd~V~~~~~---------------------~~g-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~  134 (325)
T cd05280          77 FREGDEVLVTGY---------------------DLG-MNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALS  134 (325)
T ss_pred             CCCCCEEEEccc---------------------ccC-CCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHH
Confidence            999999987521                     001 1246999999999999999999999999988766 46677777


Q ss_pred             HHH---cCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          171 CRR---ANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       171 l~~---~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++.   .... .+++++|+| +|++|++++++|+.+|+ .++++++++++.+.++++|++++++.+.
T Consensus       135 l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  200 (325)
T cd05280         135 VHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED  200 (325)
T ss_pred             HHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh
Confidence            643   2335 357999998 59999999999999999 6898999999999999999999987653

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.1e-24  Score=186.97  Aligned_cols=179  Identities=24%  Similarity=0.269  Sum_probs=153.6

Q ss_pred             ceEEEEec--CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLG--IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~--~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |+++++.+  |..+++++.+.|.+.++||+||+.++++|+.|......       ...|.++|+|++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~-------~~~~~~~g~e~~G~v~~~G~~v~~~   73 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAE-------RPDGAVPGWDAAGVVERAAADGSGP   73 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhcc-------CCCCCcccceeEEEEEEeCCCCCCC
Confidence            35566654  56788889999999999999999999999999876542       2346789999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      ++||+|+.+                            ...|+|++|+.++.+.++++|+++++.+++.+. .+.+||+++
T Consensus        74 ~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~  125 (305)
T cd08270          74 AVGARVVGL----------------------------GAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRAL  125 (305)
T ss_pred             CCCCEEEEe----------------------------cCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHH
Confidence            999999865                            136999999999999999999999999988766 577999988


Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      ......+|++++|+| .|++|++++++++..|+ .++.+++++++.+.++++|++.+++
T Consensus       126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  183 (305)
T cd08270         126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVV  183 (305)
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            665455699999998 59999999999999999 7899988999999999999876653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.94  E-value=1.6e-24  Score=187.56  Aligned_cols=191  Identities=20%  Similarity=0.217  Sum_probs=155.3

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++.+++   .+++++.|.|+|+++||+||+.++++|+.|.....+.+.  .....|.++|+|++|+|++  ++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~   76 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGG--IVRTFPLVPGIDLAGTVVE--SSSPR   76 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCcc--ccCCCCCccccceEEEEEe--CCCCC
Confidence            5677777655   689999999999999999999999999999987765431  1124578899999999998  77778


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+++..   .                  . +....|+|++|+.++.+.++++|+++++++++.+. .+.+++.+
T Consensus        77 ~~~Gd~V~~~~~---~------------------~-~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~  134 (324)
T cd08288          77 FKPGDRVVLTGW---G------------------V-GERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLC  134 (324)
T ss_pred             CCCCCEEEECCc---c------------------C-CCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHH
Confidence            999999987520   0                  0 01136899999999999999999999999888666 35566655


Q ss_pred             HH---HcCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          171 CR---RANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       171 l~---~~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.   ..... ++++++|+| +|++|++++|+|+++|+ .++++++++++.++++++|+++++++++
T Consensus       135 ~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  200 (324)
T cd08288         135 VMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE  200 (324)
T ss_pred             HHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch
Confidence            43   44555 678999998 59999999999999999 7888888999999999999999998764

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.93  E-value=1.1e-24  Score=180.43  Aligned_cols=193  Identities=16%  Similarity=0.111  Sum_probs=158.2

Q ss_pred             ceEEEEe-------cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEec-
Q 025712           15 NMAAWLL-------GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVG-   86 (249)
Q Consensus        15 ~~~~~~~-------~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG-   86 (249)
                      ++++++.       .+++|++++.+.|.|+++|||||++|.+++|.-    ++.......+..|+-+|...+|.++... 
T Consensus         9 ~~~~~la~rP~g~p~~d~F~lee~~vp~p~~GqvLl~~~ylS~DPym----Rgrm~d~~SY~~P~~lG~~~~gg~V~~Vv   84 (340)
T COG2130           9 NRRIVLASRPEGAPVPDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYM----RGRMSDAPSYAPPVELGEVMVGGTVAKVV   84 (340)
T ss_pred             hheeeeccCCCCCCCCCCceeEeccCCCCCcCceEEEEEEeccCHHH----eecccCCcccCCCcCCCceeECCeeEEEE
Confidence            4566655       246899999999999999999999999998833    3322222235678888877766555443 


Q ss_pred             -CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC---Chhhhcccc
Q 025712           87 -SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV---SLEEGAMCE  162 (249)
Q Consensus        87 -~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~---~~~~aa~~~  162 (249)
                       ++.+.|++||.|+.                               ..+|++|..++.+.+.++++..   ++....+-+
T Consensus        85 ~S~~~~f~~GD~V~~-------------------------------~~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130          85 ASNHPGFQPGDIVVG-------------------------------VSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             ecCCCCCCCCCEEEe-------------------------------cccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence             55778999999983                               4799999999999999998653   444455667


Q ss_pred             chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHH
Q 025712          163 PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGR  239 (249)
Q Consensus       163 ~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~  239 (249)
                      +..|||.+| +.+..++|++++|.| +|+||..+.|+||..|+ +||++..+++|.+++++ +|.+.+|||+.  +++.+
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~  210 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQ  210 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHH
Confidence            888999998 558999999999997 79999999999999999 89999999999999998 99999999998  69999


Q ss_pred             HHHHHH
Q 025712          240 YKMQWV  245 (249)
Q Consensus       240 ~~~~~~  245 (249)
                      ++.+.+
T Consensus       211 ~L~~a~  216 (340)
T COG2130         211 ALKEAC  216 (340)
T ss_pred             HHHHHC
Confidence            888754

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.93  E-value=2e-24  Score=188.86  Aligned_cols=198  Identities=25%  Similarity=0.350  Sum_probs=158.8

Q ss_pred             ceEEEEecCCC----eEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhccccc-------c-----cCCCCCceeccc
Q 025712           15 NMAAWLLGIKT----LKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCA-------N-----FIVKKPMVIGHE   77 (249)
Q Consensus        15 ~~~~~~~~~~~----l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~-------~-----~~~~~p~~~G~e   77 (249)
                      |+++++.+++.    ++++|.+.|.| +++||+|||.++++|++|.....+...+       .     .....|.++|+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            45666665443    88999999999 5999999999999999999887763210       0     023568899999


Q ss_pred             eEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhh
Q 025712           78 CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE  157 (249)
Q Consensus        78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  157 (249)
                      ++|+|+.+|++++++++||+|++.+..                         ...|+|++|+.++.+.++++|+++++.+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~-------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~  135 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP-------------------------WSQGTHAEYVVVPENEVSKKPKNLSHEE  135 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC-------------------------CCCccceeEEEecHHHeecCCCCCCHHH
Confidence            999999999999999999999875310                         1369999999999999999999999988


Q ss_pred             hcccc-chHHHHHHHHH-cCCC----CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          158 GAMCE-PLSVGVHACRR-ANVG----PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       158 aa~~~-~~~~a~~~l~~-~~~~----~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      ++.+. ...++|.++.. ..+.    +|++++|+| +|++|++++++++.+|+ .++++.++ ++.+.++++|++++++.
T Consensus       136 aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~  213 (350)
T cd08248         136 AASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDY  213 (350)
T ss_pred             HhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEEC
Confidence            88665 57788888744 5554    499999998 69999999999999999 67777654 67888899999998876


Q ss_pred             CCCcccHHHHH
Q 025712          231 STDIEMWGRYK  241 (249)
Q Consensus       231 ~~~~~~~~~~~  241 (249)
                      ..  .++.+.+
T Consensus       214 ~~--~~~~~~l  222 (350)
T cd08248         214 NN--EDFEEEL  222 (350)
T ss_pred             CC--hhHHHHH
Confidence            54  4554444

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.93  E-value=1.7e-24  Score=187.08  Aligned_cols=189  Identities=26%  Similarity=0.287  Sum_probs=161.4

Q ss_pred             CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCc
Q 025712           25 TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI  104 (249)
Q Consensus        25 ~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  104 (249)
                      .+.+++.+.|.+.+++|+|||.++++|+.|...+.+....  ....|.++|+|++|+|+.+|++++.+++||+|++.+  
T Consensus        13 ~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~--   88 (323)
T cd05282          13 VLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG--   88 (323)
T ss_pred             eEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC--
Confidence            6888899999999999999999999999998877664321  234678999999999999999999999999999752  


Q ss_pred             CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeE
Q 025712          105 SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNV  182 (249)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~v  182 (249)
                                                ..|+|++|+.++.+.++++|+++++.+++.+. ...++|.++ ....+.+++++
T Consensus        89 --------------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~v  142 (323)
T cd05282          89 --------------------------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWV  142 (323)
T ss_pred             --------------------------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEE
Confidence                                      15899999999999999999999988887654 567788777 44678899999


Q ss_pred             EEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          183 MIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +|+| +|.+|++++++|+.+|+ .++++.+++++.+.++++|++++++++.  .++.+.+.+++.
T Consensus       143 lI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~  204 (323)
T cd05282         143 IQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKEATG  204 (323)
T ss_pred             EEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHHHhc
Confidence            9998 58999999999999999 6888888999999999999999998765  567777776653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.93  E-value=4.1e-24  Score=185.10  Aligned_cols=191  Identities=17%  Similarity=0.234  Sum_probs=153.0

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.+++   .+.+++.|.|.|.++||+||+.++++|+.|.....+..  .....+|.++|+|++|+|++.|  +..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~~~g~e~~G~V~~~~--~~~   76 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGG--KIVKRYPFIPGIDLAGTVVESN--DPR   76 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCc--cccCCCCcCcccceeEEEEEcC--CCC
Confidence            4677777554   48899999999999999999999999999986554211  1123458899999999999954  567


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~~  170 (249)
                      +++||+|++.+..                     .+ ....|+|++|+.++.+.++++|+++++++++.+.. ..+++.+
T Consensus        77 ~~~Gd~V~~~~~~---------------------~~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~  134 (326)
T cd08289          77 FKPGDEVIVTSYD---------------------LG-VSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALS  134 (326)
T ss_pred             CCCCCEEEEcccc---------------------cC-CCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHH
Confidence            9999999875310                     01 12469999999999999999999999999887664 5577766


Q ss_pred             HHH---cCC-CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          171 CRR---ANV-GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       171 l~~---~~~-~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++.   ... ..+++++|+| +|++|++++|+|+.+|+ .++++++++++.++++++|++++++.+.
T Consensus       135 l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~  200 (326)
T cd08289         135 IHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE  200 (326)
T ss_pred             HHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh
Confidence            633   333 3478999998 59999999999999999 7888889999999999999999987654

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.93  E-value=6.4e-24  Score=183.77  Aligned_cols=190  Identities=19%  Similarity=0.278  Sum_probs=153.4

Q ss_pred             eEEEEe---cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           16 MAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        16 ~~~~~~---~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |++++.   +|..++++++|.|.+.++||+||+.++++|+.|.....+.+.  .....|.++|+|++|+|+.  .++..+
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~~   76 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGG--VVRSYPMIPGIDAAGTVVS--SEDPRF   76 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCC--CCCCCCccceeeeEEEEEe--cCCCCC
Confidence            345555   334789999999999999999999999999999988776531  1134588999999999988  566789


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~~l  171 (249)
                      ++||+|++++..                  +    +....|+|++|+.++.+.++++|+++++.+++.+.. ..+++.++
T Consensus        77 ~~Gd~V~~~~~~------------------~----~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~  134 (323)
T TIGR02823        77 REGDEVIVTGYG------------------L----GVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSV  134 (323)
T ss_pred             CCCCEEEEccCC------------------C----CCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            999999875310                  0    012468999999999999999999999998887664 55666655


Q ss_pred             ---HHcCCCCCC-eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          172 ---RRANVGPET-NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       172 ---~~~~~~~g~-~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                         ....+.+++ +++|+| +|.+|++++++|+.+|+ .++++.+++++.+.++++|++++++.++
T Consensus       135 ~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  199 (323)
T TIGR02823       135 MALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED  199 (323)
T ss_pred             HHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc
Confidence               334578898 999998 59999999999999999 6777778888889999999999887653

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.93  E-value=1.1e-23  Score=181.13  Aligned_cols=203  Identities=31%  Similarity=0.365  Sum_probs=168.1

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..+   ..+.+.+++.|.+.+++|+|++.++++|+.|.....+....  ....|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~   78 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVDG   78 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCCC
Confidence            356666543   45888999999999999999999999999998877654321  2457889999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++.+..                       .....|++++|+.++.+.++++|+++++.+++.+. .+.+++++
T Consensus        79 ~~~Gd~v~~~~~~-----------------------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~  135 (325)
T cd08253          79 LKVGDRVWLTNLG-----------------------WGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRA  135 (325)
T ss_pred             CCCCCEEEEeccc-----------------------cCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence            9999999876310                       00136899999999999999999999998887665 67788888


Q ss_pred             HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +.. .++.+|++++|+| +|++|++++++++..|+ .++++++++++.+.++++|++++++.+.  +++.+.+.+++
T Consensus       136 l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  209 (325)
T cd08253         136 LFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA--EDLADRILAAT  209 (325)
T ss_pred             HHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHHHHc
Confidence            754 8889999999998 69999999999999999 7888888999999999999999987665  56766666554

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.93  E-value=1.2e-23  Score=180.64  Aligned_cols=198  Identities=26%  Similarity=0.333  Sum_probs=165.9

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.+   +..+++++.+.|.+.+++|+||+.++++|+.|.....+.+.  ....+|.++|+|++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~vg~~~~~   78 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYP--PPPGASDILGLEVAGVVVAVGPGVTG   78 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCC--CCCCCCCcccceeEEEEEeeCCCCCC
Confidence            56777776   45688888888888999999999999999999887765431  12346789999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+.+                            ...|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus        79 ~~~Gd~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~  130 (323)
T cd05276          79 WKVGDRVCAL----------------------------LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQN  130 (323)
T ss_pred             CCCCCEEEEe----------------------------cCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHH
Confidence            9999999865                            134899999999999999999999988887554 67788888


Q ss_pred             HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +. ...+.++++++|+| .|++|++++++++..|+ .++.+++++++.+.++++|++.+++...  .++.+.+.+++
T Consensus       131 ~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  204 (323)
T cd05276         131 LFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT--EDFAEEVKEAT  204 (323)
T ss_pred             HHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc--hhHHHHHHHHh
Confidence            74 47789999999998 69999999999999999 6888888999999999999988887664  56666665543

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=1.1e-23  Score=181.34  Aligned_cols=199  Identities=26%  Similarity=0.323  Sum_probs=160.8

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..+   ..+.+.+.+.|.+.++||+||+.++++|+.|+....+...   ....|.++|+|++|+|+++|.  ..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~--~~   75 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP---SVKFPRVLGIEAVGEVEEAPG--GT   75 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCccccceeEEEEEEecC--CC
Confidence            355666544   3577888888889999999999999999999987766431   134578899999999999995  57


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+++...              +        +....|+|++|+.++...++++|+++++.+++.+. .+.+||.+
T Consensus        76 ~~~Gd~V~~~~~~--------------~--------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~  133 (320)
T cd08243          76 FTPGQRVATAMGG--------------M--------GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGS  133 (320)
T ss_pred             CCCCCEEEEecCC--------------C--------CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHH
Confidence            9999999875210              0        01245899999999999999999999998877555 67889988


Q ss_pred             HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      +.. ..+.+|++++|+| +|++|++++|+|+.+|+ .++++.+++++.+.++++|++++++. .  .++.+.++++
T Consensus       134 l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~--~~~~~~i~~~  205 (320)
T cd08243         134 LFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D--GAIAEQLRAA  205 (320)
T ss_pred             HHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C--ccHHHHHHHh
Confidence            854 6789999999998 59999999999999999 68888889999999999999988753 2  4566666544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.93  E-value=1e-23  Score=183.37  Aligned_cols=196  Identities=21%  Similarity=0.275  Sum_probs=160.8

Q ss_pred             ceEEEEecCCC------eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           15 NMAAWLLGIKT------LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        15 ~~~~~~~~~~~------l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      |++.++.+++.      +.+++++.|.+.+++|+||+.++++|+.|+..+.+...   ....|.++|+|++|+|+.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~   77 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP---VPGQPKILGWDASGVVEAVGSE   77 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC---CCCCCcccccceEEEEEEcCCC
Confidence            46777776643      66678888889999999999999999999887665331   1345778999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      +..+++||+|.....                         ....|+|++|+.++.+.++++|+++++.+++.+. ...++
T Consensus        78 v~~~~~Gd~V~~~~~-------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta  132 (336)
T cd08252          78 VTLFKVGDEVYYAGD-------------------------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTA  132 (336)
T ss_pred             CCCCCCCCEEEEcCC-------------------------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHH
Confidence            999999999986410                         0146899999999999999999999998888665 45678


Q ss_pred             HHHH-HHcCCCC-----CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHH
Q 025712          168 VHAC-RRANVGP-----ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR  239 (249)
Q Consensus       168 ~~~l-~~~~~~~-----g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~  239 (249)
                      |.++ +.....+     +++++|+| +|++|++++++++.+| + .++++++++++.++++++|++++++...   ++.+
T Consensus       133 ~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~  208 (336)
T cd08252         133 WEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHHQ---DLAE  208 (336)
T ss_pred             HHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCCc---cHHH
Confidence            8776 5566776     99999998 6999999999999999 7 7899988999999999999999987652   4444


Q ss_pred             HHH
Q 025712          240 YKM  242 (249)
Q Consensus       240 ~~~  242 (249)
                      .+.
T Consensus       209 ~i~  211 (336)
T cd08252         209 QLE  211 (336)
T ss_pred             HHH
Confidence            443

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=3.6e-23  Score=178.54  Aligned_cols=199  Identities=26%  Similarity=0.328  Sum_probs=165.6

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++.+|+   .+++++.+.|++.+++|+||+.++++|+.|+..+.+....   ...|.++|+|++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~---~~~~~~~g~e~~G~v~~~G~~~~~   77 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA---WSYPHVPGVDGAGVVVAVGAKVTG   77 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC---CCCCcccccceEEEEEEeCCCCCc
Confidence            5778888888   8999999999999999999999999999998877654311   123678999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|++.+.                         ....|+|++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus        78 ~~~Gd~V~~~~~-------------------------~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~  132 (325)
T cd08271          78 WKVGDRVAYHAS-------------------------LARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQA  132 (325)
T ss_pred             CCCCCEEEeccC-------------------------CCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH
Confidence            999999987521                         1136899999999999999999999998887654 67788888


Q ss_pred             H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + +...+.+|++++|+| .|++|++++++++..|+ .++.+. ++++.+.++++|++.+++...  .++.+.+.+++
T Consensus       133 ~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  205 (325)
T cd08271         133 LFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND--EDVCERIKEIT  205 (325)
T ss_pred             HHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC--ccHHHHHHHHc
Confidence            7 447889999999998 48999999999999999 677665 678888899999998887654  56666666543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.92  E-value=2.9e-23  Score=179.97  Aligned_cols=187  Identities=17%  Similarity=0.095  Sum_probs=151.5

Q ss_pred             CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEcc
Q 025712           23 IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP  102 (249)
Q Consensus        23 ~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~  102 (249)
                      ++.+++++++.|.+.+++|+||+.++++|+.|.....+......+...+.++|+|++|+|+++|++  .+++||+|+.+ 
T Consensus        17 ~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~-   93 (329)
T cd05288          17 PDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGF-   93 (329)
T ss_pred             ccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEecc-
Confidence            357999999999999999999999999999887655442111111223567899999999999964  79999999743 


Q ss_pred             CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecC-CceEECCCCCC--hhhh-c-cccchHHHHHHHH-HcCC
Q 025712          103 GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVS--LEEG-A-MCEPLSVGVHACR-RANV  176 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip~~~~--~~~a-a-~~~~~~~a~~~l~-~~~~  176 (249)
                                                    ++|++|+.++. +.++++|++++  +..+ + +...+.++|+++. ...+
T Consensus        94 ------------------------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~  143 (329)
T cd05288          94 ------------------------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKP  143 (329)
T ss_pred             ------------------------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCC
Confidence                                          58999999999 99999999985  3333 3 3446778998874 4678


Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .++++++|+| +|++|++++++++..|+ .++++++++++.+.+++ +|+++++++++  .++.+++.+++
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~v~~~~  211 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT--PDLAEALKEAA  211 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC--hhHHHHHHHhc
Confidence            8999999998 79999999999999999 78888889999999988 99999998775  56777766553

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=99.92  E-value=2.6e-23  Score=177.36  Aligned_cols=182  Identities=24%  Similarity=0.380  Sum_probs=157.0

Q ss_pred             CCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccc
Q 025712           33 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLC  112 (249)
Q Consensus        33 ~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~  112 (249)
                      .|.+.+++++||+.++++|+.|+..+.+.+..  ...+|.++|+|++|+|+++|++++++++||+|+++..         
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG---------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC---------
Confidence            57789999999999999999999888765421  2356889999999999999999999999999987521         


Q ss_pred             cCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEc-CChH
Q 025712          113 KAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPI  190 (249)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G-~g~v  190 (249)
                                       ...|+|++|+.++.+.++++|+++++.+++.+. ...++|.+++...+++|++++|+| +|++
T Consensus        71 -----------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~  133 (303)
T cd08251          71 -----------------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGT  133 (303)
T ss_pred             -----------------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHH
Confidence                             146999999999999999999999999888665 577889888888899999999996 7999


Q ss_pred             HHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       191 G~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      |++++|+++++|+ .++++.+++++.+.++++|++++++...  .++.+.+.+++
T Consensus       134 g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~  185 (303)
T cd08251         134 GLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLT  185 (303)
T ss_pred             HHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHc
Confidence            9999999999999 7888988999999999999999998765  56777776654

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=5.6e-23  Score=177.12  Aligned_cols=201  Identities=29%  Similarity=0.354  Sum_probs=164.5

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++.+++   .+++++.+.|.+.+++|+|++.++++|+.|.....+...  .....|.++|+|++|+|+.+|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~~G~~~~~   78 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA--ARPPLPAILGCDVAGVVEAVGEGVTR   78 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC--CCCCCCcccccceeEEEEEeCCCCCC
Confidence            5778887654   488888888889999999999999999999887766432  11335788999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|..+..                       +.....|+|++|+.++...++++|+++++..++.+. ...+++++
T Consensus        79 ~~~Gd~V~~~~~-----------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~  135 (326)
T cd08272          79 FRVGDEVYGCAG-----------------------GLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEG  135 (326)
T ss_pred             CCCCCEEEEccC-----------------------CcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHH
Confidence            999999986520                       000136899999999999999999999998887665 56788877


Q ss_pred             H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + +..++.++++++|+| +|.+|++++++++.+|+ .++.++++ ++.++++++|++.+++...  + +.+.+.+++
T Consensus       136 l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~-~~~~~~~~~  207 (326)
T cd08272         136 LVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE--T-VVEYVAEHT  207 (326)
T ss_pred             HHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch--h-HHHHHHHhc
Confidence            6 568899999999998 79999999999999999 68888777 8999999999998887654  4 666666544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.91  E-value=1.6e-22  Score=173.31  Aligned_cols=187  Identities=30%  Similarity=0.368  Sum_probs=158.9

Q ss_pred             CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712           24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG  103 (249)
Q Consensus        24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  103 (249)
                      ..+.+.+.+.+.+.++||+|+|.++++|+.|+....+.+.    ..+|.++|+|++|+|+.+|++++.+++||+|+++. 
T Consensus        12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~-   86 (320)
T cd05286          12 EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP----LPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG-   86 (320)
T ss_pred             cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCC----CCCCccCCcceeEEEEEECCCCCCCCCCCEEEEec-
Confidence            3577778887788999999999999999999987766432    24577899999999999999999999999998651 


Q ss_pred             cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCe
Q 025712          104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN  181 (249)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~  181 (249)
                                                 ..|+|++++.++.+.++++|+++++.+++.+. ...+++.++ +...+.+|++
T Consensus        87 ---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~  139 (320)
T cd05286          87 ---------------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDT  139 (320)
T ss_pred             ---------------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCE
Confidence                                       25899999999999999999999988887554 566788777 4578899999


Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++|+| +|++|++++++++.+|+ .+++++.++++.+.++++|++++++...  .++.+.+.+++
T Consensus       140 vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  201 (320)
T cd05286         140 VLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD--EDFVERVREIT  201 (320)
T ss_pred             EEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc--hhHHHHHHHHc
Confidence            99998 69999999999999999 7888888999999999999999887654  56777776654

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.91  E-value=2.1e-22  Score=176.57  Aligned_cols=191  Identities=23%  Similarity=0.325  Sum_probs=148.6

Q ss_pred             eEEEEecCC-CeEEEEecCCCC---CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC-
Q 025712           16 MAAWLLGIK-TLKIQPYHLPTL---GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK-   90 (249)
Q Consensus        16 ~~~~~~~~~-~l~~~~~~~p~~---~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-   90 (249)
                      +++++.+++ .+++++++.|.|   .+++|+||+.++++|+.|...+.+..  ......|.++|+|++|+|+++|++++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~--~~~~~~~~~~g~e~~G~V~~vG~~v~~   79 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYT--FHFKVKEKGLGRDYSGVIVKVGSNVAS   79 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccc--cccccCCCccCceeEEEEEEeCccccc
Confidence            355666553 566666666554   99999999999999999987764311  11112377899999999999999998 


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC----ceEECCCCCChhhhcccc-chH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCE-PLS  165 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~aa~~~-~~~  165 (249)
                      .+++||+|+++....                       ....|+|++|+.++..    .++++|+++++.+++.+. ...
T Consensus        80 ~~~~Gd~V~~~~~~~-----------------------~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~  136 (352)
T cd08247          80 EWKVGDEVCGIYPHP-----------------------YGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLG  136 (352)
T ss_pred             CCCCCCEEEEeecCC-----------------------CCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHH
Confidence            899999998753210                       0136899999999987    789999999999988765 466


Q ss_pred             HHHHHHHHc--CCCCCCeEEEEc-CChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          166 VGVHACRRA--NVGPETNVMIMG-SGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       166 ~a~~~l~~~--~~~~g~~vlI~G-~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++|+++...  .+++|++++|+| +|++|++++++|+..|. +.++.+. ++++.+.++++|++++++.+.
T Consensus       137 ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~  206 (352)
T cd08247         137 TAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA  206 (352)
T ss_pred             HHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC
Confidence            888888554  689999999998 57999999999999854 3567775 455566889999999998765

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=1.4e-22  Score=175.78  Aligned_cols=183  Identities=26%  Similarity=0.299  Sum_probs=154.5

Q ss_pred             eEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           16 MAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        16 ~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +++.+..   +..+++++.+.|.|.++||+|++.++++|+.|+..+.+.....  ..+|.++|+|++|+|+.+|++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~   79 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ--PPLPFTPGYDLVGRVDALGSGVTGF   79 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC--CCCCcccccceEEEEEEeCCCCccC
Confidence            5566664   3578999999999999999999999999999998877653211  2468899999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      ++||+|..++                            ..|+|++|+.++.+.++++|+++++.+++.+. ...++|.++
T Consensus        80 ~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l  131 (331)
T cd08273          80 EVGDRVAALT----------------------------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQML  131 (331)
T ss_pred             CCCCEEEEeC----------------------------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHH
Confidence            9999998751                            24899999999999999999999998887555 677889888


Q ss_pred             HH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          172 RR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      .. ..+.++++++|+| .|++|++++++++.+|+ .++.+.. +++.++++++|+.. ++.+
T Consensus       132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~  190 (331)
T cd08273         132 HRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYR  190 (331)
T ss_pred             HHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCC
Confidence            44 7899999999998 59999999999999999 7888876 88999999999754 3443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=4.9e-22  Score=171.21  Aligned_cols=203  Identities=27%  Similarity=0.346  Sum_probs=165.0

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..   +..+.+++.+.|.+++++++|+|.++++|+.|.....+.+...  ...|.++|+|++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~   78 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP--PPLPARLGYEAAGVVEAVGAGVTG   78 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC--CCCCCCCCcceEEEEEeeCCCCCc
Confidence            35566664   3467888888888999999999999999999987766544221  345778999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+.++..                       .....|++++|+.++.+.++++|+++++.+++.+. ...+++.+
T Consensus        79 ~~~Gd~V~~~~~~-----------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~  135 (328)
T cd08268          79 FAVGDRVSVIPAA-----------------------DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGA  135 (328)
T ss_pred             CCCCCEEEecccc-----------------------ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHH
Confidence            9999999875310                       01245899999999999999999999988877554 67788888


Q ss_pred             HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +. ...+.++++++|+| +|++|++++++++..|+ .++.++.+.++.+.++++|++.+++.+.  .++.+.+.+++
T Consensus       136 ~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  209 (328)
T cd08268         136 LVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE--EDLVAEVLRIT  209 (328)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC--ccHHHHHHHHh
Confidence            74 57888999999998 59999999999999999 7888888999999999999988887664  56666665544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.90  E-value=3.6e-22  Score=170.66  Aligned_cols=191  Identities=29%  Similarity=0.378  Sum_probs=155.3

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++++..++   .+.+++.+.|.++++||+|++.++++|+.|+..+.+..........|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            4566776554   3667788888899999999999999999999887664321112345889999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+.++.                         ....|+|++|+.++...++++|+++++..++.+. ...+++.+
T Consensus        81 ~~~G~~V~~~~~-------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~  135 (309)
T cd05289          81 FKVGDEVFGMTP-------------------------FTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQA  135 (309)
T ss_pred             CCCCCEEEEccC-------------------------CCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHH
Confidence            999999987621                         0136899999999999999999999988877665 46678888


Q ss_pred             HHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          171 CRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       171 l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.. ..+.++++++|+| +|.+|++++++++..|+ .++.+..++ +.+.++++|++++++...
T Consensus       136 ~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~  197 (309)
T cd05289         136 LFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK  197 (309)
T ss_pred             HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC
Confidence            755 4589999999998 59999999999999999 677776666 888889999888887654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.90  E-value=1e-21  Score=168.98  Aligned_cols=198  Identities=25%  Similarity=0.274  Sum_probs=161.6

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |+++.+..   +..+.+.+.+.+.+++++++|+|.++++|+.|.....+...  .+..+|.++|+|++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~vg~~~~~   78 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYP--PPPGASDILGLEVAGEVVAVGEGVSR   78 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCCCCccceeEEEEEEeCCCCCC
Confidence            34555554   34577778777778999999999999999999877765331  11345789999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      +++||+|+.+                            ..+|+|++|+.++...++++|+++++.+++.+. ...+++.+
T Consensus        79 ~~~Gd~V~~~----------------------------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~  130 (325)
T TIGR02824        79 WKVGDRVCAL----------------------------VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSN  130 (325)
T ss_pred             CCCCCEEEEc----------------------------cCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHH
Confidence            9999999864                            134899999999999999999999988777554 67788877


Q ss_pred             H-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 C-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      + +...+.++++++|+| +|++|++++++++..|+ .++++.+++++.+.++++|++.+++...  .++.+.+.+.+
T Consensus       131 ~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  204 (325)
T TIGR02824       131 LFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE--EDFVEVVKAET  204 (325)
T ss_pred             HHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc--hhHHHHHHHHc
Confidence            6 568899999999998 69999999999999999 7888888899999999999988877554  55666665543

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=3.8e-22  Score=171.66  Aligned_cols=179  Identities=30%  Similarity=0.353  Sum_probs=150.3

Q ss_pred             EEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCC
Q 025712           27 KIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISC  106 (249)
Q Consensus        27 ~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~  106 (249)
                      ++++.+.|+++++||+|++.++++|+.|.....+.+........|..+|+|++|+|.++|++++++++||+|+.+..   
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---   91 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLP---   91 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEecc---
Confidence            88899999999999999999999999999887664311111235678999999999999999999999999987521   


Q ss_pred             CCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHHH-cCCCCCCeEEE
Q 025712          107 GHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMI  184 (249)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI  184 (249)
                                            ....|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++.. ..+.++++++|
T Consensus        92 ----------------------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli  149 (319)
T cd08267          92 ----------------------PKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLI  149 (319)
T ss_pred             ----------------------CCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence                                  0135899999999999999999999988877655 67788988855 45899999999


Q ss_pred             Ec-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          185 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       185 ~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +| +|++|++++++++.+|+ .++++.++ ++.+.++++|++++++...
T Consensus       150 ~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~  196 (319)
T cd08267         150 NGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT  196 (319)
T ss_pred             EcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC
Confidence            98 59999999999999999 78887755 8889999999988887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=2e-21  Score=166.84  Aligned_cols=197  Identities=31%  Similarity=0.468  Sum_probs=161.9

Q ss_pred             ceEEEEec---CCCeEEEEecCCCCC-CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           15 NMAAWLLG---IKTLKIQPYHLPTLG-PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        15 ~~~~~~~~---~~~l~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      |+++++..   +..+++.+.+ |.+. +++++|++.++++|+.|.....+.+..  ....|.++|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~   77 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGVT   77 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCCC
Confidence            46777763   3567787777 7665 599999999999999999877664311  123467899999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      .++.||+|+.++                            ..|+|++++.++.+.++++|++++..+++.+. ...+++.
T Consensus        78 ~~~~G~~V~~~~----------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~  129 (323)
T cd08241          78 GFKVGDRVVALT----------------------------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH  129 (323)
T ss_pred             CCCCCCEEEEec----------------------------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHH
Confidence            999999998751                            25899999999999999999999888777444 6778888


Q ss_pred             HHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          170 ACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       170 ~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++. ...+.++++++|+| +|++|++++++++..|+ .++.++.+.++.+.++++|++.+++...  .++.+.+.+.+
T Consensus       130 ~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~  204 (323)
T cd08241         130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD--PDLRERVKALT  204 (323)
T ss_pred             HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC--ccHHHHHHHHc
Confidence            874 57889999999998 59999999999999999 6888888999999999999988887654  56777766654

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.89  E-value=4.1e-23  Score=151.58  Aligned_cols=109  Identities=39%  Similarity=0.745  Sum_probs=96.1

Q ss_pred             CCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCC
Q 025712           38 PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY  117 (249)
Q Consensus        38 ~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~  117 (249)
                      |+||||||++++||++|+.++.+.  .......|.++|||++|+|+++|+++++|++||+|+..+...|++|.+|..+..
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~--~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~   78 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGG--PPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP   78 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTS--SSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhc--cccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence            689999999999999999999874  233368999999999999999999999999999999988889999999999999


Q ss_pred             CCCcCccccCCCCCCCceeEEEEecCCceEEC
Q 025712          118 NLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL  149 (249)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  149 (249)
                      .+|+.....+.. .+|+|+||+.++.++++++
T Consensus        79 ~~c~~~~~~g~~-~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   79 NLCPNPEVLGLG-LDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GGTTTBEETTTS-STCSSBSEEEEEGGGEEEE
T ss_pred             ccCCCCCEeEcC-CCCcccCeEEEehHHEEEC
Confidence            999988777654 7899999999999999874

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.89  E-value=2.4e-21  Score=163.74  Aligned_cols=170  Identities=28%  Similarity=0.370  Sum_probs=147.0

Q ss_pred             CcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCC
Q 025712           39 QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN  118 (249)
Q Consensus        39 ~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~  118 (249)
                      +||+||+.++++|+.|+....+..     ..+|.++|+|++|+|+++|++++.+++||+|.++                 
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~-----~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~-----------------   58 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL-----PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL-----------------   58 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC-----CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE-----------------
Confidence            589999999999999998877643     2457899999999999999999999999999865                 


Q ss_pred             CCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHH
Q 025712          119 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTL  195 (249)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai  195 (249)
                                  ..|+|++|+.++.+.++++|+++++.+++.+. ...+++.++ +...+++|++++|+| +|++|++++
T Consensus        59 ------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~  126 (293)
T cd05195          59 ------------APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAI  126 (293)
T ss_pred             ------------ecCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHH
Confidence                        35899999999999999999999998888664 577888887 457889999999997 799999999


Q ss_pred             HHHHHcCCCeEEEEeCChhHHHHHHHcC--CCEEecCCCCcccHHHHHHHHH
Q 025712          196 LAARAFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       196 ~la~~~G~~~vi~~~~~~~~~~~~~~~g--a~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++++.+|+ .++.+.+++++.++++++|  ++++++...  .++.+.+++++
T Consensus       127 ~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  175 (293)
T cd05195         127 QLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD--LSFADGILRAT  175 (293)
T ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc--hhHHHHHHHHh
Confidence            99999999 7888888999999999988  788887654  56777777654

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=1.3e-20  Score=163.42  Aligned_cols=188  Identities=27%  Similarity=0.374  Sum_probs=154.0

Q ss_pred             CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccC
Q 025712           24 KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG  103 (249)
Q Consensus        24 ~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  103 (249)
                      ..+.+++.+.|.+.+++|+|++.++++|+.|.....+.+..  ....|.++|+|++|+|+.+|+++.++++||+|+++. 
T Consensus        12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~-   88 (337)
T cd08275          12 DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT-   88 (337)
T ss_pred             cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec-
Confidence            36788888888899999999999999999999887664321  134577899999999999999999999999998751 


Q ss_pred             cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCe
Q 025712          104 ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN  181 (249)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~  181 (249)
                                                 ..|+|++|+.++.+.++++|+++++.+++.+. .+.++|+++ .....+++++
T Consensus        89 ---------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  141 (337)
T cd08275          89 ---------------------------RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQS  141 (337)
T ss_pred             ---------------------------CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCE
Confidence                                       34899999999999999999999988887655 677888887 4578899999


Q ss_pred             EEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++|+| .|++|++++++++.. +. .++.. ..+++.++++++|++.+++...  .++.+.+++++
T Consensus       142 vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  203 (337)
T cd08275         142 VLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDYRT--QDYVEEVKKIS  203 (337)
T ss_pred             EEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeCCC--CcHHHHHHHHh
Confidence            99998 599999999999999 43 23222 3456888889999998887665  67777776654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.87  E-value=1e-20  Score=159.72  Aligned_cols=165  Identities=28%  Similarity=0.388  Sum_probs=143.2

Q ss_pred             EEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcC
Q 025712           43 VRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE  122 (249)
Q Consensus        43 V~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  122 (249)
                      ||+.++++|+.|.....+.+      ..|.++|+|++|+|+++|++++.+++||+|..+                     
T Consensus         2 i~v~~~~i~~~d~~~~~g~~------~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~---------------------   54 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLL------PGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL---------------------   54 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCC------CCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE---------------------
Confidence            78999999999998876642      236789999999999999999999999999865                     


Q ss_pred             ccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHH
Q 025712          123 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  199 (249)
Q Consensus       123 ~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~  199 (249)
                              ..|+|++|+.++.+.++++|+++++.+++.+. ...+++.++ +...+.+|++++|+| +|++|++++++++
T Consensus        55 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~  126 (288)
T smart00829       55 --------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQ  126 (288)
T ss_pred             --------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHH
Confidence                    35899999999999999999999999888766 567888887 567889999999998 7999999999999


Q ss_pred             HcCCCeEEEEeCChhHHHHHHHcCC--CEEecCCCCcccHHHHHHHHH
Q 025712          200 AFGAPRIIITDVDVQRLSIARNLGA--DETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       200 ~~G~~~vi~~~~~~~~~~~~~~~ga--~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ..|+ .++++++++++.++++++|+  +.++++..  +++.+.+.+++
T Consensus       127 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~  171 (288)
T smart00829      127 HLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD--LSFADEILRAT  171 (288)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC--ccHHHHHHHHh
Confidence            9999 78999889999999999998  78887664  56777766544

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.80  E-value=1.1e-18  Score=148.02  Aligned_cols=134  Identities=33%  Similarity=0.432  Sum_probs=118.1

Q ss_pred             cCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc
Q 025712           66 FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL  145 (249)
Q Consensus        66 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  145 (249)
                      .+..+|.++|+|++|+|+++|++++.+++||+|+.+                               +.|++|+.++.+.
T Consensus        16 ~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-------------------------------~~~~~~~~v~~~~   64 (277)
T cd08255          16 EKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-------------------------------GPHAERVVVPANL   64 (277)
T ss_pred             ccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-------------------------------CCcceEEEcCHHH
Confidence            345688999999999999999999999999999854                               4689999999999


Q ss_pred             eEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC-C
Q 025712          146 CYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-A  224 (249)
Q Consensus       146 ~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g-a  224 (249)
                      ++++|+++++.+++.+..+.++|+++...+++++++++|+|+|++|++++++|+.+|++.++++++++++.++++++| +
T Consensus        65 ~~~ip~~l~~~~aa~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~  144 (277)
T cd08255          65 LVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA  144 (277)
T ss_pred             eeECcCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC
Confidence            999999999888886666778898887888999999999999999999999999999944999999999999999998 4


Q ss_pred             CEEecC
Q 025712          225 DETAKV  230 (249)
Q Consensus       225 ~~vi~~  230 (249)
                      +++++.
T Consensus       145 ~~~~~~  150 (277)
T cd08255         145 DPVAAD  150 (277)
T ss_pred             cccccc
Confidence            555443

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.72  E-value=1.1e-15  Score=126.73  Aligned_cols=177  Identities=14%  Similarity=0.094  Sum_probs=134.4

Q ss_pred             EecC-CCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceec----cceEEEEEEecCCCCCCCCCCeEEEccCc
Q 025712           30 PYHL-PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG----HECAGIIEEVGSEVKSLEVGDRVALEPGI  104 (249)
Q Consensus        30 ~~~~-p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  104 (249)
                      +++. .++++++||||..|.+..|.-...+.......  ...|+.+|    ..++|+|++.  +-+++++||.|-..   
T Consensus        28 ~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~--y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~---  100 (343)
T KOG1196|consen   28 TVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSD--YAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGI---  100 (343)
T ss_pred             eecccCCCCCccEEeEeeeecCCHHHHhhccCCCccc--ccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEe---
Confidence            4453 46799999999999999876654443322111  33444444    3678999984  66779999999743   


Q ss_pred             CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCce--EECCC--CCC--hhhhccccchHHHHHHH-HHcCCC
Q 025712          105 SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLC--YKLPD--NVS--LEEGAMCEPLSVGVHAC-RRANVG  177 (249)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~ip~--~~~--~~~aa~~~~~~~a~~~l-~~~~~~  177 (249)
                                                  -+|.||.++++...  ++++.  +.+  ....++-++..|||..+ +....+
T Consensus       101 ----------------------------~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk  152 (343)
T KOG1196|consen  101 ----------------------------VGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPK  152 (343)
T ss_pred             ----------------------------ccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCC
Confidence                                        38999998877533  34433  333  33444556888999988 568899


Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCCCcccHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +|++++|-| +|++|+++.|+|+.+|. .||+...+++|.++++. +|.+..+||.++ ++..+++.+
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~e-~~~~~aL~r  218 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEE-SDLSAALKR  218 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccCc-cCHHHHHHH
Confidence            999999997 79999999999999999 99999999999999975 799999999983 477777766

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.68  E-value=1.7e-16  Score=149.80  Aligned_cols=183  Identities=17%  Similarity=0.169  Sum_probs=152.0

Q ss_pred             CCeEEEEecCC---CCCCCcEEEEEeEEecccchHhhHhcccccccC----CCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712           24 KTLKIQPYHLP---TLGPQDVKVRIKALGICGSDVHHFKTMRCANFI----VKKPMVIGHECAGIIEEVGSEVKSLEVGD   96 (249)
Q Consensus        24 ~~l~~~~~~~p---~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~----~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (249)
                      ..|+|.+.|..   +..++.=+.-|-|+++|..|+.+..|+..++-.    .....++|.|++|+          ..-|.
T Consensus      1427 sSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~Gr 1496 (2376)
T KOG1202|consen 1427 SSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGR 1496 (2376)
T ss_pred             cceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCc
Confidence            36888888764   447777899999999999999999987754432    24566899999997          34699


Q ss_pred             eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHc
Q 025712           97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRA  174 (249)
Q Consensus        97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~  174 (249)
                      ||+.+.                            ..-++++-+.++.+++|.+|.++..++|+..+ .+.++|+++ .+.
T Consensus      1497 RvM~mv----------------------------pAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG 1548 (2376)
T KOG1202|consen 1497 RVMGMV----------------------------PAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRG 1548 (2376)
T ss_pred             EEEEee----------------------------ehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhc
Confidence            999752                            34677888899999999999999999999998 588999998 779


Q ss_pred             CCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc----CCCEEecCCCCcccHHHHHHHHHHH
Q 025712          175 NVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEMWGRYKMQWVQA  247 (249)
Q Consensus       175 ~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~----ga~~vi~~~~~~~~~~~~~~~~~~~  247 (249)
                      ..++|+++||| |+|+||++||.+|.+.|. +|+.+..+++|++++.+.    ..+++-|  +.+.+|...++..|++
T Consensus      1549 ~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~N--SRdtsFEq~vl~~T~G 1623 (2376)
T KOG1202|consen 1549 QMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFAN--SRDTSFEQHVLWHTKG 1623 (2376)
T ss_pred             cccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhcccc--cccccHHHHHHHHhcC
Confidence            99999999999 599999999999999999 899999999999999763    3445443  4458999999887764

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=98.55  E-value=2.3e-07  Score=69.55  Aligned_cols=55  Identities=29%  Similarity=0.464  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          189 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       189 ~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++|++++|+|+.+|+ +|++++++++|+++++++|+++++++++  .++.+++++++.
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~   55 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTG   55 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccc
Confidence            589999999999996 9999999999999999999999999887  679999998875

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.09  E-value=1.2e-05  Score=73.74  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE-ecCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVS  231 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v-i~~~  231 (249)
                      ..++++|+|+|+|.+|+++++.|+.+|+ .|+++|.++++++.++++|++.+ +|..
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~  217 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFE  217 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence            4689999999999999999999999999 79999999999999999999954 6654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.34  E-value=0.00025  Score=61.40  Aligned_cols=81  Identities=23%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             CceEECCCCCChhhhccccchHHHHHHHHHcCC----CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH-HH
Q 025712          144 KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV----GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SI  218 (249)
Q Consensus       144 ~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~----~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~-~~  218 (249)
                      +..+++|+.+..+.++...+..+++.+++.+..    -++.+|+|+|+|.+|..+++.++..|+..+++++++.++. ++
T Consensus       139 ~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         139 QKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            455678888888888887787788877754332    4799999999999999999999988877888899888775 56


Q ss_pred             HHHcCC
Q 025712          219 ARNLGA  224 (249)
Q Consensus       219 ~~~~ga  224 (249)
                      .+++|+
T Consensus       219 a~~~g~  224 (311)
T cd05213         219 AKELGG  224 (311)
T ss_pred             HHHcCC
Confidence            677876

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.29  E-value=7.8e-06  Score=73.59  Aligned_cols=133  Identities=19%  Similarity=0.245  Sum_probs=86.5

Q ss_pred             eeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC
Q 025712           73 VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  152 (249)
                      .-|.|+++.+.+++.++++     .|++.+.. ||+|.+|    +..|...+..|. ..++.|++++.++. .+..    
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~g~-~l~~lf~~a~~~~k-~vr~----  152 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTVGK-VLERLFQKAFSVGK-RVRT----  152 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCchH-HHHHHHHHHHHHhh-hhhh----
Confidence            4788889999999998876     55555555 8889888    333443333332 24577888777665 2221    


Q ss_pred             CChhhhccccchHHHHHHH----HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCC
Q 025712          153 VSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA  224 (249)
Q Consensus       153 ~~~~~aa~~~~~~~a~~~l----~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga  224 (249)
                         +....-.....++.++    ......++++++|+|+|.+|.++++.++..|+..+++++++.++.+ +++++|.
T Consensus       153 ---~t~i~~~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       153 ---ETDISAGAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             ---hcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence               1000011122222222    3334467899999999999999999999999668999988888754 5555654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.23  E-value=0.0022  Score=58.95  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=45.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .++.+++|+|+|.+|++++++++.+|+ .|++++.+.++++.++++|++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~  210 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF  210 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            467999999999999999999999999 6999999999999999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.21  E-value=0.001  Score=59.63  Aligned_cols=50  Identities=26%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .-+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.|.+.++++|++.
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~  248 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEV  248 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEE
Confidence            4689999999999999999999999999 7899999999999999888743

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.87  E-value=0.0071  Score=50.65  Aligned_cols=83  Identities=24%  Similarity=0.412  Sum_probs=55.9

Q ss_pred             ceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       134 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +|.++.. +...++.+++++.+..+..-.+. .....+.. ...++++||-.|+|. |.+++.+++ .|+..++++|.++
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~tt~-~~l~~l~~-~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~  152 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHPTTR-LCLEALEK-LVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP  152 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCHHHH-HHHHHHHh-hcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence            4444433 56777888888887766522221 12222322 256889999999887 888876555 6776799999999


Q ss_pred             hHHHHHHH
Q 025712          214 QRLSIARN  221 (249)
Q Consensus       214 ~~~~~~~~  221 (249)
                      ...+.+++
T Consensus       153 ~~l~~A~~  160 (250)
T PRK00517        153 QAVEAARE  160 (250)
T ss_pred             HHHHHHHH
Confidence            88887754

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.75  E-value=0.003  Score=57.08  Aligned_cols=133  Identities=21%  Similarity=0.314  Sum_probs=82.5

Q ss_pred             eeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC
Q 025712           73 VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN  152 (249)
Q Consensus        73 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  152 (249)
                      .-|+|+++-+.+++.++++.-.|..-+      ||+|...    +..|...+..+. ...+.|++.        +++|..
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a----~~~a~~~g~~g~-~l~~lf~~a--------~~~~k~  151 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA----YALAQEAGTVGT-ILNRLFQKA--------FSVAKR  151 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH----HHHHHHcCCchH-HHHHHHHHH--------HHHHhh
Confidence            579999999999999987754554332      3444311    111111111110 122333332        233444


Q ss_pred             CChhhhccccchHHHHHHHHHcC----CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCC
Q 025712          153 VSLEEGAMCEPLSVGVHACRRAN----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA  224 (249)
Q Consensus       153 ~~~~~aa~~~~~~~a~~~l~~~~----~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga  224 (249)
                      +..+.+....+..+++.+++.+.    -.++++++|+|+|.+|.++++.++..|+..+++++++.++.. +++++|.
T Consensus       152 v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        152 VRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             HhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence            44444444446666777764432    267899999999999999999999999878888888888755 5566664

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.73  E-value=0.0074  Score=45.63  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-Hc
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL  222 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~  222 (249)
                      -++++++|+|+|+.|.+++..+...|++.+..+.++.+|.+.+. ++
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~   56 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF   56 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence            36899999999999999999999999988999999998877764 45

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.61  E-value=0.0055  Score=57.48  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC---------------------ChhHHHHHHHcCCCEEecCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV---------------------DVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~---------------------~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ..++|++|+|+|+|..|+++++.++..|+ .|++++.                     .+.+++.++++|++..++..
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~  209 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVR  209 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence            36789999999999999999999999999 6777874                     24567788899998777643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.56  E-value=0.0088  Score=46.96  Aligned_cols=49  Identities=29%  Similarity=0.485  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      +..+++|+|+|.+|..|+.+++.+|+ +++..+...++.+..+..++..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i   67 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFI   67 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEES
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceE
Confidence            34788999999999999999999999 89999999999999988887554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.44  E-value=0.022  Score=47.07  Aligned_cols=67  Identities=21%  Similarity=0.203  Sum_probs=49.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC----CEEecCCCCcccHHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA----DETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga----~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +++.++|.| ++++|.+..+.....|+ +++.+.+..++++.+. +++.    ...+|..+ .+++.+.+..+.+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~   77 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPE   77 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHH
Confidence            457889998 68999999999999999 8999999999988885 4772    33444443 2355555554444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.41  E-value=0.014  Score=52.49  Aligned_cols=55  Identities=33%  Similarity=0.391  Sum_probs=43.3

Q ss_pred             HHHHHHc-CCC-CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          168 VHACRRA-NVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       168 ~~~l~~~-~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      |.++.+. ++. .|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G  255 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDG  255 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcC
Confidence            4455443 444 89999999999999999999999999 7999988877765544444

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=96.40  E-value=0.027  Score=45.48  Aligned_cols=65  Identities=23%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC---CEEecCCCCcccHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA---DETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga---~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .|.+|||.| ++++|++..+-....|. +||++.+++++++..++...   +.+.|..+  .+--+++.+|.
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d--~~~~~~lvewL   72 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD--RDSRRELVEWL   72 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc--hhhHHHHHHHH
Confidence            478999996 89999999888888998 89999999999999987543   45555443  34333444443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.29  E-value=0.017  Score=49.77  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .+++++|+|.|.+|+.+++.++.+|+ +|.+++++.++.+.++++|++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence            68999999999999999999999999 899999998887777766643

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.21  E-value=0.023  Score=50.46  Aligned_cols=46  Identities=28%  Similarity=0.516  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga  224 (249)
                      ++.+++|+|+|.+|+.+++.++.+|+ +|++++++.++.+.+.+ ++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            45669999999999999999999999 79999988888776643 444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.055  Score=45.74  Aligned_cols=49  Identities=20%  Similarity=0.223  Sum_probs=40.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      .+++++|+| +|++|.+.++.....|+ +|++++++.++.+.+.+.+++.+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~   52 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAF   52 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEE
Confidence            467899998 69999999988888999 79999999888888877676543

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.066  Score=45.84  Aligned_cols=59  Identities=25%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCC
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ....+++|.+| |=+ +|..|.+...+|+..|++.++.+.  -+.+|.++++.+||..+....
T Consensus        55 ~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            34568999944 446 799999999999999996666663  378999999999998887544

>PRK08017 oxidoreductase; Provisional

Probab=96.00  E-value=0.047  Score=45.23  Aligned_cols=47  Identities=26%  Similarity=0.347  Sum_probs=40.0

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      ++++|.| +|++|...++.....|+ +++++.++.++.+.++++++..+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~   50 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGI   50 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEE
Confidence            5799998 59999999999999999 78889899998888887776543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.95  E-value=0.022  Score=51.05  Aligned_cols=48  Identities=33%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ...|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|+
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~  239 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGF  239 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCC
Confidence            3689999999999999999999999999 79999888877666665565

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.83  E-value=0.097  Score=42.83  Aligned_cols=41  Identities=24%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|..+++.+...|+ .|+.+++++++.+.+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   45 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM   45 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999998 79999999999999999 788888888877665

>PRK06182 short chain dehydrogenase; Validated

Probab=95.72  E-value=0.092  Score=44.14  Aligned_cols=48  Identities=21%  Similarity=0.231  Sum_probs=38.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .+++++|+| +|++|...++.+...|+ +|++++++.++.+.+.+.++..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~   50 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHP   50 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeE
Confidence            467899998 69999999998888999 7888888888877666555543

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.098  Score=44.00  Aligned_cols=51  Identities=24%  Similarity=0.219  Sum_probs=40.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE-ecCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVS  231 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v-i~~~  231 (249)
                      +++||+| +|++|...++.+...|+ .|++++++.++.+.+.+.+...+ .|..
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~   54 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVN   54 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCC
Confidence            4789998 79999999998888999 79999888888777776665443 3444

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.58  E-value=0.074  Score=45.17  Aligned_cols=52  Identities=19%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .+++......+++++|+|+|+.+.+++..++..|+.++.++.++.+|.+.+.
T Consensus       112 ~~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        112 KLLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             HHHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            3444444555679999999999999999999999988999999988877653

>PLN02494 adenosylhomocysteinase

Probab=95.56  E-value=0.04  Score=50.15  Aligned_cols=47  Identities=30%  Similarity=0.282  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      -.|++++|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|+
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~  298 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGY  298 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCC
Confidence            579999999999999999999999999 79999888776555554554

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.48  E-value=0.051  Score=50.09  Aligned_cols=50  Identities=30%  Similarity=0.415  Sum_probs=42.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +.++++++|+|.|..|++++.+++..|+ .|++.|..+++.+.++++|+..
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~   58 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVAT   58 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEE
Confidence            4578999999999999999999999999 7888987777777677777643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.40  E-value=0.089  Score=45.00  Aligned_cols=67  Identities=10%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CCCCeEEEEc-CChHHHH-HHHHHHHcCCCeEEEEeCChhHHHHHH-----HcCC---CEEecCCCCcccHHHHHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLV-TLLAARAFGAPRIIITDVDVQRLSIAR-----NLGA---DETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~-ai~la~~~G~~~vi~~~~~~~~~~~~~-----~~ga---~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +-|+|.+|.| +.++|.+ |-+||+ +|+ +++.+.++.+|++..+     +.++   ..++|+..+++ ..+.+++.+.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~  123 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA  123 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence            4679999998 6899977 667777 999 7999999999988774     3343   35778887655 4556655443

>PRK04148 hypothetical protein; Provisional

Probab=95.35  E-value=0.13  Score=38.84  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=40.5

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      ...++.++++.|.| .|..........|. .|+++|.+++..+.+++.+.+.++
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~   64 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFV   64 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEE
Confidence            33457889999988 78755555557898 899999999999999888765544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.34  E-value=0.061  Score=42.58  Aligned_cols=47  Identities=30%  Similarity=0.318  Sum_probs=38.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      -.|++|.|+|.|.+|+..++.++.+|+ +|++.+++........+.+.
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccc
Confidence            469999999999999999999999999 89999988776654444443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.32  E-value=0.077  Score=42.93  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=40.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~  225 (249)
                      -.|++++|+|.|.+|..+.+.+...|+ +|++++.+.++.+.+.+ +|+.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~   74 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT   74 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            367899999999999999999999999 78899988888776654 4643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08324 short chain dehydrogenase; Validated

Probab=95.28  E-value=0.08  Score=50.91  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=54.9

Q ss_pred             CceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       133 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      -++++|..+++..++.+ +.++.+++.+...        ......+|+++||+| +|++|.+.++.+...|+ .|+++++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~--------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r  454 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM--------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL  454 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcC--------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            45556666676666666 5566666642100        012234689999998 79999999999999999 7999988


Q ss_pred             ChhHHHHHHH
Q 025712          212 DVQRLSIARN  221 (249)
Q Consensus       212 ~~~~~~~~~~  221 (249)
                      +.++.+.+.+
T Consensus       455 ~~~~~~~~~~  464 (681)
T PRK08324        455 DEEAAEAAAA  464 (681)
T ss_pred             CHHHHHHHHH
Confidence            8877665543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.25  E-value=0.065  Score=45.73  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++++|+|+|+.+.+++.-++..|+.++.++.++.+|.+.+.+
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            468999999999999999999999998889999999999777743

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.18  Score=41.03  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +++++||+| +|.+|...++.....|+ +|++++++.++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~   43 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAP   43 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHh
Confidence            478999998 79999999988888899 68888886655

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.08  E-value=0.092  Score=44.97  Aligned_cols=45  Identities=27%  Similarity=0.462  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .|++++|+|.|.+|.+++..++.+|+ +|.+.+++.++.+.+.++|
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g  194 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMG  194 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCC
Confidence            57899999999999999999999999 7888888887765555444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.18  Score=41.40  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=37.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~  225 (249)
                      ++++++|.| +|++|...++.+...|+ +|+.++++.++.+.+.+ .+..
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~   56 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCE   56 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCe
Confidence            568999998 69999999999999999 78888888877765543 4443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.95  E-value=0.088  Score=45.02  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ..+++++|+|+|+.|.+++..+...|+.++.+++++.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            35689999999999999999999999988999999988876653

>PRK06139 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.2  Score=43.74  Aligned_cols=47  Identities=36%  Similarity=0.455  Sum_probs=37.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~  225 (249)
                      .++++||+| +|++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~   57 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAE   57 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            568999998 69999999999999999 788888888876543    345654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=94.72  E-value=0.26  Score=41.13  Aligned_cols=43  Identities=21%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++++++|.| +|++|...++.....|+ +|++++++.++.+.+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~   47 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA   47 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            478999998 79999999988888999 78888888877766655

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.71  E-value=0.23  Score=41.87  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=39.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...++++||+| ++++|..........|. .++.+.++++|++.+.+
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~   48 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAK   48 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHH
Confidence            35678999998 69999999999999999 89999999999888743

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.71  E-value=0.11  Score=44.40  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+|+|+.+.+++..+...|+.++.++.++.+|.+.+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            578999999999999999999999998899999998877655

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.63  E-value=0.12  Score=44.17  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=38.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ..+++++|+|+|+.+.+++..+...|+.++.++.++.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            35789999999999999999888899988989999988876664

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.57  E-value=0.13  Score=43.82  Aligned_cols=44  Identities=20%  Similarity=0.322  Sum_probs=37.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ..+++++|+|+|++|.+++..+...|+.+|.++.++.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            45789999999999999999999999668999999888765553

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.55  E-value=0.23  Score=40.45  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ++++|.| +|++|...+......|+ +|+++++++++.+.+++++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~   45 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALP   45 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhcc
Confidence            4688998 79999998888888899 8999988887776666554

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.52  E-value=0.35  Score=40.13  Aligned_cols=46  Identities=28%  Similarity=0.389  Sum_probs=36.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      ++++++|.| +|++|.+.++.....|+ .++++++++.+.+.+ ++++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~   53 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG   53 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            578999998 69999999999989999 788888887765544 44544

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=94.48  E-value=0.27  Score=42.56  Aligned_cols=63  Identities=22%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             HHHHHH----HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEec
Q 025712          166 VGVHAC----RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAK  229 (249)
Q Consensus       166 ~a~~~l----~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~  229 (249)
                      .||+++    ....++||++.||-. +|..|.....+|...|+ +++++-.   +.+|...++++|+..+.-
T Consensus        86 ia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen   86 IAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILT  156 (362)
T ss_pred             HHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEec
Confidence            456665    336789999999998 79999999999999999 5665533   668999999999988763

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.47  E-value=0.36  Score=39.92  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.+++++|+| +|++|.+.+..+...|+ +|+++.++.++.+.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   49 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL   49 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4579999998 79999999999888999 789888888776554

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.46  Score=39.57  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEc-CC-hHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          176 VGPETNVMIMG-SG-PIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       176 ~~~g~~vlI~G-~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ...+++++|+| +| ++|.+.++.+...|+ .|+++++++++.+..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            34578999998 55 799999999999999 688888877665544

>PRK07814 short chain dehydrogenase; Provisional

Probab=94.36  E-value=0.4  Score=40.01  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...++.....|+ +|++++++.++.+.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   50 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV   50 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 78999999998888999 888888887765544

>PRK07825 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.46  Score=39.83  Aligned_cols=44  Identities=39%  Similarity=0.460  Sum_probs=35.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      ++++||+| +|++|...++.....|+ .++++++++++.+.+ ++++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~   50 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG   50 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence            67899998 79999998888888899 688888888776654 3444

>PRK12742 oxidoreductase; Provisional

Probab=94.25  E-value=0.28  Score=40.00  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHHH-HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~-~~~ga~  225 (249)
                      +++++||+| +|++|.+.++.....|+ +++.+.+ ++++.+.+ +++++.
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~   54 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGAT   54 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCe
Confidence            478999998 79999999999999999 6666533 44444443 445654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.41  Score=38.85  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=44.9

Q ss_pred             HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH----HHHHcCCCE
Q 025712          168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADE  226 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~----~~~~~ga~~  226 (249)
                      ..+++...++++++||=+|+|+ |+.+.-+++..|  +|+.+++.++-.+    .++.+|...
T Consensus        62 A~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          62 ARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             HHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            3456778999999999999876 999999999998  7999998876433    356678854

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.21  E-value=0.37  Score=39.83  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++++||.| +|++|...++.....|+ +|+.+.++.+..+...++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~   58 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQL   58 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh
Confidence            478999998 69999998888888999 788888887765555554

>PRK05872 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.26  Score=42.06  Aligned_cols=45  Identities=24%  Similarity=0.363  Sum_probs=37.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      +++++||+| +|++|.+.++.....|+ +|+.++++.++.+.+ ++++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            578999998 79999999999999999 788888888776654 4454

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.14  E-value=0.53  Score=40.19  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|.+.++.+...|+ .|++++++.++.+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            457899998 79999998888888899 789998888776554

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.37  Score=39.88  Aligned_cols=41  Identities=27%  Similarity=0.283  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL   49 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            478999998 69999999998888999 788888887766544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.04  E-value=0.45  Score=34.36  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=39.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++|.|.|.+|...++..+..+. .+++++.++++.+.+++.|.. ++.-+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~   49 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA   49 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc
Confidence            5778999999999999999775 899999999999999988844 444443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=93.99  E-value=0.39  Score=39.98  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++++||+| +|++|...++.+...|+ +|+.+++++++.+.+.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~   48 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQ   48 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            578999998 79999999988889999 78888888887766654

>PRK11761 cysM cysteine synthase B; Provisional

Probab=93.98  E-value=0.9  Score=39.04  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +...+.+|++|+...+|..|++....|+..|.+.++.+..  +++|.+.++.+|++.++...
T Consensus        56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~  117 (296)
T PRK11761         56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPK  117 (296)
T ss_pred             HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence            3445667777666568999999999999999977777743  56999999999998876543

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=93.96  E-value=0.083  Score=26.92  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=16.0

Q ss_pred             ceEEEEecCCCeEEEEecCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL   36 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~   36 (249)
                      |+|+++.|++.++++++|.|.+
T Consensus         1 MkAv~y~G~~~v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKDVRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTEEEEEEE----S
T ss_pred             CcceEEeCCCceEEEECCCccc
Confidence            6899999999999999999875

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=93.93  E-value=0.19  Score=45.88  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .-.|++++|.|.|.+|...++.++.+|+ +|++++.++.+...+...|
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G  297 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEG  297 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcC
Confidence            4579999999999999999999999999 7888877766653333334

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.87  E-value=0.32  Score=38.40  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCC-hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712          178 PETNVMIMGSG-PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG  238 (249)
Q Consensus       178 ~g~~vlI~G~g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~  238 (249)
                      .|..|++.|+| ++|...++-....|+ +||++.++++.+..+-+.-..+++-..-|-.+|.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~we   66 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETPSLIIPIVGDLSAWE   66 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCCcceeeeEecccHHH
Confidence            57889999864 899999998889999 8999999999888776655444443333334553

>PRK07677 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.51  Score=39.05  Aligned_cols=40  Identities=30%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      |++++|.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~   41 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEA   41 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57899998 79999999999999999 788888887765544

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.80  E-value=0.43  Score=39.55  Aligned_cols=44  Identities=25%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      -+++++||.| +|++|...+..+...|+ .|+.++++.+..+.+.+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~   53 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAA   53 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5778999998 79999999999889999 68888887776665543

>TIGR01138 cysM cysteine synthase B

Probab=93.79  E-value=1.1  Score=38.31  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+.++++++...+|..|.+....|+.+|.+.++.+..  +++|.+.++.+|++.++.
T Consensus        52 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v  111 (290)
T TIGR01138        52 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILV  111 (290)
T ss_pred             HcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            3444567777655568999999999999999976666654  468999999999987653

Alternate name: O-acetylserine (thiol)-lyase

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=93.72  E-value=0.45  Score=42.46  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             hhhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          155 LEEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       155 ~~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ..+|.....+.+.-.++..... =+|.+|.|.|.|.||+.+++.+...|+ ++++++.+..
T Consensus       182 r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         182 RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            3445444444333344555444 489999999999999999999998999 7888876666

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.72  E-value=0.11  Score=47.30  Aligned_cols=68  Identities=6%  Similarity=-0.023  Sum_probs=49.0

Q ss_pred             HcCCCCCCeEE----EEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC-EEecCCCCcccHHHHHHH
Q 025712          173 RANVGPETNVM----IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       173 ~~~~~~g~~vl----I~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~-~vi~~~~~~~~~~~~~~~  243 (249)
                      ..++++|+.+|    |+| +|++|.+++|+++..|+ .|+++...+.+....+..+.+ .++|.+.  ..+.+.+..
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~l~~  101 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG--ITDPADLKA  101 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC--CCCHHHHHH
Confidence            35678888888    775 79999999999999999 788887666655555555665 5666554  444555444

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.71  E-value=0.29  Score=38.29  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=32.1

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      |+|.| +|.+|...++.+...|. .|.++.+++++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc
Confidence            68888 69999999999999998 88888899988776

...

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.47  Score=39.94  Aligned_cols=44  Identities=25%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++++||.| +|++|.+.++.+...|+ +|++++++.++.+.+.+.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~   47 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL   47 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh
Confidence            467899998 79999999988888999 799998888887766553

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.58  Score=38.13  Aligned_cols=41  Identities=32%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+| +|.+|...++.+...|+ +|+++++++++...+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEA   46 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence            468899998 69999998888888899 688888877665544

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=93.66  E-value=0.2  Score=42.37  Aligned_cols=48  Identities=35%  Similarity=0.520  Sum_probs=40.8

Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHHH
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN  221 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~  221 (249)
                      .+.++++++||.+|+|. |..++++++..|.. .+++++.+++.++.+++
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            35688999999999887 88888888887753 69999999999888876

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.55  Score=38.82  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=34.4

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -++++++|.| +|++|...+..+...|+ +|+.+++++++.+.+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~   45 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEV   45 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            3578999998 79999999988889999 788888887665444

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.63  E-value=0.59  Score=38.74  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHHHHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~~~~ga  224 (249)
                      .+++++|.| +|++|.+.++.....|+ +++.+. ++++..+.+++.++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~   53 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGV   53 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCC
Confidence            468899998 79999999888888999 566553 34444555544443

>PRK06101 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.47  Score=39.01  Aligned_cols=42  Identities=24%  Similarity=0.228  Sum_probs=34.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+++|.| +|++|...+......|+ +|+++++++++.+.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence            5688997 79999988777778899 788899988887776554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=93.58  E-value=0.15  Score=43.36  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=35.6

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++++++|++||-+|.| -|..++.+++..|+ +|.+++.+++..++++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence            3477899999999999977 47788889999999 8999999999988875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.44  E-value=0.25  Score=42.39  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+++++|+|+|+.+.+++..+...|+.++.++.+++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            578999999999999877777778998898888874

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.42  E-value=0.27  Score=41.16  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| ++++|.+.++.+...|+ +|+.++++.++.+.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   48 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKA   48 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 68999999999889999 788888887776544

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.39  E-value=0.29  Score=41.93  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -.+++++|+|+|+.|.+++..+...|+++|.++.++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3578899999999999999888889997688888875

>PRK06953 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.55  Score=38.04  Aligned_cols=45  Identities=38%  Similarity=0.452  Sum_probs=36.3

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      ++++|+| +|++|...++.....|+ +++.++++.++.+.++..+..
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~   47 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAE   47 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccce
Confidence            4688887 79999998887777899 788888888887777766643

>PRK09072 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.65  Score=38.64  Aligned_cols=42  Identities=29%  Similarity=0.459  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++++||+| +|++|...+......|+ .|+++++++++.+.+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   46 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALA   46 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            467899998 79999998888888999 7888888887765553

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.29  E-value=0.71  Score=37.92  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|...++.....|+ +++.+++++++.+.+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~   46 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERV   46 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 69999998888888899 788888877655433

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.7  Score=38.52  Aligned_cols=45  Identities=29%  Similarity=0.393  Sum_probs=35.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      .+++++|.| +|++|.+.++.....|+ +|+.++++.++.+.+ ++++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   51 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG   51 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            468999998 69999999988888999 788888887765544 3444

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.25  E-value=0.31  Score=40.08  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...++.....|+ +|++++++.++.+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~   45 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            467899998 69999998888888899 699998888766554

>PLN03013 cysteine synthase

Probab=93.24  E-value=1.1  Score=40.57  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++|.+.+|.. +|..|++....|+.+|++.++.+.  .+++|.+.++.+||+.++.
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v  227 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT  227 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence            445567886766765 899999999999999996666653  3678999999999987754

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.21  E-value=0.33  Score=39.91  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...++.+...|+ +++.+++++++.+.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~   45 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA   45 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 69999999999998999 788888887665433

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.19  E-value=0.32  Score=40.25  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.++.+...|+ +|+.+++++++.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA   49 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            578999998 79999999888888899 78888888766543

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.16  E-value=0.57  Score=35.86  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ++++|.| ++++|...++.....|..+++.+.++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            4789998 79999998777777777688888888

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=93.11  E-value=0.72  Score=38.02  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            467899998 79999999999888999 788888877665443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=93.02  E-value=1.2  Score=36.54  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=29.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||.| +|++|.+.++.+...|+ +|+.++++.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence            478999998 69999998888888999 788887654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.99  E-value=0.47  Score=42.28  Aligned_cols=44  Identities=18%  Similarity=0.313  Sum_probs=38.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .++||+|+|.+|+.+++.+...|-.+|.+.+++.++.+.+.+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~   45 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI   45 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence            57899999999999999988888448999999999998887664

>PRK06198 short chain dehydrogenase; Provisional

Probab=92.99  E-value=0.9  Score=37.61  Aligned_cols=40  Identities=15%  Similarity=0.220  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|.| +|++|...++.+...|++.|++++++.++..
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE   45 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            578899998 6999999999998999954888887766544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.94  E-value=0.38  Score=39.45  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh----------hHHHHHHHcC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLG  223 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~~g  223 (249)
                      -.|.+++|.|.|.||+.+++++...|+..|.+.|.+.          +..+..++.+
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~   77 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG   77 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence            3689999999999999999999999995555566665          5666665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=92.91  E-value=0.62  Score=39.52  Aligned_cols=43  Identities=26%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      -.|+.++|.| +.++|.+.+......|+ +|+.+.+++++.+...
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~   49 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA   49 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            3678899998 78999999999999999 8899988888765553

>PRK08703 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.36  Score=39.54  Aligned_cols=41  Identities=22%  Similarity=0.339  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++++|+| +|++|...++.....|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence            467999998 79999999988888999 788888888766544

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.85  E-value=0.37  Score=40.17  Aligned_cols=41  Identities=32%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            478999998 68999999999989999 788888887765543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.84  E-value=0.85  Score=34.71  Aligned_cols=55  Identities=24%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCC
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGA  224 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga  224 (249)
                      ++..... ..+++++|+|+|.+|...++.....|...+.+++++.++.+. .++++.
T Consensus         9 a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~   65 (155)
T cd01065           9 ALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE   65 (155)
T ss_pred             HHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            3444333 457889999999999999888888864478888888777655 344453

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.4  Score=40.13  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +++++||.| +|++|...++.....|+ .|+++++++++.+.
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~   48 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDA   48 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            578999998 69999999988888999 78888887766543

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.72  Score=38.20  Aligned_cols=43  Identities=21%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++++||+| +|++|...++.....|+ .++.+++++++.+..++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~   49 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEE   49 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHH
Confidence            468999998 69999998888888899 67777777776544443

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.80  E-value=1.1  Score=36.66  Aligned_cols=42  Identities=24%  Similarity=0.244  Sum_probs=34.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ...++++|.| +|++|...+..+...|. +|+++++++++.+.+
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEAL   46 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3567899998 79999999999988999 788888887765544

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.79  E-value=1.2  Score=36.21  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +++++||+| +|++|...++.....|. .|+++.+++++.+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~   44 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEA   44 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHH
Confidence            457899998 69999999988888999 68888888776443

>PRK07024 short chain dehydrogenase; Provisional

Probab=92.77  E-value=0.94  Score=37.58  Aligned_cols=41  Identities=22%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++++|+| +|++|...+......|+ +++.++++.++.+.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~   43 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFA   43 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46899998 79999998888888899 7888888887766543

>TIGR01139 cysK cysteine synthase A

Probab=92.76  E-value=2  Score=36.86  Aligned_cols=59  Identities=20%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecC
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKV  230 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~  230 (249)
                      +.....+|++++-..+|..|.+....|+..|.+.++.+..  ++.|.++++.+||+.++.-
T Consensus        50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~  110 (298)
T TIGR01139        50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTP  110 (298)
T ss_pred             HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEEC
Confidence            3444567777644458999999999999999976666654  4678999999999877643

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.74  E-value=1  Score=37.91  Aligned_cols=35  Identities=23%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++||.|+ +  ++|.+..+.....|+ +|+.+.+++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~   43 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGE   43 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCch
Confidence            5788999984 3  899998888888999 777776654

>PLN02565 cysteine synthase

Probab=92.74  E-value=1.6  Score=38.06  Aligned_cols=55  Identities=27%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe
Q 025712          174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  228 (249)
Q Consensus       174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi  228 (249)
                      ..+.+|.+.+|.. +|..|++....|+..|.+.+|.+.  .++.|++.++.+|++.++
T Consensus        61 g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~  118 (322)
T PLN02565         61 GLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVL  118 (322)
T ss_pred             CCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Confidence            4457887766765 799999999999999996666663  367999999999998765

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.72  E-value=0.35  Score=41.99  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|++++|.| +|++|.+.++.....|+ +|+.+++++++.+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            589999998 69999988777777899 788888998887654

>PRK09291 short chain dehydrogenase; Provisional

Probab=92.72  E-value=0.4  Score=39.60  Aligned_cols=40  Identities=15%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||+| +|++|...++.+...|+ .++++.++.++.+.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~   42 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTAL   42 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            46899998 79999999999999999 788887776655443

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=92.71  E-value=1.1  Score=38.38  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=45.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .+.++..++|..|.+....|+..|.+.++.+..  +++|.+.++.+|++.+.. ..+..+..+...++.
T Consensus        65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~-~~~~~~~~~~a~~la  132 (304)
T cd01562          65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLY-GEDFDEAEAKARELA  132 (304)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe-CCCHHHHHHHHHHHH
Confidence            445555568999999999999999976666643  567899999999875543 332233334444443

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.70  E-value=1.2  Score=37.20  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +  +++|.+.++.....|+ +|+.++++++
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~   47 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDK   47 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChh
Confidence            478999998 4  3899998888888999 6877777654

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.66  E-value=1.2  Score=36.45  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=33.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++++|+| +|++|...+......|+ +++++++++++.+.+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   47 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEAREL   47 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            478999998 69999999988888999 788888777755443

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=92.66  E-value=1.8  Score=38.53  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++|.+.+|.+ +|..|.+....|+.+|++.++.+.  .+.+|.+.++.+||+.++-
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~  163 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT  163 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence            345577887777776 799999999999999997666664  3578999999999988763

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=92.66  E-value=0.63  Score=39.62  Aligned_cols=53  Identities=19%  Similarity=0.399  Sum_probs=45.4

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH----cCCC
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD  225 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----~ga~  225 (249)
                      ++..++++|+++|=+|.|- |.+++..|+..|+ +|++++-+++..+++++    .|..
T Consensus        65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~  121 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE  121 (283)
T ss_pred             HHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC
Confidence            3778999999999998776 7788999999999 89999999999888865    4654

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=92.61  E-value=0.94  Score=37.49  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=35.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++||.| +|++|...++.....|+ +|+.++++.++.+.+.+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~   48 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAAL   48 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            367899998 79999999998888999 78888888877655543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.56  E-value=0.44  Score=44.65  Aligned_cols=46  Identities=20%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          173 RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       173 ~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ..+.+.|+++||.| +|++|.+.++.+...|+ .|+++.++.++.+.+
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            45678999999998 69999999999888999 788888888776543

>TIGR01136 cysKM cysteine synthases

Probab=92.56  E-value=2.2  Score=36.59  Aligned_cols=58  Identities=22%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +.....+|++++-..+|..|++....|+.+|.+.+|.+..  ++.|.+.++.+|++.+..
T Consensus        51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~  110 (299)
T TIGR01136        51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILT  110 (299)
T ss_pred             HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            3344566776654458999999999999999977777754  568999999999987764

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PRK06500 short chain dehydrogenase; Provisional

Probab=92.55  E-value=1.2  Score=36.44  Aligned_cols=46  Identities=37%  Similarity=0.423  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      ++++++|.| +|++|...++.....|+ +++++++++++.+.+ ++++.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~   52 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGE   52 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCC
Confidence            468999998 79999999999999999 788888877665544 34554

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=92.54  E-value=0.69  Score=42.05  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE-eCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVD  212 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~-~~~  212 (249)
                      -+|.+|+|.|.|.||..+++.+...|+ +|+++ |++
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD  270 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence            378999999999999999999999999 77755 444

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.52  E-value=0.46  Score=39.44  Aligned_cols=41  Identities=24%  Similarity=0.371  Sum_probs=34.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...++.....|+ +|+.++++.++.+.+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~   52 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA   52 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999998888888999 788888887765544

>PRK06482 short chain dehydrogenase; Provisional

Probab=92.50  E-value=1.1  Score=37.63  Aligned_cols=41  Identities=22%  Similarity=0.111  Sum_probs=33.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++||+| +|++|...++.....|. .++++.++.++.+.+++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~   44 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKA   44 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5789998 79999998888888899 78888888877766654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.49  E-value=0.46  Score=43.57  Aligned_cols=53  Identities=21%  Similarity=0.352  Sum_probs=42.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEecC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAKV  230 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~~  230 (249)
                      ..+++|+|+|+|..|+.+...++..|+ .|+..+..+                     ...++++++|++...+.
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~  212 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC  212 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence            368899999999999999999999999 577776543                     34677888998766543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.48  E-value=0.46  Score=39.49  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=33.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|.+.++.....|+ +|+.+++++++.+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~   47 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERA   47 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478899998 79999999988888999 788888877765544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=92.47  E-value=1.3  Score=37.98  Aligned_cols=44  Identities=27%  Similarity=0.501  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ..++++||-.|+|. |..++.+++ .|+.++++++.++...+.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            45789999999877 777777665 577789999999887777754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK08226 short chain dehydrogenase; Provisional

Probab=92.47  E-value=1  Score=37.39  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+| +|++|.+.++.+...|+ +|+.++++.+..+..
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   46 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLA   46 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            468999997 79999999988888999 788888776544433

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=92.41  E-value=1.1  Score=36.97  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++|.| +|++|.+.+..+...|+ +|+++++++++.+.+.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~   42 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKD   42 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            688888 79999999998888999 78888888877766543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=92.40  E-value=0.95  Score=37.20  Aligned_cols=41  Identities=27%  Similarity=0.423  Sum_probs=33.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++++||.| +|.+|...+......|+ +|++++++.++.+.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~   42 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAA   42 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            35799998 79999999988888999 7888888877665553

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.39  E-value=0.62  Score=40.17  Aligned_cols=42  Identities=17%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      +|+|+| +|.+|...++.+...|. .|.++.++.++...+...|
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~   44 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWG   44 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcC
Confidence            689998 79999999998888998 7888877766554443333

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.36  E-value=0.88  Score=36.32  Aligned_cols=42  Identities=24%  Similarity=0.487  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++.+++|.| +|++|...+..+...|. .++.+.++.++.+.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~   69 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA   69 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            578999998 69999988888888887 7888888877765543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09186 flagellin modification protein A; Provisional

Probab=92.33  E-value=0.47  Score=39.15  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...+......|+ +++.+.++.++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHH
Confidence            578999998 69999998888888999 788888877765543

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.32  E-value=0.49  Score=39.15  Aligned_cols=41  Identities=20%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|...+......|+ +++.+++++++.+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~   46 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL   46 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            467899998 79999998888888999 788888887766544

>PLN02253 xanthoxin dehydrogenase

Probab=92.32  E-value=1.1  Score=37.75  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~   57 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN   57 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            478899998 79999998888888899 78888777655443

>PRK06914 short chain dehydrogenase; Provisional

Probab=92.32  E-value=1.1  Score=37.65  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||+| +|++|...+......|+ .|++++++.++.+.+
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   43 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENL   43 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            57889998 79999999988888899 788888777665544

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.28  E-value=1  Score=37.42  Aligned_cols=44  Identities=20%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+++++|.| +  +++|.+..+.....|+ +|+.+.++++..+.++++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~   52 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL   52 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh
Confidence            578999998 4  5999998888888999 788887765444445554

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.26  E-value=0.41  Score=39.04  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             CCCCeEEEEc--CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC-CEEecCCC
Q 025712          177 GPETNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA-DETAKVST  232 (249)
Q Consensus       177 ~~g~~vlI~G--~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga-~~vi~~~~  232 (249)
                      +..+.|||.|  .|++|.+...=...-|+ .|+++.+..+..+-+. ++|+ .+-.|.++
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~   63 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSK   63 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCC
Confidence            3567899986  49999987777777899 8999999999988887 7885 44555555

>PRK08862 short chain dehydrogenase; Provisional

Probab=92.25  E-value=1.4  Score=36.15  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| ++++|.+...-....|+ +|+.+.+++++.+.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~   45 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDT   45 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            478999998 68999998888888999 788888888776543

>PRK06125 short chain dehydrogenase; Provisional

Probab=92.24  E-value=0.51  Score=39.19  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| ++++|...++.....|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL   47 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            478999998 68999998888888999 888888887766543

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.22  E-value=1.1  Score=36.47  Aligned_cols=44  Identities=20%  Similarity=0.381  Sum_probs=34.1

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD  225 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~  225 (249)
                      +++|.| +|++|.+.++.....|+ +++.+++++++.+.+ +++++.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~   47 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVD   47 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCc
Confidence            578887 69999999988888899 788888888776654 344443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.16  E-value=0.52  Score=44.24  Aligned_cols=47  Identities=17%  Similarity=0.307  Sum_probs=41.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      ++++|.|.|.+|+..++..+..|. .++++|.++++.+.+++.|...+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i  464 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAV  464 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEE
Confidence            678999999999999999999998 79999999999999988775443

>PRK06196 oxidoreductase; Provisional

Probab=92.16  E-value=1.3  Score=38.10  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+| +|++|.+.+......|+ +|+++.++.++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999998 69999998888888999 788888887765543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.14  E-value=0.76  Score=37.88  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             HHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCC--eEEEEeCC
Q 025712          170 ACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAP--RIIITDVD  212 (249)
Q Consensus       170 ~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~--~vi~~~~~  212 (249)
                      +++... --.+++++|+|+|+.|.+++..+...|++  +++.++++
T Consensus        15 al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          15 ALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             HHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            344433 24578999999999999999988899997  89999887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.14  E-value=1.4  Score=36.48  Aligned_cols=40  Identities=13%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||.| +|++|.+.+......|+ +++.++++.++.+.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~   42 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANV   42 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            56899998 69999998888888899 788888877655433

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=92.12  E-value=0.99  Score=37.40  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||.| +|++|.+.++.....|+ +|+.+++++...+..+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~   49 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAA   49 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHH
Confidence            468899998 79999999988888999 7888887654333333

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.10  E-value=1.4  Score=36.73  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=27.5

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+++++|.|+ +  ++|.+..+.....|+ +|+.+.+++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~   44 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE   44 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch
Confidence            5788999984 4  799998888778899 677776663

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=92.08  E-value=1.3  Score=38.41  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .++++|+..++|..|.+....|+.+|++.++.+..  ++.|.+.++.+||+.+..
T Consensus        49 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~  103 (316)
T cd06448          49 NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVH  103 (316)
T ss_pred             ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence            34666665678999999999999999976666643  678899999999987653

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=92.06  E-value=0.65  Score=37.27  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=40.2

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIAR  220 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~  220 (249)
                      +....+.+++++|-+|+|. |..++.+++..+ ..++++++.+++..+.++
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            4567889999999999887 888889988764 237999999998888664

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.56  Score=38.73  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|.| +|++|...++.....|+ +|+.+++++++.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~   45 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGE   45 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            478999998 69999998888888899 7888888876643

>PRK10717 cysteine synthase A; Provisional

Probab=91.96  E-value=3.2  Score=36.18  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=44.9

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .....+++++|+...+|..|++....|+.+|.+.++.+..  ++.|.+.++.+||+.+..
T Consensus        57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~  116 (330)
T PRK10717         57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLV  116 (330)
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Confidence            4444567777665568999999999999999976666643  567899999999987654

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=91.95  E-value=3  Score=36.10  Aligned_cols=143  Identities=11%  Similarity=0.050  Sum_probs=74.6

Q ss_pred             EEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC----CCCCCceeEEEEecCCceEECCCCCCh
Q 025712           80 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS----PPTNGSLAHKVVHPAKLCYKLPDNVSL  155 (249)
Q Consensus        80 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~  155 (249)
                      ++|++  +.++.+.+|.|+..+.-...    + ..-.+.--..-++.+.    ..-...|-+|..+..+..+.  +..+.
T Consensus        39 A~Vve--S~~~~i~vGerlyGy~P~as----h-l~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~--~~~e~  109 (314)
T PF11017_consen   39 ATVVE--SRHPGIAVGERLYGYFPMAS----H-LVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD--PERED  109 (314)
T ss_pred             EEEEe--eCCCCccCccEEEeeccccc----e-eEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC--cchhH
Confidence            56666  78888999999975311000    0 0000000000011110    01123444555554433221  11222


Q ss_pred             hhhccccchHHHHHHHHH---cCCCCCCeEEEEc-CChHHHHHHHHHH-HcCCCeEEEEeCChhHHHHHHHcCC-CEEec
Q 025712          156 EEGAMCEPLSVGVHACRR---ANVGPETNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIARNLGA-DETAK  229 (249)
Q Consensus       156 ~~aa~~~~~~~a~~~l~~---~~~~~g~~vlI~G-~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~~ga-~~vi~  229 (249)
                      .++.+-+.+.|.|..-+.   .+.-..+.|+|.+ ++-.++...+..+ ..+..++|+++ ++.+.+..+.+|. +.|+.
T Consensus       110 ~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~  188 (314)
T PF11017_consen  110 WQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLT  188 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEee
Confidence            233343456676654322   2233446666665 6778888777777 55555899996 6666679999994 77777


Q ss_pred             CCC
Q 025712          230 VST  232 (249)
Q Consensus       230 ~~~  232 (249)
                      |++
T Consensus       189 Yd~  191 (314)
T PF11017_consen  189 YDD  191 (314)
T ss_pred             hhh
Confidence            664

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.95  E-value=0.58  Score=38.74  Aligned_cols=40  Identities=20%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|...++.+...|+ .|+++.+++++.+.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~   46 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANA   46 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHH
Confidence            478999998 69999999998889999 68888887755443

>PRK05854 short chain dehydrogenase; Provisional

Probab=91.91  E-value=0.57  Score=40.41  Aligned_cols=40  Identities=20%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .+++++|+| ++++|.+.+......|+ +|+.+.++.++.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~   53 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEA   53 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            478999998 79999998888888999 78888888776543

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.87  E-value=0.59  Score=40.80  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+| +|++|...++.+...|+ +|+++++++++.+.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~   48 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEAL   48 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            467899998 79999999998888999 788888888766543

>PRK07904 short chain dehydrogenase; Provisional

Probab=91.86  E-value=1.6  Score=36.32  Aligned_cols=39  Identities=21%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQR  215 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~  215 (249)
                      +..++++||.| +|++|.+.++-+... |+ +|+++++++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~   45 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDP   45 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcch
Confidence            45678999998 799999988766666 47 78888777664

>PRK06194 hypothetical protein; Provisional

Probab=91.84  E-value=0.58  Score=39.49  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|...++.....|+ .|++++++.++.+.+
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA   46 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            367899998 79999999888888999 788888776554433

>PRK08264 short chain dehydrogenase; Validated

Probab=91.82  E-value=0.81  Score=37.34  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|+| +|++|...++.+...|+++|++++++.++.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT   45 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence            467899997 7999999999888899856888877766544

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.81  E-value=0.63  Score=38.47  Aligned_cols=40  Identities=15%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++++++|.| +|++|...+......|+ .++.++++.++.+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~   50 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA   50 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            588999998 79999998888888899 78888888766444

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.80  E-value=0.62  Score=38.42  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|.+|...++.....|+ ++++++++.++.+.+
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   44 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAA   44 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            467999998 79999998888888899 788888887765443

>PRK06483 dihydromonapterin reductase; Provisional

Probab=91.80  E-value=1.5  Score=35.69  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGA  224 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga  224 (249)
                      ++++||.| +|++|.+..+.....|+ +|+++++++++ .+.+++.|+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   48 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGA   48 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCC
Confidence            46899998 69999999988888999 78777766543 344445553

>PRK08198 threonine dehydratase; Provisional

Probab=91.76  E-value=2.2  Score=38.30  Aligned_cols=51  Identities=18%  Similarity=0.243  Sum_probs=40.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ++.|+..++|..|++....|+.+|.+.+|.+..  +.+|.+.++.+||+.++.
T Consensus        70 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~  122 (404)
T PRK08198         70 ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLH  122 (404)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence            455555568999999999999999977777754  558889999999977653

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=91.75  E-value=1.7  Score=39.49  Aligned_cols=64  Identities=14%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +-+|.+ +|..|+.....|+.+|++.+|.+.  .+..|.+.++.+||+.+.. ..+..+..+..+++.
T Consensus       153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~-~~~~~~a~~~A~~la  219 (431)
T TIGR02035       153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEY-ESDYGVAVEEGRKNA  219 (431)
T ss_pred             ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            345555 799999999999999997777774  4668999999999877654 322234444444443

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.74  E-value=1.8  Score=35.49  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||.| +|++|...++.....|+ .|+.++++.++...+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   43 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV   43 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            468899998 79999999988888999 788887777665444

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=91.73  E-value=0.63  Score=38.29  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ..++++++|.| +|++|...++.....|+ .|++++++.++.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~   51 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEA   51 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Confidence            45789999998 79999998888888899 78888887766433

>PRK05717 oxidoreductase; Validated

Probab=91.72  E-value=1.8  Score=35.80  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      .|++++|+| +|++|...+......|+ +|+.++++.++.+.+ ++++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~   55 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALG   55 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcC
Confidence            478899998 79999998888888899 788887776554443 4444

>PRK08589 short chain dehydrogenase; Validated

Probab=91.70  E-value=1.6  Score=36.62  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++||.| ++++|.+.++.....|+ +|+++++++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~   40 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE   40 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence            478999998 69999998888888899 788888773

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.64  E-value=0.96  Score=35.23  Aligned_cols=45  Identities=29%  Similarity=0.401  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ..-.|++++|.|-|-+|.-.++.++.+|+ +|++++.++-+.-.+.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~   63 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAA   63 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhh
Confidence            34579999999999999999999999999 8999988886655543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.59  E-value=0.65  Score=39.20  Aligned_cols=40  Identities=35%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||+| +|++|.+.+......|+ +|+.++++.++.+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~   45 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQ   45 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            478899998 79999998888888999 78888877766543

>PRK09242 tropinone reductase; Provisional

Probab=91.49  E-value=0.7  Score=38.26  Aligned_cols=41  Identities=29%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|...++.....|+ ++++++++.++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            478999998 69999999999888999 788888877765544

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=91.45  E-value=0.7  Score=38.20  Aligned_cols=40  Identities=30%  Similarity=0.586  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +++.++++.++.+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~   48 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEL   48 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            478899998 79999998888888999 78888887766543

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.45  E-value=1.9  Score=36.01  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +++++||.| +|++|...++.+...|+ +|+.+.++.++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~   46 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAA   46 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            468999998 69999999999999999 78888887666443

>PRK08251 short chain dehydrogenase; Provisional

Probab=91.42  E-value=1.5  Score=35.93  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++|.| +|++|...++.....|+ .++.++++.++.+.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~   42 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEEL   42 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            56899998 79999988877777898 788888887766554

>PRK06181 short chain dehydrogenase; Provisional

Probab=91.40  E-value=0.69  Score=38.41  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++++||.| +|++|...++.+...|+ .|+++++++++.+.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~   40 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLAS   40 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            35789998 69999999998889998 78888888766443

>PRK08643 acetoin reductase; Validated

Probab=91.39  E-value=0.69  Score=38.24  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=32.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||.| +|++|...++.....|+ +|+.++++.++.+.+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~   42 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAA   42 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57889997 79999999988888999 788888877665443

>PRK06179 short chain dehydrogenase; Provisional

Probab=91.37  E-value=0.94  Score=37.80  Aligned_cols=39  Identities=23%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|.| +|++|...++.....|+ +|++++++.++.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~   42 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAA   42 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcc
Confidence            356899998 79999998888888899 7888887765543

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.36  E-value=1.2  Score=36.82  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .++++||.| +|++|...++.....|+ .++.++++.++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            478999998 79999998888888999 78888776654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=91.35  E-value=0.72  Score=32.84  Aligned_cols=42  Identities=36%  Similarity=0.579  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      |+.+||-+|+|. |..++.+++. .++ ++++++.+++-.+.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence            688998888765 7777788884 566 89999999999888865

...

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.29  E-value=0.48  Score=45.29  Aligned_cols=53  Identities=25%  Similarity=0.320  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEecCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAKVS  231 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~~~  231 (249)
                      .+++|+|+|+|..|+.++..++..|+ .|.+.+..+                     ...++++++|++...+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~  382 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCE  382 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCc
Confidence            48999999999999999999999999 677776554                     256777888987766543

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.27  E-value=0.73  Score=39.80  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+| +|++|...++.....|+ +|++++++.++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   46 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAA   46 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            478899998 79999998888888898 788888887765543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.24  E-value=1  Score=33.27  Aligned_cols=51  Identities=22%  Similarity=0.145  Sum_probs=35.1

Q ss_pred             eEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEeCCh----------------------hHHHHHHHcCCCEEecCCC
Q 025712          181 NVMIMGS-GPIGLVTLLAARA-FGAPRIIITDVDV----------------------QRLSIARNLGADETAKVST  232 (249)
Q Consensus       181 ~vlI~G~-g~vG~~ai~la~~-~G~~~vi~~~~~~----------------------~~~~~~~~~ga~~vi~~~~  232 (249)
                      +|.|+|. |-.|.+.++.+.. .+.+-+.++++++                      +.++.+.+- ++.+||++.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-~DVvIDfT~   76 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-ADVVIDFTN   76 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--SEEEEES-
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-CCEEEEcCC
Confidence            6889996 9999999999998 6774455556555                      233333333 899999996

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK07074 short chain dehydrogenase; Provisional

Probab=91.23  E-value=2  Score=35.51  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++|+| +|++|...+..+...|+ ++++++++.++.+.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~   42 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAF   42 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            56899998 69999998888778898 788888887765544

>PRK08246 threonine dehydratase; Provisional

Probab=91.21  E-value=2.5  Score=36.58  Aligned_cols=52  Identities=27%  Similarity=0.427  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ++++|+..-+|..|++....|+..|.+.++.+..  ++.|.+.++.+|++.++.
T Consensus        67 ~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~  120 (310)
T PRK08246         67 PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVV  120 (310)
T ss_pred             cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEe
Confidence            4556554457999999999999999977777643  567899999999976543

>PRK07832 short chain dehydrogenase; Provisional

Probab=91.12  E-value=2.2  Score=35.66  Aligned_cols=38  Identities=32%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++++|+| +|++|...++.+...|+ .++.+++++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~   39 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQ   39 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3688997 79999999998888999 68888877766443

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=91.12  E-value=3  Score=35.62  Aligned_cols=54  Identities=26%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .+++++++...+|..|++....|+..|.+.++.+..  ++.|.+.++.+|++.++-
T Consensus        50 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~  105 (291)
T cd01561          50 LKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILT  105 (291)
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            345666554458999999999999999976666654  578899999999986643

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.11  E-value=1  Score=38.54  Aligned_cols=62  Identities=24%  Similarity=0.334  Sum_probs=38.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcC-C-CEEecCCCCcccHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLG-A-DETAKVSTDIEMWGRY  240 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~g-a-~~vi~~~~~~~~~~~~  240 (249)
                      -.|+.|||+| ++++|++.++=...+|+ +++..|.+.    +..+.+++.| + .++.|.+++ ++..+-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~-eei~~~  104 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDR-EEIYRL  104 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCH-HHHHHH
Confidence            4799999998 67999875555555677 677776554    3344445545 2 356666553 444333

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.09  E-value=2.4  Score=35.12  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh--HHHHHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~~ga  224 (249)
                      .++++||.| ++++|.+.++.....|+ +|+++++++.  ..+.+++.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~   55 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGR   55 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCC
Confidence            578999998 79999999998888999 6777765432  2234444553

>PRK06114 short chain dehydrogenase; Provisional

Probab=91.08  E-value=1.9  Score=35.70  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=29.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++||.| ++++|.+.++.....|+ +++.++++.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~   42 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT   42 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            478999997 79999999998888999 777777654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.08  E-value=0.66  Score=44.46  Aligned_cols=51  Identities=24%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh---------------------HHHHHHHcCCCEEe
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ---------------------RLSIARNLGADETA  228 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~---------------------~~~~~~~~ga~~vi  228 (249)
                      ..+++|+|+|+|..|+.++..+...|+ .|.+++..+.                     ..++++++|++...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~  396 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL  396 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence            358899999999999999999999999 6777765432                     35666777865543

>PRK08303 short chain dehydrogenase; Provisional

Probab=91.07  E-value=1.9  Score=37.05  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+++++|.| ++++|.+.++.....|+ +|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            478999998 68999999988888999 78877765

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.06  E-value=2.1  Score=35.84  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|.| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   50 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAV   50 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478899998 69999999998888999 788888877655433

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=91.05  E-value=0.85  Score=35.51  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+++|.|+|-|+-|.+..+-.|..|.+.+|+........+.+++-|.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf   49 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF   49 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC
Confidence            57899999999999999999999999555555544447888887775

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=91.00  E-value=1.5  Score=39.69  Aligned_cols=47  Identities=17%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      -.+.+++|+|+|+.|.+++..+...|+..+.++.++.++.+.+. +++
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            46889999999999999999999999878999988887755553 354

>PRK08639 threonine dehydratase; Validated

Probab=90.97  E-value=1.9  Score=38.98  Aligned_cols=46  Identities=24%  Similarity=0.386  Sum_probs=37.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGAD  225 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~  225 (249)
                      +.|+..++|..|++....|+.+|.+.+|.+..  +..|.+.++.+||+
T Consensus        74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~  121 (420)
T PRK08639         74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE  121 (420)
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence            34444468999999999999999977777744  45789999999997

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.92  E-value=1  Score=41.39  Aligned_cols=50  Identities=26%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh-----hHHHHHHHcCCCEE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV-----QRLSIARNLGADET  227 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~-----~~~~~~~~~ga~~v  227 (249)
                      ..+++++|+|.|..|..++.+++..|+ .|.+++..+     ...+.+++.|+...
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~   68 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVR   68 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence            357899999999999999999999999 688887543     22345666676443

>PRK08813 threonine dehydratase; Provisional

Probab=90.91  E-value=2.2  Score=37.60  Aligned_cols=47  Identities=15%  Similarity=0.179  Sum_probs=38.4

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +|. .+|..|++....|+.+|++.+|.+.  .+..|.+.++.+|++.+..
T Consensus        84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~  133 (349)
T PRK08813         84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQH  133 (349)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence            455 4899999999999999997777773  4668999999999977653

>PRK06197 short chain dehydrogenase; Provisional

Probab=90.87  E-value=0.74  Score=39.40  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|.| +|++|.+.++.....|+ +++.+.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            578999998 79999998888888899 7888877766644

>PRK06352 threonine synthase; Validated

Probab=90.87  E-value=2.6  Score=37.13  Aligned_cols=64  Identities=16%  Similarity=0.118  Sum_probs=44.3

Q ss_pred             eEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          181 NVMIM-GSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       181 ~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .-+|. .+|..|.+....|+.+|.+.++.+..   +.+|...++.+|++.++. ..+..+..+.+.++.
T Consensus        76 ~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~-~~~~~~~~~~a~~~~  143 (351)
T PRK06352         76 EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISI-QGNFDEALKSVRELA  143 (351)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            34555 57999999999999999977777743   467999999999976543 222234444444443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.85  E-value=0.92  Score=35.97  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|.|+|+|..|.....++...|+ .|..++.+++.++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~   38 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA   38 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh
Confidence            57899999999988888888899 899999998876554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=90.82  E-value=1.1  Score=36.87  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=33.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +++|.|+|.+|...++.+...|. .|++++.++++.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~   38 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEE   38 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHH
Confidence            67889999999999999999999 79999999988777

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=90.76  E-value=0.82  Score=37.44  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      .++++||+| +|.+|...+......|+ .|++++++.++.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~   43 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDA   43 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            467899998 79999998888888899 788888875544

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.74  E-value=0.85  Score=37.46  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++++++|.| +|++|...++.....|+ +++.+.++.++.+.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~   44 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAER   44 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHH
Confidence            467899998 79999998887777898 78888777665443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.73  E-value=0.73  Score=34.97  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      |+|.|+|++|.......+..|. .|..+.+.+ +.+.+++.|...
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~   43 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTI   43 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEE
Confidence            6789999999887777777998 788887777 778787766543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.72  E-value=2.6  Score=35.53  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=28.7

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||.|+   +++|.+.++.....|+ +|+.+++++
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~   41 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE   41 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH
Confidence            4789999984   5899998888888999 788777764

>PLN02686 cinnamoyl-CoA reductase

Probab=90.72  E-value=1.2  Score=39.31  Aligned_cols=45  Identities=16%  Similarity=0.084  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...+++|||+| +|.+|...+..+...|+ .|+++.++.++.+.+++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~   95 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE   95 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            35578999998 79999999998889999 67776666655544444

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.67  E-value=2.4  Score=35.67  Aligned_cols=36  Identities=25%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          177 GPETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       177 ~~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -.++++||.|+   +++|.+.++.....|+ +|+.+.+++
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~   46 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD   46 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence            45789999984   6899998888888999 777776553

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=90.57  E-value=2.3  Score=34.69  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++++|.| +|++|...+......|+ .|+..+++.++.+.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~   46 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEAL   46 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            467999998 79999998888888998 777777776665544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=90.56  E-value=1.5  Score=31.60  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=38.3

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ......++++++-+|+|. |..+..+++..+...+++++.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            445667788888888876 888889998875458999999988887764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06484 short chain dehydrogenase; Validated

Probab=90.55  E-value=1.7  Score=40.19  Aligned_cols=46  Identities=24%  Similarity=0.420  Sum_probs=37.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      .++++||+| ++++|.+.++.....|+ +|+.++++.++.+.+ ++++.
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGP   51 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            578999998 78999999998889999 788888888776554 44554

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.51  E-value=2.4  Score=35.12  Aligned_cols=41  Identities=27%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++||.| +|++|...++.....|+ +|++++++.++.+.+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~   43 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAA   43 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            5789998 79999999988888999 78888888887666543

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.47  E-value=3.1  Score=34.07  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+++++|.| +|++|...+..+...|+ .|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            468899998 69999999998888999 677776654

>TIGR02079 THD1 threonine dehydratase

Probab=90.45  E-value=2.5  Score=38.15  Aligned_cols=43  Identities=14%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCC
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGAD  225 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~  225 (249)
                      +|. ++|..|++....|+.+|.+.++.+..  +..|.+.++.+||+
T Consensus        67 vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~  112 (409)
T TIGR02079        67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE  112 (409)
T ss_pred             EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence            454 58999999999999999977777743  46789999999997

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.38  E-value=1  Score=38.11  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ...+++++|+|+|+.|.+++......|. .+.+++++.++.+.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3457899999999999998888888898 788888887775443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=90.36  E-value=1.2  Score=39.85  Aligned_cols=49  Identities=20%  Similarity=0.419  Sum_probs=41.9

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +..+++++++||-+|+| .|..+..+++..|+ +|++++.+++..+.+++.
T Consensus       161 ~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~  209 (383)
T PRK11705        161 RKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER  209 (383)
T ss_pred             HHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence            56788999999999875 47778888988898 899999999999998764

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=90.33  E-value=3.4  Score=34.13  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++..|+..++|..|.+....|+..|.+.++.+..  +..+.+.++.+|++.+.. ....++..+.++++.
T Consensus        49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~-~~~~~~~~~~a~~~~  117 (244)
T cd00640          49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLV-PGDFDDAIALAKELA  117 (244)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence            3444444457899999999999999966666643  678888999999876543 332234444444444

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=90.33  E-value=3.3  Score=37.29  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      -+|.. +|..|++....|+.+|++.+|.+  ..+++|.+.++.+|++.+.. ..+.++..+..+++.
T Consensus       136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v-~~~~~~a~~~a~~la  201 (404)
T cd06447         136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEY-ETDYSKAVEEGRKQA  201 (404)
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence            45555 79999999999999999777777  34779999999999987654 222234444444443

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PLN02970 serine racemase

Probab=90.32  E-value=2.6  Score=36.79  Aligned_cols=50  Identities=22%  Similarity=0.190  Sum_probs=39.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +.++...+|..|.+....|+.+|++.++.+.  .+++|.+.++.+|++.+..
T Consensus        76 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~  127 (328)
T PLN02970         76 KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWC  127 (328)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEe
Confidence            3444446899999999999999997666664  3678899999999887653

>PRK08263 short chain dehydrogenase; Provisional

Probab=90.31  E-value=2.1  Score=35.94  Aligned_cols=42  Identities=29%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++++||.| +|++|...++.+...|+ .|+.++++.++.+.+.+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~   45 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAE   45 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            46899998 79999998888888898 78888888877665544

>PRK07476 eutB threonine dehydratase; Provisional

Probab=90.27  E-value=2.3  Score=36.91  Aligned_cols=62  Identities=21%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|. .+|..|.++...|+..|.+.++.+..  ++.|.+.++.+|++.++. .....+..+...++.
T Consensus        70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~-~~~~~~~~~~a~~~~  134 (322)
T PRK07476         70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIV-GRSQDDAQAEVERLV  134 (322)
T ss_pred             EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            444 57999999999999999976666643  567899999999986653 322233444444443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.27  E-value=1.1  Score=36.54  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .+++++|.| +|++|...+..+...|+ .|+.++++.++.+.
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~   46 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKA   46 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            357899998 79999998888888999 78888887766443

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=90.27  E-value=1.2  Score=36.44  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcCCCEE
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGADET  227 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~ga~~v  227 (249)
                      |+|.| +|.+|...++.+...++ .|.++.++.  +..+.+++.|++.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv   48 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV   48 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe
Confidence            68888 69999999999999998 566665654  34666778888654

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06720 hypothetical protein; Provisional

Probab=90.27  E-value=2.8  Score=32.78  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      +++.++|.| ++++|...+......|+ +++.++++.+..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            578899998 68899998888888898 7888887766543

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=90.24  E-value=2.1  Score=32.07  Aligned_cols=49  Identities=20%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             EEEEc-CChHHHHHHHHHHHcC--CCeEEEEeCChhH---HHHHHHcCCCEEecCC
Q 025712          182 VMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQR---LSIARNLGADETAKVS  231 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G--~~~vi~~~~~~~~---~~~~~~~ga~~vi~~~  231 (249)
                      |.|+| +|++|.-++++.+...  + ++++.....+-   .+.+++|....++..+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~   55 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIAD   55 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESS
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcC
Confidence            56788 7999999999999987  7 67777543322   3444678999888665

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=90.17  E-value=3.1  Score=37.04  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=38.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .++...+|.-|++....|+.+|.+.++.+..  +.+|.+.++.+|++.+..
T Consensus        50 ~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~  100 (380)
T TIGR01127        50 GVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILH  100 (380)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEE
Confidence            3433468999999999999999977776643  457899999999977653

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.14  E-value=3.2  Score=34.39  Aligned_cols=38  Identities=29%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++||.| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   40 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKA   40 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            688998 79999998888888899 788888887665443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.04  E-value=0.93  Score=42.32  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .+++++|+|+|+.|.+++..+...|+ +++++.++.++.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            46889999999999999999999999 8888888877766653

>PRK06398 aldose dehydrogenase; Validated

Probab=90.04  E-value=1.3  Score=36.78  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| ++++|.+.+......|+ +|+.+++++.
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~   41 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEP   41 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcc
Confidence            468999998 79999999999988999 7777766543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.01  E-value=0.86  Score=41.62  Aligned_cols=47  Identities=30%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .+++|+|+|.|+.|..++++++..|+ .|.+.|..+.....+++.|+.
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~~l~~~g~~   54 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT   54 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHHHHHhcCcc
Confidence            36789999999999999999999999 799998766555445555543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=89.99  E-value=3.1  Score=34.42  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||.| +|++|.+.++.....|+ .++++.++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999998 79999999998888999 67777666

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.91  E-value=2.8  Score=32.43  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      .|++|+|.|+|.+|..-++.....|+ .|.+++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            57899999999999998888888999 566663

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.90  E-value=3.1  Score=34.72  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             CCCeEEEEc---CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG---SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G---~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++||.|   ++++|.+..+.....|+ +|+.+.+.+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~   42 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD   42 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            578999998   35899998888888999 677765443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=89.87  E-value=1.2  Score=38.42  Aligned_cols=75  Identities=20%  Similarity=0.423  Sum_probs=41.4

Q ss_pred             CCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          143 AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       143 ~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...++.+.+++.+-.+.--.+ .....++... .++|++||=.|+|+ |.+++-.++ .|++.|+++|.++.-.+.+++
T Consensus       128 ~~~~I~idPg~AFGTG~H~TT-~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~  202 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHHPTT-RLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARE  202 (295)
T ss_dssp             TSEEEEESTTSSS-SSHCHHH-HHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred             CcEEEEECCCCcccCCCCHHH-HHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence            344555555554443321111 1112233443 57888888777543 455544444 599899999998877666644

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=89.81  E-value=1.2  Score=40.51  Aligned_cols=40  Identities=13%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      +++..+. -.|.+|+|.|.|.||..+++++..+|+ +|+++.
T Consensus       218 ~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVS  258 (444)
T PRK14031        218 MLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMS  258 (444)
T ss_pred             HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            3444333 368999999999999999999999999 677753

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=89.76  E-value=3.6  Score=35.63  Aligned_cols=50  Identities=18%  Similarity=0.134  Sum_probs=39.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEe
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA  228 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi  228 (249)
                      +++++...+|..|.+....|+..|.+.++.+..  +..+.+.++.+|++.+.
T Consensus        70 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~  121 (324)
T cd01563          70 VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLA  121 (324)
T ss_pred             CCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEE
Confidence            455554458999999999999999976666643  56889999999987765

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=89.75  E-value=0.89  Score=36.24  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=39.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      +|.|+|.|-+|+-.....-..|. .|+++|.++++.+.+++ |-.++   .  ++.+.+.+++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~-g~~p~---~--E~~l~~ll~~~   58 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN-GELPI---Y--EPGLDELLKEN   58 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT-TSSSS------CTTHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh-ccccc---c--ccchhhhhccc
Confidence            68899999999988888888999 89999999999999875 33322   1  25555555554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.74  E-value=1.2  Score=42.53  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=41.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .++++|.|.|.+|+...+..+..|. .+++++.++++.+.+++.|...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v  446 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKV  446 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeE
Confidence            3678999999999999999999999 7999999999999998887543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.68  E-value=2.8  Score=34.34  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      .++++||+| +|++|...+......|+ +++.+ .++.++.+.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~   46 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEAL   46 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            357899998 79999999988888999 56654 3344444433

>PRK08638 threonine dehydratase; Validated

Probab=89.63  E-value=3.4  Score=36.21  Aligned_cols=65  Identities=11%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +.|+..++|..|.+....|+..|.+.++.+..  +++|.+.++.+||+.++- ..+..+..+..+++.
T Consensus        76 ~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~-~~~~~~~~~~a~~~a  142 (333)
T PRK08638         76 KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLH-GDNFNDTIAKVEEIV  142 (333)
T ss_pred             CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEE-CcCHHHHHHHHHHHH
Confidence            34554568999999999999999977777654  567899999999987753 222233434444443

>PRK14030 glutamate dehydrogenase; Provisional

Probab=89.60  E-value=1.4  Score=40.15  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             hhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712          156 EEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT  209 (249)
Q Consensus       156 ~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~  209 (249)
                      .+|.....+...-.+++..+. -.|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       204 ~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav  257 (445)
T PRK14030        204 PEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGA-KVVTI  257 (445)
T ss_pred             CCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            334333333333334444443 368999999999999999999999999 77774

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=89.57  E-value=5.1  Score=36.44  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ....+.+|++++-..+|..|.+....|+.+|.+.++.+..  +++|.+.++.+||+.+.-
T Consensus        55 ~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~  114 (454)
T TIGR01137        55 ASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRT  114 (454)
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEc
Confidence            3445567777655568999999999999999966666643  568999999999987654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK07048 serine/threonine dehydratase; Validated

Probab=89.50  E-value=3.1  Score=36.11  Aligned_cols=50  Identities=22%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +.|+..++|..|.+....|+.+|++.++.+..  ++.|.+.++.+|++.++.
T Consensus        73 ~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~  124 (321)
T PRK07048         73 AGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTY  124 (321)
T ss_pred             CcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence            34444468999999999999999976666643  457889999999987654

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.43  E-value=3  Score=34.11  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=25.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT  209 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~  209 (249)
                      ++++++|.| +|++|...++.....|+ ++++.
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~   33 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAG   33 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEE
Confidence            367889998 79999999999999999 56654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.43  E-value=1.2  Score=42.18  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=41.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      ++++|.|.|.+|+...+..+..|. .++++|.++++.+.+++.|...
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v  446 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKV  446 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeE
Confidence            578889999999999999999999 7999999999999998887543

>PRK06484 short chain dehydrogenase; Validated

Probab=89.41  E-value=3.1  Score=38.45  Aligned_cols=47  Identities=28%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA  224 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga  224 (249)
                      ..++++||.| ++++|.+.++.....|+ +|+.++++.++.+.+.+ ++.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~  315 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGD  315 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            3578899998 79999998888888999 78989888887776654 443

>PRK07102 short chain dehydrogenase; Provisional

Probab=89.41  E-value=1.3  Score=36.31  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++++|.| +|++|...++.....|+ .|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            5789997 79999998888888899 78888888876544

>PRK06721 threonine synthase; Reviewed

Probab=89.30  E-value=3.8  Score=36.11  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             CeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEec
Q 025712          180 TNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~  229 (249)
                      ...+|. .+|..|.++...|+..|.+.++.+..   ++.|.+.++.+||+.++.
T Consensus        75 ~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~  128 (352)
T PRK06721         75 SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISI  128 (352)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEE
Confidence            344554 48999999999999999977777753   357899999999987654

>PLN03139 formate dehydrogenase; Provisional

Probab=89.29  E-value=0.93  Score=40.52  Aligned_cols=46  Identities=22%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|++|.|+|.|.+|...++.++.+|+ ++++.+++....+..++.|+
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence            68899999999999999999999999 78888876544344444443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=89.28  E-value=1.4  Score=36.76  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .+++++|.| ++++|...+......|+ +++.+++++++.+.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~   49 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDK   49 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            568899998 79999988887788899 68888877766543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.28  E-value=3.8  Score=34.31  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+++++|.|+ +  ++|.+..+.....|+ +++.+++++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch
Confidence            5789999984 3  899998888888999 677776653

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.26  E-value=1.5  Score=36.77  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      -+|.+++|.|.|.||+.+.+++..+|+ +++++..
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD   69 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD   69 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            368999999999999999999999999 7886643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=89.26  E-value=2.4  Score=33.76  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=42.5

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH----HcCCCEEe
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETA  228 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~~ga~~vi  228 (249)
                      +...++++|+.++=.|+|. |...+++++.....++++++++++..+..+    +||.+.+.
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~   87 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE   87 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEE
Confidence            3557889999776667654 666778886666668999999999988874    57876443

>PLN00011 cysteine synthase

Probab=89.23  E-value=6.7  Score=34.12  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             HHHcCCCCC-CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          171 CRRANVGPE-TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       171 l~~~~~~~g-~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .+...+.++ ++|+...+|..|++....|+.+|.+.++.+..  ++.|.++++.+|++.++.
T Consensus        60 ~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~  121 (323)
T PLN00011         60 EDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLT  121 (323)
T ss_pred             HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEE
Confidence            345567777 45544348999999999999999976666643  468999999999987653

>PRK07574 formate dehydrogenase; Provisional

Probab=89.14  E-value=1.1  Score=40.11  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|++|.|+|.|.+|+...+.++.+|+ +|++.+++.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence            57889999999999999999999999 899998765

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.13  E-value=1.6  Score=40.11  Aligned_cols=49  Identities=14%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCCCE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE  226 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga~~  226 (249)
                      -.+++|+|+|.|+.|.+++.+++..|+ .|.+.+++..+.. +++++|+..
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~~   62 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGVAD   62 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCcEE
Confidence            456789999999999999999999999 8899987655443 345566543

>PRK02991 D-serine dehydratase; Provisional

Probab=89.10  E-value=2.7  Score=38.33  Aligned_cols=63  Identities=14%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      -+|.+ +|..|++....|+.+|.+.+|.+.  .++.|.+.++.+|++.++ +..+..+..+..+++.
T Consensus       159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~-~~~~~~~a~~~A~~la  224 (441)
T PRK02991        159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVE-YEGDYGVAVEEGRKAA  224 (441)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEE-ECCCHHHHHHHHHHHH
Confidence            35555 799999999999999998777774  477999999999997765 2322234444444443

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.08  E-value=2.6  Score=34.57  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~~~~  216 (249)
                      ++++++|.| +|++|...+......|+ .++. ..++.++.
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~   42 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAA   42 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            467899998 79999999888888999 5554 45555544

>PRK07409 threonine synthase; Validated

Probab=89.05  E-value=3.9  Score=36.02  Aligned_cols=63  Identities=13%  Similarity=0.089  Sum_probs=43.6

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC---hhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD---VQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      .-+|.. +|..|.++...|+..|.+.++.+..+   ..|.+.++.+|++.++- .....+..+.++++
T Consensus        79 ~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~-~~~~~~~~~~a~~l  145 (353)
T PRK07409         79 KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQI-DGNFDDALEIVREL  145 (353)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEE-CCCHHHHHHHHHHH
Confidence            345554 79999999999999999767777643   57899999999877653 22223444444443

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=89.01  E-value=3.7  Score=36.05  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             HHHHHHHcCCC-CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE--eCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          167 GVHACRRANVG-PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       167 a~~~l~~~~~~-~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~--~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      ||+.+...... .-..-+|.. +|.=|+....-|+.+|.+.+|.+  ..+..|.+..+.+|++.++. ....++-.+..+
T Consensus        60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~-g~~~dda~~~a~  138 (347)
T COG1171          60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILH-GDNFDDAYAAAE  138 (347)
T ss_pred             HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHH
Confidence            56665443222 122225554 79999999999999999888887  44678899999999966553 433344444444


Q ss_pred             HHHH
Q 025712          243 QWVQ  246 (249)
Q Consensus       243 ~~~~  246 (249)
                      ++++
T Consensus       139 ~~a~  142 (347)
T COG1171         139 ELAE  142 (347)
T ss_pred             HHHH
Confidence            4443

>PRK07775 short chain dehydrogenase; Provisional

Probab=89.00  E-value=4.2  Score=34.11  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      +.++++|+| +|++|.+.++.+...|+ +|+++.++.++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            346899998 79999999988888999 7777777665543

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=88.99  E-value=1.5  Score=36.20  Aligned_cols=40  Identities=18%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .+++++|.| ++++|...+......|+ .++.++++.++.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~   50 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            478999998 79999999888888999 67777777665443

>PRK06110 hypothetical protein; Provisional

Probab=88.92  E-value=5.1  Score=34.81  Aligned_cols=48  Identities=27%  Similarity=0.344  Sum_probs=38.9

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      .+|.+ +|..|++....|+.+|.+.+|.+..  ++.|.+.++.+|++.+..
T Consensus        72 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~  122 (322)
T PRK06110         72 GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEH  122 (322)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence            35655 7999999999999999977777753  467889999999887653

>PRK05638 threonine synthase; Validated

Probab=88.89  E-value=3.7  Score=37.43  Aligned_cols=65  Identities=11%  Similarity=0.120  Sum_probs=45.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      .++|+...+|..|.+....|+..|.+.+|.+..  +..|...++.+||+.+.. ..+..++.+..+++
T Consensus       112 ~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v-~~~~~~~~~~a~~~  178 (442)
T PRK05638        112 ANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRY-GESVDEAIEYAEEL  178 (442)
T ss_pred             CCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEE-CCCHHHHHHHHHHH
Confidence            344444348999999999999999977777743  568899999999987654 23334444444443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=88.82  E-value=1.1  Score=39.15  Aligned_cols=47  Identities=23%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .|+++-|+|.|.+|++..+.++.+|. .++..+++.. .+..+++++.+
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y  191 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARY  191 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCcee
Confidence            58999999999999999999999999 7888877654 33333344444

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.80  E-value=4.4  Score=33.31  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=59.6

Q ss_pred             HHHHHHHcCCCCCCeEEEE-cCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIM-GSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~-G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      --..|..+.+..-+.+++. |..-+-..++++++. +|..++++-..++...+.++++|+++++...   ..+...+..
T Consensus        55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe---~~~~~~l~~  130 (225)
T COG0569          55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPE---KLAAKRLAR  130 (225)
T ss_pred             CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHH---HHHHHHHHH
Confidence            3445677888888888775 788889999999977 8999999999999999999999999998544   455555544

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.79  E-value=1.9  Score=36.84  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=42.1

Q ss_pred             HHHcC-CCCCCeEEEEcCCh-HHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEecCCC
Q 025712          171 CRRAN-VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVST  232 (249)
Q Consensus       171 l~~~~-~~~g~~vlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~~~~  232 (249)
                      ++..+ --.|++++|.|.|+ +|.....++...|+ +|..+.+....+  .+. .+++.+|+...
T Consensus       150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L--~~~~~~aDIvI~AtG  211 (283)
T PRK14192        150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNL--PELVKQADIIVGAVG  211 (283)
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhH--HHHhccCCEEEEccC
Confidence            34443 35789999999876 99999999999999 777776533322  222 36888887663

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.74  E-value=1.6  Score=36.23  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=38.1

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      ++||.| +|.+|...++-+...|. .|.+..++.++..... .+++.+.
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~-~v~~~~r~~~~~~~~~-~~v~~~~   48 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGH-EVRAAVRNPEAAAALA-GGVEVVL   48 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCC-EEEEEEeCHHHHHhhc-CCcEEEE
Confidence            688987 79999999999999998 7888888988888887 5555544

>PRK08329 threonine synthase; Validated

Probab=88.70  E-value=4.3  Score=35.71  Aligned_cols=50  Identities=22%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      ++|+...+|..|.+....|+..|.+.+|.+.  .+..|+..++.+|++.++.
T Consensus       105 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v  156 (347)
T PRK08329        105 NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFV  156 (347)
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEE
Confidence            4454446899999999999999997666664  3457899999999977653

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.69  E-value=1  Score=38.89  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +..+|.|+|.|.+|.-+..+|--+|+ .|...+.+.+|+..++.+-..++--..+....+.+++.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~  231 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKK  231 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhh
Confidence            34566778999999999999999999 799999999999999875433332223333455555543

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.66  E-value=1.5  Score=36.99  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++|.|+|++|.+.+.... .|+ +|+.+++++++.+.+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~   40 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAA   40 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence            357788898899998887774 798 788888877665433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.61  E-value=1.6  Score=37.28  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|+|+|+|.+|.+........|. .|..++++.++.+.+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~   44 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL   44 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC
Confidence            58899999999987777777888 68888887788877776665

>PRK06381 threonine synthase; Validated

Probab=88.57  E-value=5  Score=34.75  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~  231 (249)
                      |.+.+|.+ +|..|.+....|+..|++.++.+..  +..|.+.++.+|++.++...
T Consensus        62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~  117 (319)
T PRK06381         62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG  117 (319)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC
Confidence            44555665 7999999999999999976666643  46889999999999876543

>PRK14967 putative methyltransferase; Provisional

Probab=88.53  E-value=2.5  Score=34.56  Aligned_cols=49  Identities=27%  Similarity=0.407  Sum_probs=38.2

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +....+++++++|-.|+|. |..++.+++. ++.++++++.+++..+.+++
T Consensus        29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            3445678899999999877 8888888875 55589999999888776544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=88.50  E-value=2.8  Score=36.59  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHH----HcCCCEEe
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLGADETA  228 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~----~~ga~~vi  228 (249)
                      .++...++++++||.+|+|. |..++.+++..+. ..|++++.+++..+.++    ++|.+.+.
T Consensus        72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~  134 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVI  134 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE
Confidence            34556788999999999874 9999999998764 36999999988766554    46665433

>PRK06128 oxidoreductase; Provisional

Probab=88.43  E-value=3.6  Score=35.04  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .++++||.| +|++|.+.+......|+ +|+.+..
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~   87 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYL   87 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            478999998 79999998888888999 6766644

>PRK09224 threonine dehydratase; Reviewed

Probab=88.39  E-value=3.8  Score=38.08  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             EEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          182 VMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       182 vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      -+|. ++|.-|++....|+..|.+.+|.+..  +..|.+.++.+|++.++.
T Consensus        70 gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~  120 (504)
T PRK09224         70 GVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLH  120 (504)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence            3554 68999999999999999977777743  457888999999977654

>PRK12367 short chain dehydrogenase; Provisional

Probab=88.39  E-value=2.7  Score=34.94  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=29.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+++++|.| +|++|.+.++.....|+ .|+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            368999998 69999999988888999 788877665

>PRK12743 oxidoreductase; Provisional

Probab=88.35  E-value=4.3  Score=33.53  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQR  215 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~  215 (249)
                      ++++||.| +|++|...++.+...|+ +|+.+ .++.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~   39 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEG   39 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHH
Confidence            57899998 79999999999999999 66665 344444

>PRK06924 short chain dehydrogenase; Provisional

Probab=88.34  E-value=3.1  Score=34.11  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-hHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIA  219 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~~  219 (249)
                      ++++|.| +|++|...++-....|+ .|+++++++ ++.+.+
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~   42 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKL   42 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHH
Confidence            4789998 79999998888888899 788887765 343333

>PRK07791 short chain dehydrogenase; Provisional

Probab=88.29  E-value=4.4  Score=34.34  Aligned_cols=35  Identities=34%  Similarity=0.501  Sum_probs=28.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      -.++++||.| ++++|.+.++.....|+ ++++++.+
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~   39 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   39 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCC
Confidence            3578999998 79999998888888999 67777554

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.24  E-value=2.4  Score=33.26  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=38.7

Q ss_pred             CCCCCeEEEEcCCh-HHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCCCEEecCCC
Q 025712          176 VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVST  232 (249)
Q Consensus       176 ~~~g~~vlI~G~g~-vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga~~vi~~~~  232 (249)
                      --.+++++|.|+|. +|..++..++..|+ ++..+.++.+. .+.++  .++.+|....
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~~~l~--~aDiVIsat~   96 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLKEHTK--QADIVIVAVG   96 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHHHHHh--hCCEEEEcCC
Confidence            45799999999986 59988899988999 67777666433 33333  4676665544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.19  E-value=4  Score=37.05  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +++++||+| +|++|...++.+...|+ +++++++.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999998 69999999999889999 78877663

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=88.14  E-value=4.7  Score=36.10  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             CCCCeEEEEc-CChHHHH--HHHHHHHcCCCeEEEEe
Q 025712          177 GPETNVMIMG-SGPIGLV--TLLAARAFGAPRIIITD  210 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~--ai~la~~~G~~~vi~~~  210 (249)
                      ..++++||+| ++++|++  ..+.+ ..|+ .++++.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~   73 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVF   73 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEe
Confidence            4468899998 7899999  44555 7899 667775

>PRK07577 short chain dehydrogenase; Provisional

Probab=88.14  E-value=2.8  Score=33.90  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .+++++|.| +|++|...++.+...|. +|+++.++.++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            367899998 79999998888888998 78888765443

>PRK06523 short chain dehydrogenase; Provisional

Probab=88.11  E-value=1.1  Score=37.02  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++||.| +|++|...++.....|+ +|+++.++.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence            578999998 79999998888888899 688777654

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=88.06  E-value=4  Score=37.84  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=44.0

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|. .+|.-|++....|+..|.+.+|.+..  +..|.+.++.+|++.+..-. ..+++.+...++.
T Consensus        68 VV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~-~~d~a~~~a~~la  132 (499)
T TIGR01124        68 VIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA-NFDDAKAKAIELS  132 (499)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc-CHHHHHHHHHHHH
Confidence            454 58999999999999999977777743  46789999999997765422 2234444444443

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PLN00203 glutamyl-tRNA reductase

Probab=88.03  E-value=1.4  Score=40.97  Aligned_cols=43  Identities=16%  Similarity=0.450  Sum_probs=37.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +.+|+|+|+|..|.+++..+...|+..++++.++.++.+.+.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            7899999999999999999999998789999899888766543

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=87.95  E-value=1.4  Score=38.29  Aligned_cols=45  Identities=24%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH---HHHHHHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR---LSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~---~~~~~~~g  223 (249)
                      .+.+|+|.| +|-+|.+.+.....+|+ +|.++.+++++   .+.+++|.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~   53 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLE   53 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcc
Confidence            578999998 69999999999999999 79999887766   33566664

>PLN02477 glutamate dehydrogenase

Probab=87.85  E-value=2.1  Score=38.57  Aligned_cols=40  Identities=15%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             HHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712          169 HACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT  209 (249)
Q Consensus       169 ~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~  209 (249)
                      .+++..+. -.|.+|+|.|.|.||+.+++++...|+ +|+++
T Consensus       195 ~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaV  235 (410)
T PLN02477        195 ALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAV  235 (410)
T ss_pred             HHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEE
Confidence            34444333 368999999999999999999999999 77755

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=87.84  E-value=3.9  Score=36.46  Aligned_cols=64  Identities=22%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ..-+|.+ +|..|+++...|+.+|++.+|.+.  .++.|.+.++.+|++.++. ....+++.+..+++
T Consensus        94 ~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v-~~~~~~a~~~a~~~  160 (376)
T TIGR01747        94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTIT-DMNYDDTVRLAMQM  160 (376)
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE-CCCHHHHHHHHHHH
Confidence            4445555 799999999999999997777774  3568899999999876653 32223444444443

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.78  E-value=4.8  Score=34.34  Aligned_cols=49  Identities=29%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCE
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE  226 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~  226 (249)
                      -.++.|+|.| ++++|.+.+.-.-..|+ .++.+.+..++++.+    ++.+..+
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~   63 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLE   63 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcC
Confidence            3678999999 68999887777777888 566665666655555    4555433

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=87.77  E-value=1.7  Score=39.19  Aligned_cols=39  Identities=21%  Similarity=0.419  Sum_probs=31.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .+++++|.| +|++|.+.+......|+ +|+++++++++.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            478999998 79999998888888899 7888877766543

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=87.75  E-value=1.7  Score=36.16  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~  216 (249)
                      +++++||.| ++++|.+.+......|+ .|+.+. +++++.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   46 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEA   46 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            578999998 69999999988888999 666663 344443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.72  E-value=2  Score=38.93  Aligned_cols=43  Identities=21%  Similarity=0.406  Sum_probs=36.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga  224 (249)
                      +++|.|.|.+|...++.....|. .+++++.++++.+.+++ .|.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~   45 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDV   45 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCE
Confidence            68889999999999999999998 78899888888888765 543

>PLN02928 oxidoreductase family protein

Probab=87.68  E-value=1.2  Score=39.35  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|+++.|+|.|.+|..+++.++.+|+ +|++.+++
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            57899999999999999999999999 89998765

>PLN02356 phosphateglycerate kinase

Probab=87.68  E-value=3  Score=37.72  Aligned_cols=56  Identities=20%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      ...+++..|+-..+|..|++....|+.+|++.++.+.  .+++|.+.++.+||+.+..
T Consensus        99 g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v  156 (423)
T PLN02356         99 GQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERV  156 (423)
T ss_pred             CccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence            3444666544346899999999999999997666664  3679999999999987653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.66  E-value=2.2  Score=38.64  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~  225 (249)
                      .+++++|+|.|+.|.++..++...|+ .|++.+.+.    ...+.+++.|..
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~   54 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK   54 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE
Confidence            46889999988899999999999999 788887543    222445555543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=87.63  E-value=1.9  Score=37.12  Aligned_cols=45  Identities=31%  Similarity=0.401  Sum_probs=37.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|+|.+|......++..|. ..|++.++++++.+.+++.|+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~   52 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL   52 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence            679999999999998888888884 368889999988888877775

>PRK08526 threonine dehydratase; Provisional

Probab=87.57  E-value=5.3  Score=36.00  Aligned_cols=62  Identities=18%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             EEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          183 MIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|.+ +|.-|++....|+.+|.+.+|.+..  +..|.+.++.+||+.++.- .+..+..+..+++.
T Consensus        71 VV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a  135 (403)
T PRK08526         71 VIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKG-DNYDEAYAFALEYA  135 (403)
T ss_pred             EEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHH
Confidence            4555 7999999999999999987777744  4588889999999877642 22233434444433

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=87.55  E-value=3  Score=34.48  Aligned_cols=45  Identities=16%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~g  223 (249)
                      .++++||.| +|++|.+.++.....|+ +|+.++..+  +..+.+++.+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~   56 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALG   56 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcC
Confidence            478999998 79999999998888999 677775433  2233444444

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=87.52  E-value=4.6  Score=31.79  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-------hHHHHHHHcCCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-------QRLSIARNLGAD  225 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-------~~~~~~~~~ga~  225 (249)
                      ++||.| .|++|...++.....|..+++.+.++.       +..+.+++.|..
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~   54 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR   54 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc
Confidence            578887 799999988888888888999998872       344555666764

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=87.49  E-value=1.9  Score=37.61  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      =.|++|.|+|.|..|.+.++.++.+|. +|++..+.....+.+++.|+
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence            468999999999999999999999999 67666454444444544444

>PRK07985 oxidoreductase; Provisional

Probab=87.48  E-value=3.7  Score=34.97  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=27.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .++++||.| +|++|.+.++.....|+ +|+.+.+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~   81 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYL   81 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecC
Confidence            568999998 79999998888888999 6777653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=87.47  E-value=1.5  Score=37.69  Aligned_cols=38  Identities=24%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      ..|+++||.| +|.+|...+......|. .|+++.++.++
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   41 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD   41 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            3578999998 79999998888888899 67766555543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=87.46  E-value=0.76  Score=32.80  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH---------HHHHHHc-CCCEEecCCCCcccHHHHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR---------LSIARNL-GADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~---------~~~~~~~-ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      .|++|||.|+|.+|..-++.....|+ .+.++....+.         .++-..+ |++.++.. ++++.+.+.+.+..+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~a-t~d~~~n~~i~~~a~   82 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAA-TDDPELNEAIYADAR   82 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE--SS-HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEec-CCCHHHHHHHHHHHh
Confidence            57899999999999999999999999 77777666310         0111122 45666543 334667777766654

>PRK08278 short chain dehydrogenase; Provisional

Probab=87.43  E-value=4.2  Score=34.08  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+++++|.| +|++|...++.+...|+ .+++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            467899998 79999998888888899 7888876543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=87.43  E-value=1.2  Score=38.63  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|+++.|+|.|.+|...++.++.+|. +|++.+++
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~  177 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTS  177 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCC
Confidence            68999999999999999999999999 89998764

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.32  E-value=2.6  Score=29.20  Aligned_cols=43  Identities=19%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHcC---CCeEE-EEeCChhHHHHH-HHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFG---APRII-ITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G---~~~vi-~~~~~~~~~~~~-~~~ga  224 (249)
                      ++.|+|+|.+|.+.+.-....|   . ++. ++++++++.+.+ +++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~   48 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGV   48 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcc
Confidence            5678899999999999888888   6 566 558899888777 44553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.30  E-value=0.68  Score=35.01  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ++|.|+|.++.+..++++.+|+ .|.+++..++
T Consensus         1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTE-EEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcc
Confidence            4677999999999999999999 7888876655

>TIGR00260 thrC threonine synthase

Probab=87.26  E-value=4.6  Score=35.06  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ...+|.+ +|..|.++...|+..|.+.++.+..   +.+|...++.+|++.+.. ..+.++..+.++++.
T Consensus        71 ~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~-~~~~~~~~~~~~~~~  139 (328)
T TIGR00260        71 NDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAI-DGNFDDAQRLVKQLF  139 (328)
T ss_pred             CCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEe-cCCHHHHHHHHHHHH
Confidence            4455555 7999999999999999977777753   467888899999987653 222334444444443

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.24  E-value=2.1  Score=34.86  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI  218 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~  218 (249)
                      ++++||.| +|++|...+......|+ +++.+ +++.++.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~   45 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQE   45 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            57899998 79999998887777899 67777 777666543

>PRK06608 threonine dehydratase; Provisional

Probab=87.24  E-value=5.6  Score=34.89  Aligned_cols=48  Identities=17%  Similarity=0.231  Sum_probs=39.2

Q ss_pred             EEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          182 VMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       182 vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      -+|. .+|..|++....|+.+|.+.++.+..  +++|.+.++.+|++.+.-
T Consensus        74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~  124 (338)
T PRK06608         74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT  124 (338)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEE
Confidence            3445 47999999999999999977777754  678999999999987654

>PRK06849 hypothetical protein; Provisional

Probab=87.22  E-value=4.8  Score=35.83  Aligned_cols=67  Identities=21%  Similarity=0.163  Sum_probs=42.8

Q ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec---CCCCcccHHHHHHHHHH
Q 025712          178 PETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK---VSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       178 ~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~---~~~~~~~~~~~~~~~~~  246 (249)
                      ..++|||+|+ ...|+..++.++..|. +|+++++++....... ..+++.+.   ...+.+.+.+.+.++.+
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p~~d~~~~~~~L~~i~~   73 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFS-RAVDGFYTIPSPRWDPDAYIQALLSIVQ   73 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHH-HhhhheEEeCCCCCCHHHHHHHHHHHHH
Confidence            4689999985 4689999999999999 8999987764433211 12233221   22334566677666544

>PLN02583 cinnamoyl-CoA reductase

Probab=87.21  E-value=1.9  Score=36.80  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +++++||+| +|.+|...+..+...|+ .|+++.++
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~~R~   39 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGY-TVHAAVQK   39 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence            567899998 79999999999999999 78777664

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.13  E-value=2.2  Score=37.35  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      -..+.+|||+| +|.+|...++.....|. .|++++++.++.
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~   47 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKS   47 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence            35678999998 79999999998888999 788776665543

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=87.11  E-value=5.4  Score=34.62  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=42.4

Q ss_pred             EEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          183 MIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      +|.. +|..|.+....|+.+|.+.++.+..  +++|.+.++.+|++.++--. ..+++.+..+++
T Consensus        70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~-~~~~~~~~a~~~  133 (317)
T TIGR02991        70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR-SQDDAQEEVERL  133 (317)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHH
Confidence            4444 7999999999999999966665543  56789999999998765332 223444444443

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=87.01  E-value=2.3  Score=34.51  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|++|||.|+|.+|..-++.....|+ .|.+++..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            47899999999999999999999999 67776543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.97  E-value=2.9  Score=36.11  Aligned_cols=50  Identities=28%  Similarity=0.404  Sum_probs=39.7

Q ss_pred             cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCC
Q 025712          174 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA  224 (249)
Q Consensus       174 ~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga  224 (249)
                      .+.++..+++|.| +.++|++...-|+..|+ .|-.+.++.+|+..+++ ++.
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l   79 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELEL   79 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhh
Confidence            3456668899986 89999999999999999 57777788888777754 554

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=86.80  E-value=1.6  Score=36.48  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ...|-.+++|.|+|.++....++++.+|+ .|.++|..++
T Consensus        96 ~~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            35677899999999999999999999999 7888875544

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=86.79  E-value=3.2  Score=33.80  Aligned_cols=56  Identities=27%  Similarity=0.436  Sum_probs=38.1

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHH----HcCCC
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIAR----NLGAD  225 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~----~~ga~  225 (249)
                      .+++...+++|++||-+|+|. |+.+.-+++..|.. .|+.++..++-.+.++    ++|.+
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~  123 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID  123 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence            355777899999999998765 77777777777643 5889988876655553    44654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=86.68  E-value=2  Score=37.60  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .|+++.|+|.|.+|....+.++.+|+ +|++.+++...
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 78888876543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=86.61  E-value=2.1  Score=35.41  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      .++++||+| +|.+|...++.+...|. .|+++.++.++..
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~   55 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAK   55 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHH
Confidence            467899998 69999999888888898 6887777766644

>PRK09414 glutamate dehydrogenase; Provisional

Probab=86.50  E-value=3  Score=37.99  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             hhhccccchHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712          156 EEGAMCEPLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT  209 (249)
Q Consensus       156 ~~aa~~~~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~  209 (249)
                      .++.....+.+.-.+++..+. -.|.+|.|.|.|.||+.+++++...|+ +|+++
T Consensus       208 ~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVav  261 (445)
T PRK09414        208 TEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTC  261 (445)
T ss_pred             CCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            334333333333334444333 368999999999999999999999999 78877

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=86.42  E-value=2.4  Score=34.46  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||.| +|++|...+......|+ +|+++.++.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~   39 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASS   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            457899998 79999999999888999 565554443

>PRK08197 threonine synthase; Validated

Probab=86.42  E-value=7.1  Score=34.97  Aligned_cols=65  Identities=15%  Similarity=-0.009  Sum_probs=45.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      |...+|.+ +|..|.+....|+..|.+.+|.+.  .++.|.+.++.+||+.+.. ..+.+++.+.+++.
T Consensus       126 g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v-~~~~~~~~~~a~~~  193 (394)
T PRK08197        126 GVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLV-DGLISDAGKIVAEA  193 (394)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHH
Confidence            33445555 799999999999999997777663  4668899999999986653 22234444444443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.38  E-value=2.4  Score=36.17  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ++|.|+|+|.+|...+..+...|. .|+..+.++++.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~   41 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKN   41 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence            578999999999998888888899 79999999887764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.37  E-value=2.4  Score=35.98  Aligned_cols=43  Identities=23%  Similarity=0.194  Sum_probs=35.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|.|+|.|.+|.......+..|. .|.+.++++++.+.+.+.|+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~   44 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL   44 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence            57889999999887777777888 79999999988888777664

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=86.34  E-value=2.4  Score=35.18  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +++++||.| +|++|...++.....|+ .++.+.+
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~   39 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYR   39 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            578999998 79999999999889999 5666544

>PRK09135 pteridine reductase; Provisional

Probab=86.29  E-value=2.8  Score=34.18  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||.| +|.+|...+......|+ .+++++++
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            457899998 79999998888888899 78887764

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=86.26  E-value=2.5  Score=36.39  Aligned_cols=40  Identities=30%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~  219 (249)
                      +++++|.| ++++|.+.++.....| + +|+.+.+++++.+.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~   44 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQA   44 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHH
Confidence            57899998 6899999888777889 7 788887777765544

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PLN02778 3,5-epimerase/4-reductase

Probab=86.18  E-value=3.3  Score=35.48  Aligned_cols=54  Identities=11%  Similarity=0.073  Sum_probs=37.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH----HHHHHcCCCEEecCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL----SIARNLGADETAKVST  232 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~----~~~~~~ga~~vi~~~~  232 (249)
                      ...++||+| +|-+|...++.+...|. .|+.........    ..+++.+.+.||+.-.
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEECCc
Confidence            457899998 79999999999999998 565443322222    2334567899886554

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=86.09  E-value=5.5  Score=35.78  Aligned_cols=63  Identities=19%  Similarity=0.181  Sum_probs=44.3

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .+|.+ +|..|++....|+.+|++.+|.+..  ++.|.+.++.+|++.++. ..+..+..+..+++.
T Consensus       115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~-~~~~~~a~~~a~~~a  180 (396)
T TIGR03528       115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTIT-DLNYDDAVRLAWKMA  180 (396)
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            45555 7999999999999999977777743  557899999999976553 332234444444443

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK06382 threonine dehydratase; Provisional

Probab=86.07  E-value=7.5  Score=35.01  Aligned_cols=48  Identities=19%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      |+..++|..|++....|+.+|.+.+|.+..  +..|.+.++.+||+.++.
T Consensus        76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~  125 (406)
T PRK06382         76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILT  125 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEE
Confidence            433458999999999999999987777754  358899999999987654

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=86.07  E-value=1.6  Score=37.35  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=28.9

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      +++|.| +|.+|...++.....|. .|++++++.++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~   37 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPTSDR   37 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEecCccc
Confidence            689998 69999999998888898 788887765543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07591 threonine synthase; Validated

Probab=86.05  E-value=7.1  Score=35.38  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ..+|.+ +|..|.++...|+.+|.+.+|.+..  +..|+..++.+||+.++. ..+.+++.+.++++.+
T Consensus       138 ~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v-~g~~d~a~~~a~~~~~  205 (421)
T PRK07591        138 TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAV-DGNYDDVNRLCSELAN  205 (421)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHHH
Confidence            344555 7999999999999999977777743  468899999999987653 2223455555555443

>PRK12746 short chain dehydrogenase; Provisional

Probab=86.03  E-value=2.3  Score=34.96  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~~~~  216 (249)
                      .+++++|.| +|++|...++.....|+ ++++ ..++.++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            367899998 79999999988888899 5655 35555544

>PRK06701 short chain dehydrogenase; Provisional

Probab=86.02  E-value=6.5  Score=33.40  Aligned_cols=37  Identities=24%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .-+++++||.| +|++|...+......|+ +|+.+.++.
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            34578999998 69999998888888899 677776653

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=85.96  E-value=1.6  Score=38.16  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      |+++-|+|.|.+|....+.++.+|+ +|++.+.
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            8899999999999999999999999 8999987

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=85.92  E-value=4.9  Score=32.87  Aligned_cols=36  Identities=33%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRL  216 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~  216 (249)
                      +++||.| +|++|...++.....|+ .++.+ .++.++.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~   40 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAA   40 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHH
Confidence            5789998 79999998888888899 55554 4454443

>PRK12937 short chain dehydrogenase; Provisional

Probab=85.91  E-value=2.4  Score=34.53  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=27.4

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .++++++|+| +|++|...++.....|+ +++.+.+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~   37 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYA   37 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence            3578999998 79999999999888999 5655544

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=85.89  E-value=2.8  Score=32.31  Aligned_cols=41  Identities=12%  Similarity=0.223  Sum_probs=36.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +|.|+|+|..|.+....+...|. .|....++++..+.+++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~   41 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINET   41 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence            57899999999999999999997 899999998888888763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=85.85  E-value=2.1  Score=31.97  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..+|+|.|+|++|...+...-..|...+..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999998888899888888753

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02415 23BDH acetoin reductases

Probab=85.81  E-value=2.8  Score=34.42  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      ++++|.| +|++|...++.+...|+ +++.+.++.++.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~   37 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETA   37 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            4688998 79999998888888999 788887776554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06487 glycerate dehydrogenase; Provisional

Probab=85.75  E-value=1.6  Score=37.95  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP  180 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            57899999999999999999999999 78888754

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=85.67  E-value=2.9  Score=37.54  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             ECCCCCChhhhccccchHHHHHHHHHcCCC-CCCeEEEEcCChHHHHHHHHHHHcCCC--eEEEEeCC
Q 025712          148 KLPDNVSLEEGAMCEPLSVGVHACRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAP--RIIITDVD  212 (249)
Q Consensus       148 ~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~--~vi~~~~~  212 (249)
                      .+|---+..++.++..++.-.++++..+-+ ...+|++.|+|+-|.+.+.+.+..|++  +++.+|+.
T Consensus       167 ~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         167 NIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             CCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            455455667777666677777777664433 567777789999999999999999997  78888753

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=85.56  E-value=3.3  Score=37.31  Aligned_cols=48  Identities=25%  Similarity=0.442  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga  224 (249)
                      -.++++||+|+|-.|..++.-....|...+.+..++.+|... ++++|+
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~  224 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA  224 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            378999999999999999999999998788888888888664 466883

>PRK13984 putative oxidoreductase; Provisional

Probab=85.54  E-value=3.2  Score=39.38  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=40.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---------------------hHHHHHHHcCCCEEec
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAK  229 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---------------------~~~~~~~~~ga~~vi~  229 (249)
                      .+.+++++|.|+|..|+.++..++..|. .|.+++..+                     ...+.++++|++..++
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~  353 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN  353 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence            4678999999999999999999999999 566665432                     2356677788766554

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=85.52  E-value=1.9  Score=35.52  Aligned_cols=46  Identities=28%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +..+-+.|.|.|+|..|.-..|++...|. .|..++.++..++.+++
T Consensus         7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~   52 (298)
T KOG2304|consen    7 NMAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATK   52 (298)
T ss_pred             ccccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHH
Confidence            44556788899999999999999999999 89999999988777643

>PRK05650 short chain dehydrogenase; Provisional

Probab=85.50  E-value=2.8  Score=34.99  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      ++++|.| +|++|...+......|+ .|+.++++.++.+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~   38 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGE   38 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            3688997 79999998888888899 7888887776644

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.42  E-value=2.7  Score=35.85  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++|.|+|+|.+|....+.+...|. .|++.+.++++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence            468899999999888888888898 7889999988877653

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.37  E-value=7.5  Score=33.29  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+++++|+| ++++|.+.++.....|+ +|+.++..
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            578899998 68999998888888899 67777653

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=85.37  E-value=2.1  Score=37.39  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .++++||.| +|.+|.+.++.....|. .|++++++...
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc
Confidence            478999998 79999999999999998 78888765543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12483 threonine dehydratase; Reviewed

Probab=85.31  E-value=5  Score=37.45  Aligned_cols=62  Identities=15%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|. .+|.-|++....|+.+|...+|.+..  +..|.+.++.+||+.++. .....+..+..+++.
T Consensus        88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~-g~~~d~a~~~A~~la  152 (521)
T PRK12483         88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLH-GESFPDALAHALKLA  152 (521)
T ss_pred             EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHHH
Confidence            454 58999999999999999977777743  567899999999976653 322234444444443

>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]

Probab=85.26  E-value=2  Score=36.45  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe-cCC--CCcccHHHHHHHHH
Q 025712          172 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA-KVS--TDIEMWGRYKMQWV  245 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi-~~~--~~~~~~~~~~~~~~  245 (249)
                      +...+.+|-+| +-| +|+.|.....+|++.|++..|.+.  .+.+|.+.++.|||+.-- ..-  .++..+..+.++.+
T Consensus        93 e~GkL~~gg~v-~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~a  171 (391)
T KOG1481|consen   93 EKGKLVRGGTV-VEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAA  171 (391)
T ss_pred             HcCCcccCceE-EecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHh
Confidence            44677888443 457 799999999999999997777774  356889999999985321 111  12346666666654


Q ss_pred             H
Q 025712          246 Q  246 (249)
Q Consensus       246 ~  246 (249)
                      .
T Consensus       172 n  172 (391)
T KOG1481|consen  172 N  172 (391)
T ss_pred             h
Confidence            4

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=85.25  E-value=6.3  Score=33.93  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=39.2

Q ss_pred             CCCeEEEE-c--CChHHHHHHHHHHHcCCCeEEEEeCCh----------hHHHHHHHcCCCEEec
Q 025712          178 PETNVMIM-G--SGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLGADETAK  229 (249)
Q Consensus       178 ~g~~vlI~-G--~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~~ga~~vi~  229 (249)
                      .|.+.+|. |  +|..|++....|+..|.+.++.+....          .|..+++.+|++.+..
T Consensus        50 ~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~  114 (307)
T cd06449          50 KGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLV  114 (307)
T ss_pred             cCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEE
Confidence            34455555 3  578999999999999997777776442          4788999999986654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.25  E-value=6.9  Score=32.51  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+++++|.| +  +++|.+.++.....|+ +|+.+.++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence            478999998 4  6999998888888999 67777543

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=85.25  E-value=2.6  Score=40.58  Aligned_cols=41  Identities=22%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999998888888899 788888887765544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=85.25  E-value=5.4  Score=34.40  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~  219 (249)
                      +........+++|+|+|..|.+.++.... .+.+.+.+.+++.++.+.+
T Consensus       118 ~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~  166 (304)
T PRK07340        118 RTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF  166 (304)
T ss_pred             HHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            44444567899999999999998888764 7887899999988876654

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.24  E-value=8.3  Score=32.07  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEe
Q 025712          178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      .++++||.|+   +++|.+..+.....|+ +++.+.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~   39 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTY   39 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEc
Confidence            4789999983   5899998888888999 677664

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.21  E-value=3  Score=35.52  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++|.|+|+|.+|....+.+...|. .|...+.++++.+.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence            578999999999888888888898 7999998887665543

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=85.16  E-value=5.9  Score=32.92  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=25.7

Q ss_pred             CCCeEEEEcC---ChHHHHHHHHHHHcCCCeEEEEe
Q 025712          178 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G~---g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      .+++++|.|+   +++|.+.+......|+ +|+.+.
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~   39 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITY   39 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence            4789999984   5999998888888999 666653

>PRK06932 glycerate dehydrogenase; Provisional

Probab=85.14  E-value=1.7  Score=37.65  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|+++.|+|.|.+|....+.++.+|+ +|++.+..
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~  179 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK  179 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC
Confidence            47899999999999999999999999 78888654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.11  E-value=3.7  Score=31.79  Aligned_cols=45  Identities=16%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .+|-++|.|..|.....-....|+ .+.+.++++++.+.+.+.|+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~   46 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE   46 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh
Confidence            367888999999998888888999 899999999999988877743

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=85.04  E-value=2.7  Score=40.32  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +.+++|+|+|+|..|+.+...+...|. .|.+++.+
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~  225 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN  225 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            457899999999999999999999999 57777654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.99  E-value=2.8  Score=28.11  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +++|+|+|.+|.-.....+.+|. .+..+..+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~   31 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERS   31 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEecc
Confidence            57899999999999999999998 66666554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=84.96  E-value=6.5  Score=34.05  Aligned_cols=49  Identities=10%  Similarity=0.129  Sum_probs=36.8

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHH-HcCCCeEEEEeCChhHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +.......++++|+|+|..|.+.+.... ..+..++.+..++.++.+.+.
T Consensus       118 ~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        118 SYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             HHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            3344467889999999999999876444 477778999999888866553

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.96  E-value=2.1  Score=34.54  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+.+|+|.|.|++|..+++.+...|..++..+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46889999999999999999999999888888765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=84.96  E-value=3.3  Score=28.31  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      -.+++++|.|.|.+|..+.+.+...+..++...++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45789999999999999999999986657777754

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=84.94  E-value=2.6  Score=35.94  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=33.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|+|+|+|.+|.+....+...|. .|..+++ +++.+.+++.|.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~   43 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGL   43 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCe
Confidence            58899999999987777777788 6777777 777787777664

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.94  E-value=3.2  Score=37.89  Aligned_cols=48  Identities=17%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh-----HHHHHHHcCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-----RLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~-----~~~~~~~~ga~~  226 (249)
                      .+++|+|+|.|..|.++.++++..|+ .|.+.|.++.     ..+.+++.|+..
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~~   65 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGVKL   65 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCCEE
Confidence            36899999999999999999999999 7888886542     123455556533

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=84.89  E-value=2.8  Score=36.39  Aligned_cols=47  Identities=23%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+++|.|+|.|..|.+.++-++..|.+.++....+.++.+.+.+.|+
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv   48 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGF   48 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCC
Confidence            47889999999999999999999998433345544455565556555

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.85  E-value=2  Score=39.33  Aligned_cols=36  Identities=14%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -..+++|+|+|.|..|.+++++++. |+ .+++.|...
T Consensus         3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~~   38 (454)
T PRK01368          3 SHTKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDLK   38 (454)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCCC
Confidence            3568899999999999999999994 99 788888543

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=84.84  E-value=7.3  Score=35.03  Aligned_cols=47  Identities=23%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             EEEc-CChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          183 MIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       183 lI~G-~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +|.+ +|..|++....|+..|.+.+|.+.  .++.|.+.++.+|++.+.-
T Consensus       119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v  168 (399)
T PRK08206        119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIIT  168 (399)
T ss_pred             EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            3444 799999999999999997777774  3568899999999986553

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.81  E-value=3.2  Score=33.70  Aligned_cols=35  Identities=17%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~  213 (249)
                      +.+++||.| +|.+|...+..+...|+ .+++ +.++.
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~   41 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDE   41 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCH
Confidence            357899998 79999999998888999 4555 44333

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=84.78  E-value=4.8  Score=34.28  Aligned_cols=54  Identities=24%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ..+.|+...+|..|.++...|+.+|.+.++.+..  ++.+...++.+|++.+....
T Consensus        55 ~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  110 (306)
T PF00291_consen   55 GGRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG  110 (306)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS
T ss_pred             ccceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc
Confidence            4455633348999999999999999966666644  35788889999997764433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>PRK08328 hypothetical protein; Provisional

Probab=84.74  E-value=2.1  Score=35.39  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+.+|+|.|+|++|..++...-..|..++..+|..
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999888888743

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=84.72  E-value=2.5  Score=36.30  Aligned_cols=40  Identities=25%  Similarity=0.440  Sum_probs=32.3

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      |||+| +|++|...++-....+...++.++.++.++-.+++
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~   41 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELER   41 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHH
Confidence            68997 79999988888888888799999999988877753

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.69  E-value=2.2  Score=35.55  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +.+|+|.|+|++|..+++.....|..++..+|..
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4789999999999999999999999888888653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=84.67  E-value=3.2  Score=38.25  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+|+|++|.+++......|+ .++..+++.++.+.+
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  371 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEAL  371 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57889999999999999999999999 788888887776554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=84.67  E-value=4  Score=33.69  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      -.+.+++|.|.|.||+.+++++...|+ +++++.
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~   61 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVS   61 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            357999999999999999999999999 777553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12747 short chain dehydrogenase; Provisional

Probab=84.66  E-value=3.1  Score=34.28  Aligned_cols=37  Identities=19%  Similarity=0.123  Sum_probs=28.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~  215 (249)
                      .+++++|+| +|++|.+.++.....|+ +++.+. +..++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~   41 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEE   41 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHH
Confidence            478999998 79999999998888999 566653 44443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		9e-61
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		5e-60
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-58
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		9e-58
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		2e-37
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		1e-29
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		3e-29
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		3e-29
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		3e-29
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		3e-29
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		5e-29
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		6e-28
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		1e-22
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-22
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		2e-22
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-21
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		3e-21
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		3e-20
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		5e-20
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		6e-20
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-19
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		5e-19
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		4e-18
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		7e-18
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		2e-17
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-17
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		7e-17
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		8e-17
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-16
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		3e-16
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-15
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		2e-15
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		5e-15
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		6e-15
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		9e-15
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-14
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-14
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		1e-14
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		3e-14
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		4e-14
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		1e-13
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-13
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-13
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		4e-13
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		6e-13
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		7e-13
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		9e-13
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		1e-12
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		1e-12
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-12
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		1e-12
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-12
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-12
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-12
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		2e-12
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		3e-12
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		3e-12
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-12
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		3e-12
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-12
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		4e-12
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-12
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		6e-12
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		7e-12
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		8e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		9e-12
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		9e-12
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		1e-11
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		1e-11
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-11
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		1e-11
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		2e-11
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		2e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-11
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		5e-11
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		7e-11
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		3e-10
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		6e-10
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		1e-09
1ps0_A	360	Crystal Structure Of The Nadp(H)-Dependent Cinnamyl		4e-09
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		2e-08
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		5e-08
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		8e-08
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		3e-07
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		1e-06
2cf5_A	357	Crystal Structures Of The Arabidopsis Cinnamyl Alco		3e-06
3krt_A	456	Crystal Structure Of Putative Crotonyl Coa Reductas		6e-06
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		1e-05
2cdb_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 In		1e-05
3goh_A	315	Crystal Structure Of Alcohol Dehydrogenase Superfam		2e-05
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		2e-04

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score =  229 bits (585), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 111/215 (51%), Positives = 153/215 (71%), Gaps = 1/215 (0%)
Query: 13  NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           + N++A L     L+++   +P     +V +++  +GICGSDVH+++  R A+FIVK PM
Sbjct: 3   SDNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPM 62
Query: 73  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
           VIGHE +G + +VG  VK L+ GDRVA+EPG+ C  C  CK G YNLCP++ F  +PP +
Sbjct: 63  VIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD 122
Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
           G+LA   VH A  C+KLPDNVSLEEGA+ EPLSVGVHACRRA V   T V+++G+GPIGL
Sbjct: 123 GNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGL 182
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           V++LAA+A+GA  ++ T    +RL +A+N GAD T
Sbjct: 183 VSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVT 216

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 153/222 (68%)
Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 5   KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 64
Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 65  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 124
Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 184
Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 185 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 150/222 (67%)
Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R  ++GICGSDVH+++  R  NFIVKKP
Sbjct: 5   KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKP 64
Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
            V+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 65  XVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPPD 124
Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 184
Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
            VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 185 XVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score =  219 bits (559), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 152/220 (69%)
Query: 14  QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMV 73
           +N++  + G   L+++ Y +P  GP +V +++ ++GICGSDVH+++  R  +F+VKKPMV
Sbjct: 6   ENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMV 65
Query: 74  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 133
           +GHE +G + +VGS V+ L+ GDRVA++PG        CK G YNL P + F  +PP +G
Sbjct: 66  LGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDG 125
Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
           +L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRRA V     V++ G+GPIGLV
Sbjct: 126 NLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLV 185
Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
            LLAA+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 186 NLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEISNE 225

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 119/202 (58%), Gaps = 13/202 (6%)
Query: 40  DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99
           +V V +++ GICGSDVH +K       IV+   V+GHE AG +  V   VKS++VGDRVA
Sbjct: 42  EVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVA 101
Query: 100 LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA 159
           +EP + C  C  C  G YN C  + F  +PP  G L   V HPA  C+K+  N+S E GA
Sbjct: 102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGA 160
Query: 160 MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 219
           M EPLSV +   +RA V     V+I G+GPIGL+T+L A+A GA  ++ITD+D  RL  A
Sbjct: 161 MLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA 220
Query: 220 RN------------LGADETAK 229
           +             L A+E+AK
Sbjct: 221 KEICPEVVTHKVERLSAEESAK 242

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 1/188 (0%)
Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP ++ VR++A  ICG+D+H +K    A   ++ P+V GHE +G++E VG  V+  
Sbjct: 20  VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRP 79
Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           +VGD V+LE  I C  C  C+ G+Y++C   +  G    +G  A  VV PA+  +  P +
Sbjct: 80  QVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGV-DRDGGFAEYVVVPAENAWVNPKD 138
Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           +  E  A+ EP    VH     +     +V+I G+GPIGL+  +  RA GA  I+++D +
Sbjct: 139 LPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPN 198
Query: 213 VQRLSIAR 220
             RL+ AR
Sbjct: 199 PYRLAFAR 206

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 2/193 (1%)
Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V +++ A  ICG+D+H ++    A   +K P ++GHE AG + EVG  V+ L
Sbjct: 24  VPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDL 83
Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           +VGD +++E  I CG C  CK   Y++C   + FG    +G  AH  + PAK  +K P +
Sbjct: 84  QVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGV-DMDGVFAHYAIVPAKNAWKNPKD 142
Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           +  E  A+ EPL   V       +   +  +I G+GP+GL+ +  A+A GA  +I+++  
Sbjct: 143 MPPEYAALQEPLGNAVDTVLAGPIAGRST-LITGAGPLGLLGIAVAKASGAYPVIVSEPS 201
Query: 213 VQRLSIARNLGAD 225
             R  +A+ +GAD
Sbjct: 202 EFRRKLAKKVGAD 214

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 5/220 (2%)
Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           ++   A  L  +  + ++   +P  GP D+ V+++A GICG+D H         F    P
Sbjct: 21  QSXXKAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH----GEFPSTPP 76
Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           + +GHE  GI+ E GS V+ +  G R+  +P ISCG C  C+AG  NLC  +R  G    
Sbjct: 77  VTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGI-HR 135
Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G  A  V+ P K  +++P  +    GA CEPL+  +H    + +   + V I+G G IG
Sbjct: 136 DGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIG 195
Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
           L+T+  AR  GA  +I++     +  +A  +GA  T   S
Sbjct: 196 LLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPS 235

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 2/193 (1%)
Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V +++ A  ICG+D+H ++    A   +K P + GHE AG + E+G  V+ +
Sbjct: 23  VPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGI 82
Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           EVGD V++E  I CG C  C+ G Y++C   + FG   T+G  A   V PA+  +K P +
Sbjct: 83  EVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKS 141
Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           +  E   + EPL   V       +  ++ V+I G+GP+GL+ +  A+A GA  +I+++  
Sbjct: 142 IPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGAYPVIVSEPS 200
Query: 213 VQRLSIARNLGAD 225
             R  +A+ +GAD
Sbjct: 201 DFRRELAKKVGAD 213

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 2/193 (1%)
Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P  GP +V +++ A  ICG+D+H ++    A   +K P + GHE AG + E+G  V+ +
Sbjct: 24  VPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGI 83
Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
           EVGD V++E  I CG C  C+ G Y++C   + FG   T+G  A   V PA+  +K P +
Sbjct: 84  EVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKS 142
Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           +  E   + EPL   V       +  ++ V+I G+GP+GL+ +  A+A GA  +I+++  
Sbjct: 143 IPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGAYPVIVSEPS 201
Query: 213 VQRLSIARNLGAD 225
             R  +A+ +GAD
Sbjct: 202 DFRRELAKKVGAD 214

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           L I    +PT    +V+V++K  GICGSD H +   R  N   K P VIGHE  G+I+ V
Sbjct: 32  LSIIEREIPTPSAGEVRVKVKLAGICGSDSHIY---RGHNPFAKYPRVIGHEFFGVIDAV 88
Query: 86  GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL 145
           G  V+S  VG+RVA++P +SCGHC  C  G  N+C  +   G    +G  +   V PAK 
Sbjct: 89  GEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLGV-HADGGFSEYAVVPAKN 147
Query: 146 CYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA-FGAP 204
            +K+P+ V+ +   M EP ++  +            V++ G+GPIGL  +   +  +   
Sbjct: 148 AWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVK 207
Query: 205 RIIITDVDVQRLSIARNLGAD 225
            +I+ D   +RL  A+  GAD
Sbjct: 208 NVIVADRIDERLEKAKESGAD 228

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 112/201 (55%), Gaps = 8/201 (3%)
Query: 33  LPTLGPQD-VKVRIKALGICGSDVHH-FKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90
           +P +  QD V+V+I + G+CGSD+   FK     N     P+ +GHE +G I+ VGS V 
Sbjct: 19  IPEIKHQDEVRVKIASSGLCGSDLPRIFK-----NGAHYYPITLGHEFSGYIDAVGSGVD 73
Query: 91  SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
            L  GD VA  P + C  C  C  G Y+ C +  F GS   +G  A  +V   K  + LP
Sbjct: 74  DLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSR-RDGGFAEYIVVKRKNVFALP 132
Query: 151 DNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 210
            ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +  A A GA  +   D
Sbjct: 133 TDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192
Query: 211 VDVQRLSIARNLGADETAKVS 231
           +  ++L++A++ GA +T   S
Sbjct: 193 ISSEKLALAKSFGAMQTFNSS 213

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIE 83
           LKI+    PT+   +V VRIKA G+C +D+H        ++ VK   P++ GHE  GI+E
Sbjct: 13  LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH----GDWPVKPKLPLIPGHEGVGIVE 68
Query: 84  EVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           EVG  V  L+VGDRV + P +  +CGHC  C +G   LC   +  G    +G  A     
Sbjct: 69  EVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRA 126
Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR 199
            A    K+PDN+S EE A   C  ++    A +     P   V I G G +G V +  A+
Sbjct: 127 AADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK 185
Query: 200 AFGAPRIIITDVDVQRLSIARNLGAD 225
           A G   ++  D+  ++L +A+ LGAD
Sbjct: 186 AMGL-NVVAVDIGDEKLELAKELGAD 210

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 14/206 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIE 83
           LKI+    PT+   +V VRIKA G+C +D+H        ++ VK   P++ GHE  GI+E
Sbjct: 13  LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH----GDWPVKPKLPLIPGHEGVGIVE 68
Query: 84  EVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           EVG  V  L+VGDRV + P +  +CGHC  C +G   LC   +  G    +G  A     
Sbjct: 69  EVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRA 126
Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR 199
            A    K+PDN+S EE A   C  ++    A +     P   V I G G  G V +  A+
Sbjct: 127 AADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAIYGIGGFGHVAVQYAK 185
Query: 200 AFGAPRIIITDVDVQRLSIARNLGAD 225
           A G   ++  D+  ++L +A+ LGAD
Sbjct: 186 AMGL-NVVAVDIGDEKLELAKELGAD 210

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKK----PMVIGHECAGIIEEVGSEV---- 89
           P ++ +++KA GICGSDVH  +T      +       P+ +GHE +G++ E G E     
Sbjct: 55  PTEIIIKVKACGICGSDVHXAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRR 114
Query: 90  --KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCY 147
             K  E+G+ V  E  + CGHC  C  G  N C  +   G    +G+ A  V   AK  +
Sbjct: 115 TNKRFEIGEPVCAEEXLWCGHCRPCAEGFPNHCENLNELGFN-VDGAFAEYVKVDAKYAW 173
Query: 148 KLPDNVSLEEG-------AMCEPLSVGVHAC--RRANVGPETNVMIMGSGPIGLVTLLAA 198
            L +   + EG       ++ EP SV  +A   R   + P  NV+I+G GPIGL  +   
Sbjct: 174 SLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAIL 233
Query: 199 RAFGAPRIIITDVDVQRLSIARNLGAD 225
           +  GA ++I+++    R ++A+ LGAD
Sbjct: 234 KHAGASKVILSEPSEVRRNLAKELGAD 260

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 7/213 (3%)
Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G + L++    +P  GP++V+VR+KA  +   DV   K +      +  P V+G + +G+
Sbjct: 11  GPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPL--PHVLGADGSGV 68
Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           ++ VG  V+    GD V + PG+SCG C  C AG  NLCP  +  G    +G+ A  VV 
Sbjct: 69  VDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGE-HRHGTYAEYVVL 127
Query: 142 PAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMGSGP-IGLVTLLAA 198
           P       P N+S EE A      L+       +  V P  +V++M +G  + +  +  A
Sbjct: 128 PEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIA 187
Query: 199 RAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
           + FGA R+I T     +L  A+ LGADET   +
Sbjct: 188 KLFGA-RVIATAGSEDKLRRAKALGADETVNYT 219

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH----HFKTMRCA-NFIVKKPMVIGHEC 78
           K LK++   +P      V ++I+A G+C SDVH     F  +R   +  VK P+ +GHE 
Sbjct: 11  KPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEI 70
Query: 79  AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A  
Sbjct: 71  AGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGI-NYDGAYAEY 129
Query: 139 VVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLL 196
           V+ P  K  YKL    ++E   +         A R+A++ P   ++++G+ G +G + + 
Sbjct: 130 VLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQ 189
Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232
            A+A     II  DV  + L  A+  GAD     S+
Sbjct: 190 IAKAVSGATIIGVDVREEALEAAKRAGADYVINASS 225

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 8/217 (3%)
Query: 24  KTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGII 82
           K L+I+    P L G  DV VRI   G+C +D+H  + M       K P  +GHE  G I
Sbjct: 26  KPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYI 85
Query: 83  EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
           EEV   V+ LE GD V L P ++ G C  C+AG    C  + F G    +G  A  +   
Sbjct: 86  EEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTS 144
Query: 143 AKLCYKLPDNVSLEEGAMCEPLS-VGVHACRRA-----NVGPETNVMIMGSGPIGLVTLL 196
            +   KLP ++S E+     PL+  G+ A R        + P   V I+G G +G + + 
Sbjct: 145 HRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQ 204
Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             +      +I  DV  ++L +A  LGAD       D
Sbjct: 205 LLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRD 241

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 104/215 (48%), Gaps = 14/215 (6%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGI 81
           K L I    +P  GP  ++V I+A G+C +D+H  +     ++ VK   P + GHE  G 
Sbjct: 36  KPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAE----GDWPVKPNPPFIPGHEGVGF 91
Query: 82  IEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKV 139
           +  VGS VK ++ GDRV + P +  +CGHC  C  G   LC E    G    NG  A  V
Sbjct: 92  VSAVGSGVKHVKEGDRVGI-PWLYTACGHCRHCLGGWETLCEEQLNTGY-SVNGGFAEYV 149
Query: 140 VHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
           V        LP N+   E A  +C  ++V     +  +  P   V+I G G +G + +  
Sbjct: 150 VADPNFVGHLPKNIDFNEIAPVLCAGVTV-YKGLKVTDTKPGDWVVISGIGGLGHMAVQY 208
Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232
           ARA G   +   D+D ++L +AR LGA  T    T
Sbjct: 209 ARAMGL-NVAAVDIDDRKLDLARRLGATVTVNAKT 242

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 8/203 (3%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           PT GP ++ +++ A G+C SD+     M  A +    P+ +GHE  G + E+G  V    
Sbjct: 21  PTPGPGEILLKVTAAGLCHSDIF-VMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFG 79
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG-SPP---TNGSLA-HKVVHPAKLCYK 148
           VGD VA+     CG C  C  G  N C      G +PP   + GS+A + +V  A+    
Sbjct: 80  VGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVP 139
Query: 149 LPDNVSLEEGAMCEPLSVGVHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRI 206
           + D   +    + +      HA  R    +GP +  +++G G +G V +   RA  A R+
Sbjct: 140 IGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARV 199
Query: 207 IITDVDVQRLSIARNLGADETAK 229
           I  D+D  RL++AR +GAD   K
Sbjct: 200 IAVDLDDDRLALAREVGADAAVK 222

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 32  HLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91
            L  + P +  + ++  G+C +D+H    +   +F  K   V+GHE  GI++E+G++V S
Sbjct: 20  ELRAIKPNEALLDMEYCGVCHTDLH----VAAGDFGNKAGTVLGHEGIGIVKEIGADVSS 75
Query: 92  LEVGDRVALEPGIS-CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
           L+VGDRV++      CGHC  C +G+   C E++  G    +G +A + +  A    K+P
Sbjct: 76  LQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVP 134
Query: 151 DNVSLEEGAMCEPLSVGVH-ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209
           D +   E +      V  + A + + V P    +I G+G +G + +  A+     ++I  
Sbjct: 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAV 194
Query: 210 DVDVQRLSIARNLGADET 227
           D++  +L++A+ +GAD T
Sbjct: 195 DINQDKLNLAKKIGADVT 212

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 104/196 (53%), Gaps = 7/196 (3%)
Query: 32  HLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS 91
            L  + P +  + ++  G+C +D+H    +   ++  K   V+GHE  GI++E+G++V S
Sbjct: 20  ELRAIKPNEALLDMEYCGVCHTDLH----VAAGDYGNKAGTVLGHEGIGIVKEIGADVSS 75
Query: 92  LEVGDRVALEPGIS-CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
           L+VGDRV++      CGHC  C +G+   C E++  G    +G +A + +  A    K+P
Sbjct: 76  LQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVP 134
Query: 151 DNVSLEEGAMCEPLSVGVH-ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209
           D +   E +      V  + A + + V P    +I G+G +G + +  A+     ++I  
Sbjct: 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAV 194
Query: 210 DVDVQRLSIARNLGAD 225
           D++  +L++A+ +GAD
Sbjct: 195 DINQDKLNLAKKIGAD 210

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIE 83
           L I    +P  GP  V+V+I+A G+C +D+H        ++ VK   P + GHE  G + 
Sbjct: 15  LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD----GDWPVKPTLPFIPGHEGVGYVS 70
Query: 84  EVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
            VGS V  ++ GDRV + P +  +CG+C  C  G   LC + +  G    NG     VV 
Sbjct: 71  AVGSGVSRVKEGDRVGV-PWLYSACGYCEHCLQGWETLCEKQQNTGY-SVNGGYGEYVVA 128
Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR 199
                  LPD V   E A  +C  ++V     +  +  P   V+I G G +G V +  AR
Sbjct: 129 DPNYVGLLPDKVGFVEIAPILCAGVTV-YKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR 187
Query: 200 AFGAPRIIITDVDVQRLSIARNLGADETAKV-STDIEMW 237
           A G  R+   D+D  +L++AR LGA+       TD   W
Sbjct: 188 AMGL-RVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW 225

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L  + + +  +    + V I + G+CGSDVH F   R  +  V  P+++GHE AG + 
Sbjct: 28  QPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMF---RGEDPRVPLPIILGHEGAGRVV 84
Query: 84  EVGSEVKSL-----EVGDRVALEPGISCGHCSLCKAGSY-NLCPEMRFFG-------SPP 130
           EV  E + L     + GD +    GI+CG C  CK      LCP  + +G        P 
Sbjct: 85  EVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPH 144
Query: 131 TNGSLA-HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPET----NVMIM 185
             G  + H V+ P     K+ +   L+  AM   +  G  A    +  PE+     V+I 
Sbjct: 145 LRGCYSSHIVLDPETDVLKVSEKDDLDVLAMA--MCSGATAYHAFDEYPESFAGKTVVIQ 202
Query: 186 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           G+GP+GL  ++ AR+ GA  +I+      RL +A  +GAD T
Sbjct: 203 GAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT 244

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--VIGHECAGIIE 83
           L+I+   +P  GP  V V+I+A G+C +D+H  +     ++ VK P+  + GHE  G + 
Sbjct: 19  LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAE----GDWPVKPPLPFIPGHEGVGYVA 74
Query: 84  EVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
            VGS V  ++ GDRV + P +  +CG C  C  G   LC   +  G    NG  A  V+ 
Sbjct: 75  AVGSGVTRVKEGDRVGI-PWLYTACGCCEHCLTGWETLCESQQNTGY-SVNGGYAEYVLA 132
Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR 199
                  LP NV   E A  +C  ++V     ++ N  P   V I G G +G V +  AR
Sbjct: 133 DPNYVGILPKNVEFAEIAPILCAGVTV-YKGLKQTNARPGQWVAISGIGGLGHVAVQYAR 191
Query: 200 AFGAPRIIITDVDVQRLSIARNLGADET 227
           A G   +   D+D  +L +AR LGA  T
Sbjct: 192 AMGL-HVAAIDIDDAKLELARKLGASLT 218

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 40  DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA 99
           +V V++ A G+C +D+     +R   + V  P V+GHE +GIIE +G  V  L+VGD V 
Sbjct: 33  EVLVKVVATGMCHTDL----IVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVV 88
Query: 100 LEPGISCGHCSLCKAGSYNLCPEM--RFFGSPPTNGSLA-----------HKVVHPAKLC 146
           L  G  CG C+ C  G+   C E   R F    + G+ A           H     +   
Sbjct: 89  LSYGY-CGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFAT 147
Query: 147 Y---------KLPDNVSLEEGAMCEPLSVGVH----ACRRA-NVGPETNVMIMGSGPIGL 192
           Y         K+  +V +E   +  PL  G+     AC  A  V P ++ +  G+G +GL
Sbjct: 148 YALSRENNTVKVTKDVPIE---LLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGL 204
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224
             LLAA+  GA  II  D+   RL +A+ LGA
Sbjct: 205 SALLAAKVCGASIIIAVDIVESRLELAKQLGA 236

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 24  KTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVH----HFKTMRCANFI-VKKPMVIGHE 77
           K L +Q   +P   GPQ V ++++A G+C SDVH     F  +R    + VK P+ +GHE
Sbjct: 11  KPLSLQEIGVPKPKGPQ-VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
            AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A 
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAE 128
Query: 138 KVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP-ETNVMIMGSGPIGLVTL 195
            V+ P  K  YKL    ++E   +         A R+A++ P +T +++   G +G + +
Sbjct: 129 YVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAV 188
Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
             A+A     II  DV  + +  A+  GAD     S
Sbjct: 189 QIAKAVSGATIIGVDVREEAVEAAKRAGADYVINAS 224

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 24  KTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVH----HFKTMRCANFI-VKKPMVIGHE 77
           K L +Q   +P   GPQ V ++++A G+C SDVH     F  +R    + VK P+ +GHE
Sbjct: 11  KPLSLQEIGVPKPKGPQ-VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
            AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A 
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAE 128
Query: 138 KVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP-ETNVMIMGSGPIGLVTL 195
            V+ P  K  YKL    ++E   +         A R+A++ P +T +++   G +G + +
Sbjct: 129 YVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAV 188
Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
             A+A     II  DV  + +  A+  GAD     S
Sbjct: 189 QIAKAVSGATIIGVDVREEAVEAAKRAGADYVINAS 224

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 24  KTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVH----HFKTMRCANFI-VKKPMVIGHE 77
           K L +Q   +P   GPQ V ++++A G+C SDVH     F  +R    + VK P+ +GHE
Sbjct: 11  KPLSLQEIGVPKPKGPQ-VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
            AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A 
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAE 128
Query: 138 KVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP-ETNVMIMGSGPIGLVTL 195
            V+ P  K  YKL    ++E   +         A R+A++ P +T +++   G +G + +
Sbjct: 129 YVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAV 188
Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
             A+A     II  DV  + +  A+  GAD     S
Sbjct: 189 QIAKAVSGATIIGVDVREEAVEAAKRAGADYVINAS 224

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 10/216 (4%)
Query: 24  KTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVH----HFKTMRCANFI-VKKPMVIGHE 77
           K L +Q   +P   GPQ V ++++A G+C SDVH     F  +R    + VK P+ +GHE
Sbjct: 11  KPLSLQEIGVPKPKGPQ-VLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
            AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A 
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAE 128
Query: 138 KVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP-ETNVMIMGSGPIGLVTL 195
            V+ P  K  YKL    ++E   +         A R+A++ P +T +++   G +G   +
Sbjct: 129 YVIVPHYKYXYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAV 188
Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
             A+A     II  DV  + +  A+  GAD     S
Sbjct: 189 QIAKAVSGATIIGVDVREEAVEAAKRAGADYVINAS 224

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 30/214 (14%)
Query: 38  PQDVKVRIK--ALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK  A+GICG+D H    +   N +   P+++GHE AGI+E VG  V +++ G
Sbjct: 31  PKAYEVRIKMVAVGICGTDDH----VVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPG 86
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTNGSLAHKVVHPAK 144
           D+V       CG C +CK    N C +    G+P              G   H  +  + 
Sbjct: 87  DKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRGKPIHHFLGTST 145
Query: 145 LC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETNVMIMGSGPIGL 192
              Y + D  ++ +     PL          S G   A   A V P +   + G G +GL
Sbjct: 146 FSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGL 205
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 206 SAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +   N +   P+++GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEH----VVSGNLVTPLPVILGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTN 132
            VG  V +++ GD+V       CG C +CK    N C +    G+P             +
Sbjct: 75  SVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKND-LGNPRGTLQDGTRRFTCS 133
Query: 133 GSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPET 180
           G   H  V  +    Y + D  ++ +     PL          S G   A + A V P +
Sbjct: 134 GKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGS 193
Query: 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
              + G G +GL  ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 194 TCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 18  AWLLG----IKTLKIQPYHLPTLGPQDVKVRIKALG--ICGSDVHHFKTMRCANFIVKKP 71
           AW  G    I+ +++ P       P+  +VRI+ +   +C +D++     + A F    P
Sbjct: 14  AWKTGSPLCIEEIEVSP-------PKACEVRIQVIATCVCPTDINATDPKKKALF----P 62
Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           +V+GHECAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P  
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122
Query: 132 NGSL-------------------------AHKVVHPAKLCYKLPDNVSLEEGAM--CEPL 164
           +  L                          + VV  A L  ++ D  +LE   +  C   
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL-ARVDDEANLERVCLIGCGFS 181
Query: 165 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224
           S    A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LGA
Sbjct: 182 SGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 241
Query: 225 DE 226
            +
Sbjct: 242 TD 243

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 18  AWLLG----IKTLKIQPYHLPTLGPQDVKVRIKALG--ICGSDVHHFKTMRCANFIVKKP 71
           AW  G    I+ +++ P       P+  +VRI+ +   +C +D++     + A F    P
Sbjct: 14  AWKTGSPLCIEEIEVSP-------PKACEVRIQVIATCVCHTDINATDPKKKALF----P 62
Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           +V+GHECAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P  
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122
Query: 132 NGSL-------------------------AHKVVHPAKLCYKLPDNVSLEEGAM--CEPL 164
           +  L                          + VV  A L  ++ D  +LE   +  C   
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL-ARVDDEANLERVCLIGCGFS 181
Query: 165 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 224
           S    A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LGA
Sbjct: 182 SGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 241
Query: 225 DE 226
            +
Sbjct: 242 TD 243

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 38  PQDVKVRIK--ALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK  A+GIC +D H    +   N +   P+++GHE AGI+E VG  V +++ G
Sbjct: 31  PKAYEVRIKMVAVGICHTDDH----VVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPG 86
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTNGSLAHKVVHPAK 144
           D+V       CG C +CK    N C +    G+P              G   H  +  + 
Sbjct: 87  DKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRGKPIHHFLGTST 145
Query: 145 LC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETNVMIMGSGPIGL 192
              Y + D  ++ +     PL          S G   A   A V P +   + G G +GL
Sbjct: 146 FSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGL 205
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 206 SAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 38  PQDVKVRIK--ALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK  A+GIC +D H    +   N +   P+++GHE AGI+E VG  V +++ G
Sbjct: 31  PKAYEVRIKMVAVGICRTDDH----VVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPG 86
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTNGSLAHKVVHPAK 144
           D+V       CG C +CK    N C +    G+P              G   H  +  + 
Sbjct: 87  DKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRGKPIHHFLGTST 145
Query: 145 LC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETNVMIMGSGPIGL 192
              Y + D  ++ +     PL          S G   A   A V P +   + G G +GL
Sbjct: 146 FSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGL 205
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 206 SAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 38  PQDVKVRIK--ALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           P+  +VRIK  A+GIC +D H    +   N +   P+++GHE AGI+E VG  V +++ G
Sbjct: 31  PKAYEVRIKMVAVGICRTDDH----VVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPG 86
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTNGSLAHKVVHPAK 144
           D+V       CG C +CK    N C +    G+P              G   H  +  + 
Sbjct: 87  DKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRGKPIHHFLGTST 145
Query: 145 LC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETNVMIMGSGPIGL 192
              Y + D  ++ +     PL          S G   A   A V P +   + G G +GL
Sbjct: 146 FSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGL 205
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 206 SAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 27/232 (11%)
Query: 15  NMAAWLLGIKTLKIQPYHLPTLGPQDVKV------RIKALGICGSDVHHFKTMRCANFIV 68
           N +    G + L+++    P L   + K+      ++ +  ICGSD H ++      FIV
Sbjct: 3   NKSVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR----GRFIV 58
Query: 69  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC------PE 122
            K  V+GHE  G + E GS+V+ +++GD V++   ++CG C  CK    ++C      P+
Sbjct: 59  PKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPD 118
Query: 123 MRF----FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGA-----MCEPLSVGVHAC 171
                  F     +G  A  V+ P    +  K  D     E       + + L  G H C
Sbjct: 119 ADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC 178
Query: 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 223
             A V P ++V I G+GP+G      AR  GA  +I+ D + +RL +  + G
Sbjct: 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG 230

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 28/214 (13%)
Query: 38  PQDVKVRIKAL--GICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           PQ  +VRIK L   +C +D + +            P ++GHE AGI+E VG  V  ++ G
Sbjct: 31  PQAGEVRIKILYTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESVGEGVTEVQAG 87
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMRFF-----------GSPPTNGSLAHKVVHPAK 144
           D V       C  C  CK+G  NLC ++R                  NG   +  +  + 
Sbjct: 88  DHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTST 147
Query: 145 LC-YKLPDNVSLEEGAMCEPLS----------VGVHAC-RRANVGPETNVMIMGSGPIGL 192
              Y +  +VS+ +     PL            G+ A    A V P +NV I G G +GL
Sbjct: 148 FSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGL 207
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
                A+  GA RII  D+D ++   A+  G +E
Sbjct: 208 AVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE 241

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A+GICG+D H    +     +   P+++GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDH----VVSGTMVTPLPVILGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA------- 136
            VG  V +++ GD+V       CG C +CK    N C  ++   S P  G+L        
Sbjct: 75  SVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYC--LKNDVSNP-QGTLQDGTSRFT 131
Query: 137 --HKVVHPAKLCYKLPDNVSLEEGAMCE-----PL----------SVGV-HACRRANVGP 178
              K +H             ++E A+ +     PL          S G   A   A V P
Sbjct: 132 CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTP 191
Query: 179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
            +   + G G +GL  ++  +A GA RII  D++  + + A+ LGA E
Sbjct: 192 GSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATE 239

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 38  PQDVKVRIKAL--GICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           PQ  +VR+K L   +C +D + +            P V+GHE AGI+E VG  V  ++ G
Sbjct: 49  PQAGEVRVKVLYTALCHTDAYTWSGKDPEGLF---PCVLGHEAAGIVESVGEGVTEVQPG 105
Query: 96  DRVALEPGISCGHCSLCKAGSYNLCPEMR-----------------FFGSP-----PTNG 133
           D V       C  C  CK+G  NLC ++R                   G P      T+ 
Sbjct: 106 DHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTST 165
Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGAMCE---PLSVGVHACRRANVGPETNVMIMGSGPI 190
              + VVH   +  K+     LE+  +     P  +G      A V P + V + G G +
Sbjct: 166 FSQYTVVHDVSVA-KIDPVAPLEKVCLLGCGVPTGLGA-VWNTAKVEPGSIVAVFGLGTV 223
Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           GL     A+A GA RII  D+D ++   A+N G  E
Sbjct: 224 GLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTE 259

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDH----VVSGTLVAPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTN 132
            +G  V ++  GD+V       CG CS+CK    NLC  ++    P              
Sbjct: 75  SIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCR 132
Query: 133 GSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPET 180
           G   H  +  +    Y + D +S+ +     PL          S G   A + A V   +
Sbjct: 133 GKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGS 192
Query: 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
              + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 193 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 238

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDH----VVSGTLVAPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-----------PTN 132
            +G  V ++  GD+V       CG CS+CK    NLC  ++    P              
Sbjct: 75  SIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCR 132
Query: 133 GSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPET 180
           G   H  +  +    Y + D +S+ +     PL          S G   A + A V   +
Sbjct: 133 GKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGS 192
Query: 181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
              + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 193 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 238

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)
Query: 19  WLLGIKTLKIQPYHLP--TLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
           W    ++  + P++      G +DV+ ++   G+C SD+H  K     +     P+V GH
Sbjct: 20  WAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMY---PLVPGH 76
Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEM------RFFGSP 129
           E  G + EVGS+VK + VGD+V +   + +C  C  C     N CP+M       +    
Sbjct: 77  EIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGT 136
Query: 130 PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGS 187
            T G  ++ +V   +   + PDN+ L+ GA  +C  ++V           P  ++ I+G 
Sbjct: 137 ITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGL 196
Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           G +G V +  A+AFG+   +I+    ++    +N GAD +  VS D E
Sbjct: 197 GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-SFLVSRDQE 243

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 28/245 (11%)
Query: 15  NMAAWLLGIKTLKIQPYHLPTL-GPQDVKV------RIKALGICGSDVHHFKTMRCANFI 67
           N     LG   +++Q    P +  P+  K+      ++ +  ICGSD H  +    A   
Sbjct: 3   NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV- 61
Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM---R 124
               +V+GHE  G + E G +V++L++GD V++   ++CG C  CK     +C  +   R
Sbjct: 62  ---GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR 118
Query: 125 FFGSPP-------TNGSLAHKVVHPAKL-CYKLPDNVSLEE-----GAMCEPLSVGVHAC 171
             G+         T G   + +V  A     KLPD     E       + + L  G H  
Sbjct: 119 AGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA 178
Query: 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 231
             A VGP + V + G+GP+GL    +AR  GA  +I+ D++  RL+ A+  G  E A +S
Sbjct: 179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-EIADLS 237
Query: 232 TDIEM 236
            D  +
Sbjct: 238 LDTPL 242

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 21  LGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAG 80
           L ++T+ + P         +V+++I A GICGSD    K +  + F    P+++GHE  G
Sbjct: 22  LSLETITVAPPK-----AHEVRIKILASGICGSDSSVLKEIIPSKF----PVILGHEAVG 72
Query: 81  IIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVV 140
           ++E +G+ V  ++ GD+V       CG C  CK+ + N C +            +  +  
Sbjct: 73  VVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT 132
Query: 141 HPAKLCYKLPDNVSLEEGAMCEPLSVG-------VHAC--------------RRANVGPE 179
              K  Y L    +  E  +   ++V        + +C                A V P 
Sbjct: 133 CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKVTPG 192
Query: 180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           +   + G G +G   ++  +A GA RII       +   A  LGA E
Sbjct: 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD      +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSD----DQVVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G +GL  ++  +A GA RII  D++  R + A+ +GA E
Sbjct: 195 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATE 239

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 26/241 (10%)
Query: 8   DEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
           +E  K +   AW  G K L I+   +      +V+++I A  +C +D +   T+  A+  
Sbjct: 3   NEVIKCKAAVAWEAG-KPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPE 58
Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF- 126
              P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R   
Sbjct: 59  GCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 118
Query: 127 --GSPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SV 166
             G  P   S        + H +       Y +  ++S+ +     PL          S 
Sbjct: 119 GKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 178
Query: 167 GV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           G   A   A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA 
Sbjct: 179 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 238
Query: 226 E 226
           E
Sbjct: 239 E 239

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 26/241 (10%)
Query: 8   DEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
           +E  K +   AW  G K L I+   +      +V+++I A  +C +D +   T+  A+  
Sbjct: 2   NEVIKCKAAVAWEAG-KPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPE 57
Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF- 126
              P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R   
Sbjct: 58  GCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 117
Query: 127 --GSPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SV 166
             G  P   S        + H +       Y +  ++S+ +     PL          S 
Sbjct: 118 GKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 177
Query: 167 GV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           G   A   A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA 
Sbjct: 178 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237
Query: 226 E 226
           E
Sbjct: 238 E 238

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 26/241 (10%)
Query: 8   DEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
           +E  K +   AW  G K L I+   +      +V+++I A  +C +D +   T+  A+  
Sbjct: 3   NEVIKCKAAVAWEAG-KPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPE 58
Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF- 126
              P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R   
Sbjct: 59  GCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 118
Query: 127 --GSPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SV 166
             G  P   S        + H +       Y +  ++S+ +     PL          S 
Sbjct: 119 GKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 178
Query: 167 GV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           G   A   A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA 
Sbjct: 179 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 238
Query: 226 E 226
           E
Sbjct: 239 E 239

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G  GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H    +     +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDH----VVSGTLVTPLPVIAGHEAAGIVE 74
Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---------MRFFGSPPT-NG 133
            +G  V ++  GD+V       CG C +CK    N C +         M+   S  T  G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134
Query: 134 SLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL----------SVGV-HACRRANVGPETN 181
              H  +  +    Y + D +S+ +     PL          S G   A + A V   + 
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGST 194
Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
             + G G  GL  ++  +A GA RII  D++  + + A+ +GA E
Sbjct: 195 CAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 39  QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRV 98
           ++V+++I A GIC +D H  K    + F    P+++GHE  GI+E +G  V +++ GD+V
Sbjct: 34  KEVRIKILATGICRTDDHVIKGTMVSKF----PVIVGHEATGIVESIGEGVTTVKPGDKV 89
Query: 99  ALEPGISCGHCSLCKAGSYNLCPEMRFFGSP---------PTNGSLAHKVVHPAKLC-YK 148
                  C  C+ C+    NLC      G              G   H  ++ +    Y 
Sbjct: 90  IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFLNTSTFTEYT 149
Query: 149 LPDNVSLEEGAMCEP----------LSVGV-HACRRANVGPETNVMIMGSGPIGLVTLLA 197
           + D  S+ +     P           S G   A +   V P +  ++ G G +GL  ++ 
Sbjct: 150 VVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMG 209
Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADE 226
            ++ GA RII  D++  +   A  +GA E
Sbjct: 210 CKSAGASRIIGIDLNKDKFEKAMAVGATE 238

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 39  QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRV 98
           ++V+++I A GIC +D H  K    + F    P+++GHE  GI+E +G  V +++ GD+V
Sbjct: 34  KEVRIKILATGICRTDDHVIKGTMVSKF----PVIVGHEATGIVESIGEGVTTVKPGDKV 89
Query: 99  ALEPGISCGHCSLCKAGSYNLCPEMRFFGSP---------PTNGSLAHKVVHPAKLC-YK 148
                  C  C+ C+    NLC      G              G   H  ++ +    Y 
Sbjct: 90  IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYT 149
Query: 149 LPDNVSLEEGAMCEP----------LSVGV-HACRRANVGPETNVMIMGSGPIGLVTLLA 197
           + D  S+ +     P           S G   A +   V P +  ++ G G +GL  ++ 
Sbjct: 150 VVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMG 209
Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADE 226
            ++ GA RII  D++  +   A  +GA E
Sbjct: 210 CKSAGASRIIGIDLNKDKFEKAMAVGATE 238

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  L       P  G  D  VR  A+  C SD+H   T+       +K M++GHE  
Sbjct: 6   MLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIH---TVFEGALGDRKNMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN------G 133
           G + EVGSEVK  + GDRV + P  +    SL     +         G   +N      G
Sbjct: 63  GEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFG 121
Query: 134 SLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
              H  V+ A +    LP ++ LE   M  + ++ G H    A++     V ++G GP+G
Sbjct: 122 EYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVG 179
Query: 192 LVTLLAARAFGAPRII 207
           L+ +  A+  GA RII
Sbjct: 180 LMAVAGAKLRGAGRII 195

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H   T+       +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFK 76
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEM---------------RFFGSPPTNGSLAHK 138
            GDRV +         S  + G +     M                FF     + +LAH 
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH- 135
Query: 139 VVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
                     LP  + LE   M  + ++ G H    AN+     V ++G GP+GL+++  
Sbjct: 136 ----------LPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAG 185
Query: 198 ARAFGAPRIIITDVDVQRLSIARNLGADE 226
           A   GA RI           IA   GA +
Sbjct: 186 ANHLGAGRIFAVGSRKHCCDIALEYGATD 214

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHH-FKTMRCANFIVKKPMVIGHECAGII 82
           K L I+   +      +++++I A G+C +D++H F+      F    P+V+GHE AGI+
Sbjct: 19  KPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF----PVVLGHEGAGIV 74
Query: 83  EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE-------------------- 122
           E VG  V   + G++V       CG C  C++   N C +                    
Sbjct: 75  ESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCK 134
Query: 123 ----MRFFGSPPTNGSLAHKVVHPAKLCYKLP-DNVSLEEGAMCEPLSVGVHACRRANVG 177
               ++F G+   +       +  AK+    P D V L    +       V+    A V 
Sbjct: 135 GRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNT---AKVE 191
Query: 178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           P +   + G G +GL  ++   + GA RII  D++  +   A+  GA +
Sbjct: 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 34/237 (14%)
Query: 18  AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI-VKKPMVIGH 76
           AW  G K L I+   +      +V+++I A  +C +D     T+  + F  +  P+++GH
Sbjct: 16  AWEAG-KPLCIEEVEVAPPKAHEVRIQIIATSLCHTDA----TVIDSKFEGLAFPVIVGH 70
Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL- 135
           E AGI+E +G  V +++ GD+V       C  C  C +   NLC ++    SP ++  L 
Sbjct: 71  EAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLM 130
Query: 136 ------------------------AHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA 170
                                    + VV    L  K+ D+ +LE   +     S G  A
Sbjct: 131 EDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLA-KIDDDANLERVCLLGCGFSTGYGA 189
Query: 171 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
               A V P +   + G G +GL  ++  +A GA RII  D++ ++   A+ LGA +
Sbjct: 190 AINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATD 246

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H   T+       +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFK 76
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEM---------------RFFGSPPTNGSLAHK 138
            GDRV +         S  + G +     M                FF     + +LAH 
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH- 135
Query: 139 VVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
                     LP  + LE   M  + ++ G H    A++     V ++G GP+GL+ +  
Sbjct: 136 ----------LPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAG 185
Query: 198 ARAFGAPRII 207
           A+  GA RII
Sbjct: 186 AKLRGAGRII 195

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 12/214 (5%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  +      +P  GP D  VR  AL  C SD H   T+       +  M++GHE  
Sbjct: 6   MLGIGRIGWIEKKIPECGPLDALVRPLALAPCTSDTH---TVWAGAIGDRHDMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN--GSLAH 137
           G I +VGS VK L+VGD+V + P I+           Y +       G   +N    +  
Sbjct: 63  GQIVKVGSLVKRLKVGDKVIV-PAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFS 121
Query: 138 KVVH----PAKLCYKLPDNVSLEEGAMCEPL-SVGVHACRRANVGPETNVMIMGSGPIGL 192
           +V H     A L   LP ++  E+  M   + + G H    AN+     V ++G GP+GL
Sbjct: 122 EVFHVNEADANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGL 180
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           +++  A   GA RI           IA   GA +
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD 214

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 12/214 (5%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  +      +P  GP D  VR  AL  C SD H   T+       +  M++GHE  
Sbjct: 6   MLGIGRIGWIEKKIPECGPLDALVRPLALAPCTSDTH---TVWAGAIGDRHDMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN--GSLAH 137
           G I +VGS VK L+VGD+V + P I+           Y +       G   +N    +  
Sbjct: 63  GQIVKVGSLVKRLKVGDKVIV-PAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFS 121
Query: 138 KVVH----PAKLCYKLPDNVSLEEGAMCEPL-SVGVHACRRANVGPETNVMIMGSGPIGL 192
           +V H     A L   LP ++  E+  M   + + G H    AN+     V ++G GP+GL
Sbjct: 122 EVFHVNEADANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGL 180
Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
           +++  A   GA RI           IA   GA +
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD 214

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H   T+       +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFK 76
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEM---------------RFFGSPPTNGSLAHK 138
            GDRV +         S  + G +     M                FF     + +LAH 
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH- 135
Query: 139 VVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
                     LP  + LE   M  + ++ G H    A++     V ++G GP+GL+ +  
Sbjct: 136 ----------LPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAVAG 185
Query: 198 ARAFGAPRII 207
           A+  GA RII
Sbjct: 186 AKLRGAGRII 195

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  L       P  G  D  VR  A+  C SD+H   T+       +K M++GHE  
Sbjct: 6   MLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIH---TVFEGALGDRKNMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN------G 133
           G + EVGSEVK  + GDRV + P  +    SL     +         G   +N      G
Sbjct: 63  GEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFG 121
Query: 134 SLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
              H  V+ A +    LP ++ LE   M  + ++ G H    A++   ++V+++G G +G
Sbjct: 122 EYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVG 179
Query: 192 LVTLLAARAFGAPRII 207
           L+ +  A+  GA RII
Sbjct: 180 LMGIAGAKLRGAGRII 195

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  L       P  G  D  VR  A+  C SD+H   T+       +K M++GHE  
Sbjct: 6   MLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIH---TVFEGALGDRKNMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN------G 133
           G + EVGSEVK  + GDRV + P  +    SL     +         G   +N      G
Sbjct: 63  GEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFG 121
Query: 134 SLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
              H  V+ A +    LP ++ LE   M  + ++ G H    A++   ++V+++G G +G
Sbjct: 122 EYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVG 179
Query: 192 LVTLLAARAFGAPRII 207
           L+ +  A+  GA RII
Sbjct: 180 LMGIAGAKLRGAGRII 195

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 8   DEGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
           +E  K +   AW  G K L I+   +      +V+++I A  +C +D +   T+  A+  
Sbjct: 2   NEVIKCKAAVAWEAG-KPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPE 57
Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF- 126
              P+++GH  AGI+E VG  V  L+ GD V       CG C  C     NLC ++R   
Sbjct: 58  GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQ 117
Query: 127 --GSPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SV 166
             G  P   S        + H +       Y +  ++S+ +     PL          S 
Sbjct: 118 GKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 177
Query: 167 GV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           G   A   A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA 
Sbjct: 178 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237
Query: 226 E 226
           E
Sbjct: 238 E 238

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 30/204 (14%)
Query: 20  LLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECA 79
           +LGI  L       P  G  D  VR  A+  C SD+H   T+       +K M++GHE  
Sbjct: 6   MLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIH---TVFEGALGDRKNMILGHEAV 62
Query: 80  GIIEEVGSEVKSLEVGDRV----------ALE-----PGISCGHCSLCKAGSYNLCPEMR 124
           G + EVGSEVK  + GDRV          +LE     P  S G  +  K  ++       
Sbjct: 63  GEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGWKFSNFKDGVFGE 122
Query: 125 FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGPETNVM 183
           +F     + +LA            LP ++ LE   M  + ++ G H    A++   ++V+
Sbjct: 123 YFHVNDADMNLA-----------ILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVV 171
Query: 184 IMGSGPIGLVTLLAARAFGAPRII 207
           ++G G +GL+ +  A+  GA RII
Sbjct: 172 VIGIGAVGLMGIAGAKLRGAGRII 195

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H   T+       +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFK 76
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEM---------------RFFGSPPTNGSLAHK 138
            GDRV +         S  + G +     M                FF     + +LAH 
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH- 135
Query: 139 VVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
                     LP  + LE   M  + ++ G H    A++   ++V+++G G +GL+ +  
Sbjct: 136 ----------LPKEIPLEAAVMIPDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGIAG 185
Query: 198 ARAFGAPRII 207
           A+  GA RII
Sbjct: 186 AKLRGAGRII 195

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H   T+       +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFK 76
Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEM---------------RFFGSPPTNGSLAHK 138
            GDRV +         S  + G +     M                FF     + +LAH 
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAH- 135
Query: 139 VVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA 197
                     LP  + LE   M  + ++ G H    A++   ++V+++G G +GL+ +  
Sbjct: 136 ----------LPKEIPLEAAVMIPDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAG 185
Query: 198 ARAFGAPRII 207
           A+  GA RII
Sbjct: 186 AKLRGAGRII 195

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 15/179 (8%)
Query: 36  LGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
           +GP+DV + I   GIC SD+H   +          PM+ GHE AGII+EVG  VK  ++G
Sbjct: 27  VGPRDVLIDILYAGICHSDIHSAYSEWKEGIY---PMIPGHEIAGIIKEVGKGVKKFKIG 83
Query: 96  DRVALEPGI-SCGHCSLCKAGSYNLCPEM--------RFFGSPPTNGSLAHKVVHPAKLC 146
           D V +   + SC  C  CK      C ++         F  + P  G  ++ +V      
Sbjct: 84  DVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYV 143
Query: 147 YKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA 203
             +  N  LE+ A  +C  ++      + + V   T V + G G +G + +  A A GA
Sbjct: 144 ISVDKNAPLEKVAPLLCAGITT-YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA 201

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 13/213 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           L I+  ++P    ++V +RI   G+C +D+  +K +       + P+++GHE AG I EV
Sbjct: 16  LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGF-RLPIILGHENAGTIVEV 74
Query: 86  GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL 145
           G E+  ++ GD V +        C  C+ G +N+C      G     G   + +V  ++ 
Sbjct: 75  G-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRW 133
Query: 146 CYKLPDNVSLEEGAMCEPLSVGVHACRRA----NVGPETNVMIMGSGPIGLVTLLAARAF 201
             KL     +E   + +  +  + A R+A    +   E  V++ G G + + T+   +A 
Sbjct: 134 LVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKAL 193
Query: 202 GAPRIIITDVDVQR----LSIARNLGADETAKV 230
                 IT V + R       A  LGAD  +++
Sbjct: 194 MKN---ITIVGISRSKKHRDFALELGADYVSEM 223

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 90/218 (41%), Gaps = 20/218 (9%)
Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
           GP DVK+ I   G+C SD+H  ++          P V GHE  G +  VG +V+    GD
Sbjct: 46  GPNDVKIEIAYCGVCHSDLHQVRSEWAGTVY---PCVPGHEIVGRVVAVGDQVEKYAPGD 102
Query: 97  RVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK--------VVHPAKLCY 147
            V +   + SC HC  C+ G  N C  M    + PT     H         VVH     Y
Sbjct: 103 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHER---Y 159
Query: 148 KLPDNVSLEEGAMCEP-LSVGVHA---CRRANVGPETNVMIMGSGPIGLVTLLAARAFGA 203
            L      E+ A   P L  G+      R    GP   V ++G G +G + +  A A GA
Sbjct: 160 VLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA 219
Query: 204 PRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK 241
             +  T  + +R   A+ LGADE        EM    K
Sbjct: 220 HVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLK 256

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 34/198 (17%)
Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
           GPQ V VR KA+G+   D ++   +  A F+   P  +G E AG++E VG EV   +VGD
Sbjct: 27  GPQAVVVRNKAIGLNFIDTYYRSGLYPAPFL---PSGLGAEGAGVVEAVGDEVTRFKVGD 83
Query: 97  RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLE 156
           RVA                          +G+ P  G+ +   V P     KL D+VS E
Sbjct: 84  RVA--------------------------YGTGPL-GAYSEVHVLPEANLVKLADSVSFE 116
Query: 157 EGA--MCEPLSVGVHACRRANVGP-ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV 213
           + A  M + L+V     +   V P E  +    +G +G +    A+A GA ++I T    
Sbjct: 117 QAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSP 175
Query: 214 QRLSIARNLGADETAKVS 231
           ++ + A+ LGA ET   S
Sbjct: 176 EKAAHAKALGAWETIDYS 193

>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 27/231 (11%)
Query: 9   EGDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH----HFKTMRCA 64
           EG   Q+   W    K  K   Y        D+ ++I+A G+CGSD+H    H+  M   
Sbjct: 8   EGIAIQSHEDW----KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNM--- 60
Query: 65  NFIVKKPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGI-SCGHCSLCKAGSYNLCPE 122
               K P+V+GHE  G + ++G +  S L+VG RV +   + SC  C  CK  +   C +
Sbjct: 61  ----KMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTK 116
Query: 123 MRFFGSPP------TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRA 174
                S P      + G  A+ V         +P+N+     A  +C  L+V      R 
Sbjct: 117 FVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV-YSPLVRN 175
Query: 175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
             GP   V I+G G IG +  L ++A GA   +I+    +R   A  +GAD
Sbjct: 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED-AMKMGAD 225

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 11/205 (5%)
Query: 27  KIQPYHLPTLGPQ--DVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE 84
           K++   +P   P+  ++ + +K  G+C +D+H +         VK P+V GHE AG++  
Sbjct: 17  KLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDW--PLPVKLPLVGGHEGAGVVVG 74
Query: 85  VGSEVKSLEVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
           +G  VK  ++GD   ++    SC  C  C+ G+ + CP     G    +GS        A
Sbjct: 75  MGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGY-THDGSFQQYATADA 133
Query: 144 KLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA 200
                +P    L + A  +C  ++V   A + AN+     V I G +G +G + +  A+A
Sbjct: 134 VQAAHIPQGTDLAQVAPILCAGITV-YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKA 192
Query: 201 FGAPRIIITDVDVQRLSIARNLGAD 225
            G  R++  D    +  + R++G +
Sbjct: 193 MGY-RVLGIDGGEGKEELFRSIGGE 216

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 39/170 (22%)
Query: 67  IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
           + K P V+G +  G++E VG+EV     GD V                          + 
Sbjct: 56  VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIV-------------------------YYS 90
Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-----------VGVHACRRAN 175
           GSP  NGS A   +   +L  K P N+S E+ A+  PL+            G+   R  N
Sbjct: 91  GSPDQNGSNAEYQLINERLVAKAPKNISAEQ-AVSLPLTGITAYETLFDVFGISRNRNEN 149
Query: 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
            G +T ++I G+G +G +    A+A+G  R+I T    + +   + +GAD
Sbjct: 150 EG-KTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGAD 197

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
           GP  V++R  A+G+   D +H   +     + + P+V+G E A ++EEVG  V    VG+
Sbjct: 27  GPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGE 86
Query: 97  RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLE 156
           RV          C+                   P  G+ + + ++PA+   K+P ++ L+
Sbjct: 87  RV----------CTCL-----------------PPLGAYSQERLYPAEKLIKVPKDLDLD 119
Query: 157 E----GAMCEPLSVGVHACRRANVGPETNVMI-MGSGPIGLVTLLAARAFGAPRIIITDV 211
           +    G M + ++      +   V P   V+I   +G +G + +  AR  GA  +I T  
Sbjct: 120 DVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVS 178
Query: 212 DVQRLSIARNLGADETAKVST 232
             ++   AR LG   T   ST
Sbjct: 179 TEEKAETARKLGCHHTINYST 199

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 38/142 (26%)
Query: 22  GIKTLKIQPYHLPTLGPQD--VKVRIKALGICGSDVHHFKTMRCANFIV--KKPMVIGHE 77
           G+  L++    +P   PQD  +K+R+KA G+   D+     +R  N     K P+V G E
Sbjct: 14  GLNKLRLFRKAMPE--PQDGELKIRVKACGLNFIDL----MVRQGNIDNPPKTPLVPGFE 67
Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
           C+GI+E +G  VK  E+GDRV                 +YN   E+              
Sbjct: 68  CSGIVEALGDSVKGYEIGDRV-------------MAFVNYNAWAEV-------------- 100
Query: 138 KVVHPAKLCYKLPDNVSLEEGA 159
            V  P +  YK+PD++S  E A
Sbjct: 101 -VCTPVEFVYKIPDDMSFSEAA 121

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 13/204 (6%)
Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           LK+    +P  G  D+ VR  A+ +   D    +T    +     P V   + +G++E V
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGXGLDLAF--PFVPASDXSGVVEAV 98
Query: 86  GSEVKSLEVGDRV--ALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
           G  V     GDRV     PG   G     + G+          G+ P  G L+  VV P 
Sbjct: 99  GKSVTRFRPGDRVISTFAPGWLDG----LRPGTGRTPAYETLGGAHP--GVLSEYVVLPE 152
Query: 144 KLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAF 201
                 P ++   E +   C  L+       + ++     V++ G+G + L  L  A+A 
Sbjct: 153 GWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKAT 212
Query: 202 GAPRIIITDVDVQRLSIARNLGAD 225
           GA  +I+T    ++L  A  LGAD
Sbjct: 213 GA-EVIVTSSSREKLDRAFALGAD 235

>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 14/206 (6%)
Query: 31  YHLPTLGPQDVKVRIKALGICGSDVHHFKT-MRCANFIVKKPMVIGHECAGIIEEVGSEV 89
           Y L   GP+DV +RI   GIC +D+H  K  +  +N+    PMV GHE  G + EVGS+V
Sbjct: 27  YTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNY----PMVPGHEVVGEVVEVGSDV 82
Query: 90  KSLEVGD-RVALEPGISCGHCSLCKAGSYNLCPEM------RFFGSPPTNGSLAHKVVHP 142
               VGD          CG CS C+      CP+        +    PT G  A   V  
Sbjct: 83  SKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVH 142
Query: 143 AKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA 200
            K   K+P+ +++E+ A  +C  ++V           P     I+G G +G + +  A+A
Sbjct: 143 QKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA 202
Query: 201 FGAPRIIITDVDVQRLSIARNLGADE 226
            G    +I+  + +R    ++LGAD+
Sbjct: 203 MGHHVTVISSSNKKREEALQDLGADD 228

>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From Streptomyces Coelicolor A3(2) Length = 456

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 32/227 (14%)
Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHH--FKTMRCANFIVKKPMV-------- 73
           K++ +    +P LGP +  V + A  +  + VH   F+ +    F+ +   V        
Sbjct: 56  KSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHD 115
Query: 74  -----IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN---LCPEMRF 125
                IG + AG++   G  V + + GD V       C    L  +  +N   L PE R 
Sbjct: 116 LPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAH----CLSVELESSDGHNDTMLDPEQRI 171
Query: 126 FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPE 179
           +G     G LA   +  +      PD++S EE A   P  V   A R+      A +   
Sbjct: 172 WGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAA--PGLVNSTAYRQLVSRNGAGMKQG 229
Query: 180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
            NV+I G SG +G      A A GA  I +     Q+  I R +GA+
Sbjct: 230 DNVLIWGASGGLGSYATQFALAGGANPICVVS-SPQKAEICRAMGAE 275

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 26/200 (13%)
Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP--MVIGHECA 79
           G++   +    L + G   +K+R    GICG+D          + + K    +V+GHE  
Sbjct: 12  GVQVKDVDEKKLDSYGK--IKIRTIYNGICGTDREIVNGKLTLSTLPKGKDFLVLGHEAI 69
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--FGSPPTNGSLAH 137
           G++EE          GD V       CG C  C  G  + C    F   G    +G +  
Sbjct: 70  GVVEE---SYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMRE 126
Query: 138 KVVHPAKLCYKLPDNVSLEEGAMCEPLS---------------VGVHACRRANVGPETNV 182
                 K   K+P ++  + G + +PL+               V V  C    +     V
Sbjct: 127 WWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR-KV 184
Query: 183 MIMGSGPIGLVTLLAARAFG 202
           +++G+GPIG++  L  R +G
Sbjct: 185 LVVGTGPIGVLFTLLFRTYG 204

>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 26/200 (13%)
Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP--MVIGHECA 79
           G++   +    L + G   +K+R    GICG+D          + + K    +V+GHE  
Sbjct: 12  GVQVKDVDEKKLDSYGK--IKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAI 69
Query: 80  GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--FGSPPTNGSLAH 137
           G++EE          GD V       CG C  C  G  + C    F   G    +G +  
Sbjct: 70  GVVEE---SYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMRE 126
Query: 138 KVVHPAKLCYKLPDNVSLEEGAMCEPLS---------------VGVHACRRANVGPETNV 182
                 K   K+P ++  + G + +PL+               V V  C    +     V
Sbjct: 127 WWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR-KV 184
Query: 183 MIMGSGPIGLVTLLAARAFG 202
           +++G+GPIG++  L  R +G
Sbjct: 185 LVVGTGPIGVLFTLLFRTYG 204

>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily Protein (np_718042.1) From Shewanella Oneidensis At 1.55 A Resolution Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 29/182 (15%)
Query: 10  GDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVK 69
           G +   + A+     ++ +    +P L   D+ V+ +A+GI   D   +K ++       
Sbjct: 1   GXEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVD---WKFIKANPINWS 57
Query: 70  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 129
              V G + AG+I +VG++V S  +G RVA        H SL + GS+            
Sbjct: 58  NGHVPGVDGAGVIVKVGAKVDSKXLGRRVAY-------HTSLKRHGSF------------ 98
Query: 130 PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSG 188
                 A   V        LPDN+S E  A    PL     A  +  +  +  V+I+G G
Sbjct: 99  ------AEFTVLNTDRVXTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFG 152
Query: 189 PI 190
            +
Sbjct: 153 AV 154

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 43  VRIKALGICGSDVHHFKTMRCANFIV-KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE 101
           VR   +G+CG+D H         F   +  +V+GHE  G++  V      LE GD V   
Sbjct: 30  VRTLRVGVCGTD-HEVIAGGHGGFPEGEDHLVLGHEAVGVV--VDPNDTELEEGDIVV-- 84
Query: 102 PGI----SCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSL 155
           P +    + G     +    ++ P+  +F  G    +G ++     P K   ++P + + 
Sbjct: 85  PTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA- 143
Query: 156 EEGAMCEPLSVG------VHACRRANVGPETNVMIMGSGPIGLVTL 195
           E G + EP+S+        +A R A     ++  ++G+G +GL+TL
Sbjct: 144 ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTL 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-117
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-113
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-108
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-104
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-103
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-102
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	9e-99
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-87
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-84
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-69
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	4e-56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-51
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-50
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-47
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-47
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	5e-40
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-38
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	8e-38
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	5e-37
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	2e-36
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	8e-35
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-34
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	3e-34
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	6e-34
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	3e-33
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	3e-33
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	9e-33
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-32
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-32
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	7e-32
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-31
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-31
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	3e-31
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	4e-31
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-31
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	8e-30
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-22
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	8e-22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	8e-21
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	8e-21
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-20
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-20
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-20
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-19
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-19
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-19
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	4e-19
4eye_A	342	Probable oxidoreductase; structural genomics, niai	6e-19
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-18
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-18
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-17
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-17
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	4e-16
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	6e-16
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	1e-15
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-14
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	6e-14
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	4e-13
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	6e-04

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  338 bits (869), Expect = e-117
 Identities = 109/222 (49%), Positives = 153/222 (68%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 5   KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 64

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 65  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 124

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIG 184

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           +VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S +
Sbjct: 185 MVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  327 bits (841), Expect = e-113
 Identities = 112/220 (50%), Positives = 154/220 (70%), Gaps = 1/220 (0%)

Query: 13  NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM 72
           + N++A L     L+++   +P     +V +++  +GICGSDVH+++  R A+FIVK PM
Sbjct: 3   SDNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPM 62

Query: 73  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
           VIGHE +G + +VG  VK L+ GDRVA+EPG+ C  C  CK G YNLCP++ F  +PP +
Sbjct: 63  VIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD 122

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
           G+LA   VH A  C+KLPDNVSLEEGA+ EPLSVGVHACRRA V   T V+++G+GPIGL
Sbjct: 123 GNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGL 182

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 232
           V++LAA+A+GA  ++ T    +RL +A+N GAD T  V  
Sbjct: 183 VSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP 221

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  316 bits (812), Expect = e-108
 Identities = 87/228 (38%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 14  QNMAAWLLGIKTLKIQPYHL--------PTLGPQDVKVRIKALGICGSDVHHFKTMRCAN 65
            N+  +      L I               L   +V V +++ GICGSDVH +K      
Sbjct: 8   TNIGVFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGP 67

Query: 66  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 125
            IV+   V+GHE AG +  V   VKS++VGDRVA+EP + C  C  C  G YN C  + F
Sbjct: 68  MIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF 127

Query: 126 FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIM 185
             +PP  G L   V HPA  C+K+ + +S E GAM EPLSV +   +RA V     V+I 
Sbjct: 128 LSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLIC 186

Query: 186 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           G+GPIGL+T+L A+A GA  ++ITD+D  RL  A+ +  +        
Sbjct: 187 GAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVER 234

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  305 bits (784), Expect = e-104
 Identities = 71/209 (33%), Positives = 112/209 (53%), Gaps = 1/209 (0%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
            A L   + L +    +P  GP ++ VR++A  ICG+D+H +K    A   ++ P+V GH
Sbjct: 4   LAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGH 63

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA 136
           E +G++E VG  V+  +VGD V+LE  I C  C  C+ G+Y++C   +  G    +G  A
Sbjct: 64  EFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDR-DGGFA 122

Query: 137 HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL 196
             VV PA+  +  P ++  E  A+ EP    VH     +     +V+I G+GPIGL+  +
Sbjct: 123 EYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAM 182

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGAD 225
             RA GA  I+++D +  RL+ AR     
Sbjct: 183 VVRASGAGPILVSDPNPYRLAFARPYADR 211

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  301 bits (773), Expect = e-103
 Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 17  AAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIG 75
           +        +++    +P +    +V+V+I + G+CGSD+         N     P+ +G
Sbjct: 3   SVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF----KNGAHYYPITLG 58

Query: 76  HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           HE +G I+ VGS V  L  GD VA  P + C  C  C  G Y+ C +  F GS   +G  
Sbjct: 59  HEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGF 117

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTL 195
           A  +V   K  + LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +
Sbjct: 118 AEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAI 177

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADET 227
             A A GA  +   D+  ++L++A++ GA +T
Sbjct: 178 QCAVALGAKSVTAIDISSEKLALAKSFGAMQT 209

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  301 bits (773), Expect = e-102
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 1   MAEAIRDDEGDKNQNM-----AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDV 55
              +   D G +N        A  L  +  + ++   +P  GP D+ V+++A GICG+D 
Sbjct: 5   HHHSSGVDLGTENLYFQSMMKAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDR 64

Query: 56  HHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAG 115
           H         F    P+ +GHE  GI+ E GS V+ +  G R+  +P ISCG C  C+AG
Sbjct: 65  HLLH----GEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAG 120

Query: 116 SYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRAN 175
             NLC  +R  G    +G  A  V+ P K  +++P  +    GA CEPL+  +H    + 
Sbjct: 121 RVNLCRNLRAIGIHR-DGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSG 179

Query: 176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +   + V I+G G IGL+T+  AR  GA  +I++     +  +A  +GA  T
Sbjct: 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT 231

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  291 bits (746), Expect = 9e-99
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 14  QNMAAWLLG--IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           + M A +        ++    +P  GP +V +++ A  ICG+D+H ++    A   +K P
Sbjct: 3   EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPP 62

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
            ++GHE AG + E+G  V+ +EVGD V++E  I CG C  C+ G Y++C   + FG    
Sbjct: 63  QIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDT- 121

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G  A   V PA+  +K P ++  E   + EPL   V       +  ++ V+I G+GP+G
Sbjct: 122 DGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLG 180

Query: 192 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
           L+ +  A+A GA  +I+++    R  +A+ +GAD       +
Sbjct: 181 LLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEE 222

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  262 bits (671), Expect = 2e-87
 Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 18/234 (7%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
            A   G     +     P     +  VR   +G+CG+D              +  +V+GH
Sbjct: 4   IAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGH 63

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPG--ISCGHCSLCKAGSYNLCPEMRFFGS--PPTN 132
           E  G++ +       LE GD V        + G     +    ++ P+  +F       +
Sbjct: 64  EAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH 121

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV------GPETNVMIMG 186
           G ++     P K   ++P + + E G + EP+S+   A   A           ++  ++G
Sbjct: 122 GYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLG 180

Query: 187 SGPIGLVTLLAARAF--GAPRIII---TDVDVQRLSIARNLGADETAKVSTDIE 235
           +G +GL+TL   +    G   +      D     + I   L A       T +E
Sbjct: 181 NGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVE 234

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  256 bits (655), Expect = 2e-84
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 21/243 (8%)

Query: 11  DKNQNMAAWLLGIKTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIV- 68
            K   + + +     ++++    P +  P ++ +++KA GICGSDVH  +T      +  
Sbjct: 27  GKLTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYP 86

Query: 69  ---KKPMVIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNL 119
                P+ +GHE +G++ E G E       K  E+G+ V  E  + CGHC  C  G  N 
Sbjct: 87  GLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNH 146

Query: 120 CPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD-------NVSLEEGAMCEPLSVGVHAC- 171
           C  +   G    +G+ A  V   AK  + L +       +     G++ EP SV  +A  
Sbjct: 147 CENLNELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVI 205

Query: 172 -RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 230
            R   + P  NV+I+G GPIGL  +   +  GA ++I+++    R ++A+ LGAD     
Sbjct: 206 VRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDP 265

Query: 231 STD 233
           + +
Sbjct: 266 TKE 268

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  216 bits (553), Expect = 2e-69
 Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 22/217 (10%)

Query: 37  GPQDVKVRIKALGICGSDVH--HFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV 94
               +K+R    GICG+D    + K         K  +V+GHE  G++EE          
Sbjct: 25  SYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEESYHGFS---Q 81

Query: 95  GDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--PPTNGSLAHKVVHPAKLCYKLPDN 152
           GD V       CG C  C  G  + C    F  +     +G +        K   K+P +
Sbjct: 82  GDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKS 141

Query: 153 VSLEEGAMCEPLSVGVHACRRA--------------NVGPETNVMIMGSGPIGLVTLLAA 198
           +  + G + +PL+    +                         V+++G+GPIG++  L  
Sbjct: 142 IE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLF 200

Query: 199 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 235
           R +G    +    +   +              S++  
Sbjct: 201 RTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGY 237

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  182 bits (465), Expect = 4e-56
 Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 19/220 (8%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L  + + +  +    + V I + G+CGSDVH     R  +  V  P+++GHE AG + 
Sbjct: 28  QPLVYKEFEISDIPRGSILVEILSAGVCGSDVH---MFRGEDPRVPLPIILGHEGAGRVV 84

Query: 84  EVGSEVKS-----LEVGDRVALEPGISCGHCSLCKAG-SYNLCPEMRFFGSPPTNGSLAH 137
           EV  E +      L+ GD +    GI+CG C  CK      LCP  + +G         H
Sbjct: 85  EVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPH 144

Query: 138 K--------VVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRR-ANVGPETNVMIMGS 187
                    V+ P     K+ +   L+  AM     +   HA            V+I G+
Sbjct: 145 LRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA 204

Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           GP+GL  ++ AR+ GA  +I+      RL +A  +GAD T
Sbjct: 205 GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT 244

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  170 bits (432), Expect = 2e-51
 Identities = 59/200 (29%), Positives = 84/200 (42%), Gaps = 10/200 (5%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P  GP D  VR  A+  C SD+H            +  M++GHE  G + EVGSEVK  +
Sbjct: 20  PAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEVKDFK 76

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN---GSLAHKV-VHPAKL-CYK 148
            GDRV +         S  + G +     M   G   +N   G       V+ A +    
Sbjct: 77  PGDRVVVPAITPDWRTSEVQRGYHQHSGGM-LAGWKFSNVKDGVFGEFFHVNDADMNLAH 135

Query: 149 LPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRII 207
           LP  + LE   M  + ++ G H    AN+     V ++G GP+GL+++  A   GA RI 
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIF 195

Query: 208 ITDVDVQRLSIARNLGADET 227
                     IA   GA + 
Sbjct: 196 AVGSRKHCCDIALEYGATDI 215

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  167 bits (424), Expect = 2e-50
 Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 14/214 (6%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFK-----TMRCANFIVKKPMVIGHEC 78
           K L +Q   +P      V ++++A G+C SDVH  +          +  VK P+ +GHE 
Sbjct: 11  KPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEI 70

Query: 79  AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A  
Sbjct: 71  AGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEY 129

Query: 139 VVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRANVGPETNVMIMG-SGPIGLV 193
           V+ P          ++  E A   PL+  G+    A R+A++ P   ++++G  G +G +
Sbjct: 130 VIVPHYKYMYKLRRLNAVEAA---PLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTM 186

Query: 194 TLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
            +  A+A     II  DV  + +  A+  GAD  
Sbjct: 187 AVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV 220

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  160 bits (407), Expect = 1e-47
 Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 8/218 (3%)

Query: 24  KTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGII 82
           K L+I+    P L G  DV VRI   G+C +D+H  + M       K P  +GHE  G I
Sbjct: 26  KPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYI 85

Query: 83  EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
           EEV   V+ LE GD V L P ++ G C  C+AG    C  + F G    +G  A  +   
Sbjct: 86  EEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTS 144

Query: 143 AKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRA--NVGPETNVMIMGSGPIGLVTLL 196
            +   KLP ++S E+     PL+  G+    A ++A   + P   V I+G G +G + + 
Sbjct: 145 HRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQ 204

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI 234
             +      +I  DV  ++L +A  LGAD       D 
Sbjct: 205 LLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDP 242

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  159 bits (404), Expect = 2e-47
 Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 10/219 (4%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
               +     PT GP ++ +++ A G+C SD+     M  A +    P+ +GHE  G + 
Sbjct: 11  SEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIF-VMDMPAAQYAYGLPLTLGHEGVGTVA 69

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP----TNGSLAHKV 139
           E+G  V    VGD VA+     CG C  C  G  N C      G  P    + GS+A  +
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYM 129

Query: 140 VHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRR--ANVGPETNVMIMGSGPIGLVTL 195
           +  +        ++     A      L+   HA  R    +GP +  +++G G +G V +
Sbjct: 130 IVDSARHLVPIGDLDPVAAAPLTDAGLTPY-HAISRVLPLLGPGSTAVVIGVGGLGHVGI 188

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI 234
              RA  A R+I  D+D  RL++AR +GAD   K     
Sbjct: 189 QILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGA 227

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  140 bits (354), Expect = 5e-40
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L I+  ++P    ++V +RI   G+C +D+        A    + P+++GHE AG I 
Sbjct: 14  EPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLR-VWKGVEAKQGFRLPIILGHENAGTIV 72

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
           EVG E+  ++ GD V +        C  C+ G +N+C      G   TNG  +  ++  +
Sbjct: 73  EVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQ-TTNGGFSEYMLVKS 130

Query: 144 KLCYKLPDNVSLEEGAMCEPLSV-GV---HACRRA----NVGPETNVMIMGSGPIGLVTL 195
                  +++S  E A   PL+  G     A R+A    +   E  V++ G G + + T+
Sbjct: 131 SRWLVKLNSLSPVEAA---PLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTI 187

Query: 196 LAARAFGA-PRIIITDVDVQRLSIARNLGADET 227
              +A      I+      +    A  LGAD  
Sbjct: 188 QILKALMKNITIVGISRSKKHRDFALELGADYV 220

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  137 bits (347), Expect = 1e-38
 Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 20/204 (9%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
              V +++ +  ICGSD H  +         +  +V+GHE  G + E G +V++L++GD 
Sbjct: 33  EHGVILKVVSTNICGSDQHMVRGR----TTAQVGLVLGHEITGEVIEKGRDVENLQIGDL 88

Query: 98  VALEPGISCGHCSLCKAGSYNLC------PEMRFFGSP---PTNGSLAHKVVHP-AKL-C 146
           V++   ++CG C  CK     +C           +G        G  A  V+ P A    
Sbjct: 89  VSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNL 148

Query: 147 YKLPDNVSLEEG-----AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAF 201
            KLPD     E       + + L  G H    A VGP + V + G+GP+GL    +AR  
Sbjct: 149 LKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLL 208

Query: 202 GAPRIIITDVDVQRLSIARNLGAD 225
           GA  +I+ D++  RL+ A+  G +
Sbjct: 209 GAAVVIVGDLNPARLAHAKAQGFE 232

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  135 bits (342), Expect = 8e-38
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 21/204 (10%)

Query: 38  PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR 97
              V +++ +  ICGSD H ++      FIV K  V+GHE  G + E GS+V+ +++GD 
Sbjct: 32  EHAVILKVVSTNICGSDQHIYRGR----FIVPKGHVLGHEITGEVVEKGSDVELMDIGDL 87

Query: 98  VALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT----------NGSLAHKV-VHPAKL- 145
           V++   ++CG C  CK    ++C                     +G  A  V V  A   
Sbjct: 88  VSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYM 147

Query: 146 CYKLPDNVSLEEG-----AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA 200
             K  D     E       + + L  G H C  A V P ++V I G+GP+G      AR 
Sbjct: 148 LLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARL 207

Query: 201 FGAPRIIITDVDVQRLSIARNLGA 224
            GA  +I+ D + +RL +  + G 
Sbjct: 208 LGAACVIVGDQNPERLKLLSDAGF 231

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  131 bits (333), Expect = 5e-37
 Identities = 69/220 (31%), Positives = 97/220 (44%), Gaps = 34/220 (15%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH------HFKTMRCANFIVKKPMVIGHE 77
             L I    +P  GP  V+V+I+A G+C +D+H        K           P + GHE
Sbjct: 13  APLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKP--------TLPFIPGHE 64

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSPPTN 132
             G +  VGS V  ++ GDRV    G+     +CG+C  C  G   LC + +  G    N
Sbjct: 65  GVGYVSAVGSGVSRVKEGDRV----GVPWLYSACGYCEHCLQGWETLCEKQQNTGY-SVN 119

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVGPETNVMIMGS 187
           G     VV        LPD V   E A  +C     GV      +  +  P   V+I G 
Sbjct: 120 GGYGEYVVADPNYVGLLPDKVGFVEIAPILC----AGVTVYKGLKVTDTRPGQWVVISGI 175

Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           G +G V +  ARA G  R+   D+D  +L++AR LGA+  
Sbjct: 176 GGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVA 214

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  130 bits (330), Expect = 2e-36
 Identities = 76/215 (35%), Positives = 104/215 (48%), Gaps = 24/215 (11%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-NFIVKKPMVIGHECAGII 82
           + LKI+    PT+   +V VRIKA G+C +D+H             K P++ GHE  GI+
Sbjct: 11  EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLH---AAHGDWPVKPKLPLIPGHEGVGIV 67

Query: 83  EEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
           EEVG  V  L+VGDRV    GI     +CGHC  C +G   LC   +  G    +G  A 
Sbjct: 68  EEVGPGVTHLKVGDRV----GIPWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAE 122

Query: 138 KVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVGPETNVMIMGSGPIGL 192
                A    K+PDN+S EE A   C     GV    A +     P   V I G G +G 
Sbjct: 123 YCRAAADYVVKIPDNLSFEEAAPIFC----AGVTTYKALKVTGAKPGEWVAIYGIGGLGH 178

Query: 193 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           V +  A+A G   ++  D+  ++L +A+ LGAD  
Sbjct: 179 VAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLV 212

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  126 bits (318), Expect = 8e-35
 Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 13/220 (5%)

Query: 16  MAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           M A ++    G + L++    +P  GP++V+VR+KA  +   DV   K +  A+  +  P
Sbjct: 1   MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGV--ASPKLPLP 58

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
            V+G + +G+++ VG  V+    GD V + PG+SCG C  C AG  NLCP  +  G    
Sbjct: 59  HVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHR- 117

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--HA-CRRANVGPETNVMIMG-S 187
           +G+ A  VV P       P N+S EE A   PL+          +  V P  +V++M   
Sbjct: 118 HGTYAEYVVLPEANLAPKPKNLSFEEAA-AIPLTFLTAWQMVVDKLGVRPGDDVLVMAAG 176

Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
             + +  +  A+ FGA R+I T     +L  A+ LGADET
Sbjct: 177 SGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADET 215

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  126 bits (319), Expect = 1e-34
 Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 43/235 (18%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
              ++Q   +      +V V++ A G+C +D+     +R   + V  P V+GHE +GIIE
Sbjct: 17  ADFELQALKIRQPQGDEVLVKVVATGMCHTDLI----VRDQKYPVPLPAVLGHEGSGIIE 72

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------------------- 124
            +G  V  L+VGD V L  G  CG C+ C  G+   C E                     
Sbjct: 73  AIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHD 131

Query: 125 -------FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----ACR 172
                  FF       S A   +       K+  +V +E      PL  G+         
Sbjct: 132 QGVVNDHFFAQ----SSFATYALSRENNTVKVTKDVPIELLG---PLGCGIQTGAGACIN 184

Query: 173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              V P ++ +  G+G +GL  LLAA+  GA  II  D+   RL +A+ LGA   
Sbjct: 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV 239

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  124 bits (315), Expect = 3e-34
 Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 35/221 (15%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCAN---FIVKKPMVIGHECAG 80
             L+ +   +P     ++ + +K  G+C +D+H              VK P+V GHE AG
Sbjct: 16  GKLEYKDIPVPKPKANELLINVKYSGVCHTDLH---AWH--GDWPLPVKLPLVGGHEGAG 70

Query: 81  IIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSL 135
           ++  +G  VK  ++GD      GI     SC  C  C+ G+ + CP     G    +GS 
Sbjct: 71  VVVGMGENVKGWKIGDYA----GIKWLNGSCMACEYCELGNESNCPHADLSGY-THDGSF 125

Query: 136 AHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVGPETNVMIMGSGPI 190
                  A     +P    L + A  +C     G+    A + AN+     V I G+   
Sbjct: 126 QQYATADAVQAAHIPQGTDLAQVAPILC----AGITVYKALKSANLMAGHWVAISGAAG- 180

Query: 191 GL----VTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           GL    V    A+A G  R++  D    +  + R++G +  
Sbjct: 181 GLGSLAVQY--AKAMGY-RVLGIDGGEGKEELFRSIGGEVF 218

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  124 bits (313), Expect = 6e-34
 Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 36/236 (15%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
             K  K   Y        D+ ++I+A G+CGSD+H           +K P+V+GHE  G 
Sbjct: 17  DWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIH---CAAGHWGNMKMPLVVGHEIVGK 73

Query: 82  IEEVGSEVKS-LEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF-FGSPPTNGS 134
           + ++G +  S L+VG RV    G+     SC  C  CK  +   C +    +  P  +G 
Sbjct: 74  VVKLGPKSNSGLKVGQRV----GVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGY 129

Query: 135 L-----AHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHACRRANVGPETN 181
           +     A+ V         +P+N+     A  +C       PL        R   GP   
Sbjct: 130 VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPL-------VRNGCGPGKK 182

Query: 182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMW 237
           V I+G G IG +  L ++A GA   +I+    +R   A  +GAD     + +   W
Sbjct: 183 VGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKMGADHYI-ATLEEGDW 236

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  123 bits (310), Expect = 3e-33
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 39/240 (16%)

Query: 18  AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHE 77
           AW  G   L I+   +      +V++++ A  +C +D++     + A F    P+V+GHE
Sbjct: 14  AWKTG-SPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF----PVVLGHE 68

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLA- 136
           CAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P  +  L  
Sbjct: 69  CAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELME 128

Query: 137 ------------------------HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH--- 169
                                   + VV  A L  ++ D  +LE       +  G     
Sbjct: 129 DRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVC---LIGCGFSSGY 184

Query: 170 --ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
             A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LGA + 
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  122 bits (308), Expect = 3e-33
 Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 36/222 (16%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
            K   +    +GP+DV + I   GIC SD+H   +          PM+ GHE AGII+EV
Sbjct: 17  FKPHDFSRHAVGPRDVLIDILYAGICHSDIH---SAYSEWKEGIYPMIPGHEIAGIIKEV 73

Query: 86  GSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEM--------RFFGSPPTN 132
           G  VK  ++GD V    G+     SC  C  CK      C ++         F  + P  
Sbjct: 74  GKGVKKFKIGDVV----GVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHM 129

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHACRRANVGPETNVMI 184
           G  ++ +V        +  N  LE+ A  +C       PL       + + V   T V +
Sbjct: 130 GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-------KFSKVTKGTKVGV 182

Query: 185 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
            G G +G + +  A A GA   +    + ++   A ++G   
Sbjct: 183 AGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-QDALSMGVKH 223

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  121 bits (306), Expect = 9e-33
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 35/218 (16%)

Query: 36  LGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVG 95
            G +DV+ ++   G+C SD+H   +++        P+V GHE  G + EVGS+VK + VG
Sbjct: 39  TGEEDVRFKVLYCGVCHSDLH---SIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVG 95

Query: 96  DRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF-FGSPPTNGSLAH-----KVVHPAK 144
           D+V    G+     +C  C  C     N CP+M   + S   +G++ +      +V   +
Sbjct: 96  DKV----GVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANER 151

Query: 145 LCYKLPDNVSLEEGA--MC------EPLSVGVHACRRANVG-PETNVMIMGSGPIGLVTL 195
              + PDN+ L+ GA  +C       PL       +   +  P  ++ I+G G +G V +
Sbjct: 152 YIIRFPDNMPLDGGAPLLCAGITVYSPL-------KYFGLDEPGKHIGIVGLGGLGHVAV 204

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 233
             A+AFG+   +I+    ++    +N GAD    VS D
Sbjct: 205 KFAKAFGSKVTVISTSPSKKEEALKNFGADSFL-VSRD 241

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  122 bits (307), Expect = 1e-32
 Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 24/227 (10%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDV---------------HHFKTMRCANF 66
             K+L++    +P L P +V V + A  I  + V                + +    A  
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 67  IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
             +   V+G +C+G++   G  V+  + GD V + P            G   L  E R +
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH-VDEQEPATHGDGMLGTEQRAW 164

Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-----VHACRRANVGPETN 181
           G     G LA   V  A      P +++ EE A   PL  G     + + R A +     
Sbjct: 165 GFETNFGGLAEYGVVRASQLLPKPAHLTWEEAA-VSPLCAGTAYRMLVSDRGAQMKQGDI 223

Query: 182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           V+I G SG +G   +   +  G    +      Q+ +  R LG D  
Sbjct: 224 VLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLV 269

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  119 bits (301), Expect = 3e-32
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 35/231 (15%)

Query: 31  YHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK 90
           Y L   GP+DV +RI   GIC +D+H     +    +   PMV GHE  G + EVGS+V 
Sbjct: 27  YTLRETGPEDVNIRIICCGICHTDLH---QTKNDLGMSNYPMVPGHEVVGEVVEVGSDVS 83

Query: 91  SLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF-FGSPPTNGSLAH-----KV 139
              VGD V    G+      CG CS C+      CP+  + +     NG           
Sbjct: 84  KFTVGDIV----GVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKAT 139

Query: 140 VHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHACRRANVG-PETNVMIMGSGPI 190
           V   K   K+P+ +++E+ A  +C       PL           +  P     I+G G +
Sbjct: 140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-------SHFGLKQPGLRGGILGLGGV 192

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK 241
           G + +  A+A G    +I+  + +R    ++LGAD+   + +D        
Sbjct: 193 GHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYV-IGSDQAKMSELA 242

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  119 bits (300), Expect = 7e-32
 Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 33/217 (15%)

Query: 37  GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGD 96
              +V+++I A  +C +D +   T+  A+     P+++GH  AGI+E VG  V  L+ GD
Sbjct: 30  KAHEVRIKIIATAVCHTDAY---TLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGD 86

Query: 97  RVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGS--------LAH-------- 137
            V       CG C  C     NLC ++R     G  P   S        + H        
Sbjct: 87  TVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFS 146

Query: 138 --KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----ACRRANVGPETNVMIMGSGPI 190
              VV    +  K+     L++  +   L  G+      A   A + P +   + G G +
Sbjct: 147 EYTVVADISVA-KIDPLAPLDKVCL---LGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV 202

Query: 191 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           GL  ++  +  GA RII  D++  + + A+  GA E 
Sbjct: 203 GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  118 bits (297), Expect = 2e-31
 Identities = 61/239 (25%), Positives = 90/239 (37%), Gaps = 37/239 (15%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV 85
           L+         GP DVK+ I   G+C SD+H    +R        P V GHE  G +  V
Sbjct: 35  LEPMDITRREPGPNDVKIEIAYCGVCHSDLH---QVRSEWAGTVYPCVPGHEIVGRVVAV 91

Query: 86  GSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF-------FGSPPTNG 133
           G +V+    GD V    G+     SC HC  C+ G  N C  M              T G
Sbjct: 92  GDQVEKYAPGDLV----GVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLG 147

Query: 134 SLAHKVVHPAKLCYKLPDNVSLEEGA---MC------EPLSVGVHACRRANVGPETNVMI 184
             + ++V   +   ++             +C       PL       R    GP   V +
Sbjct: 148 GYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPL-------RHWQAGPGKKVGV 200

Query: 185 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ 243
           +G G +G + +  A A GA  +  T  + +R   A+ LGADE    S + +    +   
Sbjct: 201 VGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADEVV-NSRNADEMAAHLKS 257

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  118 bits (297), Expect = 2e-31
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 34/236 (14%)

Query: 18  AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHE 77
           AW    K L I+   +      +++++I A G+C +D++H             P+V+GHE
Sbjct: 14  AWEAN-KPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFE---GKHKDGFPVVLGHE 69

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGS 134
            AGI+E VG  V   + G++V       CG C  C++   N C +              +
Sbjct: 70  GAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKET 129

Query: 135 --------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----AC 171
                   +             VV+   +  K+  +  L+   +   L  GV      A 
Sbjct: 130 RFTCKGRKVLQFLGTSTFSQYTVVNQIAVA-KIDPSAPLDTVCL---LGCGVSTGFGAAV 185

Query: 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
             A V P +   + G G +GL  ++   + GA RII  D++  +   A+  GA + 
Sbjct: 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF 241

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  117 bits (296), Expect = 3e-31
 Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 35/236 (14%)

Query: 18  AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHE 77
            W    K   I+   +      +V++++ A GIC SD H              P++ GHE
Sbjct: 14  LWEEK-KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL----PVIAGHE 68

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGS 134
            AGI+E +G  V ++  GD+V       CG C +CK    N C +       G+     S
Sbjct: 69  AAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTS 128

Query: 135 --------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-----AC 171
                   + H           VV    +  K+     LE+  +   +  G       A 
Sbjct: 129 RFTCRGKPIHHFLGTSTFSQYTVVDEISVA-KIDAASPLEKVCL---IGCGFSTGYGSAV 184

Query: 172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           + A V   +   + G G +GL  ++  +A GA RII  D++  + + A+ +GA E 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 240

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  116 bits (294), Expect = 4e-31
 Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 18  AWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHE 77
           AW    K L ++   +      +V+++I A GICGSD    K +  + F    P+++GHE
Sbjct: 15  AWEPH-KPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF----PVILGHE 69

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSPPTNGS 134
             G++E +G+ V  ++ GD+V       CG C  CK+ + N C +       G      S
Sbjct: 70  AVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTS 129

Query: 135 --------LAH---------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC-RRANV 176
                   + +           V       K+     LE   +    + G  A    A V
Sbjct: 130 RFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKV 189

Query: 177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
            P +   + G G +G   ++  +A GA RII       +   A  LGA E 
Sbjct: 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC 240

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  116 bits (294), Expect = 4e-31
 Identities = 52/221 (23%), Positives = 80/221 (36%), Gaps = 16/221 (7%)

Query: 14  QNMAAWLL---GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK 70
           + M  W         LK+    +P  G  D+ VR  A+ +   D             +  
Sbjct: 26  KWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAF 83

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
           P V   + +G++E VG  V     GDRV                G     P     G   
Sbjct: 84  PFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTG---RTPAYETLGG-A 139

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HA-CRRANVGPETNVMIMG 186
             G L+  VV P       P ++   E +   P   G+    A   + ++     V++ G
Sbjct: 140 HPGVLSEYVVLPEGWFVAAPKSLDAAEAS-TLPC-AGLTAWFALVEKGHLRAGDRVVVQG 197

Query: 187 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           +G + L  L  A+A GA  +I+T    ++L  A  LGAD  
Sbjct: 198 TGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHG 237

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  114 bits (288), Expect = 8e-30
 Identities = 56/242 (23%), Positives = 87/242 (35%), Gaps = 29/242 (11%)

Query: 12  KNQNMAAWLL-----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDV----------- 55
               M A L        K++ +    +P LGP +  V + A  +  + V           
Sbjct: 39  DETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTF 98

Query: 56  -HHFKTMRCANFIVKKPM---VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSL 111
               +  R ++   +  +   VIG + AG++   G  V + + GD V           S 
Sbjct: 99  GFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSD 158

Query: 112 CKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG---- 167
                  L PE R +G     G LA   +  +      PD++S EE A    L       
Sbjct: 159 G-HNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAA-APGLVNSTAYR 216

Query: 168 -VHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
            + +   A +    NV+I G SG +G      A A GA   I      Q+  I R +GA+
Sbjct: 217 QLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAE 275

Query: 226 ET 227
             
Sbjct: 276 AI 277

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 92.6 bits (231), Expect = 3e-22
 Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 39/201 (19%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIEEVGSEVK 90
           +P      V +++ A G+   + +     R   +  K   P   G + AG+IE VG    
Sbjct: 52  VPIPKDHQVLIKVHACGVNPVETYI----RSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS 107

Query: 91  SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
           + + GDRV           S   +G Y                  A   +      YKLP
Sbjct: 108 AFKKGDRVF---------TSSTISGGY------------------AEYALAADHTVYKLP 140

Query: 151 DNVSLEEGAMCEPLSVG-VHAC--RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRI 206
           + +  ++GA    +     +      A V    +V++ G SG +GL     ARA+G  +I
Sbjct: 141 EKLDFKQGA-AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KI 198

Query: 207 IITDVDVQRLSIARNLGADET 227
           + T    +   I    GA E 
Sbjct: 199 LGTAGTEEGQKIVLQNGAHEV 219

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 91.1 bits (227), Expect = 8e-22
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 33/211 (15%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G      +   + + GP  V++R  A+G+   D +H   +     + + P+V+G E A +
Sbjct: 12  GPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAV 71

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +EEVG  V    VG+RV                              P   G+ + + ++
Sbjct: 72  VEEVGPGVTDFTVGERVC-------------------------TCLPPL--GAYSQERLY 104

Query: 142 PAKLCYKLPDNVSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIM-GSGPIGLVTLL 196
           PA+   K+P ++ L++  +   +  G+ A     +   V P   V+I   +G +G + + 
Sbjct: 105 PAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVP 164

Query: 197 AARAFGAPRIIITDVDVQRLSIARNLGADET 227
            AR  GA  +I T    ++   AR LG   T
Sbjct: 165 WARHLGA-TVIGTVSTEEKAETARKLGCHHT 194

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 88.4 bits (220), Expect = 8e-21
 Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 56/220 (25%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI-----------VKK 70
           G + L+   +        +++V  KA+GI              NFI              
Sbjct: 12  GPEVLQAVEFTPADPAENEIQVENKAIGI--------------NFIDTYIRSGLYPPPSL 57

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
           P  +G E AGI+ +VGS VK ++ GDRV                          +  S  
Sbjct: 58  PSGLGTEAAGIVSKVGSGVKHIKAGDRVV-------------------------YAQSAL 92

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 187
             G+ +      A     LP  +S E+ A    + L+V     +   + P+   +    +
Sbjct: 93  --GAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAA 150

Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           G +GL+    A+A GA ++I T    Q+   A   GA + 
Sbjct: 151 GGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQV 189

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 88.9 bits (221), Expect = 8e-21
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 39/212 (18%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--VIGHECAGI 81
           K ++++   L  +   DV+V++ A  I  SD++    M   N+ +   +  V G+E    
Sbjct: 40  KVVELKNLELAAVRGSDVRVKMLAAPINPSDIN----MIQGNYGLLPELPAVGGNEGVAQ 95

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +  VGS V  L+ GD V                             +    G+   + V 
Sbjct: 96  VVAVGSNVTGLKPGDWVI---------------------------PANAGLGTWRTEAVF 128

Query: 142 PAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAA 198
             +   ++P ++ L+  A     P +          + P  +V+    +  +G   +  A
Sbjct: 129 SEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIA 188

Query: 199 RAFGAPRIII--TDVDVQRLS-IARNLGADET 227
            A G   I +     D+Q+LS   ++LGA+  
Sbjct: 189 AALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 220

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 46/232 (19%), Positives = 75/232 (32%), Gaps = 47/232 (20%)

Query: 14  QNMAAWLLGI--KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
               A  +    +         P L    V VR++A+ I  SD                 
Sbjct: 10  PQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSM------RGQFATPW 63

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
             +G + AG +  VGS+V  ++VGDRV        G  +     +             P 
Sbjct: 64  AFLGTDYAGTVVAVGSDVTHIQVGDRV-------YGAQNEMCPRT-------------PD 103

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV---------------GVHACRRANV 176
            G+ +   V   ++  K+P  +S E+ A   P  +                  A +    
Sbjct: 104 QGAFSQYTVTRGRVWAKIPKGLSFEQAA-ALPAGISTAGLAMKLLGLPLPSPSADQPPTH 162

Query: 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
                V++ G S     VT+   R  G    I T        +A++ GA+E 
Sbjct: 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSRGAEEV 212

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 46/224 (20%)

Query: 13  NQNMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIV 68
           +  M A +L    G+  L++    +P     ++K+R+KA G+   D+     M     I 
Sbjct: 1   SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDL-----MVRQGNID 55

Query: 69  KKP---MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 125
             P   +V G EC+GI+E +G  VK  E+GDRV           +     ++        
Sbjct: 56  NPPKTPLVPGFECSGIVEALGDSVKGYEIGDRV----------MAFVNYNAW-------- 97

Query: 126 FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-VHAC--RRANVGPETNV 182
                     A  V  P +  YK+PD++S  E A   P++    +      AN+    +V
Sbjct: 98  ----------AEVVCTPVEFVYKIPDDMSFSEAA-AFPMNFVTAYVMLFEVANLREGMSV 146

Query: 183 MI-MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 225
           ++    G +G               +       +    ++    
Sbjct: 147 LVHSAGGGVGQAVAQLCSTVPN-VTVFGTASTFKHEAIKDSVTH 189

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 38/207 (18%)

Query: 26  LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPM--VIGHECAGIIE 83
           L+++  ++  L   +V VR+    I  SD+          +  + P+  + G+E  GI+E
Sbjct: 20  LQVEYKNIEPLKDNEVFVRMLVRPINPSDLI----PITGAYAHRIPLPNIPGYEGVGIVE 75

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
            VG+ V    +G RV            L   G++                     V   A
Sbjct: 76  NVGAFVSRELIGKRV----------LPLRGEGTW------------------QEYVKTSA 107

Query: 144 KLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA 200
                +PD++     A     PL+  V      N+     +++      IG +    ++ 
Sbjct: 108 DFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQI 167

Query: 201 FGAPRIIITDVDVQRLSIARNLGADET 227
               R+I    + +       LGA   
Sbjct: 168 LNF-RLIAVTRNNKHTEELLRLGAAYV 193

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 85.3 bits (212), Expect = 1e-19
 Identities = 60/220 (27%), Positives = 89/220 (40%), Gaps = 56/220 (25%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI-----------VKK 70
           G + L+   +     GPQ V VR KA+G+              NFI              
Sbjct: 12  GPEVLEYVDFEPEAPGPQAVVVRNKAIGL--------------NFIDTYYRSGLYPAPFL 57

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
           P  +G E AG++E VG EV   +VGDRVA                         +   P 
Sbjct: 58  PSGLGAEGAGVVEAVGDEVTRFKVGDRVA-------------------------YGTGPL 92

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 187
             G+ +   V P     KL D+VS E+ A  M + L+V     +   V P   ++    +
Sbjct: 93  --GAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAA 150

Query: 188 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           G +G +    A+A GA ++I T    ++ + A+ LGA ET
Sbjct: 151 GGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWET 189

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 85.3 bits (212), Expect = 1e-19
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 39/212 (18%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G   +K + Y +P++  +++ ++ K  G+   + +     R   +  +KP V+G E +G 
Sbjct: 19  GYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYF----RKGIYPCEKPYVLGREASGT 74

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
           +   G  V + EVGD+VA                ++                   +  + 
Sbjct: 75  VVAKGKGVTNFEVGDQVA-----------YISNSTFA-----------------QYSKIS 106

Query: 142 PAKLCYKLPDNVSLEE-----GAMCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTL 195
                 KLP   S EE       + + L+         +V     V++   +G +GL+  
Sbjct: 107 SQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILN 166

Query: 196 LAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              +  GA   I      ++L IA+  GA+  
Sbjct: 167 QLLKMKGA-HTIAVASTDEKLKIAKEYGAEYL 197

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 37/201 (18%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIEEVGSEVK 90
           +P  GP  V +++    I  SDV          +   +      G E  G I   G E  
Sbjct: 44  VPAPGPSQVLIKVNLASINPSDVA----FIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPY 99

Query: 91  S-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL 149
           +   VG RVA   G+S         GS+                  A   V  A  C  L
Sbjct: 100 AKSLVGKRVAFATGLSNW-------GSW------------------AEYAVAEAAACIPL 134

Query: 150 PDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRI 206
            D V  E+GA  +  PL+  +          E   ++   +  +  + +  A+  G  R 
Sbjct: 135 LDTVRDEDGAAMIVNPLTA-IAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGF-RP 192

Query: 207 IITDVDVQRLSIARNLGADET 227
           I+T    +++++ +++GA   
Sbjct: 193 IVTVRRDEQIALLKDIGAAHV 213

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 38/223 (17%)

Query: 14  QNMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHH--FKTMRCANFI 67
           + M A         K LK+     P      + +++ A  +   D               
Sbjct: 5   KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLK 64

Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 127
              P  +G++ +G + E+GS+V ++ +GD+V        G                   G
Sbjct: 65  NNLPSGLGYDFSGEVIELGSDVNNVNIGDKV-------MG-----------------IAG 100

Query: 128 SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HACRRANVGPETNVMI 184
            P      A  V        +  + +S  + A   P   G+    A  +A V     V+I
Sbjct: 101 FPDHPCCYAEYVCASPDTIIQKLEKLSFLQAA-SLPT-AGLTALQALNQAEVKQGDVVLI 158

Query: 185 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
              +G +G + +  A+  G   +I T    +  +  + LGA++
Sbjct: 159 HAGAGGVGHLAIQLAKQKGT-TVITT-ASKRNHAFLKALGAEQ 199

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 83.4 bits (207), Expect = 6e-19
 Identities = 48/225 (21%), Positives = 75/225 (33%), Gaps = 49/225 (21%)

Query: 15  NMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK 70
           +M A       G + L       P  GP  V V +KA G+C  D      +        K
Sbjct: 21  SMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDY-----LMTKGEYQLK 75

Query: 71  ---PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 127
              P V G E AG++     E   ++ GDRV           +    G Y          
Sbjct: 76  MEPPFVPGIETAGVVRSAP-EGSGIKPGDRV----------MAFNFIGGY---------- 114

Query: 128 SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-VHAC--RRANVGP-ETNVM 183
                   A +V          P  +   E       +   ++    RR  +   ET V+
Sbjct: 115 --------AERVAVAPSNILPTPPQLDDAEAV-ALIANYHTMYFAYARRGQLRAGET-VL 164

Query: 184 IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           ++G +G IG   +  A+  GA ++I            +++GAD  
Sbjct: 165 VLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIV 208

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 35/198 (17%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL 92
           +P L   D+ V+ +A+GI   D   +K ++          V G + AG+I +VG++V S 
Sbjct: 24  IPALAADDILVQNQAIGINPVD---WKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSK 80

Query: 93  EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN 152
            +G RVA                         +  S   +GS A   V        LPDN
Sbjct: 81  MLGRRVA-------------------------YHTSLKRHGSFAEFTVLNTDRVMTLPDN 115

Query: 153 VSLEEGAMCEPLSVGV---HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 209
           +S E  A   P    +    A  +  +  +  V+I+G G +  +        G   ++  
Sbjct: 116 LSFERAA-ALPC-PLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY--VVDL 171

Query: 210 DVDVQRLSIARNLGADET 227
                  ++A   G    
Sbjct: 172 VSASLSQALAAKRGVRHL 189

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 53/224 (23%), Positives = 77/224 (34%), Gaps = 42/224 (18%)

Query: 13  NQNMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIV 68
            Q M    L    G   + I    LP  G  +V VR +A+G+   D+      R  ++  
Sbjct: 26  PQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDI----AQRQGSYPP 81

Query: 69  KK--PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
            K    ++G E +G I  VG  V    VGD+V          C L   G+Y         
Sbjct: 82  PKDASPILGLELSGEIVGVGPGVSGYAVGDKV----------CGLANGGAY--------- 122

Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHA-CRRANVGPETNVMI 184
                    A   + PA      P      + A + E          + A +    +V+I
Sbjct: 123 ---------AEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLI 173

Query: 185 M-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
             G+  IG   +  ARAFGA  +  T     +      LGA   
Sbjct: 174 HGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRG 216

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 52/202 (25%), Positives = 72/202 (35%), Gaps = 41/202 (20%)

Query: 34  PTLGPQDVKVRIKALGICGSDVH----HFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV 89
           P   P  V V+I+A G    D           +        P ++G + AG +  VG EV
Sbjct: 28  PQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQP-----LPAILGMDLAGTVVAVGPEV 82

Query: 90  KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKL 149
            S  VGD V        G                   G     G+ A      A+L    
Sbjct: 83  DSFRVGDAV-------FG----------------LTGGVGGLQGTHAQFAAVDARLLASK 119

Query: 150 PDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAP 204
           P  +++ + +   PL V + A      RA V     V+I  G G +G V +  A A GA 
Sbjct: 120 PAALTMRQAS-VLPL-VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA- 176

Query: 205 RIIITDVDVQRLSIARNLGADE 226
           R+  T      L   R+LGA  
Sbjct: 177 RVFAT-ARGSDLEYVRDLGATP 197

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 36/232 (15%), Positives = 67/232 (28%), Gaps = 59/232 (25%)

Query: 25  TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHH--------------------------F 58
            L +     P  GP +V +RI+A  +  SD+                             
Sbjct: 19  ELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPE 78

Query: 59  KTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN 118
             MR     +   M +G+E AG++ E GS   +  +  +            +      Y 
Sbjct: 79  GAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT----------VAAIGGAMY- 127

Query: 119 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC--EPLSVGVHACRRANV 176
                            +     PA  C  LP+  +  +GA     PL+  +       +
Sbjct: 128 -----------------SQYRCIPADQCLVLPEGATPADGASSFVNPLTA-LGMVETMRL 169

Query: 177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
              + ++    +  +G +        G   + I     Q   + +  GA   
Sbjct: 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQA-DLLKAQGAVHV 220

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 35/231 (15%), Positives = 64/231 (27%), Gaps = 58/231 (25%)

Query: 25  TLKIQPYHLPTLGPQDVKVRIKALGICGSDVH-------HFKTMRCANFIVKKPMVIGHE 77
             +        L P +V V+     +  SD++                   +     G+E
Sbjct: 20  FTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNE 79

Query: 78  CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH 137
               + +VGS V SLE GD V                             S    G+   
Sbjct: 80  GLFEVIKVGSNVSSLEAGDWVI---------------------------PSHVNFGTWRT 112

Query: 138 KVVHPAKLCYKL-----------PDNVSLEEGAMCEPLSVGV----HAC-RRANVGPETN 181
             +       KL           P+ +++ +GA    +SV              + P  +
Sbjct: 113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGAT---ISVNPLTAYLMLTHYVKLTPGKD 169

Query: 182 VMIM--GSGPIGLVTLLAARAFGAPRIIIT---DVDVQRLSIARNLGADET 227
             I   G+  +G       +      I +        + ++  + LGA + 
Sbjct: 170 WFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQV 220

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 45/225 (20%)

Query: 14  QNMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVK 69
           Q+M A       G + L ++    P+ G  +V +++ A  +  +D+      R   +   
Sbjct: 21  QSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQ----RQGQYDPP 76

Query: 70  K--PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 126
                ++G E +G + E+G   +   ++GD             +L   G           
Sbjct: 77  PGASNILGLEASGHVAELGPGCQGHWKIGDTA----------MALLPGGGQ--------- 117

Query: 127 GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHAC--RRANVGPETNVM 183
                    A  V  P  L   +P+ ++L + A + E              NV     V+
Sbjct: 118 ---------AQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT-AFQLLHLVGNVQAGDYVL 167

Query: 184 IM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 227
           I  G   +G   +   R  GA   ++T    ++L +A  LGA   
Sbjct: 168 IHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAG 211

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 50/199 (25%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK--PMVIGHECAGIIEEVGSEVKS 91
           P     +V +R++A+G+  +D      MR   ++ +   P + G E  G++         
Sbjct: 21  PEAEEGEVVLRVEAVGLNFADHL----MRLGAYLTRLHPPFIPGMEVVGVV--------- 67

Query: 92  LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD 151
              G R            +L   G                    A +V  P      LP+
Sbjct: 68  --EGRRY----------AALVPQGGL------------------AERVAVPKGALLPLPE 97

Query: 152 NVSLEEGAMCEPLSVG--VHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIII 208
            +S EE A   P+S      A +RA   P   V++   +G +G   +  ARA G  R++ 
Sbjct: 98  GLSPEEAA-AFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLA 155

Query: 209 TDVDVQRLSIARNLGADET 227
                ++L++   LGA+E 
Sbjct: 156 AASRPEKLALPLALGAEEA 174

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 40/204 (19%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P     D+ V +KA+ +   D   +K  R          VIG++ AGI+  VG +V    
Sbjct: 48  PAPAGHDILVEVKAVSVNPVD---YKVRRSTPPDGTDWKVIGYDAAGIVSAVGPDVTLFR 104

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
            GD V                  +       + GS    G+ A   +   ++  + P  +
Sbjct: 105 PGDEV------------------F-------YAGSIIRPGTNAEFHLVDERIVGRKPKTL 139

Query: 154 SLEEGAMCEPLSVGVHA----CRRANVGPETNV------MIMGSGPIGLVTLLAARAFGA 203
              E A   PL   + A      R +V            ++ G+G +G + +  AR    
Sbjct: 140 DWAEAA-ALPL-TSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTD 197

Query: 204 PRIIITDVDVQRLSIARNLGADET 227
             +I T    +     ++LGA   
Sbjct: 198 LTVIATASRPETQEWVKSLGAHHV 221

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 60/240 (25%)

Query: 16  MAAWLL----GIKTLKI-QPYHLPTLG-PQDVKVRIKALGICGSDVH------------H 57
             AW++      + L+  Q   +P +  P +V V++ A  +   DV+             
Sbjct: 22  SMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 81

Query: 58  FKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 117
              +       + P+ +G + +G++ E G +VK  + GD V                   
Sbjct: 82  RDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV------------------- 122

Query: 118 NLCPEMRFFGSPPT--NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV------- 168
                   + + P    G+L+  VV         P +++  + A   P  V +       
Sbjct: 123 --------WAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAA-SLPY-VALTAWSAIN 172

Query: 169 -HACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 226
                         V+I+G SG +G   +   +A+ A   +          + R LGAD+
Sbjct: 173 KVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA--HVTAVCSQDASELVRKLGADD 230

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 48/183 (26%)

Query: 29  QPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE 88
           +P     LG  +V++ ++A G+   D         A  +      +G E AG++ E G  
Sbjct: 229 EPTATAPLGDGEVRIAMRAAGVNFRDALI------ALGMYPGVASLGSEGAGVVVETGPG 282

Query: 89  VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYK 148
           V  L  GDRV        G                          +     V   ++  +
Sbjct: 283 VTGLAPGDRV-------MGMIP----------------------KAFGPLAVADHRMVTR 313

Query: 149 LPDNVSLEEGAMCEPLSVGV------HA-CRRANVGPETNVMI-MGSGPIGLVTLLAARA 200
           +P   S    A     SV +      +A    A + P  ++++   +G +G+  +  AR 
Sbjct: 314 IPAGWSFARAA-----SVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARH 368

Query: 201 FGA 203
            GA
Sbjct: 369 LGA 371

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 46/206 (22%)

Query: 34  PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE 93
           P     ++ V+I+++ +   D     T +    + K P V+G +  G++E VG+EV    
Sbjct: 28  PEPKVHEILVKIQSISVNPVD-----TKQRLMDVSKAPRVLGFDAIGVVESVGNEVTMFN 82

Query: 94  VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV 153
            GD V                  Y       + GSP  NGS A   +   +L  K P N+
Sbjct: 83  QGDIV------------------Y-------YSGSPDQNGSNAEYQLINERLVAKAPKNI 117

Query: 154 SLEE-GAMCEPLSVGVHA----CRRANVGPETNV-------MIMGSGPIGLVTLLAARAF 201
           S E+  ++  PL  G+ A         +    N        +I G+G +G +    A+A+
Sbjct: 118 SAEQAVSL--PL-TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY 174

Query: 202 GAPRIIITDVDVQRLSIARNLGADET 227
           G  R+I T    + +   + +GAD  
Sbjct: 175 GL-RVITTASRNETIEWTKKMGADIV 199

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 42/201 (20%)

Query: 33  LPTLGPQDVKVRIKALGICGSDVHHFKTMR-CANFIVKKPMVIGHECAGIIEEVGSEVKS 91
           +P  G  D+ VR + +G+  SD+++        +  VK P  IG E  G +  +G    +
Sbjct: 48  VPLPGDGDLLVRNRFVGVNASDINY---SAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 104

Query: 92  -LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLP 150
              VG  VA                                 GS A   V PA +   +P
Sbjct: 105 RYTVGQAVAYMAP-----------------------------GSFAEYTVVPASIATPVP 135

Query: 151 DNVSLEEGAMCEPL---SVGVHACRRANVGP-ETNVMIMGSGPIGLVTLLAARAFGAPRI 206
                E   +        + +       +   +  ++   +G  G   +  ++      +
Sbjct: 136 SVKP-EYLTLLVSGTTAYISLK--ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HV 191

Query: 207 IITDVDVQRLSIARNLGADET 227
           I T    ++ +  ++LG D  
Sbjct: 192 IGTCSSDEKSAFLKSLGCDRP 212

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 29/204 (14%), Positives = 56/204 (27%), Gaps = 56/204 (27%)

Query: 17   AAWLLGIKT------LKIQPY---HLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
                + + +      ++       +      QD    +    +      +F+ +  A   
Sbjct: 1529 EHAFVNVLSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSL------NFRDVMLATGK 1582

Query: 68   VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 127
            +    + G                   G RV                        M    
Sbjct: 1583 LSPDSIPGKWLTRDCMLGMEFSGRDASGRRV------------------------MGMV- 1617

Query: 128  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV------HA-CRRANVGPET 180
                   LA  V+      +++P   +LEE A     SV +      ++   R  + P  
Sbjct: 1618 ---PAEGLATSVLLLQHATWEVPSTWTLEEAA-----SVPIVYTTAYYSLVVRGRMQPGE 1669

Query: 181  NVMI-MGSGPIGLVTLLAARAFGA 203
            +V+I  GSG +G   +  A + G 
Sbjct: 1670 SVLIHSGSGGVGQAAIAIALSRGC 1693

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.87
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.57
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.43
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.31
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.26
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.16
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.08
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.0
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.96
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.9
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.68
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.68
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.56
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.55
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.32
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.07
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.92
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.88
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.87
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.86
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.85
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.6
2b25_A	336	Hypothetical protein; structural genomics, methyl	95.54
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.54
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.52
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.51
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.48
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.45
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.41
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.41
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.39
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.38
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.3
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.28
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.26
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.23
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.18
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	95.12
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.08
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	95.08
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	95.08
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.07
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.03
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.03
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.02
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.0
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	94.98
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	94.98
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.98
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.96
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	94.96
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.91
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	94.91
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.9
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.89
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.88
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.88
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.87
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.85
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.85
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	94.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.82
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.82
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	94.81
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.8
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.79
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.78
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.78
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.78
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	94.72
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.71
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.71
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.7
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.7
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	94.68
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.65
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	94.64
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.64
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.64
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.63
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.63
1xkq_A	280	Short-chain reductase family member (5D234); parra	94.6
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.57
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.56
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.56
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.56
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.56
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.55
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	94.55
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.53
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.53
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.5
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.5
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.5
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.49
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.48
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.47
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.47
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.46
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.42
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.38
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.37
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.36
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	94.36
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	94.3
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.27
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.26
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.26
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.23
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.22
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.22
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.21
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	94.19
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.19
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.18
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.13
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.11
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.09
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.06
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.06
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.06
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.03
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.03
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	94.03
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	94.02
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.99
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.99
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	93.99
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.98
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	93.96
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	93.96
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.94
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.91
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.9
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.88
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.81
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.8
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.77
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.76
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.75
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.75
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.72
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.69
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.69
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	93.65
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	93.62
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.62
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.62
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.61
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.6
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.58
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.53
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.49
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.48
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.47
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	93.46
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.45
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.41
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.41
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	93.39
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.36
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.36
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.36
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.35
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.35
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	93.34
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	93.33
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.31
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	93.27
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.26
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.25
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	93.24
1spx_A	278	Short-chain reductase family member (5L265); paral	93.23
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.21
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	93.2
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.18
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.16
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.13
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.1
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	93.08
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.06
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.05
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.02
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.01
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.99
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	92.97
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.96
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.93
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.92
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.9
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.86
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.81
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	92.76
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.74
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	92.74
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	92.66
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.56
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.54
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	92.54
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	92.52
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	92.51
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.5
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.49
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.49
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	92.48
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	92.47
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.42
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.35
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.33
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	92.31
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	92.28
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	92.26
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	92.26
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.24
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.23
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	92.23
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.22
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	92.18
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.15
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	92.12
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.11
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	92.09
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	92.07
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	92.07
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.04
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.03
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	92.02
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	92.02
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	92.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.96
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	91.95
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	91.93
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	91.92
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	91.92
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	91.89
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	91.89
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	91.88
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	91.87
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.86
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	91.86
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	91.8
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	91.79
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.69
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	91.63
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	91.52
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	91.52
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.49
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	91.48
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.42
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	91.41
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.4
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	91.34
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.26
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.24
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	91.23
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	91.21
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	91.19
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	91.16
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	91.13
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.12
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.12
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.12
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	91.11
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	91.09
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	91.05
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.02
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.02
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	91.02
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	90.93
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.9
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.89
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	90.88
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	90.87
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	90.85
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	90.85
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	90.85
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.78
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.73
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	90.72
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.69
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	90.64
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	90.63
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.63
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	90.6
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.56
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	90.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.51
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	90.41
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.4
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.38
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	90.33
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	90.31
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	90.29
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	90.27
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	90.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.24
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	90.17
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.16
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.13
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.11
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	90.04
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	90.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	89.97
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	89.96
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	89.9
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	89.88
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	89.86
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	89.84
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	89.82
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	89.78
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	89.77
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	89.71
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	89.7
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	89.66
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.55
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.54
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	89.5
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	89.49
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	89.47
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	89.41
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.4
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	89.36
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	89.34
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.33
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.29
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	89.28
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	89.28
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	89.26
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	89.25
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.24
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.15
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	89.1
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	89.09
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.09
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.04
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	89.0
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	88.99
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.89
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.84
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	88.76
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	88.75
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	88.72
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	88.71
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	88.7
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	88.65
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	88.56
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	88.54
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.53
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.52
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	88.47
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	88.45
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.45
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	88.42
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	88.41
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	88.4
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	88.34
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	88.34
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	88.26
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	88.25
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	88.24
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	88.07
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	88.05
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	88.0
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	87.96
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	87.93
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.93
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	87.87
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	87.84
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	87.76
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	87.63
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.6
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	87.57
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.56
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.52
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	87.44
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	87.39
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	87.37
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	87.21
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	87.19
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	87.13
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	87.05
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	86.91
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	86.85
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	86.85
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	86.84
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	86.82
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	86.82
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	86.81
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	86.81
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	86.74
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	86.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	86.69
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	86.64
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	86.6
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	86.55
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	86.37
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	86.3
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	86.3
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	86.28
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	86.26
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	86.25
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	86.24
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	86.21
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	86.17
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	86.09
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	86.06
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	86.05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	85.88
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	85.74
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	85.7
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	85.62
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	85.59
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	85.59
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	85.54
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	85.46
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	85.42
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	85.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.37

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-45  Score=321.48  Aligned_cols=234  Identities=48%  Similarity=0.846  Sum_probs=208.0

Q ss_pred             CcccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           11 DKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      |+++||++++.+++.+++++.|.|+|+++||||||++++||++|+..+.+.........+|.++|||++|+|+++|++++
T Consensus         1 m~~~mka~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            1 MASDNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             ---CCEEEEEEETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             CcccCEEEEEEcCCcEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            34568999999999999999999999999999999999999999998875332222245799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA  170 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~  170 (249)
                      +|++||+|++.+...|++|.+|+.+++++|.+..+.+.....|+|+||+.++.++++++|+++++++|+++.++.+||++
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~a  160 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHA  160 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTHHHHHHHHHH
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhhchHHHHHHH
Confidence            99999999999999999999999999999998877665446799999999999999999999999999987788899999


Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++ .+++.+++++.+.
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~i~~~~~  234 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSIIERIR  234 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT-TTSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcc-cccHHHHHHHHhc
Confidence            988999999999999999999999999999999 6999999999999999999999998773 1567777777664

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.8e-45  Score=322.30  Aligned_cols=233  Identities=47%  Similarity=0.834  Sum_probs=209.2

Q ss_pred             ccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           13 NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      ++||++++.+++.+++++.|.|+|+++||||||.+++||++|+.++.+...+.....+|.++|||++|+|+++|+++++|
T Consensus         6 ~~mka~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~~   85 (356)
T 1pl8_A            6 PNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (356)
T ss_dssp             CCCEEEEEEETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             cCceEEEEecCCcEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCCC
Confidence            45899999999999999999999999999999999999999999887543222224579999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR  172 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~  172 (249)
                      ++||+|++.+...|++|.+|+.|++++|.+..+.+.....|+|+||+.++.++++++|+++++++|+++.++.+||++++
T Consensus        86 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~~~~~ta~~al~  165 (356)
T 1pl8_A           86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACR  165 (356)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhhchHHHHHHHHH
Confidence            99999999999999999999999999999877766544579999999999999999999999999998778889999998


Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCC-cccHHHHHHHHH
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEMWGRYKMQWV  245 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~-~~~~~~~~~~~~  245 (249)
                      ..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++|++.. .+++.+.+++.+
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence            8999999999999999999999999999999789999999999999999999999988731 257777777765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.1e-45  Score=324.19  Aligned_cols=234  Identities=38%  Similarity=0.611  Sum_probs=212.3

Q ss_pred             CcccceEEEEecCCCeEEEEecCC--------CCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEE
Q 025712           11 DKNQNMAAWLLGIKTLKIQPYHLP--------TLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGII   82 (249)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~p--------~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V   82 (249)
                      ++++|+++++.+++.++++++|.|        +|+++||||||++++||++|+.++.+...+.....+|.++|||++|+|
T Consensus         5 ~~~~mka~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V   84 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEV   84 (363)
T ss_dssp             CCSCCEEEEECTTCCEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEE
T ss_pred             CcccceeEEEeCCCcEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEE
Confidence            346789999999999999999999        999999999999999999999988865444444578999999999999


Q ss_pred             EEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc
Q 025712           83 EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE  162 (249)
Q Consensus        83 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~  162 (249)
                      +++|+++++|++||+|++.+...|++|.+|+.|++++|.+..+.+.....|+|+||+.++.+.++++|+ +++++|+++.
T Consensus        85 ~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~  163 (363)
T 3m6i_A           85 IAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE  163 (363)
T ss_dssp             EEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH
T ss_pred             EEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhh
Confidence            999999999999999999999999999999999999999988887666789999999999999999999 9999999888


Q ss_pred             chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC---CcccHHH
Q 025712          163 PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST---DIEMWGR  239 (249)
Q Consensus       163 ~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~---~~~~~~~  239 (249)
                      ++.+||++++.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|+++++++ ++++++++.   +.+++.+
T Consensus       164 ~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~  242 (363)
T 3m6i_A          164 PLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAK  242 (363)
T ss_dssp             HHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHH
Confidence            888999999889999999999999999999999999999996699999999999999999 777766542   2468888


Q ss_pred             HHHHHHH
Q 025712          240 YKMQWVQ  246 (249)
Q Consensus       240 ~~~~~~~  246 (249)
                      .++++++
T Consensus       243 ~v~~~t~  249 (363)
T 3m6i_A          243 KIVESFG  249 (363)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhC
Confidence            8888763

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2e-45  Score=323.57  Aligned_cols=227  Identities=31%  Similarity=0.564  Sum_probs=209.5

Q ss_pred             CCcccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           10 GDKNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      .++++||++++.+++.++++++|.|+|+++||||||.+++||++|+..+.|.+    +..+|.++|||++|+|+++|+++
T Consensus        19 ~~p~~mkA~v~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~----~~~~p~v~G~e~~G~V~~vG~~v   94 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEF----PSTPPVTLGHEFCGIVVEAGSAV   94 (370)
T ss_dssp             --CCEEEEEEEEETTEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSEECCCSEEEEEEEECTTC
T ss_pred             ccchheEEEEEecCCceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCC----CCCCCeecCcceEEEEEEECCCC
Confidence            34567899999999999999999999999999999999999999999988753    35779999999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH  169 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~  169 (249)
                      ++|++||+|++.+...|+.|.+|+.+.+++|.+....|. ...|+|+||+.++.+.++++|+++++++|++..++.++|+
T Consensus        95 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aal~~~~~ta~~  173 (370)
T 4ej6_A           95 RDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGI-HRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH  173 (370)
T ss_dssp             CSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEEECTTSCTTGGGGHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCC-CCCCcceEEEEEchhhEEECCCCCCHHHHhhhhHHHHHHH
Confidence            999999999999999999999999999999999877765 3689999999999999999999999999997778999999


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +++.+++++|++|||+|+|++|++++|+|+++|+.+|++++++++++++++++|+++++|+++  +++.+.+++
T Consensus       174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~i~~  245 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA--GDVVEAIAG  245 (370)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS--SCHHHHHHS
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC--cCHHHHHHh
Confidence            998899999999999999999999999999999988999999999999999999999999876  678777765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.6e-44  Score=314.79  Aligned_cols=225  Identities=31%  Similarity=0.524  Sum_probs=207.2

Q ss_pred             ceEEEEecCCCeEEEEecCCC-CCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++.++++|.|.|+ +++|||||||+|++||++|++.+.+..    ...+|+++|||++|+|+++|+++++++
T Consensus         1 MkAvv~~~~g~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~----~~~~P~i~G~E~~G~V~~vG~~V~~~~   76 (346)
T 4a2c_A            1 MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNG----AHYYPITLGHEFSGYIDAVGSGVDDLH   76 (346)
T ss_dssp             CEEEEECSSSCEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSC----SSSSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CCEEEEecCCCEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCC----CCCCCccccEEEEEEEEEECCCccccc
Confidence            789999999999999999998 579999999999999999998887643    356899999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR  173 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~  173 (249)
                      +||+|.+.+...|++|.+|+.+++++|.+....+. ..+|+|+||+.++.++++++|+++++++|+++.++++++++++.
T Consensus        77 ~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~~~~~~~~  155 (346)
T 4a2c_A           77 PGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGS-RRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHL  155 (346)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHHHHHHHHHHHH
T ss_pred             CCCeEEeeeccCCCCcccccCCccccCCCcccccC-CCCcccccccccchheEEECCCCCCHHHHHhchHHHHHHHHHHH
Confidence            99999999999999999999999999998877764 47899999999999999999999999999998888888888899


Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      .+.++|++|||+|+|++|++++|+++++|+..+++++++++|+++++++|+++++|+++  .++.+.++++++
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--~~~~~~~~~~~~  226 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSVLRE  226 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHGG
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC--CCHHHHHHhhcc
Confidence            99999999999999999999999999999988899999999999999999999999887  677777766654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=4.4e-45  Score=318.80  Aligned_cols=231  Identities=30%  Similarity=0.539  Sum_probs=195.6

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      |++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.........+|.++|||++|+|+++|++++
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            4568899999888 899999999999999999999999999999998887211101146799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA  170 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~  170 (249)
                      +|++||+|++.+...|++|.+|+.|++++|.+....|. ...|+|+||+.++.+.++++|+++++++|+++.++.+||++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~  160 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDT  160 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHHHHHHHHHH
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecC-CCCCcCcceEEeChHHeEECCCCCCHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999998776653 46799999999999999999999999999988888899999


Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++..++ +|++|||+|+|++|++++|+++.+|+.+|++++++++++++++++|+++++|+++  +++.+.++++++
T Consensus       161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~~~~  233 (348)
T 2d8a_A          161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVMDITD  233 (348)
T ss_dssp             HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT--SCHHHHHHHHTT
T ss_pred             HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC--cCHHHHHHHHcC
Confidence            988888 9999999999999999999999999967999999999999999999999998876  688888887653

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=5.6e-45  Score=321.55  Aligned_cols=234  Identities=25%  Similarity=0.381  Sum_probs=208.5

Q ss_pred             CCcccceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           10 GDKNQNMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        10 ~~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      .++++||++++.+++. ++++++|.|+|+++||||||++++||++|+..+.|.+.   ...+|.++|||++|+|+++|++
T Consensus         4 ~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~   80 (378)
T 3uko_A            4 GQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG   80 (378)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEECTT
T ss_pred             ccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCC---CCCCCccCCccceEEEEEeCCC
Confidence            3556789999998875 99999999999999999999999999999999987632   2468999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC------------------CCCCCceeEEEEecCCceE
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS------------------PPTNGSLAHKVVHPAKLCY  147 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------~~~~g~~~~~~~~~~~~~~  147 (249)
                      +++|++||+|++.+...|++|.+|+.+++++|.+....   |.                  ....|+|+||+.++.+.++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  160 (378)
T 3uko_A           81 VTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVA  160 (378)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEE
T ss_pred             CCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheE
Confidence            99999999999999999999999999999999976431   10                  1123799999999999999


Q ss_pred             ECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          148 KLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       148 ~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      ++|+++++++|++++ .+.+||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++.+++|+++++++|++
T Consensus       161 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~  240 (378)
T 3uko_A          161 KIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN  240 (378)
T ss_dssp             ECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC
T ss_pred             ECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            999999999999887 578999987 668999999999999999999999999999997899999999999999999999


Q ss_pred             EEecCCCCcccHHHHHHHHHH
Q 025712          226 ETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       226 ~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +++|+++.++++.+.++++++
T Consensus       241 ~vi~~~~~~~~~~~~i~~~~~  261 (378)
T 3uko_A          241 EFVNPKDHDKPIQEVIVDLTD  261 (378)
T ss_dssp             EEECGGGCSSCHHHHHHHHTT
T ss_pred             EEEccccCchhHHHHHHHhcC
Confidence            999988545789998888764

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.1e-44  Score=311.78  Aligned_cols=230  Identities=30%  Similarity=0.454  Sum_probs=201.3

Q ss_pred             cccceEEEEecCC-CeEEEEecCCC-CCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPT-LGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      +++||++++.+++ .++++++|.|+ |+++||||||++++||++|+..+.|.+.......+|.++|||++|+|+++|+++
T Consensus        13 ~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   92 (359)
T 1h2b_A           13 VERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGV   92 (359)
T ss_dssp             ----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTC
T ss_pred             hhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCC
Confidence            4568889998885 79999999999 999999999999999999999988753210123679999999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhc---ccc-chH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA---MCE-PLS  165 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa---~~~-~~~  165 (249)
                      ++|++||+|+.++...|++|.+|+.+++++|.+....|. ...|+|+||+.++.++++++|+++++++|+   .+. ...
T Consensus        93 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~  171 (359)
T 1h2b_A           93 EGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGI  171 (359)
T ss_dssp             CSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTT-TBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHH
T ss_pred             CCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCcccccc-CCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHH
Confidence            999999999988888999999999999999998765553 467999999999999999999999999998   344 356


Q ss_pred             HHHHHHHH--cCCCCCCeEEEEcCChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          166 VGVHACRR--ANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       166 ~a~~~l~~--~~~~~g~~vlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      +||++++.  .++++|++|||+|+|++|++++|+|+++ |+ +|++++++++|+++++++|+++++|+++  + +.+.++
T Consensus       172 ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~-~~~~v~  247 (359)
T 1h2b_A          172 TAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR--D-PVKQVM  247 (359)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C-HHHHHH
T ss_pred             HHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc--h-HHHHHH
Confidence            89999977  8999999999999999999999999999 99 8999999999999999999999999876  4 888887


Q ss_pred             HHHH
Q 025712          243 QWVQ  246 (249)
Q Consensus       243 ~~~~  246 (249)
                      ++++
T Consensus       248 ~~~~  251 (359)
T 1h2b_A          248 ELTR  251 (359)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            7763

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.8e-43  Score=311.33  Aligned_cols=230  Identities=24%  Similarity=0.373  Sum_probs=203.0

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+.    ..+|.++|||++|+|+++|++++
T Consensus         7 p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A            7 DITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             CEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             cceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC----CCCCcccCcCceEEEEEECCCCC
Confidence            4568899998886 699999999999999999999999999999998887532    45799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECC
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLP  150 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip  150 (249)
                      +|++||+|++.+...|++|.+|+.+++++|.+....   |.                 ....|+|+||+.+++++++++|
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  162 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  162 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECC
Confidence            999999999999999999999999999999875431   10                 0135999999999999999999


Q ss_pred             CCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          151 DNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       151 ~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      ++++++ |++++ ++.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++
T Consensus       163 ~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi  241 (373)
T 1p0f_A          163 PKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL  241 (373)
T ss_dssp             TTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE
Confidence            999999 88776 578999887 568899999999999999999999999999997799999999999999999999999


Q ss_pred             cCCCCcccHHHHHHHHHH
Q 025712          229 KVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~  246 (249)
                      |+++.++++.+.++++++
T Consensus       242 ~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          242 NPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CGGGCSSCHHHHHHHHTT
T ss_pred             ecccccchHHHHHHHHhC
Confidence            887433578888887653

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.9e-43  Score=308.16  Aligned_cols=232  Identities=23%  Similarity=0.365  Sum_probs=204.2

Q ss_pred             CcccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHh-hHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           11 DKNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVH-HFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        11 ~~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~-~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      .+++||++++.+++ .++++++|.|+|+++||||||++++||++|+. .+.|.+.    ..+|.++|||++|+|+++|++
T Consensus         5 ~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK----DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             SCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT----TSCSEECCCCEEEEEEEECTT
T ss_pred             CcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC----CCCCcccCccceEEEEEECCC
Confidence            34568899998876 69999999999999999999999999999998 7776432    467999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC----C-------------CCCCceeEEEEecCCceEE
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS----P-------------PTNGSLAHKVVHPAKLCYK  148 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~-------------~~~g~~~~~~~~~~~~~~~  148 (249)
                      +++|++||+|++.+...|++|.+|+.+++++|.+.+..   |.    .             ...|+|+||+.++++++++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~  160 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEE
Confidence            99999999999999999999999999999999875432   11    0             0249999999999999999


Q ss_pred             CCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          149 LPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       149 ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +|+++++++|++++ ++.+||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++
T Consensus       161 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  240 (374)
T 1cdo_A          161 IDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD  240 (374)
T ss_dssp             CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred             CCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCce
Confidence            99999999999887 578999887 5688999999999999999999999999999977999999999999999999999


Q ss_pred             EecCCCCcccHHHHHHHHHH
Q 025712          227 TAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       227 vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++|+++.++++.+.++++++
T Consensus       241 vi~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          241 FVNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             EECGGGCSSCHHHHHHHHHT
T ss_pred             EEeccccchhHHHHHHHHhC
Confidence            99887433578888887764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=4.6e-43  Score=305.08  Aligned_cols=224  Identities=29%  Similarity=0.409  Sum_probs=202.7

Q ss_pred             cceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           14 QNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        14 ~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      .||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+..  ...+|.++|||++|+|+++|+++++|
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~G~E~~G~V~~vG~~v~~~   79 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPV--KPTLPFIPGHEGVGYVSAVGSGVSRV   79 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSEEEEEEEEECSSCCSC
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCC--CCCCCcccCCcceEEEEEECCCCCcC
Confidence            37788888764 6999999999999999999999999999999999886421  24689999999999999999999999


Q ss_pred             CCCCeEE-EccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           93 EVGDRVA-LEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        93 ~~Gd~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      ++||+|+ .++...|+.|.+|+.+++++|.+....+. ..+|+|+||+.++++.++++|+++++++|+.+. .+.+||++
T Consensus        80 ~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  158 (340)
T 3s2e_A           80 KEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGY-SVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKG  158 (340)
T ss_dssp             CTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCCCChHHhCcCcccCccccccCC-CCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHH
Confidence            9999994 56778999999999999999998776654 467999999999999999999999999999766 57799999


Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      ++..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+++  +++.+.+++
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~~~~~~~~  228 (340)
T 3s2e_A          159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD--TDPAAWLQK  228 (340)
T ss_dssp             HHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHHH
Confidence            988999999999999999999999999999999 8999999999999999999999999876  778888776

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=5.3e-43  Score=308.64  Aligned_cols=231  Identities=25%  Similarity=0.355  Sum_probs=203.6

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.    ....+|.++|||++|+|+++|++++
T Consensus         6 p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            6 VIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK----KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT----SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             ChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC----CCCCCCcccCccccEEEEEECCCCc
Confidence            4568999998886 6999999999999999999999999999999988764    1246799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCcc----c---cCCC-----------------CCCCceeEEEEecCCce
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR----F---FGSP-----------------PTNGSLAHKVVHPAKLC  146 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~-----------------~~~g~~~~~~~~~~~~~  146 (249)
                      +|++||+|++.+...|++|.+|+.+++++|....    +   .|..                 ...|+|+||+.++++.+
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccE
Confidence            9999999999999999999999999999998754    1   0110                 12499999999999999


Q ss_pred             EECCCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          147 YKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       147 ~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +++|+++++++|++++ ++.+||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  241 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA  241 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            9999999999999887 578999887 56899999999999999999999999999999779999999999999999999


Q ss_pred             CEEecCCCCcccHHHHHHHHHH
Q 025712          225 DETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       225 ~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++++|+++.++++.+.++++++
T Consensus       242 ~~vi~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          242 TDCLNPRELDKPVQDVITELTA  263 (376)
T ss_dssp             SEEECGGGCSSCHHHHHHHHHT
T ss_pred             cEEEccccccchHHHHHHHHhC
Confidence            9999887433578888887764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-43  Score=311.75  Aligned_cols=233  Identities=28%  Similarity=0.450  Sum_probs=207.6

Q ss_pred             CCcccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           10 GDKNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        10 ~~~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ||.-+||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+.   ...+|.++|||++|+|+++| +
T Consensus        13 ~~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~~P~v~GhE~~G~V~~vG-~   88 (380)
T 1vj0_A           13 MMGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVN-G   88 (380)
T ss_dssp             -CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEES-S
T ss_pred             HhhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCC---CCCCCcccCcCcEEEEEEeC-C
Confidence            455678999999988 899999999999999999999999999999999887432   13679999999999999999 9


Q ss_pred             CC------CCCCCCeEEEccCcCCCCCcccc-CCCCCCCcCccccCCC-------CCCCceeEEEEe-cCCceEECCCCC
Q 025712           89 VK------SLEVGDRVALEPGISCGHCSLCK-AGSYNLCPEMRFFGSP-------PTNGSLAHKVVH-PAKLCYKLPDNV  153 (249)
Q Consensus        89 v~------~~~~Gd~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~-~~~~~~~ip~~~  153 (249)
                      ++      +|++||+|++.+...|++|.+|+ .+.+++|.+..+.+..       ...|+|+||+.+ +.+.++++|+++
T Consensus        89 V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l  168 (380)
T 1vj0_A           89 EKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKD  168 (380)
T ss_dssp             CCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTS
T ss_pred             ccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCC
Confidence            99      99999999999999999999999 9999999987665521       347999999999 999999999999


Q ss_pred             Chh-hhccccchHHHHHHHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLE-EGAMCEPLSVGVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~-~aa~~~~~~~a~~~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++ +|+++.++.+||++++..+ +++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++++|++
T Consensus       169 ~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  248 (380)
T 1vj0_A          169 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR  248 (380)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             ChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEecc
Confidence            999 8888888999999998888 99999999999999999999999999954899999999999999999999999876


Q ss_pred             C-CcccHHHHHHHHHH
Q 025712          232 T-DIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~-~~~~~~~~~~~~~~  246 (249)
                      . +++++.++++++++
T Consensus       249 ~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          249 ETSVEERRKAIMDITH  264 (380)
T ss_dssp             TSCHHHHHHHHHHHTT
T ss_pred             ccCcchHHHHHHHHhC
Confidence            1 13688888887764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=7.4e-43  Score=307.52  Aligned_cols=230  Identities=25%  Similarity=0.384  Sum_probs=203.0

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+.    ..+|.++|||++|+|+++|++++
T Consensus         6 ~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            6 VIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV----TPLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC----CCSSBCCCCSEEEEEEEECTTCC
T ss_pred             ceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCC----CCCCcccCcCceEEEEEECCCCC
Confidence            3568899998886 699999999999999999999999999999998887532    23799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECC
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLP  150 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip  150 (249)
                      +|++||+|++.+...|++|.+|+.+++++|.+....   +.                 ....|+|+||+.++++.++++|
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence            999999999999999999999999999999875432   11                 0135999999999999999999


Q ss_pred             CCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          151 DNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       151 ~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      +++++++|++++ .+.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++++
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  241 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV  241 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe
Confidence            999999999887 578999887 568899999999999999999999999999997799999999999999999999999


Q ss_pred             cCCCCcccHHHHHHHHH
Q 025712          229 KVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       229 ~~~~~~~~~~~~~~~~~  245 (249)
                      |+++..+++.+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~~~  258 (374)
T 2jhf_A          242 NPQDYKKPIQEVLTEMS  258 (374)
T ss_dssp             CGGGCSSCHHHHHHHHT
T ss_pred             cccccchhHHHHHHHHh
Confidence            88743357888887765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=2.8e-43  Score=307.87  Aligned_cols=226  Identities=26%  Similarity=0.313  Sum_probs=203.8

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHh-hHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVH-HFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~-~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++.++++|+|.|+|+++||||||++++||++|+. +..|.+    +..+|.++|||++|+|+++|+++++|+
T Consensus         1 MkA~~~~~~~~~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~----~~~~p~v~G~E~~G~V~~vG~~v~~~~   76 (352)
T 3fpc_A            1 MKGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAI----GERHNMILGHEAVGEVVEVGSEVKDFK   76 (352)
T ss_dssp             CEEEEEEETTEEEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTT----CCCSSEECCCEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEccCCCceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCC----CCCCCcccCCcceEEEEEECCCCCcCC
Confidence            789999999999999999999999999999999999999998 445543    246799999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccc--cCCCCCCCceeEEEEecCC--ceEECCCCCChhhhcccc-chHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGV  168 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~-~~~~a~  168 (249)
                      +||+|++.+...|+.|.+|+.+++.+|.....  .-+....|+|+||+.++..  .++++|+++++++|++++ ++.+||
T Consensus        77 vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~  156 (352)
T 3fpc_A           77 PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGF  156 (352)
T ss_dssp             TTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHH
T ss_pred             CCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHH
Confidence            99999999999999999999999988876432  1123467999999999976  899999999999999875 688999


Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++++..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++|+++  +++.+.++++|+
T Consensus       157 ~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~t~  232 (352)
T 3fpc_A          157 HGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN--GDIVEQILKATD  232 (352)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG--SCHHHHHHHHTT
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC--cCHHHHHHHHcC
Confidence            9999999999999999999999999999999999977999999999999999999999998876  789999988775

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.2e-43  Score=309.57  Aligned_cols=227  Identities=28%  Similarity=0.406  Sum_probs=202.0

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+    +..+|.++|||++|+|+++|+++++
T Consensus         5 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~----~~~~P~v~GhE~~G~V~~vG~~v~~   80 (371)
T 1f8f_A            5 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY----PVPLPAVLGHEGSGIIEAIGPNVTE   80 (371)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             ccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCC----CCCCCcccCcccceEEEEeCCCCCC
Confidence            358888888876 69999999999999999999999999999999988753    2457999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccC----------------C------CCCCCceeEEEEecCCceEEC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG----------------S------PPTNGSLAHKVVHPAKLCYKL  149 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~------~~~~g~~~~~~~~~~~~~~~i  149 (249)
                      |++||+|++.+ ..|++|.+|+.+++++|.+....+                +      ....|+|+||+.++.+.++++
T Consensus        81 ~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~i  159 (371)
T 1f8f_A           81 LQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  159 (371)
T ss_dssp             CCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             CCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEEC
Confidence            99999999999 999999999999999998754210                0      013599999999999999999


Q ss_pred             CCCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          150 PDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       150 p~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      |+++++++|+++. ++.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++
T Consensus       160 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  239 (371)
T 1f8f_A          160 TKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV  239 (371)
T ss_dssp             CTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEE
Confidence            9999999998877 788999998 67899999999999999999999999999999779999999999999999999999


Q ss_pred             ecCCCCcccHHHHHHHHHH
Q 025712          228 AKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       228 i~~~~~~~~~~~~~~~~~~  246 (249)
                      +|+++  +++.+.++++++
T Consensus       240 i~~~~--~~~~~~~~~~~~  256 (371)
T 1f8f_A          240 INSKT--QDPVAAIKEITD  256 (371)
T ss_dssp             EETTT--SCHHHHHHHHTT
T ss_pred             ecCCc--cCHHHHHHHhcC
Confidence            99876  688888877653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.1e-43  Score=307.69  Aligned_cols=226  Identities=33%  Similarity=0.566  Sum_probs=203.7

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++. ++++++|.|+|+++||||||++++||++|+.++.|.+.......+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            57888888877 99999999999999999999999999999999887532101246799999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH-
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR-  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~-  172 (249)
                      +||+|++.+...|++|.+|+.|++++|.+....|. ...|+|+||+.++.+.++++|+++++++|+++.++++||++++ 
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~l~~  159 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQILGV-DRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYA  159 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEEECTTSCHHHHTTHHHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcceecC-CCCCcceeEEEEchHHeEECCCCCCHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999998776553 3579999999999999999999999999998888889999997 


Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++|+++  +++.+.+++++
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~--~~~~~~~~~~~  228 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE--EDLLEVVRRVT  228 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT--SCHHHHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc--cCHHHHHHHhc
Confidence            7889 999999999999999999999999996799999999999999999 999998876  68888887765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=6.7e-43  Score=307.63  Aligned_cols=232  Identities=23%  Similarity=0.350  Sum_probs=203.6

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+.   ...+|.++|||++|+|+++|++++
T Consensus         4 p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             ccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCC---CCCCCccccccccEEEEEECCCCC
Confidence            3568899998886 699999999999999999999999999999998887532   135799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CC-----------------CCCCCceeEEEEecCCceEECC
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLP  150 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~~~~~~ip  150 (249)
                      +|++||+|++.+...|++|.+|+.+++++|.+....   +.                 ....|+|+||+.++.+.++++|
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            999999999999999999999999999999865321   10                 0135999999999999999999


Q ss_pred             CCCChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          151 DNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       151 ~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      +++++++|++++ .+.+||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  240 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI  240 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence            999999999887 578999887 568899999999999999999999999999997799999999999999999999999


Q ss_pred             cCCCCcccHHHHHHHHHH
Q 025712          229 KVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~  246 (249)
                      |+++.++++.+.++++++
T Consensus       241 ~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          241 NPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CGGGCSSCHHHHHHHHTT
T ss_pred             ccccccccHHHHHHHHhC
Confidence            877433578888877653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.4e-42  Score=302.64  Aligned_cols=227  Identities=27%  Similarity=0.424  Sum_probs=201.2

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++. ++++|+|.|+|+++||||||++++||++|+..+.+.+. ..+..+|.++|||++|+|+++|+++++|+
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   79 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAA-QYAYGLPLTLGHEGVGTVAELGEGVTGFG   79 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTT-TCCSCSSEECCSEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-ccCCCCCcccCcccEEEEEEECCCCCCCC
Confidence            68888998875 99999999999999999999999999999999887542 22357899999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCcccc----CCCCCCCceeEEEEec-CCceEECCCCCChhhhcccc-chHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF----GSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      +||+|++.+...|++|.+|+.+++++|......    .+....|+|+||+.++ .+.++++|+ +++++|+.+. .+.+|
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta  158 (345)
T 3jv7_A           80 VGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTP  158 (345)
T ss_dssp             TTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHH
T ss_pred             CCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHH
Confidence            999999999999999999999999999432221    1224679999999999 999999999 9999999665 68899


Q ss_pred             HHHHHHc--CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          168 VHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       168 ~~~l~~~--~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      |+++.+.  .+++|++|||+|+|++|++++|+|+++|..+|++++++++|+++++++|++++++++   +++.+.++++|
T Consensus       159 ~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~---~~~~~~v~~~t  235 (345)
T 3jv7_A          159 YHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG---AGAADAIRELT  235 (345)
T ss_dssp             HHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECS---TTHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCC---CcHHHHHHHHh
Confidence            9999775  899999999999999999999999999544999999999999999999999999876   37888888887


Q ss_pred             H
Q 025712          246 Q  246 (249)
Q Consensus       246 ~  246 (249)
                      +
T Consensus       236 ~  236 (345)
T 3jv7_A          236 G  236 (345)
T ss_dssp             G
T ss_pred             C
Confidence            5

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=7.6e-42  Score=297.38  Aligned_cols=225  Identities=34%  Similarity=0.491  Sum_probs=200.6

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++ .++++++|.|+|+++||||||++++||++|+..+.|.+.  ....+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~GhE~~G~V~~vG~~v~~~~   78 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP--VKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCC--cCCCCCeeccccceEEEEEECCCCCcCC
Confidence            5778888877 799999999999999999999999999999998887542  1236799999999999999999999999


Q ss_pred             CCCeEEEccCc-CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH
Q 025712           94 VGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC  171 (249)
Q Consensus        94 ~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l  171 (249)
                      +||+|++.+.. .|++|.+|+.+++++|.+....+. ...|+|+||+.++.+.++++|+++++++|+.+. ...+||+++
T Consensus        79 vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l  157 (339)
T 1rjw_A           79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL  157 (339)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH
T ss_pred             CCCEEEEecCCCCCCCCchhhCcCcccCCCcceeec-CCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            99999987654 599999999999999998766653 467999999999999999999999999998776 567899999


Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +..++++|++|||+|+|++|++++|+++.+|+ +|++++++++++++++++|+++++|+++  +++.+.+++++
T Consensus       158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~--~~~~~~~~~~~  228 (339)
T 1rjw_A          158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK--EDAAKFMKEKV  228 (339)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT--SCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC--ccHHHHHHHHh
Confidence            87799999999999989999999999999999 8999999999999999999999998875  67877777654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.9e-42  Score=300.19  Aligned_cols=212  Identities=26%  Similarity=0.362  Sum_probs=189.8

Q ss_pred             cccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      .++|+++++.++ +.++++++|.|+|+++||||||++++||++|+..+.+.+.   ...+|.++|||++|+|+++|++++
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~V~~vG~~v~   78 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWK---EGIYPMIPGHEIAGIIKEVGKGVK   78 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSS---CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCC---CCCCCeecCcceeEEEEEECCCCC
Confidence            357899998877 5799999999999999999999999999999999987542   246799999999999999999999


Q ss_pred             CCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCC---------CCCCceeEEEEecCCceEECCCCCChhhhcc
Q 025712           91 SLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSP---------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM  160 (249)
Q Consensus        91 ~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~  160 (249)
                      +|++||+|++.+. ..|++|.+|+.+++++|. ....+..         ...|+|+||+.++.+.++++|+++++++|+.
T Consensus        79 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  157 (348)
T 3two_A           79 KFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAP  157 (348)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGG
T ss_pred             CCCCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhh
Confidence            9999999998654 699999999999999998 3222211         1349999999999999999999999999997


Q ss_pred             cc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          161 CE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       161 ~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      ++ ...+||+++++.++++|++|||+|+|++|++++|+|+.+|+ +|++++.+++|+++++++|+++++
T Consensus       158 l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          158 LLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             GGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE
T ss_pred             hhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec
Confidence            76 57799999988899999999999999999999999999999 899999999999999999999988

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.9e-42  Score=297.95  Aligned_cols=226  Identities=25%  Similarity=0.391  Sum_probs=202.0

Q ss_pred             ceEEEEec--CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           15 NMAAWLLG--IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        15 ~~~~~~~~--~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      |||+++..  ++.++++|.|.|+|++|||||||+|++||++|+++++|.+    +..+|.++|||++|+|+++|++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~----~~~~p~i~GhE~aG~V~~vG~~V~~~   76 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDF----GNKAGTVLGHEGIGIVKEIGADVSSL   76 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTT----CCCTTCBCCSEEEEEEEEECTTCCSC
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCC----CCCCCcccceeEEEEEEEECceeeec
Confidence            67888763  3579999999999999999999999999999999988754    35689999999999999999999999


Q ss_pred             CCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           93 EVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        93 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      ++||+|++.+. ..|+.|.+|..+.+.+|......+. ..+|+|+||+.++.+.++++|+++++++|++++ ...++|++
T Consensus        77 ~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  155 (348)
T 4eez_A           77 QVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKA  155 (348)
T ss_dssp             CTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEeecccccccCccccccCCccccccccccccc-ccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEee
Confidence            99999988665 4788999999999999998766653 468999999999999999999999999999777 57789999


Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQA  247 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~  247 (249)
                      ++..++++|++|||+|+|++|.+++|+++.++..+|++++++++|+++++++|+++++|+++  +++.++++++|+.
T Consensus       156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~--~~~~~~v~~~t~g  230 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD--VNPVDEIKKITGG  230 (348)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C--CCHHHHHHHHTTS
T ss_pred             ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC--CCHHHHhhhhcCC
Confidence            98889999999999999999999999999875559999999999999999999999999887  7899999888753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-41  Score=293.29  Aligned_cols=230  Identities=22%  Similarity=0.318  Sum_probs=202.9

Q ss_pred             CcccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           11 DKNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++.+||++++.+++ .++++++|.|+|+++||||||++++||++|+.++.|.+.  ....+|.++|||++|+|+++|+++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~~v   79 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWP--LPVKLPLVGGHEGAGVVVGMGENV   79 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSEECCCEEEEEEEEECTTC
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCC--CCCCCCcccCccceEEEEEECCCC
Confidence            34568899998887 799999999999999999999999999999998887532  124679999999999999999999


Q ss_pred             CCCCCCCeEEEccCc-CCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           90 KSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      ++|++||+|++.+.. .|++|.+|+.+++++|.+....| ....|+|+||+.++.+.++++|+++++++|+.+. .+.+|
T Consensus        80 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g-~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  158 (347)
T 2hcy_A           80 KGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSG-YTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV  158 (347)
T ss_dssp             CSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBT-TTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHH
T ss_pred             CCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccc-cCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHH
Confidence            999999999987654 59999999999999999876655 3467999999999999999999999999998776 57789


Q ss_pred             HHHHHHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          168 VHACRRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      |+++++.++++|+++||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++|+++ .+++.+.+.+++
T Consensus       159 ~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~  235 (347)
T 2hcy_A          159 YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTK-EKDIVGAVLKAT  235 (347)
T ss_dssp             HHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTT-CSCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCc-cHhHHHHHHHHh
Confidence            99998889999999999985 9999999999999999 8999999999999999999999998773 267777777665

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-41  Score=302.06  Aligned_cols=227  Identities=30%  Similarity=0.497  Sum_probs=199.1

Q ss_pred             cceEEEEecCCCeEEEEecCCCCC-CCc------EEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEec
Q 025712           14 QNMAAWLLGIKTLKIQPYHLPTLG-PQD------VKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~p~~~-~~e------VlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      +||++++.+++.++++++|.|+|+ ++|      |||||++++||++|+.++.|.+    +..+|.++|||++|+|+++|
T Consensus         2 ~Mka~~~~~~~~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~----~~~~p~v~GhE~~G~V~~vG   77 (398)
T 1kol_A            2 GNRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRT----TAQVGLVLGHEITGEVIEKG   77 (398)
T ss_dssp             CEEEEEEEETTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCS----CCCTTCBCCCCEEEEEEEEC
T ss_pred             ccEEEEEecCCceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCC----CCCCCcccCcccEEEEEEEC
Confidence            478889999999999999999997 898      9999999999999999988743    24578999999999999999


Q ss_pred             CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcc------ccCC---CCCCCceeEEEEecCC--ceEECCCCCCh
Q 025712           87 SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------FFGS---PPTNGSLAHKVVHPAK--LCYKLPDNVSL  155 (249)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~g~~~~~~~~~~~--~~~~ip~~~~~  155 (249)
                      +++++|++||+|++.+...|++|.+|+.+++++|....      ..+.   ....|+|+||+.++.+  +++++|+++++
T Consensus        78 ~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~  157 (398)
T 1kol_A           78 RDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA  157 (398)
T ss_dssp             TTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHH
T ss_pred             CCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcch
Confidence            99999999999999888899999999999999998753      1221   1246999999999987  89999999988


Q ss_pred             hh----hcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          156 EE----GAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       156 ~~----aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      .+    ++.+. ++.+||++++.+++++|++|||+|+|++|++++|+||++|+++|++++++++|+++++++|++ ++|+
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~  236 (398)
T 1kol_A          158 MEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADL  236 (398)
T ss_dssp             HHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEET
T ss_pred             hhhcccccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEcc
Confidence            87    45554 688999999889999999999999999999999999999997799999999999999999997 7887


Q ss_pred             CCCcccHHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (249)
                      +++ +++.+.++++++
T Consensus       237 ~~~-~~~~~~v~~~t~  251 (398)
T 1kol_A          237 SLD-TPLHEQIAALLG  251 (398)
T ss_dssp             TSS-SCHHHHHHHHHS
T ss_pred             CCc-chHHHHHHHHhC
Confidence            652 348888888764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.1e-41  Score=298.73  Aligned_cols=222  Identities=25%  Similarity=0.394  Sum_probs=194.3

Q ss_pred             ccceEEEEecCC-CeEEEE--ecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQP--YHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~--~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++||++++.+++ .+++++  +|.|+|+++||||||++++||++|+..+.|.+.   ...+|.++|||++|+|+++|+++
T Consensus         5 ~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~GhE~~G~V~~vG~~v   81 (360)
T 1piw_A            5 EKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKVVKLGPKS   81 (360)
T ss_dssp             TCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEEEEECTTC
T ss_pred             hheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCC---CCCCCcccCcCceEEEEEeCCCC
Confidence            458888888875 689999  999999999999999999999999999887532   13579999999999999999999


Q ss_pred             C-CCCCCCeEEEcc-CcCCCCCccccCCCCCCCcCc-cccC-----CCCCCCceeEEEEecCCceEECCCCCChhhhccc
Q 025712           90 K-SLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEM-RFFG-----SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC  161 (249)
Q Consensus        90 ~-~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~  161 (249)
                      + +|++||+|++.+ ...|++|.+|+.+++++|.+. ...+     +....|+|+||+.++.+.++++|+++++++|+.+
T Consensus        82 ~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  161 (360)
T 1piw_A           82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPL  161 (360)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGG
T ss_pred             CCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhh
Confidence            9 999999996644 468999999999999999875 2221     1235799999999999999999999999999876


Q ss_pred             c-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcc-cHHH
Q 025712          162 E-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE-MWGR  239 (249)
Q Consensus       162 ~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~-~~~~  239 (249)
                      . .+.+||+++.++++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++  + ++.+
T Consensus       162 ~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~--~~~~~~  238 (360)
T 1piw_A          162 LCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLE--EGDWGE  238 (360)
T ss_dssp             GTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGG--TSCHHH
T ss_pred             hhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCcC--chHHHH
Confidence            6 57799999988999999999999999999999999999999 7999999999999999999999998875  4 5554


Q ss_pred             H
Q 025712          240 Y  240 (249)
Q Consensus       240 ~  240 (249)
                      .
T Consensus       239 ~  239 (360)
T 1piw_A          239 K  239 (360)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=4.1e-42  Score=305.71  Aligned_cols=232  Identities=29%  Similarity=0.517  Sum_probs=202.8

Q ss_pred             cccceEEEEecCCCeEEEEecCCC-CCCCcEEEEEeEEecccchHhhHhcccccc----cCCCCCceeccceEEEEEEec
Q 025712           12 KNQNMAAWLLGIKTLKIQPYHLPT-LGPQDVKVRIKALGICGSDVHHFKTMRCAN----FIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~----~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      ..+|+++++..+..++++++|.|+ |+++||||||++++||++|+.++.+...+.    ....+|.++|||++|+|+++|
T Consensus        28 ~~~m~a~~~~~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG  107 (404)
T 3ip1_A           28 KLTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAG  107 (404)
T ss_dssp             TBBSCGGGTEEEEEEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEEC
T ss_pred             hhhcceEEEEeCCceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEEC
Confidence            345677776666689999999999 999999999999999999999887643221    124689999999999999999


Q ss_pred             CCC------CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCCh-----
Q 025712           87 SEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSL-----  155 (249)
Q Consensus        87 ~~v------~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~-----  155 (249)
                      +++      ++|++||+|++.+...|++|.+|+.|.+++|.+....|. ...|+|+||+.++.+.++++|+++++     
T Consensus       108 ~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~  186 (404)
T 3ip1_A          108 PEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGF-NVDGAFAEYVKVDAKYAWSLRELEGVYEGDR  186 (404)
T ss_dssp             TTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEECGGGBTTBCTHH
T ss_pred             CCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCC-CCCCCCcceEEechHHeEecccccccccccc
Confidence            999      899999999999999999999999999999998877664 46899999999999999999998753     


Q ss_pred             -hhhc-cccchHHHHHHHH-H-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          156 -EEGA-MCEPLSVGVHACR-R-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       156 -~~aa-~~~~~~~a~~~l~-~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                       .+++ +..++.+||+++. . +++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++|++
T Consensus       187 ~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  266 (404)
T 3ip1_A          187 LFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPT  266 (404)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTT
T ss_pred             chhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCC
Confidence             3344 4457889999984 3 4899999999999999999999999999998899999999999999999999999987


Q ss_pred             CCcccHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (249)
                      .  +++.+.++++|+
T Consensus       267 ~--~~~~~~i~~~t~  279 (404)
T 3ip1_A          267 K--ENFVEAVLDYTN  279 (404)
T ss_dssp             T--SCHHHHHHHHTT
T ss_pred             C--CCHHHHHHHHhC
Confidence            6  789999988764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.9e-41  Score=300.83  Aligned_cols=226  Identities=29%  Similarity=0.499  Sum_probs=199.3

Q ss_pred             cceEEEEecCCCeEEEEecCCCC-CC-----CcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           14 QNMAAWLLGIKTLKIQPYHLPTL-GP-----QDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~p~~-~~-----~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      +||++++.+++.++++++|.|+| ++     +||||||++++||++|+.++.|.+    ...+|.++|||++|+|+++|+
T Consensus         2 ~MkA~~~~~~~~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~----~~~~p~v~GhE~~G~V~~vG~   77 (398)
T 2dph_A            2 GNKSVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRF----IVPKGHVLGHEITGEVVEKGS   77 (398)
T ss_dssp             CEEEEEEEETTEEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSS----CCCTTCBCCCCEEEEEEEECT
T ss_pred             ccEEEEEEcCCCEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCC----CCCCCcccCCceEEEEEEECC
Confidence            47889999999999999999987 68     999999999999999999988742    246799999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcC--cc------ccCC--CCCCCceeEEEEecCC--ceEECCCCCCh
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE--MR------FFGS--PPTNGSLAHKVVHPAK--LCYKLPDNVSL  155 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~--~~~~g~~~~~~~~~~~--~~~~ip~~~~~  155 (249)
                      ++++|++||+|++.+...|++|.+|+.+++++|.+  ..      ..|.  ....|+|+||+.++.+  .++++|+++++
T Consensus        78 ~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~  157 (398)
T 2dph_A           78 DVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQA  157 (398)
T ss_dssp             TCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHH
T ss_pred             CCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCCh
Confidence            99999999999999999999999999999999986  21      1221  1257999999999987  89999999998


Q ss_pred             hh----hcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          156 EE----GAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       156 ~~----aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      ++    |+++. ++.+||++++.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++ ++|+
T Consensus       158 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~  236 (398)
T 2dph_A          158 MEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE-TIDL  236 (398)
T ss_dssp             HHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-EEET
T ss_pred             hhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEcC
Confidence            87    66555 788999999889999999999999999999999999999997899999999999999999995 8888


Q ss_pred             CCCcccH-HHHHHHHHH
Q 025712          231 STDIEMW-GRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~-~~~~~~~~~  246 (249)
                      ++  +++ .+.++++++
T Consensus       237 ~~--~~~~~~~~~~~~~  251 (398)
T 2dph_A          237 RN--SAPLRDQIDQILG  251 (398)
T ss_dssp             TS--SSCHHHHHHHHHS
T ss_pred             CC--cchHHHHHHHHhC
Confidence            75  564 788877764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=6.7e-42  Score=299.68  Aligned_cols=220  Identities=19%  Similarity=0.271  Sum_probs=194.7

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCC---CceeccceEEEEEEecCCCC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK---PMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~---p~~~G~e~~G~V~~vG~~v~   90 (249)
                      ||++++.+++. ++++++|.|+|+++||||||++++||++|+.++.|.+..   ..+   |.++|||++| |+++|++ +
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~~~~p~v~G~E~~G-V~~vG~~-~   75 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG---FPEGEDHLVLGHEAVG-VVVDPND-T   75 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT---SCTTCSEEECCSEEEE-EEEECTT-S
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC---CCCCCCCcccCceeEE-EEEECCC-C
Confidence            67888998887 999999999999999999999999999999998875321   345   8999999999 9999999 9


Q ss_pred             CCCCCCeEEEccCcC--CCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHH
Q 025712           91 SLEVGDRVALEPGIS--CGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV  166 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~  166 (249)
                      +|++||+|++.+...  |++|.+|+.+++++|.+....  |.....|+|+||+.++++.++++|++++ +.|++..++.+
T Consensus        76 ~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~aal~~~~~t  154 (357)
T 2b5w_A           76 ELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISI  154 (357)
T ss_dssp             SCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TTGGGHHHHHH
T ss_pred             CCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hhhhhhchHHH
Confidence            999999999988777  999999999999999987665  4223579999999999999999999999 77776668889


Q ss_pred             HHHHHHHcCCCCC------CeEEEEcCChHHHHH-HHHH-HHcCCCeEEEEeCChh---HHHHHHHcCCCEEecCCCCcc
Q 025712          167 GVHACRRANVGPE------TNVMIMGSGPIGLVT-LLAA-RAFGAPRIIITDVDVQ---RLSIARNLGADETAKVSTDIE  235 (249)
Q Consensus       167 a~~~l~~~~~~~g------~~vlI~G~g~vG~~a-i~la-~~~G~~~vi~~~~~~~---~~~~~~~~ga~~vi~~~~~~~  235 (249)
                      ||++++.+++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |+++++++|++++ |+++  +
T Consensus       155 a~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~--~  231 (357)
T 2b5w_A          155 TEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQ--T  231 (357)
T ss_dssp             HHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTT--S
T ss_pred             HHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCc--c
Confidence            9999988888999      999999999999999 9999 9999955999999999   9999999999999 8875  5


Q ss_pred             cHHHHHHHH
Q 025712          236 MWGRYKMQW  244 (249)
Q Consensus       236 ~~~~~~~~~  244 (249)
                      ++.+ ++++
T Consensus       232 ~~~~-i~~~  239 (357)
T 2b5w_A          232 PVED-VPDV  239 (357)
T ss_dssp             CGGG-HHHH
T ss_pred             CHHH-HHHh
Confidence            6666 5543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-41  Score=295.74  Aligned_cols=216  Identities=26%  Similarity=0.373  Sum_probs=190.2

Q ss_pred             ccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++|++....++ +.++++++|.|+|+++||||||++++||++|+..+.|.+.   ...+|.++|||++|+|+++|+++++
T Consensus        21 ~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~~   97 (369)
T 1uuf_A           21 LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQVEK   97 (369)
T ss_dssp             --CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             ceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCC---CCCCCeecccCceEEEEEECCCCCC
Confidence            34677777666 6899999999999999999999999999999998887532   1357999999999999999999999


Q ss_pred             CCCCCeEEEccC-cCCCCCccccCCCCCCCcCcc--ccC-----CCCCCCceeEEEEecCCceEECCCC-CChhhhcccc
Q 025712           92 LEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMR--FFG-----SPPTNGSLAHKVVHPAKLCYKLPDN-VSLEEGAMCE  162 (249)
Q Consensus        92 ~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~g~~~~~~~~~~~~~~~ip~~-~~~~~aa~~~  162 (249)
                      |++||+|++.+. ..|++|.+|+.|++++|.+..  +.+     +....|+|+||+.++.+.++++|++ +++++|+.+.
T Consensus        98 ~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~  177 (369)
T 1uuf_A           98 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLL  177 (369)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGG
T ss_pred             CCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhh
Confidence            999999998776 479999999999999998752  211     1135699999999999999999999 9999988666


Q ss_pred             -chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          163 -PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       163 -~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                       .+.+||+++...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+++
T Consensus       178 ~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~  247 (369)
T 1uuf_A          178 CAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRN  247 (369)
T ss_dssp             THHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTC
T ss_pred             hhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEecccc
Confidence             57799999988899999999999999999999999999999 6999999999999999999999999875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=7.2e-41  Score=291.63  Aligned_cols=225  Identities=30%  Similarity=0.511  Sum_probs=200.9

Q ss_pred             ceEEEEecCCC---eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIKT---LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~~---l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.+++.   ++++++|.|+|+++||||||++++||++|+.++.|.+.  ....+|.++|||++|+|+++|+++++
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVAS--PKLPLPHVLGADGSGVVDAVGPGVEG   78 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSS--TTCCSSEECCSEEEEEEEEECSSCCS
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCC--CCCCCCcccccceEEEEEEECCCCCC
Confidence            57888887653   99999999999999999999999999999998887542  11367999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-cchHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~  170 (249)
                      |++||+|++.+...|++|.+|+.+++++|.+....|. ...|+|+||+.++.+.++++|+++++++|+.+ .++.+||++
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~a  157 (343)
T 2eih_A           79 FAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGE-HRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM  157 (343)
T ss_dssp             CCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCcccchhhccCcccccccccccCc-CCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHH
Confidence            9999999999989999999999999999998776553 35799999999999999999999999999944 478899999


Q ss_pred             HHH-cCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CRR-ANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~~-~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +.. .++++|+++||+|+ |++|++++|+++..|+ +|++++++++++++++++|+++++|+++  +++.+.+.+++
T Consensus       158 l~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~~~~~  231 (343)
T 2eih_A          158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKEVRRLT  231 (343)
T ss_dssp             HTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS--TTHHHHHHHHT
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHh
Confidence            966 68999999999985 9999999999999999 8999999999999999999999998876  57877777765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=4.4e-41  Score=293.07  Aligned_cols=213  Identities=26%  Similarity=0.417  Sum_probs=186.6

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      .+||++++.+++ .++++++|.|+|+++||||||++++||++|+..+.|.+.. ....+|.++|||++|+|+++|++ ++
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAK-QGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCC-TTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcc-cCCCCCccccccceEEEEEECCC-CC
Confidence            458888898885 7999999999999999999999999999999998875321 12367999999999999999999 99


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEec-CCceEECCCCCChhhhcccc-chHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      |++||+|+..+...|++|.+|+.+++++|.+....|. ...|+|+||+.++ +++++++ +++++++|+.+. ...+||+
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~  157 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQ-TTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMG  157 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTT-TBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCcccccc-ccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHH
Confidence            9999999988888999999999999999998765553 4679999999999 9999999 999999998666 5678999


Q ss_pred             HHHHc-----CCCCCCeEEEEcCChHHHHHHHHHHHc--CCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          170 ACRRA-----NVGPETNVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       170 ~l~~~-----~~~~g~~vlI~G~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++..     ++ +|++|||+|+|++|++++|+|+.+  |+ +|++++++++++++++++|+++++|++
T Consensus       158 al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          158 AIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             HHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             HHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            99776     88 999999999999999999999999  99 799999999999999999999999865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.9e-40  Score=289.96  Aligned_cols=225  Identities=22%  Similarity=0.201  Sum_probs=194.1

Q ss_pred             CCcccceEEEEe--cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           10 GDKNQNMAAWLL--GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        10 ~~~~~~~~~~~~--~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ||+.+||++++.  +++.+++++.|.|+|+++||||||++++||++|+.++.|.+..  ...+|.++|||++|+|+++|+
T Consensus        23 ~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~GhE~~G~V~~vG~  100 (363)
T 3uog_A           23 MMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL--DLAFPFVPASDMSGVVEAVGK  100 (363)
T ss_dssp             CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC--CCCSSBCCCCEEEEEEEEECT
T ss_pred             cCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcCcccceEEEEEEECC
Confidence            455668888888  5579999999999999999999999999999999999875421  246899999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcC---ccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-c
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE---MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-P  163 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~  163 (249)
                      ++++|++||+|++.+..      .|+.+. ++|.+   .....+...+|+|+||+.++.+.++++|+++++++|++++ .
T Consensus       101 ~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~  173 (363)
T 3uog_A          101 SVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCA  173 (363)
T ss_dssp             TCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTH
T ss_pred             CCCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccH
Confidence            99999999999987643      556666 77763   1110123467999999999999999999999999999777 5


Q ss_pred             hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          164 LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       164 ~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      +.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|.+  .+++.+.++
T Consensus       174 ~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~--~~~~~~~v~  250 (363)
T 3uog_A          174 GLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRL--EEDWVERVY  250 (363)
T ss_dssp             HHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETT--TSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCC--cccHHHHHH
Confidence            77999999 67899999999999999999999999999999 899999999999999999999999833  378999998


Q ss_pred             HHHH
Q 025712          243 QWVQ  246 (249)
Q Consensus       243 ~~~~  246 (249)
                      ++++
T Consensus       251 ~~~~  254 (363)
T 3uog_A          251 ALTG  254 (363)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            8875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.5e-40  Score=286.44  Aligned_cols=226  Identities=32%  Similarity=0.461  Sum_probs=200.0

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc-----ccCCCCCceeccceEEEEEEecCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-----NFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-----~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      ||++++.+++ .++++++|.|+|+++||||||.+++||++|+.++.|.+..     .....+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            5788888875 7999999999999999999999999999999988775321     012367999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecC-CceEECCCCCChhhhcccc-chHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      +++|++||+|+..+...|++|.+|+.+++++|.+....|. ...|+|+||+.++. +.++++ +++++++|+.+. ...+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~t  158 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGIT  158 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHH
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccc-cCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHH
Confidence            9999999999888888999999999999999998766653 46799999999999 999999 999999998666 4678


Q ss_pred             HHHHHHHcCCCCCCeEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIMGS-GPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ||+++++.++++|+++||+|+ |++|++++|+++.. |+ +|++++++++++++++++|+++++|+++  +++.+.+.++
T Consensus       159 a~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~  235 (347)
T 1jvb_A          159 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM--QDPLAEIRRI  235 (347)
T ss_dssp             HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC--ccHHHHHHHH
Confidence            999998899999999999995 59999999999999 99 7999999999999999999999998776  6777777766


Q ss_pred             H
Q 025712          245 V  245 (249)
Q Consensus       245 ~  245 (249)
                      +
T Consensus       236 ~  236 (347)
T 1jvb_A          236 T  236 (347)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=6.7e-40  Score=287.04  Aligned_cols=216  Identities=29%  Similarity=0.417  Sum_probs=189.6

Q ss_pred             ccceEEEEecC-CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++++++...++ +.++++++|.|+|+++||||||++++||++|+..+.|.+.   ...+|.++|||++|+|+++|+++++
T Consensus         8 m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~v~~   84 (357)
T 2cf5_A            8 RKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLG---MSNYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_dssp             CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTT---CCCSSBCCCCEEEEEEEEECSSCCS
T ss_pred             ceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCC---CCCCCeecCcceeEEEEEECCCCCC
Confidence            45677777764 6899999999999999999999999999999998887532   1357999999999999999999999


Q ss_pred             CCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-c
Q 025712           92 LEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-P  163 (249)
Q Consensus        92 ~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~  163 (249)
                      |++||+|++.+. ..|++|.+|+.+++++|.+..+..      +....|+|+||+.++.+.++++|+++++++|+.+. .
T Consensus        85 ~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~  164 (357)
T 2cf5_A           85 FTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCA  164 (357)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTH
T ss_pred             CCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhh
Confidence            999999987554 589999999999999997543221      12357999999999999999999999999998766 5


Q ss_pred             hHHHHHHHHHcCCC-CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCEEecCCC
Q 025712          164 LSVGVHACRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVST  232 (249)
Q Consensus       164 ~~~a~~~l~~~~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~vi~~~~  232 (249)
                      ..+||+++++.+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++ ++|+++++|+++
T Consensus       165 ~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~  234 (357)
T 2cf5_A          165 GVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSD  234 (357)
T ss_dssp             HHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTC
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeecccc
Confidence            77999999888888 99999999999999999999999999 8999999999999988 899999998764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.6e-39  Score=283.29  Aligned_cols=217  Identities=26%  Similarity=0.397  Sum_probs=187.5

Q ss_pred             cccceEEEEec-CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLG-IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~-~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++++++...+ ++.++++++|.|+|+++||||||.+++||++|+..+.|.+.   ...+|.++|||++|+|+++|++++
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~   90 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWG---FSMYPLVPGHEIVGEVTEVGSKVK   90 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSS---CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCC---CCCCCEecccceEEEEEEECCCCC
Confidence            34455555544 46899999999999999999999999999999998887432   135799999999999999999999


Q ss_pred             CCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcccc-
Q 025712           91 SLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-  162 (249)
Q Consensus        91 ~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-  162 (249)
                      +|++||+|++.+. ..|++|.+|+.+++++|.......      +....|+|+||+.++.+.++++|+++++++|+.+. 
T Consensus        91 ~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~  170 (366)
T 1yqd_A           91 KVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLC  170 (366)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGT
T ss_pred             cCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhh
Confidence            9999999987654 589999999999999996543211      12357999999999999999999999999998766 


Q ss_pred             chHHHHHHHHHcCCC-CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCEEecCCC
Q 025712          163 PLSVGVHACRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVST  232 (249)
Q Consensus       163 ~~~~a~~~l~~~~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~vi~~~~  232 (249)
                      ...+||+++++.+++ +|++|||+|+|++|++++|+++.+|+ +|+++++++++++.++ ++|+++++|+++
T Consensus       171 ~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~  241 (366)
T 1yqd_A          171 AGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD  241 (366)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEETTC
T ss_pred             hHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEeccC
Confidence            577999999888888 99999999999999999999999999 8999999999999887 899999998774

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=7.9e-39  Score=288.69  Aligned_cols=221  Identities=25%  Similarity=0.250  Sum_probs=191.6

Q ss_pred             CcccceEEEEecC----------------CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccc-----------
Q 025712           11 DKNQNMAAWLLGI----------------KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRC-----------   63 (249)
Q Consensus        11 ~~~~~~~~~~~~~----------------~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~-----------   63 (249)
                      .+.+||++++.++                +.++++++|.|+|+++||||||.+++||++|++...+...           
T Consensus        27 iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~  106 (456)
T 3krt_A           27 LPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGR  106 (456)
T ss_dssp             CCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHT
T ss_pred             CCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhccc
Confidence            3467889999876                5799999999999999999999999999999865432100           


Q ss_pred             -cc--cCCCCC-ceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEE
Q 025712           64 -AN--FIVKKP-MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKV  139 (249)
Q Consensus        64 -~~--~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  139 (249)
                       +.  ....+| .++|||++|+|+++|+++++|++||+|++.+. .|+.|..|..+.+++|.+....|.....|+|+||+
T Consensus       107 ~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~  185 (456)
T 3krt_A          107 VSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIA  185 (456)
T ss_dssp             SCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEE
T ss_pred             cccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccccccCCCCCcccceE
Confidence             00  013567 69999999999999999999999999998754 68888889999999999988888766679999999


Q ss_pred             EecCCceEECCCCCChhhhcccc-chHHHHHHHHH---cCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          140 VHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR---ANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       140 ~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~---~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++.++++++|+++++++|+++. .+.+||+++..   +++++|++|||+|+ |++|++++|+|+.+|+ ++++++++++
T Consensus       186 ~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~  264 (456)
T 3krt_A          186 LVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQ  264 (456)
T ss_dssp             EEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHH
T ss_pred             EechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHH
Confidence            99999999999999999999776 57899998843   78999999999995 9999999999999999 7888889999


Q ss_pred             HHHHHHHcCCCEEecCCCC
Q 025712          215 RLSIARNLGADETAKVSTD  233 (249)
Q Consensus       215 ~~~~~~~~ga~~vi~~~~~  233 (249)
                      |+++++++|+++++|+...
T Consensus       265 ~~~~~~~lGa~~vi~~~~~  283 (456)
T 3krt_A          265 KAEICRAMGAEAIIDRNAE  283 (456)
T ss_dssp             HHHHHHHHTCCEEEETTTT
T ss_pred             HHHHHHhhCCcEEEecCcC
Confidence            9999999999999998763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1e-38  Score=287.31  Aligned_cols=220  Identities=23%  Similarity=0.294  Sum_probs=189.1

Q ss_pred             CcccceEEEEecCC--------------CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhc------------cccc
Q 025712           11 DKNQNMAAWLLGIK--------------TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKT------------MRCA   64 (249)
Q Consensus        11 ~~~~~~~~~~~~~~--------------~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~------------~~~~   64 (249)
                      ++++|+++++.+++              .++++|+|.|+|+++||||||++++||++|++....            ...+
T Consensus        21 ~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g  100 (447)
T 4a0s_A           21 VPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQG  100 (447)
T ss_dssp             CCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTC
T ss_pred             CChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccC
Confidence            55778999999876              799999999999999999999999999999753211            0001


Q ss_pred             cc--CCCCC-ceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEe
Q 025712           65 NF--IVKKP-MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH  141 (249)
Q Consensus        65 ~~--~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  141 (249)
                      ..  ....| .++|||++|+|+++|+++++|++||+|++.+...|+.|. |..+.+++|......|.....|+|+||+.+
T Consensus       101 ~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~~G~~~~~G~~aey~~v  179 (447)
T 4a0s_A          101 GWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRAWGFETNFGGLAEYGVV  179 (447)
T ss_dssp             GGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEETTTTSSSCSSBSEEEE
T ss_pred             ccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-ccccccccccccccccccCCCCceeeeeec
Confidence            11  12456 699999999999999999999999999999888777776 555788999988888765557999999999


Q ss_pred             cCCceEECCCCCChhhhcccc-chHHHHHHH---HHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          142 PAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC---RRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       142 ~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l---~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      +.++++++|+++++++|++++ .+.+||+++   +.+++++|++|||+|+ |++|++++|+++..|+ ++++++++++++
T Consensus       180 ~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~  258 (447)
T 4a0s_A          180 RASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKE  258 (447)
T ss_dssp             EGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred             CHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence            999999999999999999776 577999998   3488999999999995 9999999999999999 788888999999


Q ss_pred             HHHHHcCCCEEecCCC
Q 025712          217 SIARNLGADETAKVST  232 (249)
Q Consensus       217 ~~~~~~ga~~vi~~~~  232 (249)
                      ++++++|+++++|+.+
T Consensus       259 ~~~~~lGa~~~i~~~~  274 (447)
T 4a0s_A          259 AAVRALGCDLVINRAE  274 (447)
T ss_dssp             HHHHHTTCCCEEEHHH
T ss_pred             HHHHhcCCCEEEeccc
Confidence            9999999999998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.5e-39  Score=284.29  Aligned_cols=216  Identities=22%  Similarity=0.347  Sum_probs=187.7

Q ss_pred             ceEEEEecCCC-eEEEEecCCCCCC-CcEEEEEeEEecccchHhhHhc--ccccccCCCC---CceeccceEEEEEEecC
Q 025712           15 NMAAWLLGIKT-LKIQPYHLPTLGP-QDVKVRIKALGICGSDVHHFKT--MRCANFIVKK---PMVIGHECAGIIEEVGS   87 (249)
Q Consensus        15 ~~~~~~~~~~~-l~~~~~~~p~~~~-~eVlV~v~~~~i~~~D~~~~~~--~~~~~~~~~~---p~~~G~e~~G~V~~vG~   87 (249)
                      ||++++.+++. ++++++|.|+|++ +||||||++++||++|+.++.|  .+.   ...+   |.++|||++|+|++  +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~---~~~~~~~p~v~G~E~~G~V~~--~   75 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLS---TLPKGKDFLVLGHEAIGVVEE--S   75 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC----------CCSCEECCSEEEEEECS--C
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCC---CCCcCCCCCcCCcceEEEEEe--C
Confidence            67888888876 9999999999999 9999999999999999999887  331   1245   89999999999999  6


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc--CCCCCCCceeEEEEecCCceEECCCCCChhhhccccchH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS  165 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~  165 (249)
                      + ++|++||+|++.+...|++|.+|+.|++++|.+....  +.....|+|+||+.++++.++++|++++ ++|++..++.
T Consensus        76 ~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aal~~~~~  153 (366)
T 2cdc_A           76 Y-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLA  153 (366)
T ss_dssp             C-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGGGHHHHH
T ss_pred             C-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhhhcCcHH
Confidence            7 8999999999999999999999999999999986654  3211569999999999999999999999 8887666888


Q ss_pred             HHHHHHH-----HcCCC--C-------CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh---hHHHHHHHcCCCEEe
Q 025712          166 VGVHACR-----RANVG--P-------ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---QRLSIARNLGADETA  228 (249)
Q Consensus       166 ~a~~~l~-----~~~~~--~-------g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~---~~~~~~~~~ga~~vi  228 (249)
                      +||+++.     ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++++   +++++++++|++++ 
T Consensus       154 ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-  231 (366)
T 2cdc_A          154 DIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-  231 (366)
T ss_dssp             HHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-
T ss_pred             HHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-
Confidence            9999997     78888  8       9999999999999999999999999 899999998   99999999999988 


Q ss_pred             cCCCCcccHHHHHHH
Q 025712          229 KVSTDIEMWGRYKMQ  243 (249)
Q Consensus       229 ~~~~~~~~~~~~~~~  243 (249)
                      | ++   ++.+.+++
T Consensus       232 ~-~~---~~~~~~~~  242 (366)
T 2cdc_A          232 N-SS---NGYDKLKD  242 (366)
T ss_dssp             E-CT---TCSHHHHH
T ss_pred             c-hH---HHHHHHHH
Confidence            7 42   56666655

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=9.7e-38  Score=274.65  Aligned_cols=206  Identities=22%  Similarity=0.257  Sum_probs=176.6

Q ss_pred             CcccceEEEEecCCCeEEE-EecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           11 DKNQNMAAWLLGIKTLKIQ-PYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++.+|+++++.+++.++++ ++|.|+|+++||||||++++||++|+.++.+.      ...|.++|||++|+|+++|+++
T Consensus         8 ~p~~mkA~v~~~~~~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~------~~~p~v~G~e~~G~V~~vG~~v   81 (371)
T 3gqv_A            8 PPPQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF------ATPWAFLGTDYAGTVVAVGSDV   81 (371)
T ss_dssp             CCSCEEEEEECTTSCEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----------CCTTSCCCSEEEEEEEEECTTC
T ss_pred             CchhceeEEEcCCCceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC------CCCCccCccccEEEEEEeCCCC
Confidence            3456888899999999999 99999999999999999999999999887652      3568999999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGV  168 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~  168 (249)
                      ++|++||+|+..       |..|..+.             ...|+|+||+.++.+.++++|+++++++|++++. ..+||
T Consensus        82 ~~~~~GdrV~~~-------~~~~~~~~-------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~  141 (371)
T 3gqv_A           82 THIQVGDRVYGA-------QNEMCPRT-------------PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAG  141 (371)
T ss_dssp             CSCCTTCEEEEE-------CCTTCTTC-------------TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHH
T ss_pred             CCCCCCCEEEEe-------ccCCCCCC-------------CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHH
Confidence            999999999765       44444332             2579999999999999999999999999998763 56899


Q ss_pred             HHH-HH-cCC-----------CCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCc
Q 025712          169 HAC-RR-ANV-----------GPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI  234 (249)
Q Consensus       169 ~~l-~~-~~~-----------~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~  234 (249)
                      +++ +. .++           ++|++|||+|+ |++|++++|+|+.+|+ +||++. +++|+++++++|+++++|+++  
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~--  217 (371)
T 3gqv_A          142 LAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA--  217 (371)
T ss_dssp             HHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--
T ss_pred             HHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC--
Confidence            988 45 442           89999999985 9999999999999999 788885 899999999999999999886  


Q ss_pred             ccHHHHHHHHHH
Q 025712          235 EMWGRYKMQWVQ  246 (249)
Q Consensus       235 ~~~~~~~~~~~~  246 (249)
                      +++.+.++++|+
T Consensus       218 ~~~~~~v~~~t~  229 (371)
T 3gqv_A          218 PNLAQTIRTYTK  229 (371)
T ss_dssp             TTHHHHHHHHTT
T ss_pred             chHHHHHHHHcc
Confidence            789999988764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=4.4e-38  Score=270.97  Aligned_cols=188  Identities=23%  Similarity=0.297  Sum_probs=171.2

Q ss_pred             cccceEEEEe-cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLL-GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~-~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      |++||++++. +++.+++++.|.|+|+++||||||++++||++|+.++.+.+.   ...+|.++|||++|+|+++|++++
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~   78 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPI---NWSNGHVPGVDGAGVIVKVGAKVD   78 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTT---CCCTTCCCCSEEEEEEEEECTTSC
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCC---cCCCCCEeeeeeEEEEEEeCCCCC
Confidence            3468999999 789999999999999999999999999999999999988642   247899999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      +|++||+|+..+.                         ....|+|+||+.++.+.++++|+++++++|+.+. ++.+||+
T Consensus        79 ~~~vGdrV~~~~~-------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  133 (315)
T 3goh_A           79 SKMLGRRVAYHTS-------------------------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQ  133 (315)
T ss_dssp             GGGTTCEEEEECC-------------------------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCC-------------------------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHH
Confidence            9999999997632                         1257999999999999999999999999998555 7899999


Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      +++.+++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++++++
T Consensus       134 al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~  191 (315)
T 3goh_A          134 AFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR  191 (315)
T ss_dssp             HHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc
Confidence            9977899999999999999999999999999999 899998 999999999999999884

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=2.7e-37  Score=270.10  Aligned_cols=202  Identities=22%  Similarity=0.236  Sum_probs=181.0

Q ss_pred             CcccceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           11 DKNQNMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        11 ~~~~~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ++.+||++++.+   |+.+++++.|.|+|+++||||||.+++||++|+..+.|.+.  .+..+|.++|||++|+|+++|+
T Consensus        25 ~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~i~G~E~~G~V~~vG~  102 (353)
T 4dup_A           25 LPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYP--PPKDASPILGLELSGEIVGVGP  102 (353)
T ss_dssp             CCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSC--CCTTSCSSSCCEEEEEEEEECT
T ss_pred             CChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC--CCCCCCCccccccEEEEEEECC
Confidence            445688888886   45799999999999999999999999999999999887653  2245789999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      ++++|++||+|+...                            ..|+|+||+.++.+.++++|+++++++|+.+. ++.+
T Consensus       103 ~v~~~~vGdrV~~~~----------------------------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~t  154 (353)
T 4dup_A          103 GVSGYAVGDKVCGLA----------------------------NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFT  154 (353)
T ss_dssp             TCCSCCTTCEEEEEC----------------------------SSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHH
T ss_pred             CCCCCCCCCEEEEec----------------------------CCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHH
Confidence            999999999998652                            46999999999999999999999999998665 7889


Q ss_pred             HHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          167 GVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       167 a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ||+++ +.+++++|++|||+| +|++|++++|+++..|+ +|++++++++++++++++|+++++|+++  +++.+.++++
T Consensus       155 a~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~~~~~  231 (353)
T 4dup_A          155 VWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS--EDFAAVIKAE  231 (353)
T ss_dssp             HHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc--hHHHHHHHHH
Confidence            99998 678999999999995 89999999999999999 8999999999999999999999999876  7888888876


Q ss_pred             H
Q 025712          245 V  245 (249)
Q Consensus       245 ~  245 (249)
                      +
T Consensus       232 ~  232 (353)
T 4dup_A          232 T  232 (353)
T ss_dssp             H
T ss_pred             h
Confidence            5

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-37  Score=270.57  Aligned_cols=206  Identities=22%  Similarity=0.284  Sum_probs=180.0

Q ss_pred             cCccCCcccceEEEEec---CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEE
Q 025712            6 RDDEGDKNQNMAAWLLG---IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGII   82 (249)
Q Consensus         6 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V   82 (249)
                      .+...++.+||++++..   |+.+++++.|.|+|++|||||||++++||++|+.++.|.+.  ....+|.++|||++|+|
T Consensus        13 ~~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V   90 (342)
T 4eye_A           13 EAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQ--LKMEPPFVPGIETAGVV   90 (342)
T ss_dssp             -----CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSS--SCCCSSBCCCSEEEEEE
T ss_pred             cccccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCCCccceeEEEEE
Confidence            34445567788888885   56799999999999999999999999999999999887642  22468999999999999


Q ss_pred             EEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc-
Q 025712           83 EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-  161 (249)
Q Consensus        83 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-  161 (249)
                      +++|++++ |++||+|+.+                            ...|+|+||+.++.+.++++|+++++++|+.+ 
T Consensus        91 ~~vG~~v~-~~vGDrV~~~----------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  141 (342)
T 4eye_A           91 RSAPEGSG-IKPGDRVMAF----------------------------NFIGGYAERVAVAPSNILPTPPQLDDAEAVALI  141 (342)
T ss_dssp             EECCTTSS-CCTTCEEEEE----------------------------CSSCCSBSEEEECGGGEEECCTTSCHHHHHHHT
T ss_pred             EEECCCCC-CCCCCEEEEe----------------------------cCCCcceEEEEEcHHHeEECCCCCCHHHHHHhh
Confidence            99999999 9999999875                            24699999999999999999999999999755 


Q ss_pred             cchHHHHHHH-HHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHH
Q 025712          162 EPLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGR  239 (249)
Q Consensus       162 ~~~~~a~~~l-~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~  239 (249)
                      .++.+||+++ +.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|+++++|++   +++.+
T Consensus       142 ~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~---~~~~~  217 (342)
T 4eye_A          142 ANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE---EGWAK  217 (342)
T ss_dssp             THHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS---TTHHH
T ss_pred             hHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc---hhHHH
Confidence            4788999999 6789999999999985 9999999999999999 899999999999999999999999876   67888


Q ss_pred             HHHHHHH
Q 025712          240 YKMQWVQ  246 (249)
Q Consensus       240 ~~~~~~~  246 (249)
                      .++++++
T Consensus       218 ~v~~~~~  224 (342)
T 4eye_A          218 AVREATG  224 (342)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            8887764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2e-37  Score=269.54  Aligned_cols=202  Identities=19%  Similarity=0.183  Sum_probs=180.0

Q ss_pred             cccceEEEEecCCC----eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           12 KNQNMAAWLLGIKT----LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        12 ~~~~~~~~~~~~~~----l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      +++||++++.+++.    +++++.|.|+|+++||||||++++||++|+..+.|.+..  ...+|.++|||++|+|+++|+
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~vG~   79 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH--RIPLPNIPGYEGVGIVENVGA   79 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT--TSCSSBCCCSCCEEEEEEECT
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC--CCCCCCcCCcceEEEEEEeCC
Confidence            35789999987654    899999999999999999999999999999988876422  247899999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      ++++|++||+|+.+                            ...|+|+||+.++.+.++++|+++++++|+++. ...+
T Consensus        80 ~v~~~~vGdrV~~~----------------------------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~t  131 (340)
T 3gms_A           80 FVSRELIGKRVLPL----------------------------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLT  131 (340)
T ss_dssp             TSCGGGTTCEEEEC----------------------------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHH
T ss_pred             CCCCCCCCCEEEec----------------------------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHH
Confidence            99999999999864                            246999999999999999999999999999765 5667


Q ss_pred             HHHHH-HHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          167 GVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       167 a~~~l-~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      +|+++ +.+++++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++|+++++|++.  +++.+.++++
T Consensus       132 a~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~--~~~~~~~~~~  208 (340)
T 3gms_A          132 AWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST--APLYETVMEL  208 (340)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT--SCHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc--ccHHHHHHHH
Confidence            88777 6689999999999985 6999999999999999 8999999999999999999999999876  7888888887


Q ss_pred             HH
Q 025712          245 VQ  246 (249)
Q Consensus       245 ~~  246 (249)
                      ++
T Consensus       209 ~~  210 (340)
T 3gms_A          209 TN  210 (340)
T ss_dssp             TT
T ss_pred             hC
Confidence            64

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=4.8e-37  Score=265.18  Aligned_cols=194  Identities=19%  Similarity=0.249  Sum_probs=170.2

Q ss_pred             ccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcc--cccccCCCCCceeccceEEEEEEecC
Q 025712           13 NQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTM--RCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        13 ~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~--~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ++||++++.+++   .+++++.|.|+|+++||||||++++||++|+.++.|.  +.......+|.++|||++|+|+++|+
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            468999998654   4999999999999999999999999999999988872  11112357899999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSV  166 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~  166 (249)
                      ++++|++||+|+..+..                        ....|+|+||+.++++.++++|+++++++|++++ ...+
T Consensus        85 ~v~~~~~GdrV~~~~~~------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  140 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIAGF------------------------PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLT  140 (321)
T ss_dssp             TCCSCCTTCEEEEECST------------------------TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHH
T ss_pred             CCCCCCCCCEEEEccCC------------------------CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHH
Confidence            99999999999976321                        1246999999999999999999999999999876 4569


Q ss_pred             HHHHHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          167 GVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ||++++.+++++|++|||+| +|++|++++|+|+.+|+ +|+++. +++++++++++|+++++|+++
T Consensus       141 a~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~  205 (321)
T 3tqh_A          141 ALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE  205 (321)
T ss_dssp             HHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC
Confidence            99999889999999999997 89999999999999999 788886 667799999999999999886

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.2e-36  Score=263.95  Aligned_cols=200  Identities=24%  Similarity=0.303  Sum_probs=178.3

Q ss_pred             CcccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           11 DKNQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        11 ~~~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ++.+||++++.+++   .+++++.|.|+|+++||||||++++||++|+.++.|.+    +..+|.++|||++|+|+++|+
T Consensus         5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~----~~~~P~i~G~e~~G~V~~vG~   80 (334)
T 3qwb_A            5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY----PCEKPYVLGREASGTVVAKGK   80 (334)
T ss_dssp             CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSS----CCCSSEECCSEEEEEEEEECT
T ss_pred             CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCC----CCCCCCccccceEEEEEEECC
Confidence            34568888888765   49999999999999999999999999999999888754    245799999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEec-CCceEECCCCCChhh---hcccc-
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEE---GAMCE-  162 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~---aa~~~-  162 (249)
                      ++++|++||+|+..                             ..|+|+||+.++ .+.++++|+++++++   |+.+. 
T Consensus        81 ~v~~~~~GdrV~~~-----------------------------~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~  131 (334)
T 3qwb_A           81 GVTNFEVGDQVAYI-----------------------------SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLL  131 (334)
T ss_dssp             TCCSCCTTCEEEEE-----------------------------CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEe-----------------------------eCCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhh
Confidence            99999999999875                             469999999999 999999999999999   65444 


Q ss_pred             chHHHHHHHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHH
Q 025712          163 PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRY  240 (249)
Q Consensus       163 ~~~~a~~~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~  240 (249)
                      ...++|+++.. .++++|++|||+| +|++|++++|+++..|+ +|++++++++++++++++|+++++|+++  +++.+.
T Consensus       132 ~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~  208 (334)
T 3qwb_A          132 QVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK--EDILRQ  208 (334)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC--chHHHH
Confidence            57788988855 6899999999998 79999999999999999 8999999999999999999999999876  788888


Q ss_pred             HHHHHH
Q 025712          241 KMQWVQ  246 (249)
Q Consensus       241 ~~~~~~  246 (249)
                      ++++++
T Consensus       209 ~~~~~~  214 (334)
T 3qwb_A          209 VLKFTN  214 (334)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            888764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=6.2e-37  Score=268.76  Aligned_cols=206  Identities=19%  Similarity=0.185  Sum_probs=176.1

Q ss_pred             CccCCcccceEEEEe------cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEE
Q 025712            7 DDEGDKNQNMAAWLL------GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAG   80 (249)
Q Consensus         7 ~~~~~~~~~~~~~~~------~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G   80 (249)
                      +.++++++||++++.      +|+.++++++|.|.|+++||||||.+++||++|+..+.|.+..   ..+|.++|||++|
T Consensus        15 ~~~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~E~~G   91 (363)
T 4dvj_A           15 TENLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD---GTDWKVIGYDAAG   91 (363)
T ss_dssp             ----CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC-----CCSBCCCCCEEE
T ss_pred             chhhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC---CCCCCcccceeEE
Confidence            455567789999985      3578999999999999999999999999999999998876421   4689999999999


Q ss_pred             EEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcc
Q 025712           81 IIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM  160 (249)
Q Consensus        81 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~  160 (249)
                      +|+++|+++++|++||+|+..+.                         ....|+|+||+.++.+.++++|+++++++|++
T Consensus        92 ~V~~vG~~v~~~~vGdrV~~~~~-------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  146 (363)
T 4dvj_A           92 IVSAVGPDVTLFRPGDEVFYAGS-------------------------IIRPGTNAEFHLVDERIVGRKPKTLDWAEAAA  146 (363)
T ss_dssp             EEEEECTTCCSCCTTCEEEECCC-------------------------TTSCCSCBSEEEEEGGGCEECCTTSCHHHHHT
T ss_pred             EEEEeCCCCCCCCCCCEEEEccC-------------------------CCCCccceEEEEeCHHHeeECCCCCCHHHHHh
Confidence            99999999999999999986421                         12579999999999999999999999999998


Q ss_pred             ccc-hHHHHHHH-HHcCCC-----CCCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          161 CEP-LSVGVHAC-RRANVG-----PETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       161 ~~~-~~~a~~~l-~~~~~~-----~g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++. ..+||+++ +..+++     +|++|||+| +|++|++++|+|+.+ |+ +|++++++++|+++++++|+++++|++
T Consensus       147 l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~  225 (363)
T 4dvj_A          147 LPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHS  225 (363)
T ss_dssp             SHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTT
T ss_pred             hhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            864 56999998 567887     899999998 899999999999984 77 899999999999999999999999876


Q ss_pred             CCcccHHHHHHHH
Q 025712          232 TDIEMWGRYKMQW  244 (249)
Q Consensus       232 ~~~~~~~~~~~~~  244 (249)
                         +++.+.++++
T Consensus       226 ---~~~~~~v~~~  235 (363)
T 4dvj_A          226 ---KPLAAEVAAL  235 (363)
T ss_dssp             ---SCHHHHHHTT
T ss_pred             ---CCHHHHHHHh
Confidence               3566666543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.5e-36  Score=264.35  Aligned_cols=206  Identities=25%  Similarity=0.294  Sum_probs=178.3

Q ss_pred             CcccceEEEEecCCC-eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           11 DKNQNMAAWLLGIKT-LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++++||++++.+++. ++++++|.|+|+++||||||++++||++|+.++.+... .....+|.++|||++|+|+++|+++
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~~P~v~G~E~~G~V~~vG~~v   82 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAP-HAQQPLPAILGMDLAGTVVAVGPEV   82 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCG-GGCCCSSBCCCCEEEEEEEEECTTC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCC-CCCCCCCcccCcceEEEEEEECCCC
Confidence            346789999998875 99999999999999999999999999999998887542 1225689999999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGV  168 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~  168 (249)
                      ++|++||+|+....                       +.....|+|+||+.++.+.++++|+++++++|++++ ...+||
T Consensus        83 ~~~~vGdrV~~~~~-----------------------g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~  139 (343)
T 3gaz_A           83 DSFRVGDAVFGLTG-----------------------GVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAW  139 (343)
T ss_dssp             CSCCTTCEEEEECC-----------------------SSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHH
T ss_pred             CCCCCCCEEEEEeC-----------------------CCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHH
Confidence            99999999986421                       011257999999999999999999999999999876 466899


Q ss_pred             HHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          169 HAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       169 ~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +++ +.+++++|++|||+| +|++|++++|+++..|+ +|+++ .+++++++++++|++. +| +.  +++.+.+++++.
T Consensus       140 ~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~--~~~~~~~~~~~~  213 (343)
T 3gaz_A          140 EGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID-AS--REPEDYAAEHTA  213 (343)
T ss_dssp             HHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE-TT--SCHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec-cC--CCHHHHHHHHhc
Confidence            998 779999999999998 79999999999999999 89998 8999999999999999 77 43  778888887764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.7e-36  Score=263.02  Aligned_cols=198  Identities=22%  Similarity=0.281  Sum_probs=174.7

Q ss_pred             ccceEEEEec------CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEec
Q 025712           13 NQNMAAWLLG------IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        13 ~~~~~~~~~~------~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      ++||++++.+      ++.++++++|.|+|+++||||||++++||++|+..+.+.     ...+|.++|||++|+|+++|
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~-----~~~~p~i~G~e~~G~V~~vG   75 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD-----VSKAPRVLGFDAIGVVESVG   75 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC-----CSSSCBCCCCCEEEEEEEEC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC-----CCCCCcCcCCccEEEEEEeC
Confidence            3588888885      458999999999999999999999999999999988765     24789999999999999999


Q ss_pred             CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hH
Q 025712           87 SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LS  165 (249)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~  165 (249)
                      +++++|++||+|+....                         ....|+|+||+.++.+.++++|+++++++|++++. ..
T Consensus        76 ~~v~~~~~GdrV~~~~~-------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~  130 (346)
T 3fbg_A           76 NEVTMFNQGDIVYYSGS-------------------------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGI  130 (346)
T ss_dssp             TTCCSCCTTCEEEECCC-------------------------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHH
T ss_pred             CCCCcCCCCCEEEEcCC-------------------------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHH
Confidence            99999999999986421                         12579999999999999999999999999998764 55


Q ss_pred             HHHHHH-HHcCCC------CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccH
Q 025712          166 VGVHAC-RRANVG------PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMW  237 (249)
Q Consensus       166 ~a~~~l-~~~~~~------~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~  237 (249)
                      +||+++ +..+++      +|++|||+| +|++|++++|+++.+|+ +|++++++++++++++++|+++++|++   +++
T Consensus       131 ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~---~~~  206 (346)
T 3fbg_A          131 TAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHK---ESL  206 (346)
T ss_dssp             HHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTT---SCH
T ss_pred             HHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECC---ccH
Confidence            899988 567888      999999995 89999999999999999 899999999999999999999999876   357


Q ss_pred             HHHHHHH
Q 025712          238 GRYKMQW  244 (249)
Q Consensus       238 ~~~~~~~  244 (249)
                      .+.++++
T Consensus       207 ~~~~~~~  213 (346)
T 3fbg_A          207 LNQFKTQ  213 (346)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=2.2e-36  Score=261.49  Aligned_cols=199  Identities=29%  Similarity=0.304  Sum_probs=176.8

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.++   +.+++++.|.|+|+++||||||++++||++|+.++.|.+..   ..+|.++|||++|+|+++|+++++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~e~~G~V~~vG~~v~~   78 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA---PFLPSGLGAEGAGVVEAVGDEVTR   78 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---SSSSBCCCCCEEEEEEEECTTCCS
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC---CCCCCCCCceeEEEEEEECCCCCC
Confidence            577777754   46999999999999999999999999999999998875422   367999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      |++||+|+...                           ...|+|+||+.++.+.++++|+++++++|+.+. ...++|++
T Consensus        79 ~~~GdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~  131 (325)
T 3jyn_A           79 FKVGDRVAYGT---------------------------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYL  131 (325)
T ss_dssp             CCTTCEEEESS---------------------------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEec---------------------------CCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHH
Confidence            99999998642                           247999999999999999999999999999665 56688888


Q ss_pred             HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +. ..++++|++|||+| +|++|++++|+++..|+ +|++++++++++++++++|+++++|+++  +++.+.++++++
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~~~~~~~  206 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH--EDVAKRVLELTD  206 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHhC
Confidence            74 47899999999998 79999999999999999 8999999999999999999999999876  788888888764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=4.6e-37  Score=268.15  Aligned_cols=204  Identities=21%  Similarity=0.219  Sum_probs=176.7

Q ss_pred             cccceEEEEe------cCCCeEEEEe---------cCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceecc
Q 025712           12 KNQNMAAWLL------GIKTLKIQPY---------HLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH   76 (249)
Q Consensus        12 ~~~~~~~~~~------~~~~l~~~~~---------~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~   76 (249)
                      +.+||++++.      +++.+++++.         |.|+|+++||||||++++||++|+..+.|.+.  ....+|.++||
T Consensus         8 p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~~~p~v~G~   85 (349)
T 3pi7_A            8 PSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYG--QPRVKGRPAGF   85 (349)
T ss_dssp             CSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSS--SCBCTTSBCCS
T ss_pred             chhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCC--CCCCCCCCccc
Confidence            4568899998      5677888888         99999999999999999999999999987542  22468999999


Q ss_pred             ceEEEEEEecCCC-CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCCh
Q 025712           77 ECAGIIEEVGSEV-KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSL  155 (249)
Q Consensus        77 e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  155 (249)
                      |++|+|+++|+++ ++|++||+|++...                         ....|+|+||+.++.+.++++|+++++
T Consensus        86 E~~G~V~~vG~~v~~~~~vGdrV~~~~g-------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~  140 (349)
T 3pi7_A           86 EGVGTIVAGGDEPYAKSLVGKRVAFATG-------------------------LSNWGSWAEYAVAEAAACIPLLDTVRD  140 (349)
T ss_dssp             EEEEEEEEECSSHHHHHHTTCEEEEECT-------------------------TSSCCSSBSEEEEEGGGEEECCTTCCC
T ss_pred             eEEEEEEEECCCccCCCCCCCEEEEecc-------------------------CCCCccceeeEeechHHeEECCCCCCH
Confidence            9999999999999 99999999997631                         135799999999999999999999999


Q ss_pred             hhhcccc-chHHHHHHHHHcCCCCC-CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          156 EEGAMCE-PLSVGVHACRRANVGPE-TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       156 ~~aa~~~-~~~~a~~~l~~~~~~~g-~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++|+.+. ...+||++++.++ +++ +++||+| +|++|++++|+++..|+ +|++++++++++++++++|+++++|+++
T Consensus       141 ~~aa~l~~~~~ta~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~  218 (349)
T 3pi7_A          141 EDGAAMIVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA  218 (349)
T ss_dssp             --GGGSSHHHHHHHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS
T ss_pred             HHHhhccccHHHHHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc
Confidence            9999665 4667887777766 666 7888884 89999999999999999 8999999999999999999999999876


Q ss_pred             CcccHHHHHHHHHH
Q 025712          233 DIEMWGRYKMQWVQ  246 (249)
Q Consensus       233 ~~~~~~~~~~~~~~  246 (249)
                        +++.+.++++++
T Consensus       219 --~~~~~~v~~~~~  230 (349)
T 3pi7_A          219 --PDFEATLREVMK  230 (349)
T ss_dssp             --TTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhc
Confidence              789999988876

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.1e-35  Score=259.93  Aligned_cols=202  Identities=18%  Similarity=0.243  Sum_probs=177.3

Q ss_pred             CcccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           11 DKNQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        11 ~~~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ++.+||++++.+++   .+++++.|.|+|+++||||||.+++||++|+.++.|.+..  ...+|.++|||++|+|+++|+
T Consensus        19 ~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~p~v~G~E~~G~V~~vG~   96 (354)
T 2j8z_A           19 YFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGP   96 (354)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CTTSCSSSCSEEEEEEEEECS
T ss_pred             chhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEECC
Confidence            45568888888765   5999999999999999999999999999999988875421  235789999999999999999


Q ss_pred             CC-CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chH
Q 025712           88 EV-KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLS  165 (249)
Q Consensus        88 ~v-~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~  165 (249)
                      ++ ++|++||+|+.+.                            ..|+|+||+.++++.++++|+++++++|+++. ++.
T Consensus        97 ~v~~~~~vGdrV~~~~----------------------------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~  148 (354)
T 2j8z_A           97 GCQGHWKIGDTAMALL----------------------------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL  148 (354)
T ss_dssp             CC--CCCTTCEEEEEC----------------------------SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHH
T ss_pred             CcCCCCCCCCEEEEec----------------------------CCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHH
Confidence            99 9999999998651                            35999999999999999999999999998665 788


Q ss_pred             HHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          166 VGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       166 ~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +||+++ +.+++++|+++||+| +|++|++++|+++..|+ +|++++++++++++++++|++.++|+++  +++.+.+.+
T Consensus       149 tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~  225 (354)
T 2j8z_A          149 TAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK--EDFSEATLK  225 (354)
T ss_dssp             HHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hHHHHHHHH
Confidence            999999 678999999999998 79999999999999999 8999999999999999999999998876  678888877


Q ss_pred             HH
Q 025712          244 WV  245 (249)
Q Consensus       244 ~~  245 (249)
                      .+
T Consensus       226 ~~  227 (354)
T 2j8z_A          226 FT  227 (354)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-35  Score=257.32  Aligned_cols=202  Identities=24%  Similarity=0.323  Sum_probs=177.4

Q ss_pred             ccceEEEEecC---CCeEE-EEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           13 NQNMAAWLLGI---KTLKI-QPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        13 ~~~~~~~~~~~---~~l~~-~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      .+||++++.++   +.+++ ++.|.|+|+++||||||.+++||++|+.++.|.+..  ...+|.++|||++|+|+++|++
T Consensus        28 ~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           28 KLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSBCCCSCEEEEEEEECTT
T ss_pred             ceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcCCceeEEEEEEECCC
Confidence            34777777754   46899 899999999999999999999999999988875421  2357999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      +++|++||+|+..+                           ...|+|+||+.++.+.++++|+++++++|+++. ++.+|
T Consensus       106 v~~~~vGdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta  158 (351)
T 1yb5_A          106 ASAFKKGDRVFTSS---------------------------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTA  158 (351)
T ss_dssp             CTTCCTTCEEEESC---------------------------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHH
T ss_pred             CCCCCCCCEEEEeC---------------------------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHH
Confidence            99999999998652                           136999999999999999999999999998776 78899


Q ss_pred             HHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          168 VHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       168 ~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      |+++. ..++++|+++||+| +|++|++++|+++..|+ +|+++++++++.++++++|+++++|+++  +++.+.+.+.+
T Consensus       159 ~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~~~~~  235 (351)
T 1yb5_A          159 YRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYV  235 (351)
T ss_dssp             HHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--TTHHHHHHHHH
T ss_pred             HHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC--chHHHHHHHHc
Confidence            99995 68999999999998 59999999999999999 8999999999999999999999998876  67888887765


Q ss_pred             H
Q 025712          246 Q  246 (249)
Q Consensus       246 ~  246 (249)
                      .
T Consensus       236 ~  236 (351)
T 1yb5_A          236 G  236 (351)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=259.49  Aligned_cols=198  Identities=22%  Similarity=0.285  Sum_probs=175.2

Q ss_pred             ccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           13 NQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        13 ~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++||++++.+++   .+++++.|.|+|+++||||||++++||++|+.++.|.+.  ....+|.++|||++|+|+++|+++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~e~~G~V~~vG~~v   79 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNID--NPPKTPLVPGFECSGIVEALGDSV   79 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSEEEEEEEEECTTC
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcC--CCCCCCccccceeEEEEEEeCCCC
Confidence            568999999765   699999999999999999999999999999999988642  225789999999999999999999


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGV  168 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~  168 (249)
                      ++|++||+|+.++                            ..|+|+||+.++.++++++|+++++++|++++ ...+||
T Consensus        80 ~~~~~GdrV~~~~----------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~  131 (349)
T 4a27_A           80 KGYEIGDRVMAFV----------------------------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAY  131 (349)
T ss_dssp             CSCCTTCEEEEEC----------------------------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHH
T ss_pred             CCCCCCCEEEEec----------------------------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999998752                            46999999999999999999999999999777 578999


Q ss_pred             HHH-HHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          169 HAC-RRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       169 ~~l-~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +++ +.+++++|++|||+|+ |++|++++|+|+.+|..+|++++ ++++.++++ +|+++++| +.  +++.+.+++++
T Consensus       132 ~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~--~~~~~~~~~~~  205 (349)
T 4a27_A          132 VMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN--ADYVQEVKRIS  205 (349)
T ss_dssp             HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT--SCHHHHHHHHC
T ss_pred             HHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC--ccHHHHHHHhc
Confidence            998 5689999999999985 99999999999999755788886 678888888 99999998 43  78888887764

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2.9e-36  Score=265.90  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=175.2

Q ss_pred             ccceEEEEe-cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccc-------cc-------------------
Q 025712           13 NQNMAAWLL-GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRC-------AN-------------------   65 (249)
Q Consensus        13 ~~~~~~~~~-~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~-------~~-------------------   65 (249)
                      .+|++++.. ++..++++++|.|+|+++||||||++++||++|+.++.|.+.       +.                   
T Consensus         6 ~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~   85 (379)
T 3iup_A            6 LQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMA   85 (379)
T ss_dssp             EEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHG
T ss_pred             hhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccccc
Confidence            446666553 445799999999999999999999999999999999887421       00                   


Q ss_pred             cCCCCCceeccceEEEEEEecCCC-CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCC
Q 025712           66 FIVKKPMVIGHECAGIIEEVGSEV-KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK  144 (249)
Q Consensus        66 ~~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  144 (249)
                      ....+|.++|||++|+|+++|+++ ++|++||+|+..                             ..|+|+||+.++.+
T Consensus        86 ~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~-----------------------------~~G~~aey~~v~~~  136 (379)
T 3iup_A           86 GRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI-----------------------------GGAMYSQYRCIPAD  136 (379)
T ss_dssp             GGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEEC-----------------------------CSCCSBSEEEEEGG
T ss_pred             cccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEec-----------------------------CCCcceeEEEeCHH
Confidence            013578999999999999999999 899999999875                             35999999999999


Q ss_pred             ceEECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEE--cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          145 LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       145 ~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~--G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++|+++++++|+.+. ...+||++++... ++|++|||+  |+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       137 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  214 (379)
T 3iup_A          137 QCLVLPEGATPADGASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKA  214 (379)
T ss_dssp             GEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHH
T ss_pred             HeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh
Confidence            999999999999999665 4667888887766 899999999  579999999999999999 79999999999999999


Q ss_pred             cCCCEEecCCCCcccHHHHHHHHHHH
Q 025712          222 LGADETAKVSTDIEMWGRYKMQWVQA  247 (249)
Q Consensus       222 ~ga~~vi~~~~~~~~~~~~~~~~~~~  247 (249)
                      +|+++++|+++  +++.+.++++|+.
T Consensus       215 lGa~~~~~~~~--~~~~~~v~~~t~~  238 (379)
T 3iup_A          215 QGAVHVCNAAS--PTFMQDLTEALVS  238 (379)
T ss_dssp             TTCSCEEETTS--TTHHHHHHHHHHH
T ss_pred             CCCcEEEeCCC--hHHHHHHHHHhcC
Confidence            99999999876  7899999988764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.7e-35  Score=256.84  Aligned_cols=204  Identities=21%  Similarity=0.255  Sum_probs=173.4

Q ss_pred             CcccceEEEEecC---CCeEE-EEecCCCC-CCCcEEEEEeEEecccchHhhHhccccc------------ccCCCCCce
Q 025712           11 DKNQNMAAWLLGI---KTLKI-QPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCA------------NFIVKKPMV   73 (249)
Q Consensus        11 ~~~~~~~~~~~~~---~~l~~-~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~------------~~~~~~p~~   73 (249)
                      +..+||++++.++   ..+++ +++|.|.| +++||||||.+++||++|+.++.|....            .....+|.+
T Consensus        18 ~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v   97 (375)
T 2vn8_A           18 LYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLT   97 (375)
T ss_dssp             CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBC
T ss_pred             cCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcc
Confidence            4456788888765   36899 99999985 9999999999999999999988774211            011237999


Q ss_pred             eccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC
Q 025712           74 IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV  153 (249)
Q Consensus        74 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  153 (249)
                      +|||++|+|+++|+++++|++||+|+..+.                         ....|+|+||+.++++.++++|+++
T Consensus        98 ~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~-------------------------~~~~G~~aey~~v~~~~~~~iP~~l  152 (375)
T 2vn8_A           98 LGRDVSGVVMECGLDVKYFKPGDEVWAAVP-------------------------PWKQGTLSEFVVVSGNEVSHKPKSL  152 (375)
T ss_dssp             CCCEEEEEEEEECTTCCSCCTTCEEEEECC-------------------------TTSCCSSBSEEEEEGGGEEECCTTS
T ss_pred             cceeeeEEEEEeCCCCCCCCCCCEEEEecC-------------------------CCCCccceeEEEEcHHHeeeCCCCC
Confidence            999999999999999999999999987531                         1246999999999999999999999


Q ss_pred             Chhhhccccc-hHHHHHHHH-HcC----CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          154 SLEEGAMCEP-LSVGVHACR-RAN----VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l~-~~~----~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      ++++|++++. +.+||+++. .++    +++|++|||+| +|++|++++|+|+..|+ +|++++ +++++++++++|+++
T Consensus       153 s~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~  230 (375)
T 2vn8_A          153 THTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADD  230 (375)
T ss_dssp             CHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSE
T ss_pred             CHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCE
Confidence            9999998874 679999994 678    89999999998 79999999999999999 788887 678999999999999


Q ss_pred             EecCCCCcccHHHHHHH
Q 025712          227 TAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       227 vi~~~~~~~~~~~~~~~  243 (249)
                      ++|+++  +++.+.+++
T Consensus       231 v~~~~~--~~~~~~~~~  245 (375)
T 2vn8_A          231 VIDYKS--GSVEEQLKS  245 (375)
T ss_dssp             EEETTS--SCHHHHHHT
T ss_pred             EEECCc--hHHHHHHhh
Confidence            999876  667666643

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.8e-35  Score=259.41  Aligned_cols=203  Identities=18%  Similarity=0.212  Sum_probs=173.3

Q ss_pred             ccceEEEEecCCC----eEEEEecCCCCC--CCcEEEEEeEEecccchHhhHhcccccccCCCCC---------ceeccc
Q 025712           13 NQNMAAWLLGIKT----LKIQPYHLPTLG--PQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP---------MVIGHE   77 (249)
Q Consensus        13 ~~~~~~~~~~~~~----l~~~~~~~p~~~--~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p---------~~~G~e   77 (249)
                      ++||++++.+++.    +++++.|.|.|+  ++||||||++++||++|+.++.|.+..  ...+|         .++|||
T Consensus         2 ~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~~~~~~~p~~i~G~E   79 (364)
T 1gu7_A            2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS--KPAKTTGFGTTEPAAPCGNE   79 (364)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSC--CCCCBSTTCCSSCBEECCSC
T ss_pred             ceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCC--CCCCCccccccCcccccCce
Confidence            4588888988764    899999988877  999999999999999999998875421  12345         899999


Q ss_pred             eEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCC------
Q 025712           78 CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD------  151 (249)
Q Consensus        78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------  151 (249)
                      ++|+|+++|+++++|++||+|++.+                           ...|+|+||+.++.+.++++|+      
T Consensus        80 ~~G~V~~vG~~v~~~~vGdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~  132 (364)
T 1gu7_A           80 GLFEVIKVGSNVSSLEAGDWVIPSH---------------------------VNFGTWRTHALGNDDDFIKLPNPAQSKA  132 (364)
T ss_dssp             CEEEEEEECTTCCSCCTTCEEEESS---------------------------SCCCCSBSEEEEEGGGEEEECCHHHHHH
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEecC---------------------------CCCCcchheEecCHHHeEEcCCcccccc
Confidence            9999999999999999999998652                           1469999999999999999998      


Q ss_pred             -----CCChhhhcccc-chHHHHHHHHH-cCCCCC-CeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhH----HHH
Q 025712          152 -----NVSLEEGAMCE-PLSVGVHACRR-ANVGPE-TNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQR----LSI  218 (249)
Q Consensus       152 -----~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g-~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~----~~~  218 (249)
                           ++++++|++++ .+.+||+++.. .++++| ++|||+|+ |++|++++|+|+.+|+ ++|++.++.++    +++
T Consensus       133 ~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~  211 (364)
T 1gu7_A          133 NGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVAS  211 (364)
T ss_dssp             TTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHH
T ss_pred             ccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHH
Confidence                 89999999887 57899999977 689999 99999985 9999999999999999 67777655544    688


Q ss_pred             HHHcCCCEEecCCCC-cccHHHHHHHHH
Q 025712          219 ARNLGADETAKVSTD-IEMWGRYKMQWV  245 (249)
Q Consensus       219 ~~~~ga~~vi~~~~~-~~~~~~~~~~~~  245 (249)
                      ++++|+++++|+++. .+++.+.+++++
T Consensus       212 ~~~lGa~~vi~~~~~~~~~~~~~i~~~t  239 (364)
T 1gu7_A          212 LKELGATQVITEDQNNSREFGPTIKEWI  239 (364)
T ss_dssp             HHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             HHhcCCeEEEecCccchHHHHHHHHHHh
Confidence            899999999987631 157888888877

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=4.9e-35  Score=256.09  Aligned_cols=191  Identities=20%  Similarity=0.233  Sum_probs=164.6

Q ss_pred             CcccceEEEEecCCC----eEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEec
Q 025712           11 DKNQNMAAWLLGIKT----LKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVG   86 (249)
Q Consensus        11 ~~~~~~~~~~~~~~~----l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG   86 (249)
                      |+.+||++++.+++.    +++++.|.|+|+++||||||.+++||++|+..+.|.+.  ....+|.++|||++|+|+++|
T Consensus        23 m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~~~P~v~G~E~~G~V~~vG  100 (357)
T 1zsy_A           23 MPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYG--LLPELPAVGGNEGVAQVVAVG  100 (357)
T ss_dssp             CCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSS--CCCCSSEECCSCCEEEEEEEC
T ss_pred             CchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCC--CCCCCCccccceEEEEEEEeC
Confidence            445688888888775    89999999999999999999999999999999887542  113579999999999999999


Q ss_pred             CCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chH
Q 025712           87 SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLS  165 (249)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~  165 (249)
                      +++++|++||+|+..+.                           ..|+|+||+.++.+.++++|+++++++|++++ ...
T Consensus       101 ~~v~~~~vGdrV~~~~~---------------------------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~  153 (357)
T 1zsy_A          101 SNVTGLKPGDWVIPANA---------------------------GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPC  153 (357)
T ss_dssp             TTCCSCCTTCEEEESSS---------------------------CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHH
T ss_pred             CCCCCCCCCCEEEEcCC---------------------------CCccceeEEecCHHHcEECCCCCCHHHHhhhcccHH
Confidence            99999999999986521                           35999999999999999999999999999876 567


Q ss_pred             HHHHHHHH-cCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCCEEecCC
Q 025712          166 VGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGADETAKVS  231 (249)
Q Consensus       166 ~a~~~l~~-~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~~vi~~~  231 (249)
                      +||+++.. +++++|++|||+|+ |++|++++|+||.+|+ ++|++.++.    +++++++++|+++++|++
T Consensus       154 ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~  224 (357)
T 1zsy_A          154 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEE  224 (357)
T ss_dssp             HHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHH
T ss_pred             HHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecC
Confidence            99999854 78999999999985 9999999999999999 555554432    367889999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=8.3e-35  Score=252.32  Aligned_cols=202  Identities=25%  Similarity=0.325  Sum_probs=172.0

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.++   +.+++++.|.|+|+++||||||.+++||++|+.++.|.+.......+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            577777754   46999999999999999999999999999999988874311110357999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhh--hcccc-chHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE--GAMCE-PLSVGV  168 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~--aa~~~-~~~~a~  168 (249)
                      |++||+|+..+.                           ..|+|+||+.++.+.++++|+++++++  |+.+. ++.+||
T Consensus        82 ~~~GdrV~~~~~---------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~  134 (333)
T 1wly_A           82 FTVGERVCTCLP---------------------------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ  134 (333)
T ss_dssp             CCTTCEEEECSS---------------------------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecC---------------------------CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHH
Confidence            999999975420                           269999999999999999999999999  66555 788999


Q ss_pred             HHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          169 HACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       169 ~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      +++. ..++++|+++||+| +|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+++  +++.+.+.+.++
T Consensus       135 ~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~i~~~~~  211 (333)
T 1wly_A          135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST--QDFAEVVREITG  211 (333)
T ss_dssp             HHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHHT
T ss_pred             HHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC--HHHHHHHHHHhC
Confidence            9996 68899999999998 69999999999999999 8999999999999999999999998876  678888877653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.2e-34  Score=254.25  Aligned_cols=198  Identities=20%  Similarity=0.244  Sum_probs=172.5

Q ss_pred             cccceEEEEecCC-----CeEE-EEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEe
Q 025712           12 KNQNMAAWLLGIK-----TLKI-QPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV   85 (249)
Q Consensus        12 ~~~~~~~~~~~~~-----~l~~-~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~v   85 (249)
                      ..+||++++.+++     .+++ +++|.|+|+++||||||.+++||++|+.++.|.+..  ...+|.++|||++|+|+++
T Consensus        21 ~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~i~G~E~~G~V~~v   98 (362)
T 2c0c_A           21 QSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP--SVKPPFDIGFEGIGEVVAL   98 (362)
T ss_dssp             CCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT--TCCSCEECCSEEEEEEEEE
T ss_pred             hhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC--CCCCCCCCCceeEEEEEEE
Confidence            3458888888764     4889 999999999999999999999999999988875421  2467999999999999999


Q ss_pred             cCCCC-CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccch
Q 025712           86 GSEVK-SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL  164 (249)
Q Consensus        86 G~~v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~  164 (249)
                      |++++ +|++||+|+..                             ..|+|+||+.++.+.++++|+. ..+.|++..++
T Consensus        99 G~~V~~~~~vGdrV~~~-----------------------------~~G~~aey~~v~~~~~~~~P~~-~~~aaal~~~~  148 (362)
T 2c0c_A           99 GLSASARYTVGQAVAYM-----------------------------APGSFAEYTVVPASIATPVPSV-KPEYLTLLVSG  148 (362)
T ss_dssp             CTTGGGTCCTTCEEEEE-----------------------------CSCCSBSEEEEEGGGCEECSSS-CHHHHTTTTHH
T ss_pred             CCCccCCCCCCCEEEEc-----------------------------cCCcceeEEEEcHHHeEECCCC-chHhhcccchH
Confidence            99999 99999999865                             3599999999999999999986 45555555578


Q ss_pred             HHHHHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          165 SVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       165 ~~a~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      .+||+++. .+++++|++|||+| +|++|++++|+++..|+ +|++++++++++++++++|+++++|+++  +++.+.++
T Consensus       149 ~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~~~  225 (362)
T 2c0c_A          149 TTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT--EPVGTVLK  225 (362)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC--hhHHHHHH
Confidence            89999984 57899999999998 79999999999999999 8999999999999999999999999876  67777776


Q ss_pred             HH
Q 025712          243 QW  244 (249)
Q Consensus       243 ~~  244 (249)
                      +.
T Consensus       226 ~~  227 (362)
T 2c0c_A          226 QE  227 (362)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1e-34  Score=251.08  Aligned_cols=198  Identities=23%  Similarity=0.213  Sum_probs=173.9

Q ss_pred             ceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.++   +.+++++.|.|+|+++||||||.+++||++|+..+.|.+.   ...+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~   78 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKH   78 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC---CCCCCCCCCceeEEEEEEECCCCCC
Confidence            577777754   4699999999999999999999999999999999887541   1357999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~  170 (249)
                      |++||+|. .+.                          ...|+|+||+.++.+.++++|+++++++|+.+. ++.+||++
T Consensus        79 ~~~GdrV~-~~g--------------------------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  131 (327)
T 1qor_A           79 IKAGDRVV-YAQ--------------------------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYL  131 (327)
T ss_dssp             CCTTCEEE-ESC--------------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEE-ECC--------------------------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHH
Confidence            99999994 310                          135999999999999999999999999987554 78899999


Q ss_pred             HH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          171 CR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       171 l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +. .+++++|+++||+| +|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+++  +++.+.+.+.+
T Consensus       132 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~  205 (327)
T 1qor_A          132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE--EDLVERLKEIT  205 (327)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC--ccHHHHHHHHh
Confidence            96 68999999999998 79999999999999999 8999999999999999999999998875  67877777665

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.1e-34  Score=248.77  Aligned_cols=191  Identities=17%  Similarity=0.196  Sum_probs=163.8

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ||++++.+++   .++++++|.|+|+++||||||++++||++|+..+.|.+.  ....+|.++|||++|+|+++|  +++
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~~G--v~~   76 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGK--IIRHFPMIPGIDFAGTVHASE--DPR   76 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTT--CCCSSSBCCCSEEEEEEEEES--STT
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCC--CCCCCCccccceeEEEEEEeC--CCC
Confidence            6888888765   489999999999999999999999999999999987542  224789999999999999998  678


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHA  170 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~~  170 (249)
                      |++||+|++.+   |      ..             +....|+|+||+.++.++++++|+++++++|++++. +.+||.+
T Consensus        77 ~~vGdrV~~~~---~------~~-------------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a  134 (324)
T 3nx4_A           77 FHAGQEVLLTG---W------GV-------------GENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLC  134 (324)
T ss_dssp             CCTTCEEEEEC---T------TB-------------TTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcc---c------cc-------------CCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHH
Confidence            99999999753   1      00             113579999999999999999999999999998874 6688877


Q ss_pred             H---HHcCCCCCC-eEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          171 C---RRANVGPET-NVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       171 l---~~~~~~~g~-~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +   .+.++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+++
T Consensus       135 l~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  200 (324)
T 3nx4_A          135 VMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE  200 (324)
T ss_dssp             HHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG
T ss_pred             HHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC
Confidence            6   446677643 4999985 9999999999999999 8999999999999999999999998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.4e-33  Score=244.80  Aligned_cols=194  Identities=17%  Similarity=0.107  Sum_probs=167.3

Q ss_pred             cccceEEEEe-------cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccc----eEE
Q 025712           12 KNQNMAAWLL-------GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHE----CAG   80 (249)
Q Consensus        12 ~~~~~~~~~~-------~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e----~~G   80 (249)
                      .++|+++++.       +++.++++++|.|+|+++||||||++++||++|...+.+..    ....|.++|||    ++|
T Consensus         5 ~~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~----~~~~p~~~G~e~g~~~~G   80 (336)
T 4b7c_A            5 SQINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDAR----SYIPPVGIGEVMRALGVG   80 (336)
T ss_dssp             -CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSC----CSSCCCCTTSBCCCEEEE
T ss_pred             cccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccc----ccCCCCCCCcccCCceEE
Confidence            3557788886       46799999999999999999999999999999988776532    13457777777    899


Q ss_pred             EEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhh--
Q 025712           81 IIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG--  158 (249)
Q Consensus        81 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a--  158 (249)
                      +|++.  ++++|++||+|+..                               |+|+||+.++.+.++++|+++++.++  
T Consensus        81 ~V~~~--~v~~~~vGdrV~~~-------------------------------G~~aey~~v~~~~~~~~P~~~~~~~~a~  127 (336)
T 4b7c_A           81 KVLVS--KHPGFQAGDYVNGA-------------------------------LGVQDYFIGEPKGFYKVDPSRAPLPRYL  127 (336)
T ss_dssp             EEEEE--CSTTCCTTCEEEEE-------------------------------CCSBSEEEECCTTCEEECTTTSCGGGGG
T ss_pred             EEEec--CCCCCCCCCEEecc-------------------------------CCceEEEEechHHeEEcCCCCCchHHHh
Confidence            99994  58899999999853                               89999999999999999999976665  


Q ss_pred             ccc-cchHHHHHHH-HHcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCCEEecCCCCc
Q 025712          159 AMC-EPLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDI  234 (249)
Q Consensus       159 a~~-~~~~~a~~~l-~~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~~vi~~~~~~  234 (249)
                      +.+ .++.+||+++ +..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++++ +++|+++++|+++  
T Consensus       128 a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~--  204 (336)
T 4b7c_A          128 SALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN--  204 (336)
T ss_dssp             TTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT--
T ss_pred             hhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC--
Confidence            433 4788999999 7789999999999985 9999999999999999 899999999999999 8999999999876  


Q ss_pred             ccHHHHHHHHH
Q 025712          235 EMWGRYKMQWV  245 (249)
Q Consensus       235 ~~~~~~~~~~~  245 (249)
                      +++.+.+.+++
T Consensus       205 ~~~~~~~~~~~  215 (336)
T 4b7c_A          205 EDLAAGLKREC  215 (336)
T ss_dssp             SCHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            78888887764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3e-33  Score=241.96  Aligned_cols=193  Identities=18%  Similarity=0.170  Sum_probs=163.3

Q ss_pred             ccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           13 NQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        13 ~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      .+||++++.+++   .+++++.|.|+|+++||||||.+++||++|+..+.|.+.  ....+|.++|||++|+|++.  ++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGK--IVKTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGS--SCCSSSBCCCSEEEEEEEEC--CS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCC--CCCCCCcccCcceEEEEEec--CC
Confidence            358888888776   789999999999999999999999999999998877532  12357999999999999995  56


Q ss_pred             CCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHH
Q 025712           90 KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGV  168 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~  168 (249)
                      ++|++||+|++.+.                     ..+ ....|+|+||+.++.+.++++|+++++++|++++. ..++|
T Consensus        78 ~~~~vGdrV~~~~~---------------------~~g-~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~  135 (328)
T 1xa0_A           78 PRFREGDEVIATGY---------------------EIG-VTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAA  135 (328)
T ss_dssp             SSCCTTCEEEEEST---------------------TBT-TTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEccc---------------------cCC-CCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHH
Confidence            88999999986521                     001 12469999999999999999999999999998774 55777


Q ss_pred             HHH---HHcCCCCCC-eEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          169 HAC---RRANVGPET-NVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       169 ~~l---~~~~~~~g~-~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      .++   ++.++++|+ +|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|+++++|+++
T Consensus       136 ~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~  203 (328)
T 1xa0_A          136 LSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLARED  203 (328)
T ss_dssp             HHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC-
T ss_pred             HHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC
Confidence            665   457889996 9999994 9999999999999999 6999999999999999999999998775

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=6.6e-33  Score=242.51  Aligned_cols=201  Identities=17%  Similarity=0.115  Sum_probs=170.0

Q ss_pred             CcccceEEEE-ecC--------CCeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhccc--ccccCCCCCceeccce
Q 025712           11 DKNQNMAAWL-LGI--------KTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMR--CANFIVKKPMVIGHEC   78 (249)
Q Consensus        11 ~~~~~~~~~~-~~~--------~~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~--~~~~~~~~p~~~G~e~   78 (249)
                      ++++||++++ ..+        +.++++++|.|.| +++||||||.+++||++|+..+.+..  ....+..+|.++|||+
T Consensus         5 ~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~   84 (357)
T 2zb4_A            5 AAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGG   84 (357)
T ss_dssp             -CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEE
T ss_pred             ccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccE
Confidence            3456889888 444        5799999999999 99999999999999999987766421  0111245788999999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCC-----
Q 025712           79 AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV-----  153 (249)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~-----  153 (249)
                      +|+|++  +++++|++||+|++.                              .|+|+||+.++.+.++++|+++     
T Consensus        85 ~G~V~~--~~v~~~~vGdrV~~~------------------------------~G~~aey~~v~~~~~~~iP~~~~~~~~  132 (357)
T 2zb4_A           85 IGIIEE--SKHTNLTKGDFVTSF------------------------------YWPWQTKVILDGNSLEKVDPQLVDGHL  132 (357)
T ss_dssp             EEEEEE--ECSTTCCTTCEEEEE------------------------------EEESBSEEEEEGGGCEECCGGGGTTCG
T ss_pred             EEEEEe--cCCCCCCCCCEEEec------------------------------CCCcEEEEEEchHHceecCcccccCch
Confidence            999999  889999999999864                              3899999999999999999998     


Q ss_pred             ChhhhccccchHHHHHHH-HHcCCCCC--CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEe
Q 025712          154 SLEEGAMCEPLSVGVHAC-RRANVGPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETA  228 (249)
Q Consensus       154 ~~~~aa~~~~~~~a~~~l-~~~~~~~g--~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi  228 (249)
                      +++.|++..++.+||+++ +..++++|  +++||+| +|++|++++|+++..|+.+|+++++++++++.+++ +|+++++
T Consensus       133 ~~~~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~  212 (357)
T 2zb4_A          133 SYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAI  212 (357)
T ss_dssp             GGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEE
T ss_pred             hHHHHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEE
Confidence            666455555789999999 77899999  9999998 59999999999999999779999999999999987 9999999


Q ss_pred             cCCCCcccHHHHHHHHH
Q 025712          229 KVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       229 ~~~~~~~~~~~~~~~~~  245 (249)
                      |+++  +++.+.+.+.+
T Consensus       213 d~~~--~~~~~~~~~~~  227 (357)
T 2zb4_A          213 NYKK--DNVAEQLRESC  227 (357)
T ss_dssp             ETTT--SCHHHHHHHHC
T ss_pred             ecCc--hHHHHHHHHhc
Confidence            9876  67877777654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2.6e-33  Score=242.58  Aligned_cols=194  Identities=18%  Similarity=0.239  Sum_probs=163.8

Q ss_pred             CcccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           11 DKNQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        11 ~~~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      |+.+||++++.+++   .+++++.|.|+|+++||||||++++||++|+..+.|.+.  ....+|.++|||++|+|+++  
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~i~G~E~~G~V~~~--   76 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGN--IVREYPLILGIDAAGTVVSS--   76 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCT--TCSSCSEECCSEEEEEEEEC--
T ss_pred             CCCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCC--CcCCCCccccceEEEEEEEc--
Confidence            34568888888765   799999999999999999999999999999998877431  12357999999999999996  


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHH
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSV  166 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~  166 (249)
                      ++++|++||+|++.+.                     ..+ ....|+|+||+.++++.++++|+++++++|++++. ..+
T Consensus        77 ~v~~~~vGdrV~~~~~---------------------~~g-~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~t  134 (330)
T 1tt7_A           77 NDPRFAEGDEVIATSY---------------------ELG-VSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFT  134 (330)
T ss_dssp             SSTTCCTTCEEEEEST---------------------TBT-TTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEccc---------------------ccC-CCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHH
Confidence            4688999999986521                     001 12469999999999999999999999999998774 557


Q ss_pred             HHHHH---HHcCCCCCC-eEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          167 GVHAC---RRANVGPET-NVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       167 a~~~l---~~~~~~~g~-~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +|.++   ++.++++|+ +|||+|+ |++|++++|+|+.+|+ ++++++++++++++++++|+++++|++
T Consensus       135 a~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~  203 (330)
T 1tt7_A          135 AALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRE  203 (330)
T ss_dssp             HHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHH
T ss_pred             HHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECC
Confidence            77665   457889996 9999995 9999999999999999 699999999999999999999999865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.97  E-value=8e-31  Score=224.29  Aligned_cols=174  Identities=25%  Similarity=0.351  Sum_probs=153.5

Q ss_pred             ceEEEEecCCCe-EEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIKTL-KIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~~l-~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++.. .+++.|.|+|+++||||||++++||++|+..+.|.+..  ...+|.++|||++|+|+          
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~----------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVVE----------   68 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEET----------
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcccceEEEEEE----------
Confidence            577888877643 56799999999999999999999999999998875421  13579999999999998          


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                       ||+|+..+                            ..|+|+||+.++.+.++++|+++++++|+.+. ++.+||+++.
T Consensus        69 -GdrV~~~~----------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~  119 (302)
T 1iz0_A           69 -GRRYAALV----------------------------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALK  119 (302)
T ss_dssp             -TEEEEEEC----------------------------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHH
T ss_pred             -CcEEEEec----------------------------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHH
Confidence             99998752                            45999999999999999999999999987666 7889999995


Q ss_pred             -HcCCCCCCeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          173 -RANVGPETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       173 -~~~~~~g~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                       .. +++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++|+++++|++
T Consensus       120 ~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~  178 (302)
T 1iz0_A          120 RAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA  178 (302)
T ss_dssp             HTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred             Hhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence             56 999999999985 9999999999999999 899999999999999999999999865

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.97  E-value=2.4e-31  Score=253.56  Aligned_cols=191  Identities=19%  Similarity=0.239  Sum_probs=165.9

Q ss_pred             eEEEEec---CCCeEEEEecC--CCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           16 MAAWLLG---IKTLKIQPYHL--PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        16 ~~~~~~~---~~~l~~~~~~~--p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      .++.+..   ++.|++++.+.  |+|+++||+|||++++||++|+.++.|.+      ..|.++|||++|+|+++|++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~------~~~~~lG~E~aG~V~~vG~~V~  284 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMY------PGVASLGSEGAGVVVETGPGVT  284 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCC------SSCCCSCCCEEEEEEEECSSCC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCC------CCCccccceeEEEEEEeCCCCC
Confidence            4555553   45789988774  57899999999999999999999887753      3466899999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~  169 (249)
                      +|++||+|+.+                             ..|+|++|+.++.+.++++|+++++++|++++. +.++|+
T Consensus       285 ~~~vGDrV~~~-----------------------------~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~  335 (795)
T 3slk_A          285 GLAPGDRVMGM-----------------------------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYY  335 (795)
T ss_dssp             SSCTTCEEEEC-----------------------------CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEE-----------------------------ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHH
Confidence            99999999865                             469999999999999999999999999998874 778998


Q ss_pred             HH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          170 AC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       170 ~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++ +.+++++|++|||+| +|++|++++|+||.+|+ +|+++.+++ |.++++ +|+++++|+++  .+|.+.++++|+
T Consensus       336 al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~--~~~~~~i~~~t~  409 (795)
T 3slk_A          336 ALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT--CDFEQQFLGATG  409 (795)
T ss_dssp             CCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS--STHHHHHHHHSC
T ss_pred             HHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC--hhHHHHHHHHcC
Confidence            87 668999999999998 69999999999999999 788887655 767776 99999998776  789999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.97  E-value=1.1e-29  Score=221.02  Aligned_cols=198  Identities=13%  Similarity=0.063  Sum_probs=157.8

Q ss_pred             ccceEEEEe-----cCC--CeEEE--EecCCC-CCCCcEEEEEeEEecccchHhhHhccccccc-CCCCCceeccceEEE
Q 025712           13 NQNMAAWLL-----GIK--TLKIQ--PYHLPT-LGPQDVKVRIKALGICGSDVHHFKTMRCANF-IVKKPMVIGHECAGI   81 (249)
Q Consensus        13 ~~~~~~~~~-----~~~--~l~~~--~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~~~G~e~~G~   81 (249)
                      ++||++++.     +|+  .++++  +++.|. |+++||||||.++++|+.|. ...+.+.... ...+|+++|||++|+
T Consensus         3 ~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~   81 (345)
T 2j3h_A            3 ATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGY   81 (345)
T ss_dssp             EEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEE
T ss_pred             ccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecc
Confidence            345555543     566  69998  888886 89999999999999998875 3444321100 024689999999999


Q ss_pred             EEE--ecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc--eEECCC---CCC
Q 025712           82 IEE--VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL--CYKLPD---NVS  154 (249)
Q Consensus        82 V~~--vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~ip~---~~~  154 (249)
                      +++  +|+++++|++||+|+..                               |+|+||+.++.+.  ++++|+   +++
T Consensus        82 ~~~GvV~~~v~~~~vGdrV~~~-------------------------------g~~aey~~v~~~~~~~~~ip~~~~~~~  130 (345)
T 2j3h_A           82 GVSRIIESGHPDYKKGDLLWGI-------------------------------VAWEEYSVITPMTHAHFKIQHTDVPLS  130 (345)
T ss_dssp             EEEEEEEECSTTCCTTCEEEEE-------------------------------EESBSEEEECCCTTTCEEECCCSSCTT
T ss_pred             eEEEEEecCCCCCCCCCEEEee-------------------------------cCceeEEEecccccceeecCCCCCCHH
Confidence            999  99999999999999853                               8899999998876  999996   355


Q ss_pred             hhhhccccchHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCEEecCC
Q 025712          155 LEEGAMCEPLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVS  231 (249)
Q Consensus       155 ~~~aa~~~~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~vi~~~  231 (249)
                      ++.|++..++.+||+++ +..++++|++|||+| +|++|++++|+++..|+ +|++++++++++++++ ++|+++++|++
T Consensus       131 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~  209 (345)
T 2j3h_A          131 YYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYK  209 (345)
T ss_dssp             GGGTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETT
T ss_pred             HHHHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecC
Confidence            55444444788999999 568999999999998 59999999999999999 8999999999999998 79999999877


Q ss_pred             CCcccHHHHHHHH
Q 025712          232 TDIEMWGRYKMQW  244 (249)
Q Consensus       232 ~~~~~~~~~~~~~  244 (249)
                      +. +++.+.+.+.
T Consensus       210 ~~-~~~~~~~~~~  221 (345)
T 2j3h_A          210 EE-SDLTAALKRC  221 (345)
T ss_dssp             SC-SCSHHHHHHH
T ss_pred             CH-HHHHHHHHHH
Confidence            52 3666666654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=3.3e-29  Score=217.03  Aligned_cols=192  Identities=14%  Similarity=0.098  Sum_probs=159.9

Q ss_pred             cccceEEEEec-------CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEE
Q 025712           12 KNQNMAAWLLG-------IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE   84 (249)
Q Consensus        12 ~~~~~~~~~~~-------~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~   84 (249)
                      +++|+++++.+       ++.+++++.|.|+|+++||||||++++||+.|..+ .      .+...|.++|||++|+|++
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~------~~~~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S------KRLKEGAVMMGQQVARVVE   77 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T------TTCCTTSBCCCCEEEEEEE
T ss_pred             cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c------CcCCCCcccccceEEEEEe
Confidence            34578888765       25699999999999999999999999999988632 1      1245688999999999999


Q ss_pred             ecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCC----CChhhh-c
Q 025712           85 VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN----VSLEEG-A  159 (249)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~----~~~~~a-a  159 (249)
                      .  ++++|++||+|+..                               |+|+||+.++.+.++++|++    ++++++ +
T Consensus        78 ~--~v~~~~vGdrV~~~-------------------------------g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a  124 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLAQ-------------------------------SGWTTHFISDGKGLEKLLTEWPDKLPLSLALG  124 (333)
T ss_dssp             E--SCTTSCTTCEEEEC-------------------------------CCSBSEEEESSTTEEECC--CCTTSCGGGGGT
T ss_pred             c--CCCCCCCCCEEEec-------------------------------CceEEEEEechHHeEEcCcccccCCCHHHHHH
Confidence            5  57889999999843                               89999999999999999997    777763 4


Q ss_pred             -cccchHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCccc
Q 025712          160 -MCEPLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEM  236 (249)
Q Consensus       160 -~~~~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~  236 (249)
                       +..++.+||+++ +..++++|+++||+| +|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+++. ++
T Consensus       125 ~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~-~~  202 (333)
T 1v3u_A          125 TIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTV-NS  202 (333)
T ss_dssp             TTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSC-SC
T ss_pred             HhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCCH-HH
Confidence             444788999998 568899999999998 59999999999999999 89999999999999999999999987642 46


Q ss_pred             HHHHHHHHH
Q 025712          237 WGRYKMQWV  245 (249)
Q Consensus       237 ~~~~~~~~~  245 (249)
                      +.+.+.+.+
T Consensus       203 ~~~~~~~~~  211 (333)
T 1v3u_A          203 LEEALKKAS  211 (333)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            766666543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.87  E-value=6.6e-22  Score=206.24  Aligned_cols=182  Identities=18%  Similarity=0.175  Sum_probs=153.5

Q ss_pred             CCeEEEEecCCC-CC--CCcEEEEEeEEecccchHhhHhccccccc----CCCCCceeccceEEEEEEecCCCCCCCCCC
Q 025712           24 KTLKIQPYHLPT-LG--PQDVKVRIKALGICGSDVHHFKTMRCANF----IVKKPMVIGHECAGIIEEVGSEVKSLEVGD   96 (249)
Q Consensus        24 ~~l~~~~~~~p~-~~--~~eVlV~v~~~~i~~~D~~~~~~~~~~~~----~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   96 (249)
                      +.+.+.+.+... +.  ++||+|||.++++|+.|+.+..|.+....    ....|.++|+|++|+|.          +||
T Consensus      1542 ~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGd 1611 (2512)
T 2vz8_A         1542 SSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGR 1611 (2512)
T ss_dssp             TSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSC
T ss_pred             CceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCC
Confidence            467788776543 33  79999999999999999998887643211    12346789999999873          799


Q ss_pred             eEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHH-HHc
Q 025712           97 RVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRA  174 (249)
Q Consensus        97 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~  174 (249)
                      +|+.+.                            ..|+|++|+.++.+.++++|+++++++|++++ .+.+||+++ +.+
T Consensus      1612 rV~g~~----------------------------~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a 1663 (2512)
T 2vz8_A         1612 RVMGMV----------------------------PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRG 1663 (2512)
T ss_dssp             CEEEEC----------------------------SSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTT
T ss_pred             EEEEee----------------------------cCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHh
Confidence            998651                            35999999999999999999999999999888 578999998 568


Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH----cCCCEEecCCCCcccHHHHHHHHHH
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~----~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      ++++|++|||+| +|++|++++|+||+.|+ +|++++++++|.+++++    +|+++++++++  .++.+.+++.|+
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~--~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD--TSFEQHVLRHTA 1737 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS--SHHHHHHHHTTT
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC--HHHHHHHHHhcC
Confidence            899999999997 69999999999999999 89999999999999986    78999998776  788888887654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.41  E-value=5.7e-13  Score=106.31  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=76.3

Q ss_pred             CceEECCCCCChhhhcccc-chHHHHHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          144 KLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       144 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +.++++|+++++++|++++ ++.+||+++. ..++++|+++||+| +|++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999876 7889999985 47899999999998 79999999999999999 8999999999999999


Q ss_pred             HcCCCEEecCCCCcccHHHHHHHHH
Q 025712          221 NLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       221 ~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ++|+++++|+++  +++.+.+.+.+
T Consensus        81 ~~g~~~~~d~~~--~~~~~~~~~~~  103 (198)
T 1pqw_A           81 RLGVEYVGDSRS--VDFADEILELT  103 (198)
T ss_dssp             TTCCSEEEETTC--STHHHHHHHHT
T ss_pred             HcCCCEEeeCCc--HHHHHHHHHHh
Confidence            999999988775  56777776654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.57  E-value=5.2e-08  Score=79.68  Aligned_cols=116  Identities=11%  Similarity=0.069  Sum_probs=80.5

Q ss_pred             CCCCCeEEEcc-------CcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhc-----
Q 025712           92 LEVGDRVALEP-------GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-----  159 (249)
Q Consensus        92 ~~~Gd~V~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa-----  159 (249)
                      +++||+|++.+       ...||+|.+|+.|.+..|.....     ..|...      ....++.|+.....+.+     
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-----~~G~~~------~~~~~~~p~~~~~~~~~~~~~~   72 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-----PEGVKI------NGFEVYRPTLEEIILLGFERKT   72 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-----CTTEEE------TTEEEECCCHHHHHHHTSCCSS
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-----CCCCEE------EEEEEeCCCHHHHHHhcCcCCC
Confidence            89999999988       67889999999988877764321     123221      34445555432222222     


Q ss_pred             -cccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          160 -MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       160 -~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                       .+.+. .+...+....++++++||..|+| .|..++.+++. +. ++++++.+++..+.+++.
T Consensus        73 ~~~~~~-~~~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~  132 (248)
T 2yvl_A           73 QIIYPK-DSFYIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKN  132 (248)
T ss_dssp             CCCCHH-HHHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHH
T ss_pred             Ccccch-hHHHHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHH
Confidence             11222 23345577788999999999988 58888999998 66 899999999988888653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.37  E-value=1.2e-09  Score=96.49  Aligned_cols=135  Identities=19%  Similarity=0.270  Sum_probs=100.4

Q ss_pred             ceeccceEEEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCC
Q 025712           72 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        72 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      ...|++.++.|..+|.+++++.+|+.++.-..      ..+            +. .....|++++++......++.+|+
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qv------k~~------------~~-~~~~~G~~~~~~~~~~~~a~~~~k  135 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQV------KKA------------YD-RAARLGTLDEALKIVFRRAINLGK  135 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHH------HHH------------HH-HHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHH------HHH------------HH-HHHHcCCchHHHHHHHHHHhhhhc
Confidence            46899999999999999999999998742100      000            00 001235667777777777888888


Q ss_pred             CCChhhhccccchHHHHHHHHHcC----CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH-HHHHHcCCC
Q 025712          152 NVSLEEGAMCEPLSVGVHACRRAN----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SIARNLGAD  225 (249)
Q Consensus       152 ~~~~~~aa~~~~~~~a~~~l~~~~----~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~-~~~~~~ga~  225 (249)
                      +++.+.++...+..++|.++....    -.+|++++|+|+|++|.++++.++.+|+.+|++++++.++. ++++++|++
T Consensus       136 ~v~~~~~~~~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          136 RAREETRISEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             HHHHHSSTTCSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE
T ss_pred             cCcchhhhcCCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc
Confidence            877777666556667777764322    25899999999999999999999999997899999999886 677778765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.43  E-value=0.00023  Score=61.62  Aligned_cols=47  Identities=32%  Similarity=0.480  Sum_probs=42.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.++++++..
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~  213 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR  213 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCce
Confidence            4899999999999999999999999 8999999999999998776543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.31  E-value=0.00044  Score=60.79  Aligned_cols=49  Identities=29%  Similarity=0.450  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      ++++|+|+|+|.+|++++++++.+|+ .|++++.+.++.+.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~  219 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL  219 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEE
Confidence            58999999999999999999999999 89999999999999999998754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.28  E-value=0.00066  Score=61.09  Aligned_cols=59  Identities=25%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             HHHHHHHHcC--CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          166 VGVHACRRAN--VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       166 ~a~~~l~~~~--~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      ..+.++.+..  ..+|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+.+.++++|++
T Consensus       259 s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          259 SLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             hhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE
Confidence            4455554433  7899999999999999999999999999 899999999998888888874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.26  E-value=0.00044  Score=60.41  Aligned_cols=49  Identities=29%  Similarity=0.500  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      ++++|+|+|+|.+|++++++++.+|+ +|++++.++++.+.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence            68999999999999999999999999 79999999999999999998765

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.16  E-value=0.0013  Score=57.27  Aligned_cols=48  Identities=19%  Similarity=0.411  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~  226 (249)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|+..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~  215 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRI  215 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCee
Confidence            68999999999999999999999999 89999999999988877 77764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.08  E-value=0.00093  Score=58.06  Aligned_cols=48  Identities=27%  Similarity=0.407  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      ++.+|+|+|+|.+|..+++.++.+|+ +|++.+++.++++.++++|++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~  230 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQW  230 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            68999999999999999999999999 8999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.06  E-value=0.0023  Score=55.52  Aligned_cols=51  Identities=27%  Similarity=0.465  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEEec
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAK  229 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~vi~  229 (249)
                      ++++++|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|+....+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~  216 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITL  216 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEe
Confidence            46899999999999999999999999 89999999999888876 77764343

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0013  Score=57.58  Aligned_cols=48  Identities=33%  Similarity=0.519  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      ++.+|+|+|+|.+|+.++++++.+|+ .|++.+.+.++++.++++|++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~  236 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKF  236 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCce
Confidence            67999999999999999999999999 8999999999999999999864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.96  E-value=0.0018  Score=53.50  Aligned_cols=136  Identities=14%  Similarity=0.086  Sum_probs=73.4

Q ss_pred             ecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCC-CCCceeEEEEecCC--ceEECCCCCChhhhccc
Q 025712           85 VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP-TNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMC  161 (249)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~  161 (249)
                      +|+..+.+++||+|+++....+..+..+..+....+. .....-.. ....|...+.++..  .....|+...+.+...-
T Consensus        13 ~~~~~~~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~   91 (277)
T 1o54_A           13 VGKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTH-LGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKR   91 (277)
T ss_dssp             CCCGGGCCCTTCEEEEEETTSCEEEEECCTTCEEEET-TEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC
T ss_pred             cccccCCCCCCCEEEEEECCCcEEEEEEcCCCEEecC-CceEEHHHhcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhccc
Confidence            4566667999999998744333222222322211111 00000000 00123344444443  33444443332222211


Q ss_pred             c---ch-HHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHc
Q 025712          162 E---PL-SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       162 ~---~~-~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .   .. ..+...+....+.++++||-.|+|. |..++.+++..+ ...+++++.+++..+.+++.
T Consensus        92 ~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~  156 (277)
T 1o54_A           92 RTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESN  156 (277)
T ss_dssp             -CCCCCHHHHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred             cCCccCHHHHHHHHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence            0   11 1222344667889999999999877 888889999864 34899999999888887653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.90  E-value=0.0034  Score=44.31  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .+.+++|+|+|.+|...++.+...| . .++++++++++.+.+.+.+...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~   52 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVAT   52 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcE
Confidence            4578999999999999999999999 6 7999999999988887666544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.68  E-value=0.0082  Score=44.28  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      -.++++|.|.|.+|...++.++..|. .+++++.++++.+.+++.|...+
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i   54 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAV   54 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEE
Confidence            35789999999999999999999999 79999999999999988887544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.68  E-value=0.0024  Score=48.06  Aligned_cols=51  Identities=14%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCCE
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE  226 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~~  226 (249)
                      ...++++++|.|+|.+|...++.++..|. .|+++++++++.+.++ +.|+..
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~   66 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFT   66 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcE
Confidence            34678999999999999999999999999 8999999998888776 667653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.59  E-value=0.00089  Score=49.83  Aligned_cols=62  Identities=6%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH-HHHcCCC
Q 025712          163 PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGAD  225 (249)
Q Consensus       163 ~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~-~~~~ga~  225 (249)
                      +..+++.+++......+++++|+|+|.+|.+.++.++..|++ +.+.++++++.+. .+++|.+
T Consensus         5 ~~sv~~~a~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~   67 (144)
T 3oj0_A            5 KVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYE   67 (144)
T ss_dssp             CCSHHHHHHHHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCE
T ss_pred             cccHHHHHHHHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCc
Confidence            345566666554445599999999999999999998889994 8888999888765 5667743

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.56  E-value=0.007  Score=46.65  Aligned_cols=50  Identities=22%  Similarity=0.266  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      .+++++|.|.|.+|...++.++.. |. .|++++.++++.+.+++.|+..+.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~   88 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVIS   88 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEE
Confidence            367899999999999999999998 99 799999999999999888876543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.55  E-value=0.0091  Score=51.40  Aligned_cols=50  Identities=26%  Similarity=0.383  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      -+|+++.|.|.|.+|+.+++.++.+|+ +|++.+.+.++.++.+++|++.+
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v  222 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV  222 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe
Confidence            579999999999999999999999999 78888888777667777887543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.0099  Score=43.65  Aligned_cols=47  Identities=17%  Similarity=0.353  Sum_probs=41.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .++++|.|.|.+|...++.+...|. .|++++.++++.+.+++.|...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~   52 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDA   52 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcE
Confidence            4689999999999999999999999 7999999999999888777543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.32  E-value=0.011  Score=49.45  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.|++++|+|.|.+|.++++.++.+|+ +|++.+++.++.+.++++|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            478999999999999999999999999 899999998887777677754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.07  E-value=0.0078  Score=43.95  Aligned_cols=47  Identities=11%  Similarity=0.309  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      ++++++|.|+|.+|...++.+...|. .+++++.++++.+.+++.|..
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~   51 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH   51 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE
Confidence            35689999999999999999999998 688888888887776665653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.92  E-value=0.022  Score=47.70  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.+++++|+|.|.+|..+++.++.+|+ +|++.+++.++.+.++++|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~  202 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV  202 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            468999999999999999999999999 899999998887777666653

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.88  E-value=0.063  Score=43.25  Aligned_cols=46  Identities=33%  Similarity=0.424  Sum_probs=37.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+. ++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGA   51 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            468899998 79999999988888999 7889988888776554 3563

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.87  E-value=0.035  Score=44.26  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .++++||+| +|.+|...++.+...|+ .|+++++++++.+.+.+.++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCC
Confidence            578999998 69999999999989999 89999999988887766555

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.86  E-value=0.055  Score=44.77  Aligned_cols=47  Identities=30%  Similarity=0.322  Sum_probs=39.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      =+|+++||.| ++++|.+..+.....|+ +|+.+++++++++.+ +++|.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~   75 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGG   75 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC
Confidence            3689999998 68999999999999999 899999999887665 55664

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.85  E-value=0.06  Score=43.86  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=38.3

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ++++||+| ++++|.+..+.....|+ +|+.+++++++.+.+.+-+.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~   47 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERP   47 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCT
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcC
Confidence            37899998 79999999999999999 89999999988887766543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.60  E-value=0.029  Score=50.18  Aligned_cols=47  Identities=26%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      -.|++++|.|+|++|.+.++.++.+|+ +|++++.++.+...+.+.|+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~  309 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGL  309 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCC
Confidence            479999999999999999999999999 89999999888777666554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=95.54  E-value=0.067  Score=45.30  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      .+....+.++++||-.|+|. |..++.+++..|. ..+++++.+++..+.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            44556789999999999877 7888888888763 489999999988888765

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.54  E-value=0.029  Score=49.35  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=40.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ..-.|++++|.|.|.+|..+++.++.+|+ +|++++.++.+.......|
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G  263 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDG  263 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcC
Confidence            34589999999999999999999999999 7999998887665555555

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.52  E-value=0.039  Score=45.06  Aligned_cols=47  Identities=28%  Similarity=0.378  Sum_probs=35.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga~  225 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++ .+.+++.++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAV   74 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCe
Confidence            468899998 79999999888888999 68888777654 4455556643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.51  E-value=0.11  Score=42.54  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~  225 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++++.+.+    ++.|..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~   57 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKE   57 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            589999998 78999998888889999 899999998876544    445643

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.48  E-value=0.07  Score=42.74  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++++||.| +|++|.+.+......|+ +|+++++++++.+.+.+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            57899998 79999999888888999 79999999888766543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.45  E-value=0.097  Score=42.32  Aligned_cols=42  Identities=19%  Similarity=0.345  Sum_probs=35.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||.| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3578999998 79999998888888999 799999988876654

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.41  E-value=0.11  Score=41.65  Aligned_cols=42  Identities=31%  Similarity=0.396  Sum_probs=33.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ++++||+| +|++|.+.++.....|+ +|+++++++++  ..+++|
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~   44 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLG   44 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhC
Confidence            57899998 79999999998888999 78888887766  334455

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.41  E-value=0.032  Score=48.23  Aligned_cols=48  Identities=25%  Similarity=0.311  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga~  225 (249)
                      -.|++|+|.|.|.+|..+++.+...|+ +|++.+.+.++.+ +.+++|++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            578999999999999999999999999 7889998888876 44556764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.41  E-value=0.12  Score=42.01  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.+......|+ +|+++++++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   53 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVV   53 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            478999998 79999999988888999 8999988887766554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.39  E-value=0.015  Score=47.46  Aligned_cols=46  Identities=24%  Similarity=0.182  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .++.+||.+|+|. |..+..+++.. |. .+++++.+++.++.+++.+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~  130 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYP  130 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCC
Confidence            6789999999888 88888999986 66 89999999999999987653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.38  E-value=0.091  Score=42.76  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=34.8

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +|+++||+|+ |  ++|.+..+.....|+ +|+.+++++++.+.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELE   49 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5899999984 5  899999988889999 8999988887765553

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.38  E-value=0.062  Score=43.97  Aligned_cols=51  Identities=27%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~  221 (249)
                      .+....++++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            3466788999999999987 5888888888753 3389999999988887765

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.30  E-value=0.12  Score=41.74  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=35.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.++.....|+ +|+.++++.++.+.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   48 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVH   48 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            578899998 79999998888888899 8999999988766553

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.28  E-value=0.039  Score=48.77  Aligned_cols=49  Identities=22%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ..-.|++++|.|.|.+|..+++.++.+|+ +|++++.++.+.......|+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTC
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCc
Confidence            35689999999999999999999999999 89999887766554444443

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.26  E-value=0.1  Score=42.98  Aligned_cols=41  Identities=24%  Similarity=0.332  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999888888999 788888887765544

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.23  E-value=0.046  Score=44.77  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL   56 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh
Confidence            468999998 79999999998888999 788888887765544

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.18  E-value=0.053  Score=45.12  Aligned_cols=63  Identities=16%  Similarity=0.114  Sum_probs=48.3

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH------------cCCCEEecCCC
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN------------LGADETAKVST  232 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~------------~ga~~vi~~~~  232 (249)
                      +++...+ -.+++++|+|+|+.|.+++..+...|++.+.++.++.+|.+.+.+            +.++.+||.+.
T Consensus       112 ~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l~~DivInaTp  187 (282)
T 3fbt_A          112 MLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNLKGDVIINCTP  187 (282)
T ss_dssp             HHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTCCCSEEEECSS
T ss_pred             HHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhccCCEEEECCc
Confidence            4444333 358999999999999999999999999788888899988765532            25777887653

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=95.12  E-value=0.099  Score=42.83  Aligned_cols=41  Identities=12%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+..+.....|+ .|+.+++++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFL   47 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHH
Confidence            588999998 78999998888888999 788888776654433

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.08  E-value=0.13  Score=41.16  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHH
Confidence            578999998 79999999988888999 799999988776654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=95.08  E-value=0.16  Score=40.93  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~  225 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+ ++++..
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   53 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKK   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            578999998 79999999999999999 799999988876655 345543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=95.08  E-value=0.12  Score=41.72  Aligned_cols=45  Identities=29%  Similarity=0.389  Sum_probs=36.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+. +++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   50 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG   50 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            478999998 79999999998888999 7888988887766543 344

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.03  E-value=0.17  Score=40.95  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=35.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+..++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~   50 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIG   50 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhh
Confidence            478999998 79999999988888999 7888888877644444444

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.03  E-value=0.09  Score=42.64  Aligned_cols=42  Identities=31%  Similarity=0.354  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAK   47 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 79999999988888999 7999999988876654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.02  E-value=0.071  Score=44.11  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=33.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      ..++++||+| +|++|.+.++.....|+ +|++++++.++.+.
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~   51 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHE   51 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4578999998 69999998888888999 89999998877544

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.00  E-value=0.13  Score=41.87  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||+| ++++|.+.++.....|+ +|++++++.++.+.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDV   51 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHH
Confidence            3678999998 79999998888888999 799999988776554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=94.98  E-value=0.13  Score=42.02  Aligned_cols=42  Identities=26%  Similarity=0.253  Sum_probs=35.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   50 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALE   50 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 79999999998888999 7999988887766554

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=94.98  E-value=0.14  Score=41.54  Aligned_cols=45  Identities=20%  Similarity=0.400  Sum_probs=37.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~g  223 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+.+ ++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   53 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG   53 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            578999998 79999999988888999 89999999888766643 44

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.96  E-value=0.11  Score=43.83  Aligned_cols=41  Identities=15%  Similarity=0.315  Sum_probs=35.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   48 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKA   48 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 79999998888888999 799999998876654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.96  E-value=0.16  Score=41.42  Aligned_cols=42  Identities=21%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAV   47 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            468899998 79999999988888999 8999999888776654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.91  E-value=0.066  Score=44.53  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=37.6

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.+++++|+|+|+.|.+++..+...|++++.++.++.++.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4688999999999999999998899997799999998887654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=94.91  E-value=0.13  Score=40.73  Aligned_cols=42  Identities=31%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||.| +|++|.+.++.....|+ .|++++++.++.+.+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   46 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALA   46 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            357899997 79999999988888999 7888988887766553

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.90  E-value=0.13  Score=37.03  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD  225 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~  225 (249)
                      +.+++|.|+|.+|...++.+...|. .|+++++++++.+.+++ +|..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~   50 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL   50 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcE
Confidence            4678999999999999988888998 78899998888877764 4653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.89  E-value=0.14  Score=41.51  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAA   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999888888999 799998888766544

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.88  E-value=0.14  Score=42.61  Aligned_cols=42  Identities=31%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQA   71 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3678999998 79999999988888999 799999988876654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.88  E-value=0.12  Score=42.42  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999888888999 799998888775543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.87  E-value=0.18  Score=40.79  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      .++++||.| ++++|.+.++.....|+ +|+++++++++.+.+. +++.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   55 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGD   55 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            478999998 79999998888888999 7999999988877664 3553

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.85  E-value=0.13  Score=41.98  Aligned_cols=45  Identities=31%  Similarity=0.452  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+ ++++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   56 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVG   56 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhC
Confidence            478999998 79999999988888999 788898888776554 3454

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.85  E-value=0.11  Score=41.68  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ...+++++||+| +|++|.+.++.....|+ +|++++++.++.+.+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   55 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLG   55 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            346789999998 79999999888888999 7999999888876664

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=94.85  E-value=0.15  Score=41.99  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=37.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~g  223 (249)
                      .++++||+| ++++|.+.++.....|+ +|++++++.++.+.+.+ ++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   50 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHG   50 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTB
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcC
Confidence            478999998 79999999998888999 89999999888776644 44

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.82  E-value=0.071  Score=46.82  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      .+.+|+|.|.|.+|+..++.++..|. .|++++.++++.+.+++.|...+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi   51 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVF   51 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEE
Confidence            45679999999999999999999999 79999999999999988886543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.82  E-value=0.13  Score=41.92  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDAC   50 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999997 79999999998888999 899999988776554

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=94.81  E-value=0.21  Score=40.21  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            468899998 79999999888888999 799998888776654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.80  E-value=0.17  Score=41.13  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999998888888999 788998888776544

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.79  E-value=0.15  Score=41.84  Aligned_cols=46  Identities=22%  Similarity=0.385  Sum_probs=37.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+. +++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            578999998 79999998888888999 7999999988876664 4554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.78  E-value=0.13  Score=42.07  Aligned_cols=41  Identities=22%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.+......|+ +|+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578899998 79999999888888999 899999888776544

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.78  E-value=0.19  Score=40.08  Aligned_cols=42  Identities=26%  Similarity=0.299  Sum_probs=35.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++++||+| +|++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   48 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLV   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 69999999998888999 7888888887766543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.78  E-value=0.17  Score=40.68  Aligned_cols=46  Identities=28%  Similarity=0.304  Sum_probs=36.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-hHHH-HHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLS-IARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~-~~~~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++ ++.+ .+++.|.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   54 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGR   54 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCC
Confidence            478899998 79999999988888999 788888876 5544 4455553

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.76  E-value=0.17  Score=40.66  Aligned_cols=41  Identities=32%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRAL   47 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            478999998 79999999888888999 788998888776544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.73  E-value=0.049  Score=45.64  Aligned_cols=49  Identities=16%  Similarity=0.468  Sum_probs=42.5

Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++++++++||.+|+|..+..++.+++..|+ +|++++.+++..+.+++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHH
Confidence            4688999999999998777778888888898 899999999998888653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=94.72  E-value=0.071  Score=46.98  Aligned_cols=48  Identities=29%  Similarity=0.369  Sum_probs=41.0

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .-.|++++|.|.|.+|...++.++.+|+ +|++++.++.+...+...|+
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~  255 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGY  255 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCC
Confidence            3479999999999999999999999999 89999988877766655554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.71  E-value=0.14  Score=41.83  Aligned_cols=41  Identities=22%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++++.+..
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~   49 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAES   49 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            589999997 79999999999999999 899999988775543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.71  E-value=0.17  Score=41.63  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=37.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+. +++.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   73 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGS   73 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            578999998 79999999988888999 8999988887766554 3553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.70  E-value=0.1  Score=42.91  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            478999998 69999999988888999 799999988776654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.70  E-value=0.17  Score=41.70  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++++||+| +|++|.+.++.....|+ +|++++++.++.+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 79999999988888999 8999998887766553

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=94.68  E-value=0.15  Score=41.29  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDC   49 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999888888999 788998888765543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.65  E-value=0.094  Score=41.81  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=37.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcC--CCeEEEEeCChhHHHHHHHc
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++++||+| +|++|.+.++.+...|  + .|++++++.++.+.++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~   48 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSI   48 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhc
Confidence            367899998 7999999998888899  7 899999988887777665

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=94.64  E-value=0.18  Score=40.94  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHH
Confidence            578999998 79999999888888999 788888887665443

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.64  E-value=0.19  Score=40.71  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEA   47 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            478899998 79999999998888999 799998888776543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.64  E-value=0.026  Score=45.93  Aligned_cols=39  Identities=21%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~  217 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+++++++++.+
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~   49 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVH   49 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHh
Confidence            699999998 78999999999999999 8999988776654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.63  E-value=0.15  Score=40.79  Aligned_cols=41  Identities=24%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   46 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKA   46 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 79999999888888999 788898888766554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.63  E-value=0.19  Score=40.76  Aligned_cols=41  Identities=29%  Similarity=0.418  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKA   47 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999998888999 788888888776544

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.60  E-value=0.12  Score=42.51  Aligned_cols=41  Identities=32%  Similarity=0.387  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEET   46 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 79999999888888999 799998888776554

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.57  E-value=0.2  Score=40.67  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAM   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999888888999 788888888776654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.56  E-value=0.27  Score=39.75  Aligned_cols=46  Identities=28%  Similarity=0.392  Sum_probs=37.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+ ++++.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   54 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGP   54 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            578999998 79999999888888999 789998888776655 34543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.56  E-value=0.18  Score=41.17  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.+...|+ +|++++++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            478999998 79999999988888999 799998887766544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.56  E-value=0.2  Score=40.89  Aligned_cols=41  Identities=20%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.+......|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            578999998 79999999988888999 789998888766543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.55  E-value=0.25  Score=40.03  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CCh--HHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGP--IGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~--vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||.| +|.  +|.+.++.....|+ +|++++++++..+.++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   50 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVH   50 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHH
Confidence            578999998 644  99998888888899 7888887765544443

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=94.55  E-value=0.13  Score=41.43  Aligned_cols=42  Identities=19%  Similarity=0.141  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAIS   50 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 79999999998889999 7999999888776654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.53  E-value=0.15  Score=41.89  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=36.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+. +++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   74 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG   74 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC
Confidence            578999997 79999998888888999 8999998887766553 454

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.53  E-value=0.091  Score=43.24  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHc
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL  222 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~  222 (249)
                      ++++++|+|+|++|.++++.+...|+ +|++++++.++.+.+ +++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~  162 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLF  162 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHh
Confidence            68899999999999999999999997 899999998886544 344

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.50  E-value=0.14  Score=42.08  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999998888999 799998888776544

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.50  E-value=0.15  Score=41.37  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAV   52 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999998888888899 799998888776554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.50  E-value=0.19  Score=41.29  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ..++++||+| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999998 79999998888888999 799999988776554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.49  E-value=0.12  Score=42.73  Aligned_cols=50  Identities=16%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++.......+++++|+|+|+.+.+++..+...|+..+.++.++.+|.+.+
T Consensus       110 ~l~~~~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~l  159 (271)
T 1npy_A          110 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL  159 (271)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            34444445678999999999999999999999987888998998876554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.48  E-value=0.083  Score=42.79  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPL   47 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999998888999 799999888776544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.47  E-value=0.27  Score=39.46  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAV   49 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            578999998 79999999888888999 799999988776655

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.47  E-value=0.1  Score=43.13  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+|+|+.|.+++..+...|+..+.++.++.++.+.+
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~l  160 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALAL  160 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            688999999999999999988889987888899998886654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.46  E-value=0.11  Score=41.36  Aligned_cols=41  Identities=24%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++||+| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKI   42 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            367899998 79999999999989999 799998888776554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.42  E-value=0.1  Score=44.13  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC---hhHHHHH
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD---VQRLSIA  219 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~  219 (249)
                      +++.... -.++++||+|+|+.|.+++..+...|++.|.++.++   .++.+.+
T Consensus       144 ~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          144 ALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             HHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             HHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            4444333 368999999999999999999999999778888888   6665544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.38  E-value=0.19  Score=40.96  Aligned_cols=41  Identities=32%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999998889999 799999888776554

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.37  E-value=0.17  Score=40.87  Aligned_cols=40  Identities=13%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   53 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDR   53 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            578999998 79999999988888999 89999888776544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.36  E-value=0.24  Score=39.79  Aligned_cols=40  Identities=30%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   52 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATK   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            478999998 79999999988888999 79999888776543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=94.36  E-value=0.14  Score=41.26  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=36.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+ ++++.
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   52 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGE   52 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            468899998 79999999888888999 799998888776655 33443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=94.30  E-value=0.16  Score=40.97  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.+ ++++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   52 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELG   52 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC----------
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC
Confidence            578999998 79999999988888999 788888877665544 3344

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.27  E-value=0.15  Score=42.41  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=34.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578899998 79999999988888999 799998888776544

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.26  E-value=0.12  Score=41.80  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcC---CCeEEEEeCChhHHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFG---APRIIITDVDVQRLSIARN  221 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G---~~~vi~~~~~~~~~~~~~~  221 (249)
                      -.++++||+| +|++|.+.++.+...|   + +|++++++.++.+.+++
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~   66 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELED   66 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHH
Confidence            4568899998 7999999998888889   7 88888888765444443

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.26  E-value=0.19  Score=41.06  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=38.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~  225 (249)
                      .++++||+| +|++|.+.++.....|+ +|+.+++++++.+.+ ++++..
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKD   74 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            578999998 79999999998889999 788888888876655 445543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.23  E-value=0.12  Score=43.59  Aligned_cols=50  Identities=12%  Similarity=0.136  Sum_probs=38.9

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC---hhHHHHH
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD---VQRLSIA  219 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~---~~~~~~~  219 (249)
                      +++.... -.++++||+|+|+.|.+++..+...|++.+.++.++   .+|.+.+
T Consensus       138 ~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          138 AIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             HHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            3443333 358899999999999999999999999888888888   6555544

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.22  E-value=0.19  Score=40.48  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+ ++++.
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   58 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   58 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCC
Confidence            578999998 79999999998888999 788888877665544 44553

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.22  E-value=0.1  Score=43.57  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=39.4

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      -.+++++|+|+|+.|.+++..+...|+..|.+..++.++.+.+ ++++.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            3688999999999999999999999987899999998886544 44543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.21  E-value=0.11  Score=42.94  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=36.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+.+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~   58 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAAR   58 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            578999998 79999999998888999 89999999888776654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=94.19  E-value=0.41  Score=38.99  Aligned_cols=41  Identities=22%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999998888999 799998888776543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.19  E-value=0.13  Score=41.31  Aligned_cols=41  Identities=32%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRA   51 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999888888999 799998888776554

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.18  E-value=0.12  Score=41.99  Aligned_cols=41  Identities=32%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| ++++|.+.++.....|+ +|++++++.++.+.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAA   48 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478999998 79999999988888999 799999988776554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.13  E-value=0.23  Score=40.30  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=35.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3578999998 79999998888888899 799999988876554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.11  E-value=0.28  Score=39.52  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAV   42 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57899998 79999999988888999 788888888765543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.09  E-value=0.28  Score=39.71  Aligned_cols=44  Identities=16%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          175 NVGPETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       175 ~~~~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ...+++++||+| +  +++|.+.++.....|+ +|+++++++...+.+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRI   56 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHH
Confidence            345789999997 6  8999998888888999 788887775444444

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.06  E-value=0.45  Score=38.92  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            478999998 79999999988888999 79999888876554

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.06  E-value=0.31  Score=39.93  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++...+..++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~   73 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADE   73 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHH
Confidence            578999998 79999999888888999 78888866554444443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.06  E-value=0.11  Score=42.77  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc-----------CCCEEecCCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-----------GADETAKVST  232 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~-----------ga~~vi~~~~  232 (249)
                      +++++|+|+|+.|.+++..+...|. .+.++.++.+|.+.+.++           .++.+||...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATS  181 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEccc
Confidence            8999999999999999999999995 899999998887666444           3566776544

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.03  E-value=0.21  Score=41.44  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 79999999998889999 888898888775544

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.03  E-value=0.15  Score=40.66  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++++||.| +|++|.+.++.....|+ +|++++++.++.+.+.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   48 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLA   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            578999998 79999999998888999 7899988877765543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=94.03  E-value=0.17  Score=41.36  Aligned_cols=45  Identities=22%  Similarity=0.133  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+. +++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   50 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYP   50 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCT
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcc
Confidence            468899998 79999999998888999 8899988887766554 344

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=94.02  E-value=0.22  Score=40.39  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      ..++++||+| +|++|.+.++.....|+ +|+.+ .+++++.+.+
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~   45 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALET   45 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            3578999998 79999999998889999 66665 7777665544

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.99  E-value=0.32  Score=39.15  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .-.++++||+| +|++|.+.++.....|+ +|++++++++.
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~   55 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL   55 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH
Confidence            34688999998 79999999988888999 78888887643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.99  E-value=0.11  Score=42.62  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   44 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAI   44 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            468899998 79999999988888999 799998888776554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=93.99  E-value=0.28  Score=39.46  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~  221 (249)
                      .++++||+| +|++|.+.++.....|++.|+++++++  +..+.+++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~   50 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA   50 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHH
Confidence            478899997 799999999888889995477777765  34444444

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.98  E-value=0.22  Score=40.26  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=34.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ .|+++++++++.+.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNEC   54 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            568899998 79999999998888999 788888887765543

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=93.96  E-value=0.14  Score=41.05  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQEL   46 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            478899998 79999999988888999 788888887765543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=93.96  E-value=0.31  Score=39.91  Aligned_cols=46  Identities=13%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      ..++++||.| +|++|.+.++.....|+ +|++++++.++.+.+. +++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   73 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG   73 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC
Confidence            3578899998 79999999888888999 7999998888766553 344

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.94  E-value=0.15  Score=41.62  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3578999998 79999999988888999 788888887765543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.91  E-value=0.41  Score=39.65  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-CC--hHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SG--PIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|  ++|.+.++.....|+ +|++++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            578999998 45  999998888888999 788888887554444

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.90  E-value=0.36  Score=39.88  Aligned_cols=36  Identities=33%  Similarity=0.399  Sum_probs=30.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            578999998 79999999998888999 7888877654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.88  E-value=0.14  Score=42.44  Aligned_cols=50  Identities=12%  Similarity=0.107  Sum_probs=39.6

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++.... -.+++++|+|+|+.|.+++..+...|+..+.++.++.++.+.+
T Consensus       116 ~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  166 (281)
T 3o8q_A          116 DLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQL  166 (281)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHH
T ss_pred             HHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence            3444333 3688999999999999999888889976888888998886654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.81  E-value=0.1  Score=43.06  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=33.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|+++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAA   73 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 79999999888888999 799999988776554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.80  E-value=0.13  Score=43.21  Aligned_cols=46  Identities=24%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.++ +...++|++
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  186 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGK  186 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCE
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcc
Confidence            57899999999999999999999999 89999888766 455666653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.77  E-value=0.24  Score=40.77  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=35.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   49 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELT   49 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            578999998 79999999988888999 7999998888766553

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.76  E-value=0.16  Score=42.02  Aligned_cols=42  Identities=14%  Similarity=0.364  Sum_probs=35.7

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -+++++||+| +|++|.+++..+...|+ .|++++++.++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            3688999998 89999999999999999 688888887776544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.75  E-value=0.43  Score=38.06  Aligned_cols=41  Identities=22%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+.++++.++.+.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   45 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKF   45 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 79999998888888999 799998888776554

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.75  E-value=0.45  Score=38.90  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            578999998 79999999999989999 78888875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.72  E-value=0.44  Score=38.81  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            578999998 79999999888888999 78888765

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.69  E-value=0.24  Score=39.62  Aligned_cols=40  Identities=18%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++++++.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   50 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            468899998 79999999988888999 79999888776544

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.69  E-value=0.26  Score=42.06  Aligned_cols=37  Identities=35%  Similarity=0.382  Sum_probs=31.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .|+++||.| ++++|.+.++.....|+ +|++++++.++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            578999998 79999999888888999 78888777653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=93.65  E-value=0.28  Score=39.31  Aligned_cols=40  Identities=18%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ ++++.+.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   44 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANE   44 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            468899998 79999999988888999 7888877 6666543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=93.62  E-value=0.15  Score=41.25  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=32.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   41 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDEL   41 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688888 79999999998888999 788888877765544

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.62  E-value=0.31  Score=39.98  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=30.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   64 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANST   64 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            478899998 79999999998888999 7888877654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.62  E-value=0.39  Score=39.27  Aligned_cols=34  Identities=26%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      -.++++||+| ++++|.+.++.....|+ +|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            4678999998 79999999988888999 7888876

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.61  E-value=0.51  Score=38.69  Aligned_cols=41  Identities=27%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      -.++++||+| +|++|.+.++.....|+ +|+++++ ++++.+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   69 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAP   69 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHH
Confidence            4578999998 79999999998889999 7888764 5555443

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.60  E-value=0.37  Score=38.77  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHH-cCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.... .|+ .|++++++.++.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~   44 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQA   44 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHH
Confidence            578899998 79999998877777 899 78888888766544

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.58  E-value=0.49  Score=39.19  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| ++++|.+.++.....|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            578999998 79999999888888999 78888765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.53  E-value=0.2  Score=40.72  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            578999998 79999999998888999 78888888776544

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.49  E-value=0.47  Score=37.66  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||.| +|++|...++.....|+ +|++++++.++.+.+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAV   47 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            468899998 79999999988888999 799998888776544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.48  E-value=0.17  Score=39.57  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      +|||+| +|.+|...++.+...|. .|++++++.++.+.+...+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~   44 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGAT   44 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCC
Confidence            589998 69999999999999999 8999999988877653333

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.47  E-value=0.16  Score=41.45  Aligned_cols=43  Identities=26%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .+|||+|+|.+|...+..+...|. .|+++++++++.+.+...+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~   48 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASG   48 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTT
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCC
Confidence            689999999999999999988999 8999999998887765433

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=93.46  E-value=0.15  Score=41.25  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   45 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVV   45 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 79999999988888999 788888887776544

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.45  E-value=0.18  Score=41.35  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+..
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999998888999 888898887765443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.41  E-value=0.26  Score=39.63  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=32.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ ++++.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANS   47 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHH
Confidence            468899998 79999998888888899 7888887 6665543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.41  E-value=0.31  Score=39.69  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ +++..+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADA   69 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            578999998 79999998888888999 7888877 4444333

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=93.39  E-value=0.26  Score=39.84  Aligned_cols=40  Identities=23%  Similarity=0.275  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH-HHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++ .+.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   44 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEK   44 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHH
Confidence            468899998 79999999988888999 78888887766 443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.36  E-value=0.55  Score=38.30  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            578999998 79999999998889999 78888766

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.36  E-value=0.21  Score=39.97  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC-hhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~  218 (249)
                      .++++||.| +|++|.+.+......|+ +|++++++ .++.+.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDE   47 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHH
Confidence            468899998 79999999888888999 78888877 555443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.36  E-value=0.45  Score=38.97  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| ++++|.+.++.....|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            578999998 79999999888888999 78888765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.35  E-value=0.32  Score=39.65  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ +.++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            578999998 79999999988888999 6777666 5555443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.35  E-value=0.35  Score=39.62  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| ++++|.+.++.....|+ +|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            578999998 79999999988888999 788888877665443

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=93.34  E-value=0.22  Score=39.80  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++++||+| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEET   42 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            57899998 79999999888888999 788898888776554

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=93.33  E-value=0.16  Score=40.24  Aligned_cols=41  Identities=24%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++||.| +|++|.+.+......|+ +|+++++++++.+.+.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~   43 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTN   43 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4689998 79999999998889999 68889999888776654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.31  E-value=0.29  Score=40.33  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| ++++|.+.++.....|+ +|++++++.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            578999998 79999998888888999 7888887765

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=93.27  E-value=0.15  Score=41.49  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNET   50 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            478899998 79999998888888999 799998888765443

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.26  E-value=0.22  Score=41.17  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999998 79999999888888999 788888887765543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.25  E-value=0.73  Score=37.88  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.+......|+ +|++++++.++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            568999998 79999999988888999 799998888766543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=93.24  E-value=0.26  Score=40.09  Aligned_cols=47  Identities=17%  Similarity=0.310  Sum_probs=38.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~ga~  225 (249)
                      .|+++||+| ++++|.+..+.....|+ +|+.++++.  +..+.+++.|..
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~   57 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGN   57 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCc
Confidence            588999997 78999999999999999 788887763  456677777653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.23  E-value=0.16  Score=41.49  Aligned_cols=41  Identities=32%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEET   46 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468899998 79999998888888999 799998888776554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.21  E-value=0.39  Score=35.43  Aligned_cols=41  Identities=10%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC-hhHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD-VQRLSIAR  220 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~~~  220 (249)
                      .++++|.|.|.+|...++.+...|. .|++++.+ +++.+.++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~   44 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLE   44 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHH
Confidence            5678999999999999999999998 68888876 45544443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=93.20  E-value=0.38  Score=38.76  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      ++++||.| +|++|.+.++.....|+ +|++++++.++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   38 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQE   38 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcch
Confidence            57899998 79999998888888899 78888887766

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.18  E-value=0.6  Score=38.57  Aligned_cols=42  Identities=21%  Similarity=0.109  Sum_probs=32.8

Q ss_pred             CCCCeEEEEc-CCh--HHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGP--IGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~--vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.++++||+| +|+  +|.+.++.....|+ +|++++++++..+.+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRV   73 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4678999998 555  99998888888999 788888886544433

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.16  E-value=0.75  Score=37.68  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~  219 (249)
                      .++++||.| +|++|.+.++.....|+ +|+++++ +.++.+.+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~   66 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTV   66 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            468999998 79999999988889999 7888877 54544433

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.13  E-value=0.45  Score=37.68  Aligned_cols=41  Identities=15%  Similarity=0.002  Sum_probs=33.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|.+|...++.+...  |+ .|+++++++++.+.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~   46 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI   46 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc
Confidence            468899998 799999999888888  78 888888887765433

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.10  E-value=0.43  Score=40.01  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=29.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            3578999998 79999998888888999 88888765

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=93.08  E-value=0.26  Score=39.67  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~   42 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFT   42 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            478999998 79999999998888999 7888876643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.06  E-value=0.59  Score=37.75  Aligned_cols=39  Identities=15%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~  217 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++ ++++++.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   47 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAA   47 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            578999998 79999999888888999 67776 55555443

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.05  E-value=0.75  Score=37.10  Aligned_cols=36  Identities=14%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +  |++|.+.++.....|+ +|++++++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            478899998 5  7999998888888899 7888887765

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.02  E-value=0.53  Score=38.40  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLS  217 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~  217 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++ ++.++.+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   70 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQ   70 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            3578999998 79999999888888999 677764 4444443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.01  E-value=0.14  Score=41.97  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|+++||.| +|++|.+.++.....|+ +|++++++.++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 79999999988888999 799998888775544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.99  E-value=0.18  Score=41.49  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+|+|+.|.+++..+...|. +|+++.++.++.+.+
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l  158 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKEL  158 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            57899999999999999888888996 898899998876655

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=92.97  E-value=0.17  Score=39.71  Aligned_cols=39  Identities=15%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHH-HcCCCeEEEEeCChh-HHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDVQ-RLSIA  219 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~-~~G~~~vi~~~~~~~-~~~~~  219 (249)
                      +++||+| +|++|.+.++.+. ..|+ +|++++++++ +.+.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~   47 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPE   47 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhh
Confidence            4699998 7999999888777 8999 8999988888 66555

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.96  E-value=0.29  Score=39.44  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            468899998 79999999988888999 7888877654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.93  E-value=0.51  Score=38.14  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCCeEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGS-G-PIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~-g-~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+|+ | ++|.+.++.....|+ +|++++++.++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            5789999985 6 799998888888899 799998888776554

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.92  E-value=0.61  Score=37.88  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            468899998 79999999888888999 7888888 77765544

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.90  E-value=0.59  Score=38.09  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .++++||+| ++++|.+.++.....|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            578999998 79999999988888999 7888876

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.86  E-value=0.54  Score=38.02  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=29.8

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||+| +  |++|.+.++.....|+ +|+++++++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            468899997 6  7999999888888999 788887776

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.81  E-value=0.34  Score=37.77  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=40.9

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .+....+.++++||-+|+|. |..++.+++. +. ++++++.+++..+.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            45667789999999999876 8888888888 77 89999999998888764

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=92.76  E-value=0.37  Score=39.17  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=30.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   43 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDP   43 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCcc
Confidence            468899998 79999999998888999 7888776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.74  E-value=0.39  Score=37.77  Aligned_cols=44  Identities=16%  Similarity=0.130  Sum_probs=36.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD  225 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~  225 (249)
                      +++|.|+|.+|...++.+...|. .+++++.++++.+.+. +.|..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~   46 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT   46 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe
Confidence            58889999999999999999999 7999999999888764 35543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=92.74  E-value=0.43  Score=38.92  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| ++++|.+.++.....|+ +|++++++.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccch
Confidence            578999998 79999998888888999 7888887754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=92.66  E-value=0.79  Score=37.29  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +  |++|.+.++.....|+ +|++++++++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~   43 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES   43 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            478999998 6  8999999988888999 7888887764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.58  E-value=0.3  Score=40.74  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      -++++|||+| +|.+|...+..+...|. .|++++++.++.+.+.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHH
Confidence            4578999998 69999999988888899 7888888877655443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.56  E-value=0.51  Score=36.39  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ..+....++++++||-+|+|. |..++.+++......+++++.+++..+.+++
T Consensus        31 ~~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           31 VTLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            345667889999999999875 8888889988644589999999998888865

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.54  E-value=0.61  Score=38.99  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=29.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      -.++++||+| +|++|.+.++.....|+ +|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            3578999998 79999999998888999 78888654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=92.54  E-value=0.51  Score=37.40  Aligned_cols=40  Identities=20%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      ++++||+| +|++|...++.....|+ .|+++ +++.++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~   42 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEV   42 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            36789998 79999999988888999 77777 7777765543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=92.52  E-value=0.15  Score=43.69  Aligned_cols=47  Identities=21%  Similarity=0.377  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+.
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCE
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCe
Confidence            58899999999999999999999999 799998876566666666653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=92.51  E-value=0.3  Score=39.01  Aligned_cols=42  Identities=10%  Similarity=0.188  Sum_probs=32.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++||.| +|++|.+.++.... |. .|+++++++++.+.+.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~   46 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAE   46 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHT
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHh
Confidence            468899998 79999987776544 87 79999898888776654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.50  E-value=1  Score=37.04  Aligned_cols=40  Identities=25%  Similarity=0.450  Sum_probs=34.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++|.|+|+|.+|....+.+...|+ .|++.+.++++.+.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~   44 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAK   44 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence            589999999999999999999999 8999999988766554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.49  E-value=0.17  Score=38.95  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      .+++|.| +|.+|...++.+...|. .|+++++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~   40 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRL   40 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhc
Confidence            6899998 69999999998888998 788888876653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.49  E-value=0.26  Score=38.30  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|||+| +|.+|...++.+...|. .|+++++++++.+.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~   40 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQT   40 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhc
Confidence            689998 69999999999999998 899998888776654

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=92.48  E-value=1.1  Score=38.13  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=45.9

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEe
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA  228 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi  228 (249)
                      +...++++++|+..++|..|.+....|+..|.+.++.+..  +..|.+.++.+|++.++
T Consensus        71 ~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  129 (343)
T 2pqm_A           71 KDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL  129 (343)
T ss_dssp             HHTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence            3445577777766678999999999999999977777743  57899999999998765

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=92.47  E-value=0.79  Score=38.17  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=45.3

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ....++++++|+..++|..|++....|+..|.+.++.+..  +..|.+.++.+|++.++.
T Consensus        54 ~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~  113 (303)
T 2v03_A           54 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV  113 (303)
T ss_dssp             HTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence            3344567777776678999999999999999966666643  578999999999876653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.42  E-value=0.8  Score=37.47  Aligned_cols=41  Identities=10%  Similarity=0.038  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++++++.+.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   84 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            468999998 79999998888888899 788888777665543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.35  E-value=0.67  Score=37.63  Aligned_cols=39  Identities=13%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~  217 (249)
                      .++++||+| ++++|.+.++.....|+ +|+++++ +.++.+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~   57 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAE   57 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            578999998 79999999998889999 6777644 444433

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.33  E-value=0.26  Score=41.96  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.++ +..+++|+
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            67899999999999999999999999 89999877655 34555665

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.33  E-value=0.16  Score=41.44  Aligned_cols=41  Identities=20%  Similarity=0.351  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+ +++|+|+|+.|.+++..+...|++.+.++.++.+|.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            46 999999999999999999999997788898998876543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=92.31  E-value=0.76  Score=37.26  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=34.4

Q ss_pred             CCCeEEEEc---CChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHH-HHcC
Q 025712          178 PETNVMIMG---SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G---~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~-~~~g  223 (249)
                      .++++||+|   +|++|.+.++.....|+ +|+++++++++ .+.+ ++++
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   55 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLP   55 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcC
Confidence            478899997   58999999998888999 78888887655 2433 3444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=92.28  E-value=0.4  Score=37.02  Aligned_cols=84  Identities=15%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             ceeEEEE-ecCCceEECCCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          134 SLAHKVV-HPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       134 ~~~~~~~-~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|.+|.. .+....+.+++.+.+..+.. .........+.. .++++++||-+|+|. |..+..+++ .+...+++++.+
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~l~~-~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s   92 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTTQLAMLGIER-AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDIS   92 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-HHHHHHHHHHHH-HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESC
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-ccHHHHHHHHHH-hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEECC
Confidence            3444444 45566666766665544321 111111112222 257889999998765 667777776 466689999999


Q ss_pred             hhHHHHHHH
Q 025712          213 VQRLSIARN  221 (249)
Q Consensus       213 ~~~~~~~~~  221 (249)
                      ++..+.+++
T Consensus        93 ~~~~~~a~~  101 (205)
T 3grz_A           93 DESMTAAEE  101 (205)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988888765

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=92.26  E-value=1.3  Score=37.37  Aligned_cols=58  Identities=22%  Similarity=0.242  Sum_probs=45.6

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...++++++|+...+|..|++....|+.+|.+.++.+..  +..|.+.++.+|++.++.
T Consensus        66 ~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~  125 (325)
T 3dwg_A           66 ADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS  125 (325)
T ss_dssp             HTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEE
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence            4445677888766678999999999999999966666643  568899999999987654

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=92.26  E-value=0.79  Score=38.42  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=27.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~   40 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVND   40 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEc
Confidence            478899998 79999999988888999 788764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.24  E-value=0.31  Score=41.03  Aligned_cols=47  Identities=26%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.|+++.|+|.|.+|...++.++.+|+ +|++.+++.++. ..+++|+.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCce
Confidence            368899999999999999999999999 899998877664 35556654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.23  E-value=0.31  Score=39.74  Aligned_cols=40  Identities=23%  Similarity=0.110  Sum_probs=31.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      .++++||.| +|++|.+.+......|+ +|++++++.++.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEK   73 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            478899998 79999998888878899 78888877655443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=92.23  E-value=0.37  Score=39.36  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   45 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARAR   45 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCc
Confidence            689999998 78999999999999999 788887754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.22  E-value=1  Score=37.18  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=29.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578999998 79999999998888999 78887665

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=92.18  E-value=0.27  Score=40.63  Aligned_cols=41  Identities=10%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++ ++.++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            468899998 79999999998888999 788888 887765544

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.15  E-value=0.32  Score=39.29  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence            468899998 79999999988888999 7888876644

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=92.12  E-value=0.31  Score=43.53  Aligned_cols=48  Identities=27%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .-.|+++.|+|.|.+|..+++.++.+|+ +|++++.+..+.....+.|+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCC
Confidence            4579999999999999999999999999 89999988877533434443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.11  E-value=0.22  Score=40.39  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +.+|+|.|+|++|..+++.+...|..++..++.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999998899998776

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=92.09  E-value=0.81  Score=37.44  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=30.3

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +  |++|.+.++.....|+ +|++++++.+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            578999998 5  7999998888888899 7888887764

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=92.07  E-value=0.81  Score=38.93  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  228 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi  228 (249)
                      +...+++|++.+|. .+|.-|++....|+.+|++.+|.+.  .+..|.+.++.+||+.++
T Consensus        79 ~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~  138 (344)
T 3vc3_A           79 EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELIL  138 (344)
T ss_dssp             HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEE
Confidence            44567888777776 5899999999999999997666664  367899999999998765

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=92.07  E-value=0.21  Score=42.77  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHH-HcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~-~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.|+++.|+|.|.+|...++.++ .+|. +|++.+++.++.+..+++|+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~  209 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAE  209 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcE
Confidence            45789999999999999999999 9999 899998877666655556654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.04  E-value=0.21  Score=40.41  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHH---cCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARA---FGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~---~G~~~vi~~~~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++....   .|+ +|+++++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            467889998 79999997777766   899 899998888776554

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.03  E-value=0.23  Score=40.92  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-hHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++. ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            468899998 79999998888888999 788888876 55443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=92.02  E-value=0.94  Score=36.97  Aligned_cols=44  Identities=20%  Similarity=0.154  Sum_probs=33.9

Q ss_pred             CCCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHH
Q 025712          177 GPETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARN  221 (249)
Q Consensus       177 ~~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~  221 (249)
                      -.++++||+| +  +++|.+.++.....|+ +|++++++.  ++.+.+.+
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~   72 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCA   72 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHG
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHH
Confidence            3578999997 5  4599998888888999 788888776  55555543

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=92.02  E-value=0.28  Score=39.88  Aligned_cols=35  Identities=11%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||+| ++++|.+.++.....|+ +|+.+.++.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   45 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA   45 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc
Confidence            578999998 79999999888888999 788875543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=92.00  E-value=0.56  Score=37.64  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchh
Confidence            467899998 79999998888888999 78888775433

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.96  E-value=0.3  Score=41.43  Aligned_cols=45  Identities=27%  Similarity=0.393  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+.++.|+|.|.+|...++.++.+|. +|++.+++.++ +..+++|+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            57899999999999999999999999 89999888776 55555554

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=91.95  E-value=0.52  Score=38.37  Aligned_cols=40  Identities=23%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      ....++++||+| +|++|.+.++.....|+ +|+++++++++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~   50 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKS   50 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchh
Confidence            345789999998 79999999988888999 78888776544

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=91.93  E-value=0.57  Score=37.67  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=33.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhHHHHHHH-cC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARN-LG  223 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~-~g  223 (249)
                      ++++||+| ++++|.+.++.....  |+ .|+.+++++++.+.+.+ +|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~   49 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYG   49 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhC
Confidence            57899998 799999877665555  46 78888888888776644 44

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=91.92  E-value=0.29  Score=41.29  Aligned_cols=41  Identities=10%  Similarity=0.077  Sum_probs=34.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~~~  219 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            468899998 79999999998889999 788888 887776554

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=91.92  E-value=0.89  Score=38.50  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++|++++|. ++|.-|++....|+.+|.+.++.+..  +..|...++.+|++.++.
T Consensus        64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~  124 (334)
T 3tbh_A           64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT  124 (334)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence            34456888987565 58999999999999999966666643  568899999999987654

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=91.89  E-value=0.75  Score=38.50  Aligned_cols=55  Identities=16%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEe
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA  228 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi  228 (249)
                      ..++++++|+..++|..|++....|+..|.+.++.+..  +..|...++.+|++.++
T Consensus        57 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~  113 (316)
T 1y7l_A           57 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  113 (316)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            44466666555568999999999999999977777743  67899999999987665

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=91.89  E-value=0.51  Score=37.97  Aligned_cols=44  Identities=20%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .++++||+| ++++|.+.++.....|+ +|+++++..+  +..++++.
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~   52 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGD   52 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCT
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCC
Confidence            468899998 79999998888888899 7888877543  33445553

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=91.88  E-value=0.13  Score=43.74  Aligned_cols=46  Identities=22%  Similarity=0.360  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            57899999999999999999999999 89999887655555555564

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=91.87  E-value=0.16  Score=43.79  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+++|++.+++..+.+..+++|+.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~  210 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGAR  210 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcE
Confidence            688999999999999999999999993389998777666666666643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.86  E-value=0.31  Score=39.40  Aligned_cols=40  Identities=13%  Similarity=0.109  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++++ +.++.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   61 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEE   61 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHH
Confidence            578899998 79999999888888999 7888877 6665443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=91.86  E-value=0.3  Score=41.86  Aligned_cols=46  Identities=26%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++. +.+...+.|+.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~  204 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFA  204 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCce
Confidence            47899999999999999999999999 899998765 44555666764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=91.80  E-value=0.4  Score=38.04  Aligned_cols=51  Identities=18%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ..++...++++++||-+|+| .|..++.+++..+. .+++++.+++..+.+++
T Consensus        82 ~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH
Confidence            34455678899999999987 58888899998874 89999999988887765

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=91.79  E-value=0.23  Score=43.26  Aligned_cols=47  Identities=23%  Similarity=0.291  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~  236 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLT  236 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCce
Confidence            68899999999999999999999999 899998876555555555643

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.69  E-value=0.4  Score=40.56  Aligned_cols=43  Identities=21%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~  219 (249)
                      -.+++|||+| +|.+|...++.+... |...|+++++++.+.+.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~   63 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM   63 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH
Confidence            3578999998 799999988877777 875788888887776544

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=91.63  E-value=0.39  Score=43.06  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .-.|+++.|+|.|.+|..+++.++.+|+ +|++++++..+.......|
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G  320 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEG  320 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTT
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcC
Confidence            3578999999999999999999999999 8999998887643333334

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=91.52  E-value=0.21  Score=40.09  Aligned_cols=40  Identities=10%  Similarity=0.006  Sum_probs=32.5

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-e--CChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-D--VDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~--~~~~~~~~~  219 (249)
                      ++++||+| +|++|.+.++.....|+ +|+++ +  +++++.+.+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~   44 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRF   44 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHH
Confidence            46889998 79999999998888999 78888 5  777776654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=91.52  E-value=0.48  Score=38.92  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++|+|.| +|.+|...++.+...|. .|++++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCC
Confidence            46799998 69999999988888898 677777765

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.49  E-value=0.31  Score=38.83  Aligned_cols=39  Identities=18%  Similarity=0.305  Sum_probs=30.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~  217 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++ .+++++.+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~   44 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLD   44 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHH
Confidence            468899998 79999999988888999 78777 55554443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=91.48  E-value=0.23  Score=42.11  Aligned_cols=46  Identities=24%  Similarity=0.307  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|.++.|+|.|.+|...++.++.+|. +|++.+++.++.+...+.|+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            47899999999999999999999999 68888877665555555554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.42  E-value=0.52  Score=41.64  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh----hHHHHHHHcCCCEEe
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGADETA  228 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~----~~~~~~~~~ga~~vi  228 (249)
                      .+++|+|+|.|..|.+++++++..|+ .|.+.|..+    ...+.+++.|+....
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~~~~~~~~L~~~gi~~~~   61 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFDENPTAQSLLEEGIKVVC   61 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGGGCHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCcccCChHHHHHHhCCCEEEE
Confidence            57899999999999999999999999 899998743    345677777875544

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=91.41  E-value=1  Score=37.56  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ..++++++|+...+|..|++....|+..|.+.++.+..  +..|...++.+|++.++.
T Consensus        62 g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~  119 (313)
T 2q3b_A           62 GLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILT  119 (313)
T ss_dssp             TCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEe
Confidence            44566677665458999999999999999966666643  568899999999986653

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=91.40  E-value=0.76  Score=38.65  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=27.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++.++
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~   38 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRD   38 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCc
Confidence            367899998 79999999999999999 78876554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=91.34  E-value=0.35  Score=40.78  Aligned_cols=46  Identities=24%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~~~~~ga~  225 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.++ +.++ +..+++|+.
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~  191 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQAT  191 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcE
Confidence            67899999999999999999999999 8999988 6655 345556653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.26  E-value=1  Score=36.57  Aligned_cols=42  Identities=14%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      ..++++||+| +|++|.+.++.....|+ +|+++ .+++++.+.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~   68 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEV   68 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            3578999998 79999998888888899 66665 5555554433

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.24  E-value=0.61  Score=40.79  Aligned_cols=39  Identities=26%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+.++++|+|+|+|.+|...++.++.+|+ .+++++.++.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            36789999999999999999999999999 7888876543

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=91.23  E-value=1.7  Score=36.91  Aligned_cols=66  Identities=18%  Similarity=0.087  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      ..+.|+-.++|.-|++....|+.+|.+.++.+..  +..|.+.++.+|++.++. ....++..+..+++
T Consensus        75 ~~~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v-~~~~~~~~~~a~~l  142 (346)
T 3l6b_A           75 KPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYC-EPSDESRENVAKRV  142 (346)
T ss_dssp             CCSCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEE-CSSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEE-CCCHHHHHHHHHHH
Confidence            4455444468999999999999999977777743  467899999999987653 22223344444443

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=91.21  E-value=1  Score=40.22  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+++++++||+| +|++|...++.....|+++++.+.++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            357889999997 7999999888777789966888877653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=91.19  E-value=0.8  Score=35.33  Aligned_cols=49  Identities=18%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .+.....+++++||-+|+|. |..+..+++. +. .+++++.+++..+.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            44667789999999999774 7788888888 65 89999999998888765

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=91.16  E-value=0.38  Score=38.17  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEE-EeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~-~~~~~~~~~~~  219 (249)
                      |+++||.| +|++|...++.....|+ +|++ ..+++++.+.+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~   42 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEV   42 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            57889998 79999999998888999 6777 46776665443

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=91.13  E-value=0.75  Score=37.70  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~  215 (249)
                      .++|||+| +|.+|...++.+...| . .|+++++++++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~   42 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRK   42 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCC
Confidence            47899998 6999999988888778 7 78888877655

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.12  E-value=0.37  Score=39.88  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+++++|+|+|++|.+.+..+...|  +|++++++.++.+.+
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            5789999999999999998888889  788888887776544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.12  E-value=0.76  Score=36.71  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC-ChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~-~~~~~~~  218 (249)
                      .++++||+| +|++|.+.++.....|+ +|+.+++ +.++.+.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   44 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEA   44 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            468899998 79999999988889999 6766654 5454443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.12  E-value=0.37  Score=41.49  Aligned_cols=38  Identities=18%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ..++++|+|+|+|.+|.+.++.++.+|+ .+++++.+++
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            4678999999999999999999999999 7888876543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=91.11  E-value=0.32  Score=39.11  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++||.| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   41 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELK   41 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4678887 79999999888888999 7888888887766553

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=91.09  E-value=0.95  Score=39.72  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             cCC-CCCCeEEEEc-CChHHHHHHHHHHH-cCCCeEEEEeCCh
Q 025712          174 ANV-GPETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDV  213 (249)
Q Consensus       174 ~~~-~~g~~vlI~G-~g~vG~~ai~la~~-~G~~~vi~~~~~~  213 (249)
                      ..+ +.++++||+| ++++|++....+.. .|+ +|++++++.
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~   96 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEK   96 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            345 4578889998 68999987777666 899 788886654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=91.05  E-value=0.3  Score=39.30  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      -++++||.| +|++|.+.++.....|+ +|++++++.++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~   58 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENP   58 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            368899998 79999999998888999 78888776543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.02  E-value=0.16  Score=42.12  Aligned_cols=55  Identities=13%  Similarity=0.181  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH------------HHH--cCCCEEecCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI------------ARN--LGADETAKVST  232 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~------------~~~--~ga~~vi~~~~  232 (249)
                      .+++++|+|+|+.|.+++..+...|++.+.++.++.++.+.            +.+  -.++.+||...
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp  184 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTP  184 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECcc
Confidence            58899999999999999999999999778888888776432            222  24677776554

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.02  E-value=0.58  Score=39.85  Aligned_cols=46  Identities=24%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.+|.|+|.|.+|......++..|. .|++.++++++.+.++++|+.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~   53 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFD   53 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            3578999999999999998899998 799999999999999888874

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=91.02  E-value=1.3  Score=35.00  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=32.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCC------eEEEEeCChhHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAP------RIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~------~vi~~~~~~~~~~~~  219 (249)
                      ++++||.| +|++|.+.++.....|+.      .|++++++.++.+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~   49 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKI   49 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHH
Confidence            56899998 799999988887778884      688888887776554

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=90.93  E-value=1  Score=36.49  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      ...++++||+| +|++|.+.++.....|+ +|+.+ .++.++.+.+
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            45678999998 79999999998889999 56555 6676665544

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=90.90  E-value=0.73  Score=37.09  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~~~  221 (249)
                      .++++||+| +|++|.+.++.....|+ +|+++ .++++..+.+++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~   50 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKE   50 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHH
Confidence            357899998 79999999888888999 67776 444454554443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.89  E-value=0.25  Score=40.10  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +|++|.+.+......|+ +|++++++.+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            578999998 79999999988888999 7888876643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.88  E-value=0.48  Score=39.44  Aligned_cols=39  Identities=13%  Similarity=0.034  Sum_probs=29.2

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ...++.+|||+| +|.+|...++.+...|. .|++++++.+
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            456889999998 79999999998888998 7888876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=90.87  E-value=0.41  Score=35.78  Aligned_cols=50  Identities=12%  Similarity=0.162  Sum_probs=41.2

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +......++++||-+|+|. |..++.+++..+...+++++.+++..+.+++
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            4556788999999999876 8888899988744489999999988888864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=90.85  E-value=0.1  Score=41.58  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcC-CCeEEEEeCChhHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRL  216 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  216 (249)
                      -+++||+| +|.+|.+.++.+...| + .|+++++++++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~   61 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKI   61 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGS
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhh
Confidence            36799998 7999999999999999 7 788888876653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=90.85  E-value=0.82  Score=35.42  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC--CCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G--~~~vi~~~~~~~~~~~~~~  221 (249)
                      .+......++++||.+|+|. |..+..+++..|  . .+++++.+++..+.+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDG-LVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHH
Confidence            44566788999999999874 888888998876  5 89999999988888765

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=90.85  E-value=0.31  Score=38.91  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ..++++||.| +|++|.+.++.....|+ +|++++++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChh
Confidence            4578999998 79999999998888999 7888877653

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.78  E-value=0.34  Score=39.64  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=33.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++||+| +|++|.+.++.....|+ +|+++++++++.+.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            7899998 79999999888888999 7889988887766543

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.73  E-value=0.35  Score=41.20  Aligned_cols=34  Identities=15%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ++|+|+|+|..|..+++.||.+|+ ++++++.+++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            589999999999999999999999 7888876654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.72  E-value=0.25  Score=39.31  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcc
Confidence            357899998 79999999998888999 7888877654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.69  E-value=0.36  Score=40.94  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|+++.|+|.|.+|...++.++.+|. +|++.+++.++ +..+++|+
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  189 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA  189 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            57899999999999999999999999 89999887766 44455553

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=90.64  E-value=0.78  Score=41.43  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCC
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVD  212 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~  212 (249)
                      .+++++++||+| +|++|...++.....|+++++.+ .++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            356889999997 79999998887777899667777 665

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=90.63  E-value=1.6  Score=36.27  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             HHcCCCCCC--eEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPET--NVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~--~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++++  +|+...+|..|++....|+..|.+.++.+..  +..|.+.++.+|++.++.
T Consensus        53 ~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~  114 (304)
T 1ve1_A           53 ERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLT  114 (304)
T ss_dssp             HTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEE
Confidence            334456666  4443347999999999999999966666643  678999999999986653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.63  E-value=0.63  Score=40.29  Aligned_cols=47  Identities=17%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             HHHHHHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          166 VGVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       166 ~a~~~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .-+.+++..+ --+..+|+|.|+|..|..+.+++..+|+++++.++++
T Consensus       178 al~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          178 AFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             HHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3344454433 3367899999999999999999999999889999987

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=90.60  E-value=1.4  Score=37.97  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             CCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          179 ETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       179 g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +...+|. ++|..|+++...|+..|.+.++.+..  +..|.+.++.+|++.++. ..+.++..+.++++.
T Consensus        92 g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~-~~~~~~a~~~a~~l~  160 (372)
T 1p5j_A           92 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV-GELLDEAFELAKALA  160 (372)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEEC-CSCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            3444555 57999999999999999977777743  678899999999876542 322233344444443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.56  E-value=0.75  Score=37.54  Aligned_cols=46  Identities=30%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHHHcCCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      .+|.|+|+|.+|.+.++.++..|.. .|++.++++++.+.+++.|+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~   48 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII   48 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc
Confidence            3688999999999998888888862 588899999999888888764

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=90.54  E-value=1.1  Score=37.23  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ...++++++|+...+|..|++....|+..|.+.++.+..  +..|.+.++.+|++.++.
T Consensus        59 ~g~~~~g~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~  117 (308)
T 2egu_A           59 AGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLT  117 (308)
T ss_dssp             TTCCCTTCEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence            344566666665447999999999999999966666643  568999999999987653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.51  E-value=0.73  Score=38.68  Aligned_cols=45  Identities=31%  Similarity=0.384  Sum_probs=39.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|.|.+|.......+..|.. .|++.++++++.+.++++|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            6899999999999999888888873 68999999999998888775

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=90.41  E-value=1.5  Score=39.36  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             CCC--CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh-------hHHHHHHHcCCCE
Q 025712          177 GPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-------QRLSIARNLGADE  226 (249)
Q Consensus       177 ~~g--~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~-------~~~~~~~~~ga~~  226 (249)
                      +++  +++||+| +|++|...++.....|+++++.+.++.       +..+.+++.|...
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v  294 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRV  294 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEE
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeE
Confidence            455  8999997 799999988877788997788887653       2234455667543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.40  E-value=0.71  Score=37.62  Aligned_cols=43  Identities=19%  Similarity=0.099  Sum_probs=37.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|.|+|+|.+|.+.+......|. .|+++++++++.+.+.+.|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   44 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL   44 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCC
Confidence            68899999999998888888898 79999999999888887775

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.38  E-value=0.52  Score=38.86  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCC--eEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAP--RIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~--~vi~~~~~~~~~~~~~  220 (249)
                      .++++||+| +|++|.+.+......|+.  .|+.++++.++.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            468999998 799999877666655652  7888888888766553

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=90.33  E-value=2.3  Score=35.31  Aligned_cols=76  Identities=12%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             HHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      +++.+....  +..+|+..++|..|.+....|+..|.+.++.+..  +..|...++.+|++.+.. ....++..+.++++
T Consensus        55 a~~~i~~l~--~~~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~-~~~~~~~~~~a~~~  131 (311)
T 1ve5_A           55 ALSKALALE--NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDR-GVTAKNREEVARAL  131 (311)
T ss_dssp             HHHHHHHSS--SCCCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECT-TCCTTTHHHHHHHH
T ss_pred             HHHHHHHhc--CCCeEEEECCCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHH
Confidence            445555544  4555555578999999999999999976666633  567899999999876543 32223444444444


Q ss_pred             H
Q 025712          245 V  245 (249)
Q Consensus       245 ~  245 (249)
                      .
T Consensus       132 ~  132 (311)
T 1ve5_A          132 Q  132 (311)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=90.31  E-value=1.3  Score=37.09  Aligned_cols=49  Identities=22%  Similarity=0.362  Sum_probs=38.5

Q ss_pred             CeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEe
Q 025712          180 TNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA  228 (249)
Q Consensus       180 ~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi  228 (249)
                      ...+|. ++|..|.+....|+..|.+.++.+..  ++.|.+.++.+|++.++
T Consensus        54 ~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~  105 (318)
T 2rkb_A           54 CRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQL  105 (318)
T ss_dssp             CCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEE
Confidence            444444 58999999999999999977777743  56888999999987655

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=90.29  E-value=1.5  Score=39.44  Aligned_cols=38  Identities=32%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++++++||+| +|++|...+......|+++++.+.++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            56889999997 799999988888888996688887765

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.27  E-value=0.67  Score=37.12  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      ..+++++||+| +|++|.+.+......|+ +|++++
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~   44 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGC   44 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            45788999998 79999998888888899 677665

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=90.26  E-value=1.1  Score=39.76  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH---HHHHHHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR---LSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~---~~~~~~~ga~  225 (249)
                      +++++||+| +|++|.+.++.....|+ +++.++++...   .+..++.+..
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~  262 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGT  262 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCe
Confidence            578899997 79999998887778899 78888765422   2233455654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.24  E-value=1.1  Score=37.23  Aligned_cols=46  Identities=22%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .+|.|+|.|.+|..........|. .|.+.++++++.+.+.+.|+..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence            579999999999998888888899 8999999999999998888765

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=90.17  E-value=1.5  Score=37.21  Aligned_cols=50  Identities=8%  Similarity=0.028  Sum_probs=37.9

Q ss_pred             CeEEEEc--CChHHHHHHHHHHHcCCCeEEEEeCCh----------hHHHHHHHcCCCEEec
Q 025712          180 TNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~G--~g~vG~~ai~la~~~G~~~vi~~~~~~----------~~~~~~~~~ga~~vi~  229 (249)
                      ++|+-.+  +|.-|++....|+.+|.+.++.+..+.          +|.+.++.+|++.+..
T Consensus        82 ~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~  143 (342)
T 4d9b_A           82 DTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMC  143 (342)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEEC
T ss_pred             CEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEE
Confidence            3444444  599999999999999997666665432          4889999999987654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.16  E-value=1.5  Score=35.40  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe-CChhHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLS  217 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~-~~~~~~~  217 (249)
                      ..++++||+| +|++|.+.++.....|+ +|++++ ++.++.+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   64 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVS   64 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHH
Confidence            4578899998 79999998888888999 677776 5544433

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.13  E-value=0.57  Score=39.04  Aligned_cols=36  Identities=17%  Similarity=0.102  Sum_probs=30.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      ++++||+| +|.+|...++.+...|+ .|++++++.++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~   39 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGE   39 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCST
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            67899998 69999999988888898 78888876544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.11  E-value=0.59  Score=39.17  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -..+++|||+| +|.+|...++.+...|+ .|++++++.
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~   53 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRP   53 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            35678999998 69999999999999999 688877654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=90.04  E-value=0.76  Score=37.89  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=42.1

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      ++...++++++||-+|+|. |..+..+++..|. .+++++.+++.++.+++.
T Consensus        65 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~  114 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAM  114 (302)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHH
T ss_pred             HHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHH
Confidence            4567789999999999875 8888899999887 899999999988887653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=90.00  E-value=0.26  Score=40.13  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ++|||+| +|.+|...++.+...  |. .|++++++.++.+.+...++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~   47 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGV   47 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCC
Confidence            3689998 699999988888777  88 68888787766554444343

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=89.97  E-value=1.1  Score=38.19  Aligned_cols=51  Identities=22%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe---CChhHHHHHHHcCCCEEe
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD---VDVQRLSIARNLGADETA  228 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~~ga~~vi  228 (249)
                      .|...+|.. +|..|.+....|+..|.+.++.+.   .+..|.+.++.+|++.+.
T Consensus        77 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~  131 (352)
T 2zsj_A           77 AGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLA  131 (352)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence            444566665 799999999999999996666663   457899999999997655

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=89.96  E-value=1.3  Score=37.80  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=45.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe---CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD---VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      .|...+|.. +|..|.+....|+..|.+.++.+.   .+..|...++.+|++.+.. ..+.++..+.++++.
T Consensus        83 ~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v-~~~~~~~~~~a~~l~  153 (360)
T 2d1f_A           83 HGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQI-DGNFDDCLELARKMA  153 (360)
T ss_dssp             TTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEB-SSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHH
Confidence            344566665 799999999999999996666664   3578999999999976543 322233334444443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=89.90  E-value=0.24  Score=40.47  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             eEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRL  216 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~  216 (249)
                      +|||+| +|.+|...++.+... |. .|+++.++.++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~   38 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKV   38 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGS
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHH
Confidence            589998 799999988887777 88 677777776653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=89.88  E-value=0.51  Score=38.75  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+.+++|+|+|++|.+.+..+...|+ .+.+.+++.++.+.+
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l  168 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKL  168 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            57899999999999999999988999 899999998876655

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=89.86  E-value=1.5  Score=35.41  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeE-EEEeCChhHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRI-IITDVDVQRLS  217 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~v-i~~~~~~~~~~  217 (249)
                      .++++||+| +|++|.+.++.....|+ .+ +...++.++.+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~   65 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQ   65 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHH
Confidence            467899998 79999999998888999 55 44555655443

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=89.84  E-value=0.39  Score=43.39  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            46789999999999999999999999 7888888888766553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=89.82  E-value=1.1  Score=35.69  Aligned_cols=52  Identities=25%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHc
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+....++++++||-.|+|. |..+..+++..| ...+++++.+++..+.+++.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            44667889999999999875 888889999853 33899999999988888764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=89.78  E-value=0.4  Score=40.05  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .+|||+| +|.+|...++.+...|. .|++++++.++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   49 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQ   49 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHh
Confidence            4799998 79999999998888998 78888776544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=89.77  E-value=0.68  Score=38.46  Aligned_cols=49  Identities=14%  Similarity=0.252  Sum_probs=41.3

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +...+.++++||-+|+|. |..+..+++..|+ .+++++.+++..+.+++.
T Consensus        84 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~  132 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQV  132 (318)
T ss_dssp             TTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence            456778999999999876 8888889988888 899999999988888653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=89.71  E-value=0.99  Score=36.98  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++|+|.| +|.+|...++.+...|. .|++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~   37 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRE   37 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            46799998 69999999998888998 67777765

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=89.70  E-value=2.1  Score=37.30  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHH-cCCCeEEEEeCCh
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDV  213 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~-~G~~~vi~~~~~~  213 (249)
                      ..++++||+| ++++|.+....... .|+ +|++++.+.
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~   82 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFER   82 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCC
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCc
Confidence            5577888898 68999987777777 899 788776543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=89.66  E-value=0.36  Score=39.20  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             eEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ++||+| +|.+|...++.+...  |. .|+++++++++.+.+...++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~   46 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGI   46 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCC
Confidence            478998 699999998888877  88 68888877766554444444

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.55  E-value=0.41  Score=38.04  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ....+++|.|.|.+|...++.+...|.  |++++.++++.+.++ .|
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~   50 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SG   50 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TT
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cC
Confidence            456789999999999988888887786  778888888877665 44

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.54  E-value=0.58  Score=40.32  Aligned_cols=37  Identities=30%  Similarity=0.532  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +.++++|+|+|+|.+|...++.++.+|+ ++++++.++
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            4689999999999999999999999999 788887654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=89.50  E-value=0.66  Score=39.31  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~  216 (249)
                      .+.+|||+| +|.+|...++.+... |. .|++++++.++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   62 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRL   62 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhh
Confidence            357899998 799999988888777 88 788888766543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=89.49  E-value=0.38  Score=37.65  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=27.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      -|+|+|+|..|+.+...+...|. .|.+++..
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            38899999999999999999999 78888754

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=89.47  E-value=1.3  Score=37.40  Aligned_cols=50  Identities=18%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             eEEEE--c-CChHHHHHHHHHHHcCCCeEEEEeCChh-------------HHHHHHHcCCCEEecC
Q 025712          181 NVMIM--G-SGPIGLVTLLAARAFGAPRIIITDVDVQ-------------RLSIARNLGADETAKV  230 (249)
Q Consensus       181 ~vlI~--G-~g~vG~~ai~la~~~G~~~vi~~~~~~~-------------~~~~~~~~ga~~vi~~  230 (249)
                      ..+|.  + +|.-|++....|+.+|++.++.+..+..             |...++.+|++.++..
T Consensus        68 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~  133 (341)
T 1f2d_A           68 THLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE  133 (341)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECC
T ss_pred             CEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeC
Confidence            44454  4 6899999999999999976777754332             9999999999876643

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=89.41  E-value=0.55  Score=37.55  Aligned_cols=40  Identities=18%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLS  217 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~  217 (249)
                      -.++++||+| ++++|.+.++.....|+ .++++ .++.++.+
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   46 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAE   46 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHH
Confidence            3578999998 79999999888888999 66664 55555443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.40  E-value=1.9  Score=35.97  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=29.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+++|||+| +|.+|...++.+...|. .|+++++.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            468999998 79999999999989998 78888763

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=89.36  E-value=1.4  Score=38.53  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEE-EEeC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRII-ITDV  211 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi-~~~~  211 (249)
                      +|++++|.|.|.||..+++++...|+ +++ +.|+
T Consensus       217 ~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~  250 (419)
T 3aoe_E          217 RGARVVVQGLGQVGAAVALHAERLGM-RVVAVATS  250 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            68999999999999999999999999 777 4454

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=89.34  E-value=3.1  Score=36.60  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=45.4

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...++++++|+...+|..|++....|+..|++.+|.+..  +..|...++.+|++.++.
T Consensus       154 ~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v  213 (435)
T 1jbq_A          154 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT  213 (435)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEEC
T ss_pred             HcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEe
Confidence            3455677777766668999999999999999966666633  568999999999987653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.33  E-value=0.81  Score=37.73  Aligned_cols=44  Identities=18%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|+|.+|.+........|. .|..+++++++.+.+++.|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   47 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGL   47 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCE
Confidence            378999999999998887778898 79999999998888876653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.29  E-value=0.93  Score=37.98  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ...+|.|+|.|.+|....+.+...|. .|.+.++++++.+.+.+.|+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   75 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGA   75 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            34689999999999998888888999 79999999999888876664

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=89.28  E-value=1  Score=37.05  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..+|+|.| +|.+|...++.+...|. .|++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~   37 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRP   37 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            46799998 69999999998888998 67888776

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=89.28  E-value=1.2  Score=37.77  Aligned_cols=51  Identities=14%  Similarity=0.123  Sum_probs=40.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe---CChhHHHHHHHcCCCEEe
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD---VDVQRLSIARNLGADETA  228 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~---~~~~~~~~~~~~ga~~vi  228 (249)
                      .|...+|.. +|..|.+....|+..|.+.++.+.   .+..|...++.+|++.+.
T Consensus        75 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~  129 (351)
T 3aey_A           75 GGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             TTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence            344566666 799999999999999996666664   357899999999997654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=89.26  E-value=1.4  Score=37.04  Aligned_cols=34  Identities=24%  Similarity=0.181  Sum_probs=28.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ..+|||+| +|.+|...++.+...|. .|++++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            46899998 69999999999888998 677777755

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=89.25  E-value=1.4  Score=38.30  Aligned_cols=67  Identities=21%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEc-CChHHHH-HHHHHHHcCCCeEEEEeCChh----------------HHHHHHHcCCC-EEecCCCCccc
Q 025712          176 VGPETNVMIMG-SGPIGLV-TLLAARAFGAPRIIITDVDVQ----------------RLSIARNLGAD-ETAKVSTDIEM  236 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~-ai~la~~~G~~~vi~~~~~~~----------------~~~~~~~~ga~-~vi~~~~~~~~  236 (249)
                      ...++++||+| ++++|++ ++.+|...|+ .++++....+                -.+.+++.|.. ..++-+-.+++
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e  125 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDE  125 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHH
Confidence            35679999998 7899987 5667767788 6777654322                12456666653 44555544444


Q ss_pred             HHHHHHH
Q 025712          237 WGRYKMQ  243 (249)
Q Consensus       237 ~~~~~~~  243 (249)
                      -.+++.+
T Consensus       126 ~i~~vi~  132 (401)
T 4ggo_A          126 IKAQVIE  132 (401)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444434

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.24  E-value=0.93  Score=37.21  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|.|.+|..........|. .|++.++++++.+.+.+.|+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGA   45 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            478899999999998888888998 89999999999888877664

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.15  E-value=0.79  Score=38.22  Aligned_cols=43  Identities=14%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|+|+|+|++|.+...... .|. .|..+++++++.+.+++.|.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~~~~~~l~~~G~   45 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQEQAAAIQSEGI   45 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCHHHHHHHHhCCc
Confidence            47899999999988777666 787 78899899888888877664

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=89.10  E-value=1.7  Score=36.41  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=43.7

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEe
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  228 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi  228 (249)
                      +...+++++..+|. .+|..|++....|+..|.+.++.+.  .+..|.+.++.+|++.++
T Consensus        59 ~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~  118 (322)
T 1z7w_A           59 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  118 (322)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence            44556677545555 5899999999999999996666664  367899999999987665

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=89.09  E-value=1.7  Score=39.92  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=28.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++||.| ++++|.+........|+ +|++++.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~   41 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLG   41 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            468889998 68999999998889999 78887654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.09  E-value=0.76  Score=39.89  Aligned_cols=50  Identities=20%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             chHHHHHHHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          163 PLSVGVHACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       163 ~~~~a~~~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++.-+.+++..+. -+..+|+|.|+|..|..+.+++..+|+++|+.+|++
T Consensus       171 ~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          171 VLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            33444445554333 346788999999999999999999999899999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.04  E-value=0.82  Score=37.09  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG  223 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~g  223 (249)
                      .+ +++|+|+|.+|.+.+..+...|+ .+.+.+++.++.+.+ +++|
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~  160 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFG  160 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHT
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence            46 99999999999999999999999 788888888775544 3344

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=89.00  E-value=0.39  Score=38.53  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||.| +|++|.+.++.....|+ +|++++++.+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   50 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSG   50 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence            478899998 79999999988888999 7888776543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=88.99  E-value=1.1  Score=37.01  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ..+|+|.| +|.+|...++.+...|. .|++++++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCc
Confidence            46799998 69999999998888998 677776664

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.89  E-value=0.91  Score=37.81  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+.+|||+| +|.+|...++.+...|+ .|++++++.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~   39 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLV   39 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            567999998 79999999999888999 788887643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=88.76  E-value=0.67  Score=39.88  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++. +.+...+.|+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence            37899999999999999999999999 899998764 3344445554

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=88.75  E-value=0.68  Score=39.00  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+.+|||+| +|.+|...++.+...|. .|++++++.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   44 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   44 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCc
Confidence            357899998 79999999988888998 7888877554

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=88.72  E-value=3.5  Score=37.08  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=45.9

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      ....+++|++|+...+|..|++....|+.+|++.++.+..  +..|...++.+||+.+..
T Consensus       106 ~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~  165 (527)
T 3pc3_A          106 EQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRT  165 (527)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEe
Confidence            4456778888766568999999999999999966666643  568899999999987654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=88.71  E-value=2.2  Score=34.47  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             eEEEEc-CChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +|.|.| .|.+|...++.+... +. .++++....+..+.+...+++.+||++.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~~~dl~~~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTH   54 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECTTCCTHHHHHTTCCEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEccCCCHHHHhccCCcEEEEccC
Confidence            688899 599999999988766 78 5554433333344333357899999997

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=88.70  E-value=0.38  Score=39.19  Aligned_cols=36  Identities=33%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .++++||+| +|++|.+.++.....|+ +|++++++.+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~   63 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVA   63 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            578999998 79999999988888999 7888876543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=88.65  E-value=0.55  Score=36.63  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +|||+| +|.+|...++.+...|. .|++++++.++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~   36 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQ   36 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            689998 79999999999999998 88888888765

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=88.56  E-value=0.83  Score=42.08  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC---------ChhHH----HHHHHcCCCEEecCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---------DVQRL----SIARNLGADETAKVST  232 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~---------~~~~~----~~~~~~ga~~vi~~~~  232 (249)
                      .|+++||.| ++++|.+.+......|+ +|+++++         +.++.    +.+++.+...+.|..+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d   85 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS   85 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC
Confidence            578899998 79999998888888999 7887765         33333    3344556666666654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.53  E-value=1  Score=37.52  Aligned_cols=46  Identities=15%  Similarity=0.191  Sum_probs=40.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      -.+|.|+|.|.+|..........|. .|.+.++++++.+.+.+.|+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   66 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGAS   66 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe
Confidence            3679999999999998888888999 899999999999888887753

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.52  E-value=0.54  Score=40.19  Aligned_cols=45  Identities=29%  Similarity=0.499  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.++ +..+++|+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  211 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGL  211 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCC
Confidence            57899999999999999999999999 78888876543 22344554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=88.47  E-value=0.85  Score=37.13  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh------hHH-HHHHHcCCCEEecCCC
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV------QRL-SIARNLGADETAKVST  232 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~------~~~-~~~~~~ga~~vi~~~~  232 (249)
                      ..+..+|||+| +|.+|...++.+...|. .|++++++.      +.. +.+++.+++.+|+.-.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~   72 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   72 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence            45778999998 79999999998888898 788886532      222 2334447899987654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=88.45  E-value=1.5  Score=34.98  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      -.|++|||.|+|.+|...+......|+ .|.+++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            357999999999999999999999999 56666543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.45  E-value=0.75  Score=36.17  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...++.|+|+|.+|...+......|. .|++.++++++.+.+.+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~   69 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFP   69 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSB
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            34679999999999998888888898 68888888888766543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=88.42  E-value=0.57  Score=39.13  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=28.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+++|||+| +|.+|...+..+...|. .|+++.++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            468899998 79999999988888999 7887766654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=88.41  E-value=0.59  Score=37.41  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++||+| +|++|.+.++.....|+ +|+++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~   35 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4789998 79999999988888999 788887764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=88.40  E-value=1.5  Score=34.76  Aligned_cols=49  Identities=24%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +....+.++.+||=+|+|. |..+..+++..|. .+++++.+++.++.+++
T Consensus        29 ~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            4556788999999998776 7788889988888 89999999988777754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=88.34  E-value=1.6  Score=34.83  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=41.9

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHc
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+....++++++||-.|+|. |..+..+++..+ ...+++++.+++..+.+++.
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  137 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWEN  137 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence            44667889999999998876 888888998853 34899999999888887653

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=88.34  E-value=0.58  Score=36.59  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      .+|||+| +|.+|...++.+...|. .|+++++++++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccc
Confidence            6899998 69999999999999998 899998876653

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=88.26  E-value=3.1  Score=36.57  Aligned_cols=58  Identities=19%  Similarity=0.325  Sum_probs=45.0

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++|...+|. ++|.-|++....|+..|++.++.+..  +..|.+.++.+|++.++.
T Consensus       167 ~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v  227 (430)
T 4aec_A          167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT  227 (430)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEE
Confidence            34556788666665 58999999999999999966666643  568899999999987653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=88.25  E-value=2.7  Score=30.07  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=43.6

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ....+..-+.+++. +.-..-..++..++..|...+++...+.+..+.++++|++++++..
T Consensus        64 ~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~  124 (141)
T 3llv_A           64 RSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVA  124 (141)
T ss_dssp             HHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHH
T ss_pred             HhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECHH
Confidence            44445555555543 4345567788888888866788888889999999999999998654

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=88.24  E-value=3.1  Score=36.02  Aligned_cols=70  Identities=17%  Similarity=0.033  Sum_probs=47.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEE-ecCCCCcccHHHHHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADET-AKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~v-i~~~~~~~~~~~~~~~~~  245 (249)
                      .+.|++|+-.++|.-|.+....|+.+|.+.++.+..  +.++...++.+|++.+ .....+.++..+..+++.
T Consensus       142 ~~~g~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~~~  214 (389)
T 1wkv_A          142 VEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDS  214 (389)
T ss_dssp             SCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHH
T ss_pred             HhcCCEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH
Confidence            356654443358999999999999999966666643  5678889999999877 332123344555555543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.07  E-value=0.64  Score=36.67  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ++++||+| +|++|.+.++.....|+ +|+++++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~   36 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRR   36 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCc
Confidence            57899998 79999998888888899 788876653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=88.05  E-value=1.2  Score=39.62  Aligned_cols=43  Identities=14%  Similarity=0.164  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .+++|+|+|+|++|.+++..+... |. .|.+++++.++.+.+.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~   65 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAK   65 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHH
Confidence            357899999999999988888777 66 78888888888766543

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=88.00  E-value=2.5  Score=36.18  Aligned_cols=68  Identities=18%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             CCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          178 PETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       178 ~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      .|...+|. ++|.-|++....|+..|.+.++.+..  +..|.+.++.+|++.++. ....++..+.++++.+
T Consensus        91 ~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v-~~~~~~a~~~a~~l~~  161 (364)
T 4h27_A           91 QGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVV-GELLDEAFELAKALAK  161 (364)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEE-CSSTTHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHHHHH
Confidence            34445555 58999999999999999977777744  567889999999977554 2223445555555443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=87.96  E-value=2.6  Score=35.01  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=41.2

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHHHc
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++...++++++||-+|+|. |..++.+++..+ ..++++++.+++..+.+++.
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~  119 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN  119 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence            34667889999999999776 778888888754 23699999999988887653

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=87.93  E-value=2.1  Score=40.68  Aligned_cols=51  Identities=14%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHH-HcCCCeEEEEeCCh-------hHHHHHHHcCCCE
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDV-------QRLSIARNLGADE  226 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~-~~G~~~vi~~~~~~-------~~~~~~~~~ga~~  226 (249)
                      +.+++++||.| +|++|.+..+..- ..|++.++.+.++.       +..+.+++.|...
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v  586 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEV  586 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEE
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcE
Confidence            45789999997 7999998777665 79997788887772       2233445567643

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.93  E-value=0.61  Score=37.98  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +.+|||+|+|.+|...+..+...|. .|++++++.++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            4689999999999999999999999 68888776543

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=87.87  E-value=0.67  Score=36.77  Aligned_cols=51  Identities=16%  Similarity=0.095  Sum_probs=36.9

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH---------------HHHHHHc--CCCEEecCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR---------------LSIARNL--GADETAKVS  231 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~---------------~~~~~~~--ga~~vi~~~  231 (249)
                      +++||+| +|++|...+..+...|+ +|++++++.++               .+.++++  +++.+|+.-
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~A   70 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCA   70 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECC
Confidence            4789998 69999998888888999 78888765431               1223344  688888754

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=87.84  E-value=1.1  Score=39.71  Aligned_cols=33  Identities=12%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +|.+|+|.|.|.||..+++++...|+ +++++..
T Consensus       251 ~g~~vaVqG~GnVG~~~a~~L~~~Ga-kvVavsD  283 (470)
T 2bma_A          251 EKQTAVVSGSGNVALYCVQKLLHLNV-KVLTLSD  283 (470)
T ss_dssp             GGCEEEEECSSHHHHHHHHHHHHTTC-EECEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence            68999999999999999999999999 7775533

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=87.76  E-value=1.5  Score=36.24  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=28.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ++|||.| +|.+|...++.+...|. .|++++++.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC
Confidence            5799998 69999999998888998 6777777653

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=87.63  E-value=1.5  Score=38.79  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      -+|++|+|.|.|.||..+++++...|+ ++|+++
T Consensus       233 l~Gk~vaVQG~GnVG~~aa~~L~e~Ga-kvVavs  265 (450)
T 4fcc_A          233 FEGMRVSVSGSGNVAQYAIEKAMEFGA-RVITAS  265 (450)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHhcCC-eEEEEe
Confidence            368999999999999999999999999 777775

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.60  E-value=3.7  Score=34.03  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      ...++|.|+|+|..|....+.+. .|+ .|++.+.++++.+.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHH
Confidence            45689999999999987767666 899 899999999998877664

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.56  E-value=1.5  Score=35.96  Aligned_cols=44  Identities=14%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             CeEEEEcC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|+ |.+|..........|. .|++.++++++.+.+.+.|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   56 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGI   56 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCC
Confidence            47999998 9999998888888898 78899999998888876653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.52  E-value=1.4  Score=36.49  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++|.|+|+|.+|....+.+...|. .|++.+.++++.+.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            679999999999976666666798 899999998877653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=87.44  E-value=1.5  Score=36.77  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             CCeEEEEcCChHHHH-HHHHHHHcCCCeEEEEeCCh--hHHHHHHHcCCCEE
Q 025712          179 ETNVMIMGSGPIGLV-TLLAARAFGAPRIIITDVDV--QRLSIARNLGADET  227 (249)
Q Consensus       179 g~~vlI~G~g~vG~~-ai~la~~~G~~~vi~~~~~~--~~~~~~~~~ga~~v  227 (249)
                      .+++.|+|.|+.|.. +..+++..|+ .|.+.|..+  ...+.+++.|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~~~~~~L~~~gi~v~   54 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYPPMSTQLEALGIDVY   54 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHTTCEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCcHHHHHHHhCCCEEE
Confidence            468999999999995 7889999999 899998754  35566777776544

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=87.39  E-value=1.5  Score=34.92  Aligned_cols=51  Identities=18%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      +....++++.+||-+|+| .|..+..+++..+. .+++++.+++.++.+++..
T Consensus        48 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           48 LSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             TTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTC
T ss_pred             HHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh
Confidence            355677899999999877 57888888887787 8999999999999998754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=87.37  E-value=1.3  Score=36.39  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|.|+|+|.+|..........|. .|.+.++++++.+.+++.|+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   49 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGA   49 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            78999999999998888888898 78999999998888776654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.32  E-value=1.4  Score=34.21  Aligned_cols=39  Identities=18%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +++|+| +|.+|...+......|. .|.++++++++.+.+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~~~~~~~~   41 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            688899 99999998888888898 7888888887766554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=87.21  E-value=3.7  Score=32.95  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++++++||-.|+|. |..++.+++ .|+ .+++++.++...+.+++
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHH
Confidence            67899999998766 777777666 577 89999999988877765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=87.19  E-value=2.3  Score=33.15  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcC-----CCeEEEEeCChhHHHHHHHc
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFG-----APRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G-----~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .++++++||-+|+|. |..+..+++..+     ...+++++.+++..+.+++.
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~  128 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLEN  128 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHH
Confidence            578999999999876 888888998876     22899999999888887653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=87.13  E-value=0.83  Score=37.72  Aligned_cols=37  Identities=14%  Similarity=0.087  Sum_probs=28.4

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ..+..++||+| +|.+|...++.+...|. .|++++++.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~   46 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNN   46 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            45678899998 79999999998888998 788887654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=87.05  E-value=2.5  Score=36.68  Aligned_cols=41  Identities=15%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCC--CeEEEEeCChhHHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGA--PRIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~--~~vi~~~~~~~~~~~~~  220 (249)
                      .+|+|+|+|++|..+++.+...|.  ..+++.+++.++.+.+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la   44 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIA   44 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHH
Confidence            478999999999999988887773  37888889988876553

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=86.91  E-value=2  Score=38.70  Aligned_cols=77  Identities=8%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             HHHHHHHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      |++.+.........+-+|. ++|.-|++++..|+..|.+.+|.+..  +..|.+.++.+|++.+. .....++..+..++
T Consensus        66 A~n~i~~l~~~~~~~gVV~aSsGNhg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvl-v~~~~dda~~~a~e  144 (514)
T 1tdj_A           66 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL-HGANFDEAKAKAIE  144 (514)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEEC-CCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE-ECCCHHHHHHHHHH
Confidence            4555544322222233444 58999999999999999976666633  56888999999996654 33322333444444


Q ss_pred             H
Q 025712          244 W  244 (249)
Q Consensus       244 ~  244 (249)
                      +
T Consensus       145 l  145 (514)
T 1tdj_A          145 L  145 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=86.85  E-value=1.6  Score=35.07  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             CCCeEEEEc-C--ChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~--g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++||.| +  +++|.+.++.....|+ ++++++++.
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~   56 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASR   56 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCc
Confidence            578999997 6  6999998888888899 777776653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=86.85  E-value=0.63  Score=39.41  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  180 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEI  180 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57889999999999999999999999 7888887654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=86.84  E-value=1.2  Score=37.63  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH-HHHHHHcCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGA  224 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~-~~~~~~~ga  224 (249)
                      +.+|.|+|.|.+|.+....++..|. .|++.+++.++ .+.+++.|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~   61 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL   61 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCC
Confidence            4579999999999999999889998 67777777655 666666665

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=86.82  E-value=0.99  Score=37.20  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=27.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      |++|||+| +|.+|...++.+...|+ .|+++.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGY-SVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCC-EEEEEEe
Confidence            57899998 79999999998888999 7877765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=86.82  E-value=1.4  Score=36.60  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ...+|.|+|.|.+|....+.....|. .|++.++++++.+.+.+.|+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   53 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGA   53 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            34679999999999998888888999 78999999999888877665

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=86.81  E-value=1.4  Score=36.23  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .+|||+| +|.+|...++.+...|. .|+++++++++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   38 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGN   38 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC-
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCc
Confidence            6899998 79999999999999998 78888776433

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=86.81  E-value=0.8  Score=39.07  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  208 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLS  208 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            47899999999999999999999999 89999877533

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=86.74  E-value=3.6  Score=36.18  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=38.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +|+...+|..|++....|+.+|++.+|.+..  +..|.+.++.+|++.+..
T Consensus       162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v  212 (442)
T 3ss7_X          162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEY  212 (442)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEE
Confidence            4444458999999999999999966666643  568899999999977653

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=86.70  E-value=2.1  Score=37.47  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHH-cCCCeEEEEe
Q 025712          178 PETNVMIMGSGPIGLVTLLAARA-FGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~-~G~~~vi~~~  210 (249)
                      .|+++.|.|.|.+|..++++++. +|+ +|++++
T Consensus       211 ~gktvgI~G~G~VG~~vA~~l~~~~G~-kVv~~s  243 (419)
T 1gtm_A          211 KGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVS  243 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhcCC-EEEEEe
Confidence            68999999999999999999999 999 788774

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=86.69  E-value=1.9  Score=32.42  Aligned_cols=47  Identities=21%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++++++||=.|+|. |..++.+++. +. .|+++|.+++.++.+++
T Consensus        16 l~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HHTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHH
Confidence            345678999998888665 7777788887 66 89999999988877754

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=86.64  E-value=0.81  Score=38.76  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            57899999999999999999999999 899998776553

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=86.60  E-value=0.77  Score=39.20  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ...+|||+| +|.+|...++.+...|+ .|++++++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   63 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKK   63 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCC
Confidence            357899998 69999999988888898 788887654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=86.55  E-value=0.9  Score=38.38  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|....+.++.+|+ +|++.+++.+
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcc
Confidence            48899999999999999999999999 8999887643

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=86.37  E-value=0.88  Score=34.85  Aligned_cols=30  Identities=20%  Similarity=0.364  Sum_probs=25.3

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ++||.| +|++|...++.+. .|+ +|++++++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~   35 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRH   35 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESS
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecC
Confidence            799998 7999999888887 899 78887665

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=86.30  E-value=3.3  Score=34.44  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=26.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +++|||+| +|.+|...++.+...|. .|+++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            46899998 79999999888888898 6777764

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=86.30  E-value=0.71  Score=39.14  Aligned_cols=36  Identities=33%  Similarity=0.513  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  179 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM  179 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57899999999999999999999999 7999887654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=86.28  E-value=1.8  Score=34.08  Aligned_cols=49  Identities=6%  Similarity=0.112  Sum_probs=39.7

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++++++||-+|+|. |..+..+++..|...|++++.+++..+.+++
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            335677899999999876 8888889998875589999999988877654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=86.26  E-value=1.9  Score=36.85  Aligned_cols=45  Identities=18%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ..+|.|+|.|.+|..........|. .|.+.++++++.+.+.+.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~   66 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGI   66 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            4689999999999998888888998 89999999999888877664

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=86.25  E-value=0.89  Score=37.46  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++|||+| +|.+|...++.+...|. .|++++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            46899998 69999999988888898 788887543

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=86.24  E-value=1.5  Score=38.44  Aligned_cols=41  Identities=17%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             HHHcCCC-CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE-eCC
Q 025712          171 CRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVD  212 (249)
Q Consensus       171 l~~~~~~-~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~-~~~  212 (249)
                      ++..+.. +|.+|+|.|.|.||..+++++...|+ +++++ |++
T Consensus       203 ~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~~Ga-kvVavsD~~  245 (421)
T 2yfq_A          203 AKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGG-KVCAIAEWD  245 (421)
T ss_dssp             HHHTTCCGGGSCEEEECCSHHHHHHHHHHHHTTC-CEEECCBCC
T ss_pred             HHhcCCCccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEecC
Confidence            3433333 58999999999999999999999999 67755 444

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=86.21  E-value=2.1  Score=31.95  Aligned_cols=48  Identities=25%  Similarity=0.247  Sum_probs=38.7

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +......++.+||-+|+|. |..+..+++.. . .+++++.+++..+.+++
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            4556788999999998776 77777777766 4 89999999988887765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=86.17  E-value=1.6  Score=35.49  Aligned_cols=48  Identities=10%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++++.+||-+|+|. |..+..+++..|. .+++++.+++..+.+++
T Consensus        58 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence            446778999999998765 7788888877898 89999999988888765

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=86.09  E-value=0.85  Score=37.90  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|....+.++.+|+ +|++.+++.+
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  156 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSV  156 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccc
Confidence            47899999999999999999999999 8999987653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=86.06  E-value=1.8  Score=33.48  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=37.8

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +....+.++.+||-.|.|. |..+..+++. |+ .|+++|.+++-++.+++
T Consensus        15 ~~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHH
Confidence            3445677899999988654 6667777775 88 89999999998888865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=86.05  E-value=0.93  Score=37.21  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=36.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|.|+|.|.+|..........|. .|.+.++++++.+.+.+.|+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGA   45 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68889999999988887777898 78999999999888877665

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=85.88  E-value=1.1  Score=39.68  Aligned_cols=40  Identities=18%  Similarity=0.239  Sum_probs=33.5

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++++|+|+|.+|.+.++.+...|+ .|++++++.++.+.+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~l   42 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKL   42 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHH
Confidence            5789999999999998888888898 688888888776554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=85.74  E-value=2.7  Score=33.68  Aligned_cols=49  Identities=18%  Similarity=0.180  Sum_probs=40.3

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +....++++.+||-+|+|. |..+..+++..+. .+++++.+++..+.+++
T Consensus        54 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           54 IALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHH
Confidence            4567788999999998765 7778888888887 89999999988777754

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=85.70  E-value=6.3  Score=32.88  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CeEEEEc--CChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCC
Q 025712          180 TNVMIMG--SGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       180 ~~vlI~G--~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++|+-.|  +|..|++....|+.+|.+.++.+..   +..|.+.++.+|++.++...
T Consensus        71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~  127 (325)
T 1j0a_A           71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDA  127 (325)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESC
T ss_pred             CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCc
Confidence            4454453  5899999999999999976666643   56899999999998766433

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=85.62  E-value=1.9  Score=36.06  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      ..+|.|+|+|.+|.+........|. .|... ..+++.+.+++.|
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g   61 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATG   61 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCC
Confidence            3679999999999988888878898 77777 7888888887655

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=85.59  E-value=1.2  Score=37.15  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=28.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      +++|||+| +|.+|...+..+...|. .|+++.++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCcc
Confidence            68899998 79999999998888999 7777665543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=85.59  E-value=1.1  Score=37.67  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  178 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPK  178 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            57889999999999999999999999 7888887654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=85.54  E-value=2.4  Score=35.90  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      +++++|+| +|.+|...++.+...|. .|++++++.++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~   42 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   42 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChh
Confidence            57899998 79999999888888898 677877766554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=85.46  E-value=1.7  Score=35.19  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=29.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +.+|+|.|+|++|..++......|..++..+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5799999999999999999999999888887653

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=85.42  E-value=3.2  Score=34.84  Aligned_cols=50  Identities=18%  Similarity=0.251  Sum_probs=37.3

Q ss_pred             CeEEEE-c-CChHHHHHHHHHHHcCCCeEEEEeCCh--h--------HHHHHHHcCCCEEec
Q 025712          180 TNVMIM-G-SGPIGLVTLLAARAFGAPRIIITDVDV--Q--------RLSIARNLGADETAK  229 (249)
Q Consensus       180 ~~vlI~-G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~--------~~~~~~~~ga~~vi~  229 (249)
                      ++|+-. + +|..|++....|+..|.+.++.+..+.  .        |.+.++.+|++.++.
T Consensus        68 ~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~  129 (338)
T 1tzj_A           68 DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLV  129 (338)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEEC
T ss_pred             CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEe
Confidence            344434 3 689999999999999996666664332  2        899999999987653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=85.37  E-value=1.5  Score=36.43  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      .+|.|+|+|.+|......+...|. .|.+.++++++.+.+.+.|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            679999999999998888888898 68889999888887777664

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.37  E-value=1.9  Score=36.31  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=35.8

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+|.|+|+|.+|......+...|. .|.++++++++.+.+++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~   46 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDR   46 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc
Confidence            479999999999988877777898 788999999888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	3e-36
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	9e-28
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	7e-25
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-24
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-24
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	2e-22
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-21
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	5e-21
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-20
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	4e-20
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	4e-20
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	6e-20
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	7e-20
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	3e-19
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	5e-17
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-16
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	5e-16
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	8e-15
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	1e-12
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	4e-08
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	8e-07
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	6e-06
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	6e-06
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	5e-05
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	0.001
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	0.004

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 3e-36
 Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 2/180 (1%)

Query: 12  KNQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           K  N++  + G   L+++ Y +P  GP +V +R+ ++GICGSDVH+++  R  NFIVKKP
Sbjct: 5   KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKP 64

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           MV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P + F  +PP 
Sbjct: 65  MVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD 124

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIG 191
           +G+L     H A  CYKLPDNV         PL   + A      G    +M+    P  
Sbjct: 125 DGNLCRFYKHNAAFCYKLPDNVKPLV-THRFPLEKALEAFETFKKGLGLKIML-KCDPSD 182

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score =  102 bits (255), Expect = 9e-28
 Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 1/174 (0%)

Query: 15  NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
           N++A L     L+++   +P     +V +++  +GICGSDVH+++  R A+FIVK PMVI
Sbjct: 2   NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 61

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
           GHE +G + +VG  VK L+ GDRVA+EPG+ C  C  CK G YNLCP++ F  +PP +G+
Sbjct: 62  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGN 121

Query: 135 LAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGS 187
           LA   VH A  C+KLPDN ++++       L   V A   A    +  + +M S
Sbjct: 122 LARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS 175

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 95.7 bits (237), Expect = 7e-25
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K L ++   +      +V+++I A GIC        ++       K P+++GHE  G++E
Sbjct: 19  KPLSLETITVAPPKAHEVRIKILASGIC----GSDSSVLKEIIPSKFPVILGHEAVGVVE 74

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPA 143
            +G+ V  ++ GD+V       CG C  CK+ + N C +            +  +     
Sbjct: 75  SIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRG 134

Query: 144 KLCYKLPDNVSLEEGAMCEPLSVGV------------HACRRANVGPETNVMIMGSGPIG 191
           K  Y L    +  E  +   ++V                     +     ++  G G   
Sbjct: 135 KPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQINKAFELLSSGQGVRS 194

Query: 192 L 192
           +
Sbjct: 195 I 195

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 95.0 bits (235), Expect = 1e-24
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 27/208 (12%)

Query: 15  NMAAWLLGIKTLKIQPYHLPTL-------GPQDVKVRIKALGICGSDVHHFKTMRCANFI 67
           N     LG   +++Q    P +           V +++ +  ICGSD H  +    A   
Sbjct: 2   NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--- 58

Query: 68  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR--- 124
            +  +V+GHE  G + E G +V++L++GD V++   ++CG C  CK     +C  +    
Sbjct: 59  -QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR 117

Query: 125 ------FFGSPPTNGSLAHKVVHPAK--LCYKLPDNVS-LEEGAMCEPLSVGVHACRRAN 175
                 +       G  A  V+ P       KLPD    +E+  + E + V V +   A 
Sbjct: 118 AGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAP 177

Query: 176 VGPETNVMIMGSGPIGLVTLLAARAFGA 203
            G         +G      +   + F A
Sbjct: 178 RGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.4 bits (231), Expect = 4e-24
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 16/184 (8%)

Query: 14  QNMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVK 69
           +      +      K  K   Y        D+ ++I+A G+CGSD+H           +K
Sbjct: 5   EKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIH---CAAGHWGNMK 61

Query: 70  KPMVIGHECAGIIEEVGSEVKS-LEVGDRVAL-EPGISCGHCSLCKAGSYNLCPEMRFFG 127
            P+V+GHE  G + ++G +  S L+VG RV +     SC  C  CK  +   C +     
Sbjct: 62  MPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY 121

Query: 128 SPP------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRRANVGPET 180
           S P      + G  A+ V         +P+N+ +E   + E  +        + +V    
Sbjct: 122 SQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRF 181

Query: 181 NVMI 184
            ++ 
Sbjct: 182 TLVG 185

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 88.8 bits (219), Expect = 2e-22
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 25/184 (13%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K L I+   +      +++++I A G+C +D++H    +  +          HE AGI+E
Sbjct: 19  KPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLG---HEGAGIVE 75

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-------------- 129
            VG  V   + G++V       CG C  C++   N C +     SP              
Sbjct: 76  SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKG 135

Query: 130 ------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHAC-RRANVGPETN 181
                     + +   V       K+  +V L+E      PL     A     +      
Sbjct: 136 RKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRT 195

Query: 182 VMIM 185
           V+ +
Sbjct: 196 VLSL 199

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 86.0 bits (212), Expect = 2e-21
 Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 22/175 (12%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L  + + +  +    + V I + G+CGSDVH     R  +  V  P+++GHE AG + 
Sbjct: 15  QPLVYKEFEISDIPRGSILVEILSAGVCGSDVH---MFRGEDPRVPLPIILGHEGAGRVV 71

Query: 84  EVGSEVKSLEVGD-----RVALEPGISCGHCSLCKAG-SYNLCPEMRFFG-------SPP 130
           EV  E + L          +    GI+CG C  CK      LCP  + +G        P 
Sbjct: 72  EVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPH 131

Query: 131 TNGSLA-HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMI 184
             G  + H V+ P     K+ + ++        PL     A           V++
Sbjct: 132 LRGCYSSHIVLDPETDVLKVSEKITHR-----LPLKEANKALELMESREALKVIL 181

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 85.0 bits (209), Expect = 5e-21
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
             L+I+   +P  GP  V V+I+A G+C +D+H  +           P + GHE  G + 
Sbjct: 16  APLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPP--LPFIPGHEGVGYVA 73

Query: 84  EVGSEVKSLEVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
            VGS V  ++ GDRV +     +CG C  C  G   LC   +       NG  A  V+  
Sbjct: 74  AVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNT-GYSVNGGYAEYVLAD 132

Query: 143 AKLCYKLPDNVSLEEGA-MCEPLSVGVHACRRANVGPETNVMIM 185
                 LP NV         + ++  +   R   +     V+ M
Sbjct: 133 PNYVGILPKNVKATIHPGKLDDINQILDQMRAGQIEGRI-VLEM 175

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.9 bits (206), Expect = 1e-20
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFK-----TMRCANFIVKKPMVIGHEC 78
           K L +Q   +P      V ++++A G+C SDVH  +          +  VK P+ +GHE 
Sbjct: 11  KPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEI 70

Query: 79  AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHK 138
           AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G    +G+ A  
Sbjct: 71  AGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEY 129

Query: 139 VVHPA-KLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGPET 180
           V+ P  K  YKL     +    M  E  +  +            
Sbjct: 130 VIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKAIGRQ 173

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 4e-20
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K L I+   +      +V+++I A  +C +D +   T+  A+     P+++GH  AGI+E
Sbjct: 17  KPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPEGCFPVILGHLGAGIVE 73

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT------------ 131
            VG  V  L+ GD V       CG C  C     NLC ++R                   
Sbjct: 74  SVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKG 133

Query: 132 --------NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174
                     + +   V       K+   + ++E       ++      +A
Sbjct: 134 KTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFV---THNLSFDEINKA 181

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 82.3 bits (202), Expect = 4e-20
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + LKI+    PT+   +V VRIKA G+C +D+H              P++ GHE  GI+E
Sbjct: 11  EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPK--LPLIPGHEGVGIVE 68

Query: 84  EVGSEVKSLEVGDRVALEPGISC-GHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
           EVG  V  L+VGDRV +    S  GHC  C +G   LC   +       +G  A      
Sbjct: 69  EVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA-GYSVDGGYAEYCRAA 127

Query: 143 AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG 186
           A    K+PDN  +E     E ++       +  +     V+ + 
Sbjct: 128 ADYVVKIPDNTIIEV-QPLEKINEVFDRMLKGQINGRV-VLTLE 169

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (201), Expect = 6e-20
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           + L+         GP DVK+ I   G+C SD+H  ++          P V GHE  G + 
Sbjct: 11  QPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT---VYPCVPGHEIVGRVV 67

Query: 84  EVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH----- 137
            VG +V+    GD V +   + SC HC  C+ G  N C  M    + PT     H     
Sbjct: 68  AVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGY 127

Query: 138 --KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVG 177
             ++V   +   ++       E    + ++       R +V 
Sbjct: 128 SQQIVVHERYVLRIRVA--DIEMIRADQINEAYERMLRGDVK 167

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 82.6 bits (203), Expect = 7e-20
 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 31/175 (17%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
             L I+   +      +V++++ A  +C +D++     + A F    P+V+GHECAGI+E
Sbjct: 19  SPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF----PVVLGHECAGIVE 74

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT------------ 131
            VG  V + + GD+V       C  C LC +   NLC ++R F  P              
Sbjct: 75  SVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF 134

Query: 132 ------------NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174
                         S +   V       ++ D   L+        ++   +   A
Sbjct: 135 TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLV---THALPFESINDA 186

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 24  KTLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGII 82
           K L+I+    P L G  DV VRI   G+C +D+H  + M       K P  +GHE  G I
Sbjct: 10  KPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYI 69

Query: 83  EEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHP 142
           EEV   V+ LE GD V L P ++ G C  C+AG    C  + F G    +G  A  +   
Sbjct: 70  EEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTS 128

Query: 143 AKLCYKLPDNVSLEEGA-MCEPLSVGVHACRRANVGPET 180
            +   KLP +V +E      + ++  +    +  V    
Sbjct: 129 HRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGEVLGRA 167

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 74.2 bits (181), Expect = 5e-17
 Identities = 44/186 (23%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 17  AAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGH 76
              +LGI  L       P  G  D  VR  A+  C SD+H    +       +K M++GH
Sbjct: 3   GFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHT---VFEGALGDRKNMILGH 59

Query: 77  ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP----EMRFFGSPPTN 132
           E  G + EVGSEVK  + GDRV +            +AG            +F       
Sbjct: 60  EAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV 119

Query: 133 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL 192
                 V         LP +V L +      +  G      A       +++M   P  L
Sbjct: 120 FGEYFHVNDADMNLAILPKDVDLSKLVTH--VYHGFDHIEEA-------LLLMKDKPKDL 170

Query: 193 VTLLAA 198
           +  +  
Sbjct: 171 IKAVVI 176

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 30/174 (17%)

Query: 24  KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIE 83
           K   I+   +      +V++++ A GIC SD H          +   P++ GHE AGI+E
Sbjct: 19  KPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHV----VSGTLVTPLPVIAGHEAAGIVE 74

Query: 84  EVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP-------------- 129
            +G  V ++  GD+V       CG C +CK    N C +                     
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134

Query: 130 ------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVG 177
                     + +   V       K+    +L      +PL   V    + N G
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAAFAL------DPLITHVLPFEKINEG 182

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 71.9 bits (175), Expect = 5e-16
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 11/195 (5%)

Query: 16  MAAWLLGI-KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVI 74
           +AA         ++Q   +      +V V++ A G+C +D+               P V+
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPL----PAVL 60

Query: 75  GHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGS 134
           GHE +GIIE +G  V  L+VGD V L  G     C+ C  G+   C E         +G+
Sbjct: 61  GHEGSGIIEAIGPNVTELQVGDHVVLSYGYCG-KCTQCNTGNPAYCSEFFGR---NFSGA 116

Query: 135 LAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR--ANVGPETNVMIMGSGPIGL 192
            +            + ++    + +         +   +   +   +  V       I  
Sbjct: 117 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQ 176

Query: 193 VTLLAARAFGAPRII 207
             + + +      II
Sbjct: 177 AAIDSRKGITLKPII 191

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 8e-15
 Identities = 42/92 (45%), Positives = 62/92 (67%)

Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           V+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+ 
Sbjct: 1   VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60

Query: 213 VQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244
             RLS A+ +GAD   ++S +       K++ 
Sbjct: 61  ATRLSKAKEIGADLVLQISKESPQEIARKVEG 92

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 212
           VSLEEGA+ EPLSVGVHACRRA V   T V+++G+GPIGLV++LAA+A+GA  +      
Sbjct: 1   VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-S 59

Query: 213 VQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244
            +RL +A+N GAD T  V    E       + 
Sbjct: 60  PRRLEVAKNCGADVTLVVDPAKEEESSIIERI 91

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 27/169 (15%)

Query: 25  TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEE 84
           ++ ++      L    V +++   GI   D    K            + I          
Sbjct: 17  SVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAG------ 70

Query: 85  VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK 144
                              +   +      G   +        S      L+     P  
Sbjct: 71  ------------------TVVSSNDPRFAEGDEVIATSYELGVSRDG--GLSEYASVPGD 110

Query: 145 LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV 193
               LP N+SL+E  + + L++           P     I+ +   G V
Sbjct: 111 WLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRIQGRV 158

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 32/177 (18%)

Query: 15  NMAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKK 70
              A+++       T  +Q   +  L   DV VR+    +   D          +  + K
Sbjct: 3   AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGL----ASIPDGKIVK 58

Query: 71  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 130
                         V S+      GD V                          +     
Sbjct: 59  TYPFVPGIDLAGVVVSSQHPRFREGDEVIA----------------------TGYEIGVT 96

Query: 131 TNGSLAHKVVHPAKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMG 186
             G  +       +    LP  +      +    L   +    R  +   T V+ + 
Sbjct: 97  HFGGYSEYARLHGEWLVPLPKGLERIAQEISLAELPQALKRILRGELRGRT-VVRLA 152

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 153 VSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 211
           + LE   M  + ++ G H    A++   ++V+++G G +GL+ +  A+  GA RII    
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 212 DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW 244
               +  A+  GA +              K+  
Sbjct: 61  RPICVEAAKFYGATDILNYKNGHIEDQVMKLTN 93

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 159 AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 218
            + + L  G H    A VGP + V + G+GP+GL    +AR  GA  +I+ D++  RL+ 
Sbjct: 6   CLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH 65

Query: 219 ARNLGADET 227
           A+  G +  
Sbjct: 66  AKAQGFEIA 74

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 25/163 (15%), Positives = 39/163 (23%), Gaps = 30/163 (18%)

Query: 16  MAAWLL----GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKP 71
           + A LL    G     +Q      L   DV V +    +   D            I   P
Sbjct: 1   LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAI--TGKGKIIRNFP 58

Query: 72  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 131
           M+ G + AG +                               AG   L            
Sbjct: 59  MIPGIDFAGTVRTS----------------------EDPRFHAGQEVLLTGWGVG--ENH 94

Query: 132 NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA 174
            G LA +          +P   + +E ++ E  +         
Sbjct: 95  WGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIINNQ 137

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 18/75 (24%), Positives = 32/75 (42%)

Query: 170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 229
           A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LGA +   
Sbjct: 20  AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 79

Query: 230 VSTDIEMWGRYKMQW 244
                +       + 
Sbjct: 80  PRELDKPVQDVITEL 94

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 33/166 (19%)

Query: 22  GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGI 81
           G + L+   +        +++V  KA+GI          +R   +               
Sbjct: 11  GPEVLQAVEFTPADPAENEIQVENKAIGIN----FIDTYIRSGLYPPPSLPSGLGTE--- 63

Query: 82  IEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVH 141
                                  + G  S   +G  ++    R   +    G+ +     
Sbjct: 64  -----------------------AAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNI 100

Query: 142 PAKLCYKLPDNVSLEEG-AMCEPLSVGV--HACRRANVGPETNVMI 184
            A     LP  + ++       PL      H    +     ++++I
Sbjct: 101 IADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.98
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.97
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.97
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.97
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.97
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.96
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.96
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.9
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.89
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.69
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.68
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.66
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.63
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.62
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.62
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.6
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.58
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.57
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.56
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.56
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.55
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.54
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.54
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.53
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.52
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.51
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.51
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.51
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.49
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.44
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.44
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.4
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.39
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.38
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.18
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.24
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.22
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.04
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.01
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.78
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.46
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.38
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.36
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.24
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.23
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.16
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.08
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.07
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.93
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.92
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.82
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.76
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.72
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.7
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.64
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.61
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.61
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.6
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.51
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.46
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.4
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.38
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.35
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.35
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.27
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.21
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.2
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.18
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.16
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.09
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.08
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.05
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.02
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.99
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.98
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.96
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.92
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.91
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.91
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.87
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.73
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.69
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.58
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.5
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.29
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.22
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	94.21
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.16
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.06
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.96
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.92
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.9
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.8
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.78
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.73
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.65
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.58
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	93.57
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.55
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.34
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.28
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.24
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.1
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.97
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.73
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.7
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.69
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.47
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.46
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.38
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.38
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.33
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.3
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.26
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	92.16
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	92.1
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.09
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	92.02
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	91.95
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	91.62
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.62
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.51
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.49
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	91.41
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.27
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.04
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.01
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	91.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.99
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.95
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.91
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.79
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	90.64
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.51
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.41
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.19
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.13
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.98
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.93
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.87
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.84
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.8
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	89.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.67
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.59
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	89.56
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	89.28
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.27
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.06
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.04
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	89.01
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.85
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.8
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	88.8
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.77
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	88.73
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	88.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.61
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.52
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	88.3
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.25
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.23
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	88.05
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.9
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	87.88
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	87.82
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.8
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.76
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.73
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.66
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.62
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	87.56
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.46
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	87.44
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.4
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	87.33
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.33
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.33
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.29
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.19
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.15
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	87.1
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	86.78
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	86.68
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.47
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	86.45
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	86.26
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.24
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	86.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	85.86
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.84
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	85.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.71
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.63
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	85.28
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.25
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	85.23
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	85.15
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	84.56
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.42
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	84.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.27
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	84.19
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.17
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.16
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.97
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.94
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	83.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	83.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	83.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	83.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.34
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	83.33
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	82.99
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	82.91
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	82.85
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.79
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	82.72
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.65
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.54
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	82.14
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	82.03
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	81.83
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	81.83
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.63
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.35
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	81.33
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	81.23
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.22
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	81.12
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.11
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	81.11
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.07
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	81.06
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.92
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	80.91
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.77
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	80.7
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	80.54
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.41
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.4
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	80.37
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.23

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=4.3e-38  Score=247.95  Aligned_cols=174  Identities=41%  Similarity=0.774  Sum_probs=162.3

Q ss_pred             cceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           14 QNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      .||++++.++++|+++|+|.|+|+++||||||++++||++|++++.+.+........|+++|||++|+|+++|+++++|+
T Consensus         1 ~~maAVl~g~~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           1 DNLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             CCEEEEEEETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             CceEEEEEcCCcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            37899999999999999999999999999999999999999999988766666678899999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      +||+|++.+...|+.|..|..+.+.+|.+..+.+....+|+|+||+.++.++++++|+++++++++.+. .+.++|++++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~~  160 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFE  160 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHHH
T ss_pred             CCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999998888877788999999999999999999999999999775 6889999999


Q ss_pred             HcCCCCCCeEEEEcC
Q 025712          173 RANVGPETNVMIMGS  187 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~  187 (249)
                      .+++++|++|+|+|+
T Consensus       161 ~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         161 AARKKADNTIKVMIS  175 (178)
T ss_dssp             HHHHCCTTCSEEEEE
T ss_pred             HhCCCCCCEEEEEcc
Confidence            999999999999863

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=240.22  Aligned_cols=172  Identities=42%  Similarity=0.745  Sum_probs=158.1

Q ss_pred             ccceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCC
Q 025712           13 NQNMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSL   92 (249)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   92 (249)
                      +.++++++++|++|+++|+|.|+|+++||||||++++||++|++++++.+.+.....+|.++|||++|+|+++|+++++|
T Consensus         6 p~~~a~V~~gp~~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           6 PNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCCEEEEEEETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCCEEEEEeCCCeEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            46889999999999999999999999999999999999999999998766555556789999999999999999999999


Q ss_pred             CCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH
Q 025712           93 EVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR  172 (249)
Q Consensus        93 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~  172 (249)
                      ++||+|++.+...|++|.+|+.+++++|.+....+....+|+|+||+.++.++++++|+++++++|++ .++++++++++
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~-~pl~~a~~a~~  164 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHR-FPLEKALEAFE  164 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEE-EEGGGHHHHHH
T ss_pred             cccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHH-HHHHHHHHHHH
Confidence            99999999999999999999999999999998888877889999999999999999999999988765 45667888888


Q ss_pred             HcCCCCCCeEEEE
Q 025712          173 RANVGPETNVMIM  185 (249)
Q Consensus       173 ~~~~~~g~~vlI~  185 (249)
                      ..+.++|++|||.
T Consensus       165 ~~~~~~G~~VlIg  177 (185)
T d1pl8a1         165 TFKKGLGLKIMLK  177 (185)
T ss_dssp             HHHTTCCSEEEEE
T ss_pred             HhCCCCCCEEEEE
Confidence            8889999999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.5e-33  Score=220.29  Aligned_cols=167  Identities=32%  Similarity=0.511  Sum_probs=149.3

Q ss_pred             eEEEEecCC-CeEEEEecCCCC-CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           16 MAAWLLGIK-TLKIQPYHLPTL-GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        16 ~~~~~~~~~-~l~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||+++.+++ .|++++++.|++ +++||||||.|++||++|+..+.|..........|+++|||++|+|+++|+++++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            678888876 499999999986 689999999999999999999888664444457899999999999999999999999


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcc-ccchHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM-CEPLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~-~~~~~~a~~~l~  172 (249)
                      +||+|++.+...|+.|..|+.+.+.+|.+....+. ..+|+|+||+.++.++++++|++++++.+++ +.++.++|++++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al~  159 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLE  159 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTT-TBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHHH
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccccee-ecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999998777664 4689999999999999999999999987764 457889999998


Q ss_pred             HcCCCCCCeEEE
Q 025712          173 RANVGPETNVMI  184 (249)
Q Consensus       173 ~~~~~~g~~vlI  184 (249)
                      .+++ .|++|||
T Consensus       160 ~~~~-~G~~VlI  170 (171)
T d1h2ba1         160 KGEV-LGRAVLI  170 (171)
T ss_dssp             TTCC-SSEEEEE
T ss_pred             hcCC-CCCEEEe
Confidence            8888 8999998

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=2.1e-33  Score=223.53  Aligned_cols=169  Identities=25%  Similarity=0.372  Sum_probs=143.7

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      ++|+|+++..+. +|+++++|.|+|+++||||||++++||++|++++.|.+    +..+|+++|||++|+|+++|+++++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~----~~~~P~i~GHE~~G~V~~vG~~v~~   77 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY----PVPLPAVLGHEGSGIIEAIGPNVTE   77 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcc----cccCCcccccceEEEeeecCcccee
Confidence            568899988764 79999999999999999999999999999999988753    3578999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---CCC-------------------CCCCceeEEEEecCCceEEC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSP-------------------PTNGSLAHKVVHPAKLCYKL  149 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~g~~~~~~~~~~~~~~~i  149 (249)
                      |++||+|+..+ ..|++|.+|+.+++++|++....   +..                   ...|+|+||..++..+++++
T Consensus        78 ~~vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~i  156 (194)
T d1f8fa1          78 LQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  156 (194)
T ss_dssp             CCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             EccCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEEC
Confidence            99999996654 58999999999999999864211   110                   01378999999999999999


Q ss_pred             CCCCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 025712          150 PDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT  209 (249)
Q Consensus       150 p~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~  209 (249)
                      |++++++++                       +++.|+|++|++++|+++.+|+..++++
T Consensus       157 p~~i~~~~~-----------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         157 TKDFPFDQL-----------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CTTCCGGGG-----------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCCcccE-----------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            998886554                       3456899999999999999999777765

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=1e-32  Score=220.65  Aligned_cols=170  Identities=24%  Similarity=0.326  Sum_probs=148.5

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      +++||+++.+++ +|+++|++.|+|+++||||||++++||++|++++.+...   ...+|.++|||++|+|+++|+++++
T Consensus         7 ~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~---~~~~p~i~GhE~~G~v~~vG~~v~~   83 (199)
T d1cdoa1           7 IKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH---KDGFPVVLGHEGAGIVESVGPGVTE   83 (199)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCC---TTSCSEECCCCEEEEEEEECTTCCS
T ss_pred             eEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhccc---ccccccccccccceEEEEEcCCCce
Confidence            557899998876 799999999999999999999999999999999888542   3578999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC--------------------CCCCceeEEEEecCCceEECCC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP--------------------PTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      +++||+|++.+...|++|.+|+.+++++|.+.......                    ...|+|+||+.++.++++++|+
T Consensus        84 ~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~  163 (199)
T d1cdoa1          84 FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDP  163 (199)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCT
T ss_pred             ecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCC
Confidence            99999999999999999999999999999764322110                    1249999999999999999999


Q ss_pred             CCChhhhcccc-chHHHHHHHHH-cCCCCCCeEEEE
Q 025712          152 NVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIM  185 (249)
Q Consensus       152 ~~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~  185 (249)
                      ++++++++++. ++.+++.+++. ...+.|++|||+
T Consensus       164 ~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         164 SVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999887665 68899999955 677899999984

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.6e-32  Score=214.03  Aligned_cols=171  Identities=27%  Similarity=0.366  Sum_probs=148.5

Q ss_pred             CcccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           11 DKNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      ++.+|||+++.+++ .|+++|+|.|.|+++||||||++++||++|++.++|.+.  ....+|.++|||++|+|+++|+++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~--~~~~~P~i~GhE~~G~V~~~G~~v   79 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP--VKPPLPFIPGHEGVGYVAAVGSGV   79 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCcc--ccccCCcCCCCcceEEEEEeCCCc
Confidence            45779999999886 599999999999999999999999999999999998653  235689999999999999999999


Q ss_pred             CCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           90 KSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        90 ~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      +++++||+|...+. ..|+.|.+|..+.+.+|......|. ..+|+|+||+.+++++++++|++++++.++.+. .+.++
T Consensus        80 ~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~-~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~  158 (175)
T d1llua1          80 TRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGY-SVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQI  158 (175)
T ss_dssp             CSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHH
T ss_pred             cccccCCEEEeccccccCCccccccCCccccccccccccc-ccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHH
Confidence            99999999987654 5899999999999999998877765 478999999999999999999999988777444 56777


Q ss_pred             HHHHHHcCCCCCCeEEEE
Q 025712          168 VHACRRANVGPETNVMIM  185 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~  185 (249)
                      +..++... .+|++|||+
T Consensus       159 ~~~~~~g~-~~G~~VLVl  175 (175)
T d1llua1         159 LDQMRAGQ-IEGRIVLEM  175 (175)
T ss_dssp             HHHHHTTC-CSSEEEEEC
T ss_pred             HHHHHhCC-CCCCEEEeC
Confidence            77776554 479999984

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-32  Score=217.36  Aligned_cols=167  Identities=26%  Similarity=0.466  Sum_probs=144.3

Q ss_pred             CcccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCC
Q 025712           11 DKNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEV   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   89 (249)
                      |.+.++|+++.+++ .|++++++.|.|+++||||||.+++||++|+.+++|.+.   ...+|+++|||++|+|+++|+++
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~---~~~~P~vlGHE~~G~V~~vG~~v   77 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVNGEK   77 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEESSCC
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCC---ccccccccceeeeeeeeEEeccc
Confidence            55678999999886 599999999999999999999999999999999987642   24689999999999999999998


Q ss_pred             C-----CCCCCCeEEEccCcCCCCCccccCCCC-CCCcCccccCCC-------CCCCceeEEEEec-CCceEECCCCCCh
Q 025712           90 K-----SLEVGDRVALEPGISCGHCSLCKAGSY-NLCPEMRFFGSP-------PTNGSLAHKVVHP-AKLCYKLPDNVSL  155 (249)
Q Consensus        90 ~-----~~~~Gd~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~g~~~~~~~~~-~~~~~~ip~~~~~  155 (249)
                      +     .+++||+|+..+...|++|.+|+.++. .+|.+....|..       ..+|+|+||+.++ ..+++++|+++++
T Consensus        78 ~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~  157 (184)
T d1vj0a1          78 RDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITH  157 (184)
T ss_dssp             BCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCE
T ss_pred             cccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCH
Confidence            6     468999999999999999999999975 568877666532       3479999999996 5799999999986


Q ss_pred             hhhccccchHHHHHHHHHcCCCCCCeEEEE
Q 025712          156 EEGAMCEPLSVGVHACRRANVGPETNVMIM  185 (249)
Q Consensus       156 ~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~  185 (249)
                      +.     ++++|+++++++++++|++|||+
T Consensus       158 ~~-----pl~~A~~a~~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         158 RL-----PLKEANKALELMESREALKVILY  182 (184)
T ss_dssp             EE-----EGGGHHHHHHHHHHTSCSCEEEE
T ss_pred             HH-----HHHHHHHHHHHhCCCcCCEEEEe
Confidence            53     45678888999999999999997

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.98  E-value=3.4e-32  Score=218.13  Aligned_cols=168  Identities=24%  Similarity=0.357  Sum_probs=144.3

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      .++|||+++.+++ +|+++|+|.|.|+++||||||.+++||++|++.++|.+    +..+|+++|||++|+|+++|++++
T Consensus         6 ~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~----~~~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           6 VIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK----KALFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTS----CCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             eEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeec----ccccccccccccceEEeeecCCce
Confidence            4689999999885 69999999999999999999999999999999888743    356799999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC------------------------CCCCceeEEEEecCCce
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------------------------PTNGSLAHKVVHPAKLC  146 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~~~~~~~~~~  146 (249)
                      ++++||+|++.+...|+.|.+|+.+++++|.+....+..                        ...|+|+||+.+++.++
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            999999999999999999999999999999875444321                        12489999999999999


Q ss_pred             EECCCCCChhhhcccc-chHHHHHHHHHcCCCCCCeEEEE
Q 025712          147 YKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIM  185 (249)
Q Consensus       147 ~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~  185 (249)
                      +++|++++++.++.+. .+.+.+.+++.  +++|++|.|+
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi  199 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTI  199 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence            9999999998766554 45566666654  4688988775

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.3e-31  Score=209.22  Aligned_cols=167  Identities=33%  Similarity=0.495  Sum_probs=144.5

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |||+++.+++ +|+++|++.|.|++|||||||++++||++|+.++++.+.  ....+|+++|||++|+|+++|+++++++
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~--~~~~~p~v~GhE~~G~Vv~vG~~v~~~~   78 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP--VKPKLPLIPGHEGVGIVEEVGPGVTHLK   78 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccc--cccccccccCCEEEEEEEEecccccCce
Confidence            7888889875 599999999999999999999999999999998876542  2357899999999999999999999999


Q ss_pred             CCCeEEEccC-cCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccchHHHHHHHH
Q 025712           94 VGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~  172 (249)
                      +||+|++.+. ..|+.|..|..+.+++|......+. ..+|+|+||+.++.++++++|++++++.|+ +.++.++++.+.
T Consensus        79 vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~~~~~~~~~~~  156 (171)
T d1rjwa1          79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LEKINEVFDRML  156 (171)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GGGHHHHHHHHH
T ss_pred             eeeEEeeccccccccccccccCCCccccccccccce-eccCccccceEecHHHEEECCCCCCHHHHH-HHHHHHHHHHHH
Confidence            9999987554 5789999999999999998777664 467999999999999999999999987665 466777777776


Q ss_pred             HcCCCCCCeEEEEc
Q 025712          173 RANVGPETNVMIMG  186 (249)
Q Consensus       173 ~~~~~~g~~vlI~G  186 (249)
                      ++.+ +|++|||+|
T Consensus       157 ~~~~-~G~tVlViG  169 (171)
T d1rjwa1         157 KGQI-NGRVVLTLE  169 (171)
T ss_dssp             TTCC-SSEEEEECC
T ss_pred             hcCC-CCCEEEEeC
Confidence            6655 599999987

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-31  Score=211.85  Aligned_cols=171  Identities=22%  Similarity=0.369  Sum_probs=146.9

Q ss_pred             cccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           12 KNQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        12 ~~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      +.++++..+.+|+   .+++++.+.++++++||||||.|++||++|++++.|.+.   ...+|+++|||++|+|+++|++
T Consensus         4 P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~---~~~~P~i~GHE~~G~Vv~vG~~   80 (192)
T d1piwa1           4 PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKVVKLGPK   80 (192)
T ss_dssp             TTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEEEEECTT
T ss_pred             CceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCC---CCCCCcCcccccccchhhcccc
Confidence            3467888888764   578888887788999999999999999999998887542   2578999999999999999999


Q ss_pred             C-CCCCCCCeEEEccC-cCCCCCccccCCCCCCCcCccccC------CCCCCCceeEEEEecCCceEECCCCCChhhhcc
Q 025712           89 V-KSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM  160 (249)
Q Consensus        89 v-~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~  160 (249)
                      + +.+++||+|...+. ..|+.|.+|+.+++++|.+....+      +...+|+|+||+.++.++++++|++++++.|++
T Consensus        81 v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal  160 (192)
T d1piwa1          81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPV  160 (192)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEES
T ss_pred             cccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHH
Confidence            8 56999999987766 479999999999999998765443      234679999999999999999999999988877


Q ss_pred             ccc-hHHHHHHHHHcCCCCCCeEEEE
Q 025712          161 CEP-LSVGVHACRRANVGPETNVMIM  185 (249)
Q Consensus       161 ~~~-~~~a~~~l~~~~~~~g~~vlI~  185 (249)
                      +.. +.+||+++++++++++++|||.
T Consensus       161 ~~~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         161 GEAGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             SHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            665 6689999999999999999974

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=6.8e-35  Score=233.28  Aligned_cols=181  Identities=26%  Similarity=0.392  Sum_probs=146.5

Q ss_pred             ceEEEEecCCCeEEEEecCCCC-------CCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTL-------GPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGS   87 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~-------~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~   87 (249)
                      ||++++++++.++++|++.|.+       +++||||||.+++||++|+.++.|..    +..+|+++|||++|+|+++|+
T Consensus         2 ~kA~v~~~~~~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~----~~~~P~v~GHE~~G~Vv~vG~   77 (201)
T d1kola1           2 NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRT----TAQVGLVLGHEITGEVIEKGR   77 (201)
T ss_dssp             EEEEEEEETTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCS----CCCTTCBCCCCEEEEEEEECT
T ss_pred             cEEEEEeCCCceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCc----ccccceeccceeeeeeecccc
Confidence            6899999999999999999865       46999999999999999999988643    357899999999999999999


Q ss_pred             CCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCcccc---------CCCCCCCceeEEEEecC--CceEECCCCCChh
Q 025712           88 EVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---------GSPPTNGSLAHKVVHPA--KLCYKLPDNVSLE  156 (249)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~--~~~~~ip~~~~~~  156 (249)
                      ++++|++||||++.+...|++|.+|+.+++++|......         .....+|+|+||+.++.  .+++++|++....
T Consensus        78 ~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~  157 (201)
T d1kola1          78 DVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAM  157 (201)
T ss_dssp             TCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHH
T ss_pred             ccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChH
Confidence            999999999999999999999999999998877543211         11245799999999975  3799999975544


Q ss_pred             hhc-cccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC
Q 025712          157 EGA-MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA  203 (249)
Q Consensus       157 ~aa-~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~  203 (249)
                      +++ +..++++++++++....+.+    ++|+|++|+.++|+||++|+
T Consensus       158 ~~~~~~~~~~~~~~a~~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         158 EKINIAEVVGVQVISLDDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HTCCHHHHHTEEEECGGGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            444 44456666666544433333    24899999999999999986

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=2.8e-31  Score=208.50  Aligned_cols=168  Identities=32%  Similarity=0.468  Sum_probs=143.0

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhccccc-----ccCCCCCceeccceEEEEEEecCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCA-----NFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~-----~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      |||+++..++ .|+++|++.|+|+++||||||.+++||++|+++++|.+..     .....+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            7899999885 5999999999999999999999999999999999886432     122478999999999999999999


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCc-eEECCCCCChhhhcc-ccchHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL-CYKLPDNVSLEEGAM-CEPLSV  166 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~~~~~~aa~-~~~~~~  166 (249)
                      ++++++||+|++.+...|+.|.+|+.+++++|.+....|. ..+|+|+||+.++..+ ++++|+..+.+.|+. +.++.+
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~-~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~  159 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE  159 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHH
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcceeee-ccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887764 4679999999997655 556655555444443 347889


Q ss_pred             HHHHHHHcCCCCCCeEEE
Q 025712          167 GVHACRRANVGPETNVMI  184 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI  184 (249)
                      +++++..+++ .|++|||
T Consensus       160 a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         160 AIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHTTCC-CSEEEEE
T ss_pred             HHHHHHhhcc-cCCceEC
Confidence            9999988876 5899987

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=213.01  Aligned_cols=171  Identities=21%  Similarity=0.267  Sum_probs=146.1

Q ss_pred             cccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           12 KNQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        12 ~~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      +++|||+++.+++ +|+++|+|.|+|+++||||||++++||++|+++++|.+.   ...+|+++|||++|+|+++|++++
T Consensus         4 ~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~---~~~~p~v~GhE~~G~V~~vG~~V~   80 (197)
T d2fzwa1           4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVGEGVT   80 (197)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             ceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcc---cccccccCCcceeeEEEeecCCce
Confidence            3559999999885 699999999999999999999999999999999998642   357899999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------------------CCCCCceeEEEEecCCceEECC
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLP  150 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~~~ip  150 (249)
                      ++++||+|++.+...|+.|.+|..+.+.+|........                    ....|+|+||+.+++.+++++|
T Consensus        81 ~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             ecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            99999999999999999999999999999976322210                    1124899999999999999999


Q ss_pred             CCCChhhhcccc-chHHHHHHHHHc-CCCCCCeEEEE
Q 025712          151 DNVSLEEGAMCE-PLSVGVHACRRA-NVGPETNVMIM  185 (249)
Q Consensus       151 ~~~~~~~aa~~~-~~~~a~~~l~~~-~~~~g~~vlI~  185 (249)
                      +++++++++.+. .+.+++.++++. .-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            999998888665 577888888553 34678888874

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.97  E-value=1.7e-30  Score=203.49  Aligned_cols=144  Identities=28%  Similarity=0.246  Sum_probs=127.2

Q ss_pred             ceEEEEecCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCC
Q 025712           15 NMAAWLLGIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEV   94 (249)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   94 (249)
                      ||++++.++++++++|.|.|.|+++|||||+++++||++|++.+.+...   ...+|+++|||++|+|+++|+++++|++
T Consensus         1 MKa~v~~~~~~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~---~~~~P~i~GhE~~G~V~~vG~~v~~~~v   77 (177)
T d1jqba1           1 MKGFAMLGINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGAL---GDRKNMILGHEAVGEVVEVGSEVKDFKP   77 (177)
T ss_dssp             CEEEEEEETTEEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTT---CCCSSEECCCCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEeCCCeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCC---CCCCCccCcceeeEEeeecccccceecC
Confidence            7899999999999999999999999999999999999999987765432   2477999999999999999999999999


Q ss_pred             CCeEEEccCcCCCCCccccCCCCCCCcCccc--cCCCCCCCceeEEEEecC--CceEECCCCCChhhhccc
Q 025712           95 GDRVALEPGISCGHCSLCKAGSYNLCPEMRF--FGSPPTNGSLAHKVVHPA--KLCYKLPDNVSLEEGAMC  161 (249)
Q Consensus        95 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~--~~~~~ip~~~~~~~aa~~  161 (249)
                      ||||++.+...|++|.+|+.+++.+|.+...  .-+...+|+|+||+.++.  .+++++|+++++++++..
T Consensus        78 GdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~  148 (177)
T d1jqba1          78 GDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTH  148 (177)
T ss_dssp             TCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEE
T ss_pred             CCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHH
Confidence            9999999999999999999999999987532  223346799999999986  478999999998887643

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.97  E-value=9.9e-32  Score=214.51  Aligned_cols=168  Identities=21%  Similarity=0.359  Sum_probs=137.4

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      -+|||+++.+++ +|+++|+|.|.|+++||||||.|++||++|+++++|.+    +..+|+++|||++|+|+++|+++++
T Consensus         7 ~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~----~~~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           7 ITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII----PSKFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             EEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             eEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecc----ccccccccceeeeeeeeecCccccc
Confidence            378999999885 79999999999999999999999999999999988754    3578999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCC--------------------CCCCceeEEEEecCCceEECCC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP--------------------PTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      +++||+|++.+...|+.|.+|+.+++.+|......+..                    ...|+|+||+.+++..++++|+
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~  162 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDP  162 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECT
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCC
Confidence            99999999999999999999999999999754332210                    1248999999999999999999


Q ss_pred             CCChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHH
Q 025712          152 NVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL  192 (249)
Q Consensus       152 ~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~  192 (249)
                      ++++..++......        ..+.+++++||.|+|.+|+
T Consensus       163 ~~~~~~~~~~~~~~--------~~v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         163 KINVNFLVSTKLTL--------DQINKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TSCGGGGEEEEECG--------GGHHHHHHHTTTSSCSEEE
T ss_pred             CCCHHHHHHhhcch--------hhcCCCCEEEEECCCcceE
Confidence            99877665433211        1122334466667776654

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.9e-30  Score=199.57  Aligned_cols=158  Identities=26%  Similarity=0.344  Sum_probs=132.1

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      |||+...+++ +|+++|++.|+|++|||||||.+++||++|+.++.|...   ...+|+++|||++|+|+++|+++++++
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~---~~~~P~i~GhE~~G~V~~vG~~V~~~~   77 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQVEKYA   77 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeec---cccccccccccccccchhhccccccCC
Confidence            5777777664 799999999999999999999999999999999988543   247899999999999999999999999


Q ss_pred             CCCeEEEccC-cCCCCCccccCCCCCCCcCccccCC-------CCCCCceeEEEEecCCceEECCCCCChhhhccccchH
Q 025712           94 VGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRFFGS-------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS  165 (249)
Q Consensus        94 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~  165 (249)
                      +||+|.+.+. .+|++|.+|+.+++++|.++...+.       ....|+|+||+.+++++++++|+..  ..+++..++.
T Consensus        78 vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~--~~~~~a~~l~  155 (179)
T d1uufa1          78 PGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVAD--IEMIRADQIN  155 (179)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCC--EEEECGGGHH
T ss_pred             CCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCC--cChhHhchhH
Confidence            9999987765 5999999999999999998643321       1346999999999999999998654  3344456778


Q ss_pred             HHHHHHHHcCCC
Q 025712          166 VGVHACRRANVG  177 (249)
Q Consensus       166 ~a~~~l~~~~~~  177 (249)
                      ++++++.++.++
T Consensus       156 ~a~~a~~~a~v~  167 (179)
T d1uufa1         156 EAYERMLRGDVK  167 (179)
T ss_dssp             HHHHHHHTTCSS
T ss_pred             HHHHHHHHhCcc
Confidence            899888776554

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=4.6e-29  Score=199.07  Aligned_cols=168  Identities=22%  Similarity=0.317  Sum_probs=137.7

Q ss_pred             ccceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           13 NQNMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        13 ~~~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      .++||+++..++ +|+++|++.|.|+++||||||.+++||++|++.+.|.+    +..+|+++|||++|+|+++|+++++
T Consensus         7 ~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~----~~~~P~i~GHE~~G~Vv~vG~~v~~   82 (198)
T d2jhfa1           7 IKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL----VTPLPVIAGHEAAGIVESIGEGVTT   82 (198)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSS----CCCSSBCCCCSEEEEEEEECTTCCS
T ss_pred             eEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCc----ccccceecccceeEEEEecCccccC
Confidence            568999988664 69999999999999999999999999999999998753    3578999999999999999999999


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCC--------------------CCCCCceeEEEEecCCceEECCC
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPD  151 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~~~ip~  151 (249)
                      +++||+|++.+...|+.|.+|+.+...+|........                    ....|+|+||.++++.+++++|+
T Consensus        83 ~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~  162 (198)
T d2jhfa1          83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDA  162 (198)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCT
T ss_pred             cCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCC
Confidence            9999999999999999999999999999987544321                    01248999999999999999999


Q ss_pred             CCChhhhccc-cchHHHHHHHHHcCCCCCCeEEEEc
Q 025712          152 NVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMG  186 (249)
Q Consensus       152 ~~~~~~aa~~-~~~~~a~~~l~~~~~~~g~~vlI~G  186 (249)
                      +++++.++.. .++.....+.  ..+++|++|+|+.
T Consensus       163 ~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~VaVi~  196 (198)
T d2jhfa1         163 AFALDPLITHVLPFEKINEGF--DLLRSGESIRTIL  196 (198)
T ss_dssp             TSCCGGGEEEEEEGGGHHHHH--HHHHTTCCSEEEE
T ss_pred             CCCHHHHHHHHHHHHhhhhCC--ceeeCCCEEEEEE
Confidence            9887655532 2333222222  2357888888753

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8e-28  Score=183.53  Aligned_cols=142  Identities=20%  Similarity=0.294  Sum_probs=122.1

Q ss_pred             ceEEEEe---cCCCeEEE-EecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           15 NMAAWLL---GIKTLKIQ-PYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        15 ~~~~~~~---~~~~l~~~-~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      ||+++++   +|+.|+++ ++|.|.|++|||||||++++||++|...++|.+.  .....|.++|||++|+|+++|++++
T Consensus         3 MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           3 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS--RKPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSS--CCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             eeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcC--ccccccccCccceeeeeEeecceee
Confidence            5677777   56679886 6899999999999999999999999999887653  2357889999999999999999999


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~  169 (249)
                      +|++||+|+..+                           ...|+|+||+.++.++++++|+++++++|++++ ...++++
T Consensus        81 ~~~vGdrV~~~~---------------------------~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~  133 (150)
T d1yb5a1          81 AFKKGDRVFTSS---------------------------TISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAH  133 (150)
T ss_dssp             TCCTTCEEEESC---------------------------CSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHH
T ss_pred             ccccCccccccc---------------------------cccccccccccccccccccccCCCCHHHHHHhhhhhhhehh
Confidence            999999998652                           256999999999999999999999999998776 4567776


Q ss_pred             HH-HHcCCCCCCeEEEE
Q 025712          170 AC-RRANVGPETNVMIM  185 (249)
Q Consensus       170 ~l-~~~~~~~g~~vlI~  185 (249)
                      .+ ..+....|+++||+
T Consensus       134 ~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         134 ENIIHGSGATGKMILLL  150 (150)
T ss_dssp             HHHHHSSCCSSEEEEEC
T ss_pred             hheEEcCcccCCEEEEC
Confidence            65 66788999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.3e-26  Score=176.28  Aligned_cols=133  Identities=22%  Similarity=0.262  Sum_probs=114.5

Q ss_pred             cCCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCCCCCeEEEc
Q 025712           22 GIKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE  101 (249)
Q Consensus        22 ~~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  101 (249)
                      +|+.|+++|.+.|.|+++||||||+|+++|++|+.+++|.+.   ...+|.++|+|++|+|+++|+++++|++||+|+..
T Consensus        11 ~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~   87 (147)
T d1qora1          11 GPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYA   87 (147)
T ss_dssp             SGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEES
T ss_pred             CCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCC---CCcceeeeccccccceeeeeeecccccccceeeee
Confidence            456799999999999999999999999999999999988653   25789999999999999999999999999999753


Q ss_pred             cCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccc--c-chHHHHHHHHHcCCCC
Q 025712          102 PGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC--E-PLSVGVHACRRANVGP  178 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~--~-~~~~a~~~l~~~~~~~  178 (249)
                                                 ....|+|+||..++.+.++++|++++++++++.  + ..+++++++...++++
T Consensus        88 ---------------------------~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~  140 (147)
T d1qora1          88 ---------------------------QSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQ  140 (147)
T ss_dssp             ---------------------------CCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCC
T ss_pred             ---------------------------ccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                                       125699999999999999999999988765433  3 4567777776678999


Q ss_pred             CCeEEE
Q 025712          179 ETNVMI  184 (249)
Q Consensus       179 g~~vlI  184 (249)
                      |++|||
T Consensus       141 G~~VLI  146 (147)
T d1qora1         141 GSSLLI  146 (147)
T ss_dssp             BCCEEE
T ss_pred             CCEEEe
Confidence            999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=2.8e-25  Score=169.64  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             cccceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCC
Q 025712           12 KNQNMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSE   88 (249)
Q Consensus        12 ~~~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~   88 (249)
                      |.++||+++..++   .+++++++.|+|++|||||||++++||++|+..+.+.+  ......|+++|+|++|+|++  ..
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~--~~~~~~p~v~g~e~~G~v~~--~~   76 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDG--KIVKTYPFVPGIDLAGVVVS--SQ   76 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGG--SSCCSSSBCCCSEEEEEEEE--CC
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcc--cccccccceeeeeeeeeeec--cC
Confidence            3568899988665   47789999999999999999999999999998887754  23357899999999999998  55


Q ss_pred             CCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHH
Q 025712           89 VKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVG  167 (249)
Q Consensus        89 v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a  167 (249)
                      ++.+++||+|+....                      .....++|+|+||+.++.++++++|++++. +|+++. ...++
T Consensus        77 ~~~~~~g~~v~~~~~----------------------~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta  133 (152)
T d1xa0a1          77 HPRFREGDEVIATGY----------------------EIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQ  133 (152)
T ss_dssp             SSSCCTTCEEEEEST----------------------TBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHH
T ss_pred             CCccccCCEEEEecC----------------------ccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHH
Confidence            678999999985421                      001235799999999999999999999985 566555 44566


Q ss_pred             HHHH-HHcCCCCCCeEEEEc
Q 025712          168 VHAC-RRANVGPETNVMIMG  186 (249)
Q Consensus       168 ~~~l-~~~~~~~g~~vlI~G  186 (249)
                      +.++ .+.+++ |++|||+|
T Consensus       134 ~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         134 ALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             HHHHHHHTCCC-SEEEEECC
T ss_pred             HHHHHHhcCCC-CCEEEEcC
Confidence            6555 667765 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=7e-25  Score=163.02  Aligned_cols=129  Identities=19%  Similarity=0.182  Sum_probs=110.8

Q ss_pred             ceEEEEecCC-CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCCCC
Q 025712           15 NMAAWLLGIK-TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLE   93 (249)
Q Consensus        15 ~~~~~~~~~~-~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   93 (249)
                      ||++++.+++ .++++|++.|.|+++|||||+++++||++|+.+++|.+.  ....+|+++|+|++|+|           
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~--~~~~~P~v~G~E~~G~V-----------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYL--TRLHPPFIPGMEVVGVV-----------   67 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCCEEEEEE-----------
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEecccccccccccccc--ccccceeEeeeeeEEee-----------
Confidence            6788888875 599999999999999999999999999999999988653  23478999999999999           


Q ss_pred             CCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhcccc-chHHHHHHHH
Q 025712           94 VGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR  172 (249)
Q Consensus        94 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~  172 (249)
                      +||+|+.+.                            .+|+|+||+.++++.++++|+++++++|+.+. .+.|||+++.
T Consensus        68 vGd~V~~~~----------------------------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~  119 (131)
T d1iz0a1          68 EGRRYAALV----------------------------PQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALL  119 (131)
T ss_dssp             TTEEEEEEC----------------------------SSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTT
T ss_pred             ccceEEEEe----------------------------ccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            399998652                            56999999999999999999999999999776 5779999984


Q ss_pred             HcCCCCCCeEEEE
Q 025712          173 RANVGPETNVMIM  185 (249)
Q Consensus       173 ~~~~~~g~~vlI~  185 (249)
                      + +.+.|++||++
T Consensus       120 ~-~g~~g~tvl~l  131 (131)
T d1iz0a1         120 D-RGHTGKVVVRL  131 (131)
T ss_dssp             C-TTCCBEEEEEC
T ss_pred             h-cccCCCEEEEC
Confidence            3 23569999863

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.90  E-value=2.6e-26  Score=179.29  Aligned_cols=156  Identities=17%  Similarity=0.114  Sum_probs=125.5

Q ss_pred             ccceEEEEecCC------CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccc-------cCCCCCceeccceE
Q 025712           13 NQNMAAWLLGIK------TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCAN-------FIVKKPMVIGHECA   79 (249)
Q Consensus        13 ~~~~~~~~~~~~------~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~-------~~~~~p~~~G~e~~   79 (249)
                      .++|++++++++      .++..++|.|+|+++||||||++++||++|+++++|.+...       .....|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            468899988653      24556788889999999999999999999999998764322       11367889999999


Q ss_pred             EEEEEecCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhc
Q 025712           80 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA  159 (249)
Q Consensus        80 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa  159 (249)
                      |+|++.|.++..++.||+|....                           ...|+|+||+.+++++++++|++++...++
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~---------------------------~~~g~~aey~~v~~~~~~~iP~~~~~~~a~  134 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSH---------------------------VNFGTWRTHALGNDDDFIKLPNPAQSKANG  134 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESS---------------------------SCCCCSBSEEEEEGGGEEEECCHHHHHHTT
T ss_pred             cccccccccccccccccceeccc---------------------------cccccccceeeehhhhccCCCccchhhhhc
Confidence            99999999999999999998652                           356899999999999999999988755555


Q ss_pred             cccchHHHHHHHH--HcCCCCCCeEEEEc-C-ChHHHHHHH
Q 025712          160 MCEPLSVGVHACR--RANVGPETNVMIMG-S-GPIGLVTLL  196 (249)
Q Consensus       160 ~~~~~~~a~~~l~--~~~~~~g~~vlI~G-~-g~vG~~ai~  196 (249)
                      ...+ .++|+++.  ..++++|+++||.| + |++|++++|
T Consensus       135 ~~~~-~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         135 KPNG-LTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             CSCC-CCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             cchH-HHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            4433 35566653  36789999999986 4 789988776

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-22  Score=153.47  Aligned_cols=128  Identities=18%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             ceEEEEecCC---CeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCCC
Q 025712           15 NMAAWLLGIK---TLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS   91 (249)
Q Consensus        15 ~~~~~~~~~~---~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   91 (249)
                      |||+++..++   .+++++++.|+|++|||||||.|++||+.|.....|.+.  .....|+++|+|++|+|+++|.+  .
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~--~~~~~p~v~G~e~~G~V~~~~~~--~   76 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGK--IIRNFPMIPGIDFAGTVRTSEDP--R   76 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSS--CCCSSSBCCCSEEEEEEEEECST--T
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecc--cccccceeccccccccceeeccC--C
Confidence            6888888654   488999999999999999999999999999988887642  23578999999999999998764  6


Q ss_pred             CCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccch-HHHH
Q 025712           92 LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL-SVGV  168 (249)
Q Consensus        92 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~-~~a~  168 (249)
                      ++.||+|+.....                      -+...+|+|+||+.++.++++++|+++++++|++++.. .+|+
T Consensus        77 ~~~g~~v~~~~~~----------------------~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~  132 (146)
T d1o89a1          77 FHAGQEVLLTGWG----------------------VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEA  132 (146)
T ss_dssp             CCTTCEEEEECTT----------------------BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHH
T ss_pred             ccceeeEEeeccc----------------------ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999864210                      01235799999999999999999999999999988753 3443

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=9e-25  Score=168.56  Aligned_cols=147  Identities=18%  Similarity=0.168  Sum_probs=116.4

Q ss_pred             cceEEEEecC---CCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEecCCCC
Q 025712           14 QNMAAWLLGI---KTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVK   90 (249)
Q Consensus        14 ~~~~~~~~~~---~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   90 (249)
                      .+|++++..+   ..|++++++.|++++|||||||+|++||++|+..+.+.+.  .....|.++|+|++|+|++  +.++
T Consensus         3 ~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~--~~~~~~~~~g~e~~G~v~~--~~~~   78 (162)
T d1tt7a1           3 LFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGN--IVREYPLILGIDAAGTVVS--SNDP   78 (162)
T ss_dssp             EEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCT--TCSSCSEECCSEEEEEEEE--CSST
T ss_pred             cEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeeccc--ccccceeeeeeeccccccc--cccc
Confidence            4677777754   4699999999999999999999999999999988887643  2356788999999999998  5667


Q ss_pred             CCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChhhhccccc-hHHHHH
Q 025712           91 SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVH  169 (249)
Q Consensus        91 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~a~~  169 (249)
                      ++++||+|+..+..                      -+...+|+|+||+.+++++++++|+++++++|++++. ..++|.
T Consensus        79 ~~~~g~~v~~~~~~----------------------~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~  136 (162)
T d1tt7a1          79 RFAEGDEVIATSYE----------------------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDRE  136 (162)
T ss_dssp             TCCTTCEEEEESTT----------------------BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEE
T ss_pred             ccccceeeEeeecc----------------------ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            89999999865321                      0123679999999999999999999999999998775 446665


Q ss_pred             HHHHcCCCCCCeEEEEc
Q 025712          170 ACRRANVGPETNVMIMG  186 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G  186 (249)
                      ++.......+++|||+|
T Consensus       137 ~~~~~~~~~~~~Vli~g  153 (162)
T d1tt7a1         137 VSLEETPGALKDILQNR  153 (162)
T ss_dssp             ECSTTHHHHHHHTTTTC
T ss_pred             HHHhcCCCCCCEEEEEC
Confidence            54333344556677766

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.69  E-value=4.3e-17  Score=126.36  Aligned_cols=92  Identities=23%  Similarity=0.337  Sum_probs=85.2

Q ss_pred             CChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          153 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++++|++++ +++|+|++++.+++++|++|+|+|+|++|++++|++|.+|+.+|++++.+++|+++++++|+++++|++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~   80 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYK   80 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGG
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcccccccc
Confidence            4688999774 789999999999999999999999999999999999999998899999999999999999999999987


Q ss_pred             CCcccHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (249)
                      +  +++.+.++++|+
T Consensus        81 ~--~~~~~~v~~~t~   93 (174)
T d1jqba2          81 N--GHIEDQVMKLTN   93 (174)
T ss_dssp             G--SCHHHHHHHHTT
T ss_pred             c--hhHHHHHHHHhh
Confidence            6  789999998875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.6e-17  Score=127.16  Aligned_cols=92  Identities=21%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             CChhhhcccc-chHHHHHHHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          153 VSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      +++++||+++ ...|||+++.+ .++++|++|||+| +|++|++++|+|+..|+ +|++++++++|+++++++|++++||
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            4789999877 46699999954 7899999999997 68899999999999999 8999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHHH
Q 025712          230 VSTDIEMWGRYKMQWVQA  247 (249)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~  247 (249)
                      +++  ++|.++++++|+.
T Consensus        80 ~~~--~d~~~~v~~~t~g   95 (179)
T d1qora2          80 YRE--EDLVERLKEITGG   95 (179)
T ss_dssp             TTT--SCHHHHHHHHTTT
T ss_pred             CCC--CCHHHHHHHHhCC
Confidence            887  8999999998854

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-16  Score=121.59  Aligned_cols=91  Identities=25%  Similarity=0.305  Sum_probs=82.0

Q ss_pred             CChhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEec
Q 025712          153 VSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  229 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~  229 (249)
                      +++++||+++ +..|||+++ +..++++|++|||+| +|++|++++|+++.+|+ ++++++++++|+++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            4788999777 688999998 557899999999998 69999999999999999 7898888999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHH
Q 025712          230 VSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       230 ~~~~~~~~~~~~~~~~~  246 (249)
                      +++  +++.+.+++.++
T Consensus        80 ~~~--~~~~~~i~~~t~   94 (174)
T d1yb5a2          80 HRE--VNYIDKIKKYVG   94 (174)
T ss_dssp             TTS--TTHHHHHHHHHC
T ss_pred             ccc--ccHHHHhhhhhc
Confidence            886  789999988775

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.64  E-value=4.6e-15  Score=111.24  Aligned_cols=131  Identities=14%  Similarity=0.021  Sum_probs=94.6

Q ss_pred             ccceEEEEec-------CCCeEEEEecCCCCCCCcEEEEEeEEecccchHhhHhcccccccCCCCCceeccceEEEEEEe
Q 025712           13 NQNMAAWLLG-------IKTLKIQPYHLPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEV   85 (249)
Q Consensus        13 ~~~~~~~~~~-------~~~l~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~v   85 (249)
                      .++|++++..       ++.|+++|.+.|+|++||||||++|.++++.......       +....-++..+++|+|++ 
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~-------~~~~g~~~~g~~vg~Vv~-   73 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK-------RLKEGAVMMGQQVARVVE-   73 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG-------GSCTTSBCCCCEEEEEEE-
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc-------ccccCCccccceEEEEEE-
Confidence            4567777763       2359999999999999999999999999886443221       123333566688999988 


Q ss_pred             cCCCCCCCCCCeEEEccCcCCCCCccccCCCCCCCcCccccCCCCCCCceeEEEEecCCceEECCCCCChh-----hhcc
Q 025712           86 GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLE-----EGAM  160 (249)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~-----~aa~  160 (249)
                       ++.++|++||+|..                               .++|+||.+++...+.++|++.+..     ..++
T Consensus        74 -S~~~~f~~GD~V~g-------------------------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~  121 (147)
T d1v3va1          74 -SKNSAFPAGSIVLA-------------------------------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVT  121 (147)
T ss_dssp             -ESCTTSCTTCEEEE-------------------------------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEE
T ss_pred             -eCCCcccCCCEEEE-------------------------------ccCCEeEEEeccceeeEccccccccccchhhhHh
Confidence             67788999999974                               3789999999999999998764322     2223


Q ss_pred             cc-chHH-HHHHHHHcCCCCCCeEEE
Q 025712          161 CE-PLSV-GVHACRRANVGPETNVMI  184 (249)
Q Consensus       161 ~~-~~~~-a~~~l~~~~~~~g~~vlI  184 (249)
                      +. ...+ ||..+ ....+.|++||+
T Consensus       122 lG~~Gmtaay~gl-~~~~k~Getvv~  146 (147)
T d1v3va1         122 KGFENMPAAFIEM-LNGANLGKAVVT  146 (147)
T ss_dssp             ECGGGHHHHHHHH-HTTCCSSEEEEE
T ss_pred             ccccchHHHHHHh-hCCCCCCCEEEe
Confidence            32 3344 55454 333578999987

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.63  E-value=2e-15  Score=115.74  Aligned_cols=90  Identities=28%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             CChhhhccccc-hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          153 VSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++++||.+++ ..|+|++++++++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++|++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCcccccccc
Confidence            47889997774 6699999998999999999999999999999999999998 899999999999999999999999988


Q ss_pred             CCcccHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (249)
                      .  +++.+.+.+.+
T Consensus        80 ~--~~~~~~~~~~~   91 (166)
T d1llua2          80 Q--EDPVEAIQRDI   91 (166)
T ss_dssp             T--SCHHHHHHHHH
T ss_pred             c--hhHHHHHHHhh
Confidence            6  77777777654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=116.99  Aligned_cols=88  Identities=48%  Similarity=0.794  Sum_probs=79.6

Q ss_pred             CChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       153 ~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +++++||++.+++++|++++++++++|++|+|+|+|++|++++|+++++|+++|++++.+++|+++++++|++++++++.
T Consensus         1 vS~e~Aal~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~   80 (171)
T d1pl8a2           1 VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK   80 (171)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc
Confidence            46889999999999999999999999999999999999999999999999988999999999999999999999999886


Q ss_pred             CcccHHHHHH
Q 025712          233 DIEMWGRYKM  242 (249)
Q Consensus       233 ~~~~~~~~~~  242 (249)
                        +++.+..+
T Consensus        81 --~~~~~~~~   88 (171)
T d1pl8a2          81 --ESPQEIAR   88 (171)
T ss_dssp             --CCHHHHHH
T ss_pred             --cccccccc
Confidence              44443333

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.62  E-value=7.3e-16  Score=119.24  Aligned_cols=91  Identities=22%  Similarity=0.362  Sum_probs=79.0

Q ss_pred             Chhhhccccc-hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++||++.+ ..|+|+++ +++++++|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++++|++++||+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            5678888875 77999998 568999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCcccHHHHHHHH
Q 025712          232 TDIEMWGRYKMQW  244 (249)
Q Consensus       232 ~~~~~~~~~~~~~  244 (249)
                      +.+++..+.+++.
T Consensus        82 ~~~~~~~~~~~~~   94 (176)
T d2fzwa2          82 DFSKPIQEVLIEM   94 (176)
T ss_dssp             GCSSCHHHHHHHH
T ss_pred             chhhHHHHHHHHH
Confidence            6545555555544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.62  E-value=2.2e-15  Score=115.90  Aligned_cols=92  Identities=51%  Similarity=0.726  Sum_probs=81.6

Q ss_pred             CChhhhccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          153 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       153 ~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +++++||++.+++++|+++++.++++|++|+|+|+|++|++++|+++.+|+ +|++++.+++|+++++++|++++++++.
T Consensus         1 VS~e~Aal~ePla~a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~   79 (170)
T d1e3ja2           1 VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP   79 (170)
T ss_dssp             SCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccc
Confidence            478999999999999999999999999999999999999999999999999 8999999999999999999999888776


Q ss_pred             CcccHHHHHHHHH
Q 025712          233 DIEMWGRYKMQWV  245 (249)
Q Consensus       233 ~~~~~~~~~~~~~  245 (249)
                      ...+..+...+++
T Consensus        80 ~~~~~~~~~~~~~   92 (170)
T d1e3ja2          80 AKEEESSIIERIR   92 (170)
T ss_dssp             TTSCHHHHHHHHH
T ss_pred             cccccchhhhhhh
Confidence            5555555554444

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.60  E-value=1.7e-15  Score=117.19  Aligned_cols=90  Identities=22%  Similarity=0.265  Sum_probs=76.7

Q ss_pred             hhhhccccc-hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          155 LEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       155 ~~~aa~~~~-~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.+||++.+ +.|+|+++ +.+++++|++|+|+|+|++|++++|+++++|+.+|++++.+++|+++++++|++++||+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            456777774 77999997 6689999999999999999999999999999989999999999999999999999999887


Q ss_pred             CcccHHHHHHHH
Q 025712          233 DIEMWGRYKMQW  244 (249)
Q Consensus       233 ~~~~~~~~~~~~  244 (249)
                      .+..+.+.....
T Consensus        82 ~d~~~~~~~~~~   93 (174)
T d1p0fa2          82 YDKPIYEVICEK   93 (174)
T ss_dssp             CSSCHHHHHHHH
T ss_pred             chhHHHHHHHHh
Confidence            544444444433

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=6e-15  Score=113.05  Aligned_cols=92  Identities=26%  Similarity=0.318  Sum_probs=83.1

Q ss_pred             CChhhhccccc-hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          153 VSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++++||+++. ..|+|++++..++++|++|+|+|+|++|++++++++..|+ +|++++++++|+++++++|+++++++.
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceecccc
Confidence            47899998874 6689999999999999999999999999999999999999 799999999999999999999999988


Q ss_pred             CCcccHHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQA  247 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~~  247 (249)
                      +  +++.+.+++.++.
T Consensus        80 ~--~~~~~~~~~~~~~   93 (168)
T d1rjwa2          80 K--EDAAKFMKEKVGG   93 (168)
T ss_dssp             T--SCHHHHHHHHHSS
T ss_pred             c--chhhhhcccccCC
Confidence            7  7888888877653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.57  E-value=6e-15  Score=114.26  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=80.1

Q ss_pred             Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++.|+.+. .+.|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+.+||+++.+++|+++++++||+++||++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            578899888 477999997 668999999999999999999999999999988999999999999999999999999977


Q ss_pred             CCcccHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (249)
                      +. +.+.+.+.+.+.
T Consensus        83 ~~-~~~~~~~~~~~~   96 (176)
T d1d1ta2          83 DS-TKPISEVLSEMT   96 (176)
T ss_dssp             GC-SSCHHHHHHHHH
T ss_pred             cc-chHHHHHHHHhc
Confidence            52 344566666554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.57  E-value=8e-15  Score=113.30  Aligned_cols=91  Identities=29%  Similarity=0.381  Sum_probs=81.2

Q ss_pred             Chhhhccccc-hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++.|+.+++ ..|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+.++++++.+++|+++++++|+++++|++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~   81 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSK   81 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETT
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCC
Confidence            4567777775 67899886 668999999999999999999999999999998888999999999999999999999987


Q ss_pred             CCcccHHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWVQ  246 (249)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (249)
                      +  +++.++++++++
T Consensus        82 ~--~~~~~~i~~~t~   94 (174)
T d1f8fa2          82 T--QDPVAAIKEITD   94 (174)
T ss_dssp             T--SCHHHHHHHHTT
T ss_pred             C--cCHHHHHHHHcC
Confidence            6  789999988764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.56  E-value=1.2e-14  Score=112.37  Aligned_cols=90  Identities=24%  Similarity=0.347  Sum_probs=77.3

Q ss_pred             Chhhhccccc-hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++||++.+ +.|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++|++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            5678888875 77999887 679999999999999999999999999999998899999999999999999999999987


Q ss_pred             CCcccHHHHHHHH
Q 025712          232 TDIEMWGRYKMQW  244 (249)
Q Consensus       232 ~~~~~~~~~~~~~  244 (249)
                      ..++.. +.+.+.
T Consensus        82 ~~~~~~-~~~~~~   93 (174)
T d1e3ia2          82 ELDKPV-QDVITE   93 (174)
T ss_dssp             GCSSCH-HHHHHH
T ss_pred             cchhhh-hhhHhh
Confidence            643333 334333

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4e-15  Score=115.70  Aligned_cols=88  Identities=18%  Similarity=0.283  Sum_probs=78.1

Q ss_pred             hhhcccc-chHHHHHHH-HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          156 EEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       156 ~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++||+++ ++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +++++.+++++.++++++|+++++|+++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            3567666 678999998 557899999999997 69999999999999999 7888888999999999999999999876


Q ss_pred             CcccHHHHHHHHHH
Q 025712          233 DIEMWGRYKMQWVQ  246 (249)
Q Consensus       233 ~~~~~~~~~~~~~~  246 (249)
                        +++.+.++++|.
T Consensus        80 --~~~~~~v~~~t~   91 (183)
T d1pqwa_          80 --VDFADEILELTD   91 (183)
T ss_dssp             --STHHHHHHHHTT
T ss_pred             --cCHHHHHHHHhC
Confidence              899999998875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=1.7e-14  Score=113.51  Aligned_cols=86  Identities=27%  Similarity=0.438  Sum_probs=79.4

Q ss_pred             ccccchHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHH
Q 025712          159 AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWG  238 (249)
Q Consensus       159 a~~~~~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~  238 (249)
                      ++..++.++|++++++++++|++|||+|+|++|++++++++.+|+.+|++++.+++|+++++++|+++++++..  +++.
T Consensus         6 ~l~d~~~ta~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~--~~~~   83 (195)
T d1kola2           6 CLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD--TPLH   83 (195)
T ss_dssp             GGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS--SCHH
T ss_pred             hcccHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC--cCHH
Confidence            34447999999999999999999999999999999999999999989999999999999999999999998776  8999


Q ss_pred             HHHHHHHH
Q 025712          239 RYKMQWVQ  246 (249)
Q Consensus       239 ~~~~~~~~  246 (249)
                      +.+.++|+
T Consensus        84 ~~i~~~t~   91 (195)
T d1kola2          84 EQIAALLG   91 (195)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99988875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=5.5e-15  Score=113.94  Aligned_cols=79  Identities=28%  Similarity=0.454  Sum_probs=72.4

Q ss_pred             CChhhhcccc-chHHHHHHHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      +++++||.++ ...|||+++++.++++|++|||+| +|++|++++|+||.+|+ ++++++++++|+++++++|+++++|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeeeh
Confidence            4788999777 578999999889999999999998 69999999999999999 89999999999999999999999987


Q ss_pred             CC
Q 025712          231 ST  232 (249)
Q Consensus       231 ~~  232 (249)
                      .+
T Consensus        80 ~~   81 (171)
T d1iz0a2          80 AE   81 (171)
T ss_dssp             GG
T ss_pred             hh
Confidence            63

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.54  E-value=1.7e-14  Score=112.23  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             cccchHHHHHHHH-HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccH
Q 025712          160 MCEPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMW  237 (249)
Q Consensus       160 ~~~~~~~a~~~l~-~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~  237 (249)
                      +..+..|||+++. .+++++|++|||+| +|++|++++|+||..|+ +||++++++++.++++++|++++|++++  +++
T Consensus        10 lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--~~~   86 (182)
T d1v3va2          10 IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--VNS   86 (182)
T ss_dssp             TSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--CSC
T ss_pred             HhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc--ccH
Confidence            3335779999984 68999999999998 68999999999999999 8999999999999999999999999876  777


Q ss_pred             HHHHHHHH
Q 025712          238 GRYKMQWV  245 (249)
Q Consensus       238 ~~~~~~~~  245 (249)
                      .+.+.+.+
T Consensus        87 ~~~~~~~~   94 (182)
T d1v3va2          87 LEEALKKA   94 (182)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.53  E-value=6.5e-15  Score=113.90  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             CChhhhcccc-chHHHHHHHH----HcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          153 VSLEEGAMCE-PLSVGVHACR----RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~----~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +++++||+++ +..|||.+++    ..+.++|++|||+| +|+||.+++|+||..|+ +|+++.++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            5789999888 4679997653    36788999999998 79999999999999999 7999999999999999999999


Q ss_pred             EecCCC
Q 025712          227 TAKVST  232 (249)
Q Consensus       227 vi~~~~  232 (249)
                      ++|++.
T Consensus        80 vi~~~~   85 (176)
T d1xa0a2          80 VLARED   85 (176)
T ss_dssp             EEECC-
T ss_pred             eeecch
Confidence            999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.52  E-value=3.8e-14  Score=109.31  Aligned_cols=91  Identities=22%  Similarity=0.356  Sum_probs=78.8

Q ss_pred             Chhhhcccc-chHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~-~~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++||++. .+.|+|+++ +.+++++|++|+|+|+|++|.+++++++..|+.+|++++++++|+++++++||+++||++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            567888888 477999998 668999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCcccHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (249)
                      ++ .++.+.+++.+
T Consensus        82 ~~-~~~~~~~~~~~   94 (175)
T d1cdoa2          82 DH-SEPISQVLSKM   94 (175)
T ss_dssp             GC-SSCHHHHHHHH
T ss_pred             Cc-chhHHHHHHhh
Confidence            63 34555555554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.6e-14  Score=109.68  Aligned_cols=84  Identities=24%  Similarity=0.270  Sum_probs=72.6

Q ss_pred             Chhhhccccc-hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          154 SLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      +.+.||.+.+ ..|+|+++++.++++|++|+|+|+|++|++++|++|.+|+ ++++++++++|+++++++|+++++|+.+
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~   80 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLE   80 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeeccc
Confidence            3455665554 5689999999999999999999999999999999999999 7999999999999999999999998775


Q ss_pred             CcccHHH
Q 025712          233 DIEMWGR  239 (249)
Q Consensus       233 ~~~~~~~  239 (249)
                      + .++.+
T Consensus        81 ~-~~~~~   86 (168)
T d1piwa2          81 E-GDWGE   86 (168)
T ss_dssp             T-SCHHH
T ss_pred             h-HHHHH
Confidence            3 35543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=4.2e-14  Score=109.91  Aligned_cols=90  Identities=28%  Similarity=0.365  Sum_probs=74.6

Q ss_pred             hhhcccc-chHHHHHHHHH-cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCC
Q 025712          156 EEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD  233 (249)
Q Consensus       156 ~~aa~~~-~~~~a~~~l~~-~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~  233 (249)
                      +.+|.+. ...|||+++.+ .++++|++|||+|+|++|++++|+++++|+.+|++++++++|+++++++|+++++|++++
T Consensus         4 ~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~   83 (182)
T d1vj0a2           4 DVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRET   83 (182)
T ss_dssp             HHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTS
T ss_pred             HHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecccc
Confidence            4445444 46799999954 789999999999999999999999999999889999999999999999999999998873


Q ss_pred             c-ccHHHHHHHHH
Q 025712          234 I-EMWGRYKMQWV  245 (249)
Q Consensus       234 ~-~~~~~~~~~~~  245 (249)
                      + .++.+.+.+++
T Consensus        84 ~~~~~~~~i~~~~   96 (182)
T d1vj0a2          84 SVEERRKAIMDIT   96 (182)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHhh
Confidence            2 24455555554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.51  E-value=3.7e-14  Score=109.59  Aligned_cols=89  Identities=24%  Similarity=0.354  Sum_probs=76.8

Q ss_pred             Chhhhccccc-hHHHHHHH-HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          154 SLEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       154 ~~~~aa~~~~-~~~a~~~l-~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ++++||.+++ ..|+|+++ +.+++++|++|+|+|+|++|++++++++.+|+.+|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            5678888885 67999997 668999999999999999999999999999988999999999999999999999999876


Q ss_pred             CCcccHHHHHH
Q 025712          232 TDIEMWGRYKM  242 (249)
Q Consensus       232 ~~~~~~~~~~~  242 (249)
                      +.++...+.+.
T Consensus        82 ~~~~~~~~~~~   92 (176)
T d2jhfa2          82 DYKKPIQEVLT   92 (176)
T ss_dssp             GCSSCHHHHHH
T ss_pred             CchhHHHHHHH
Confidence            64344444433

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.51  E-value=6e-14  Score=107.73  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=82.4

Q ss_pred             CChhhhccccc-hHHHHHHHHHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          153 VSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~l~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      +++.+||.+++ ..|||+++++.+++++++|+|+| +|++|++++|+++.+|...|++++.+++|+++++++|+++++|+
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc
Confidence            46788887775 66899999999999999999998 69999999999999998799999999999999999999999998


Q ss_pred             CCCcccHHHHHHHHHH
Q 025712          231 STDIEMWGRYKMQWVQ  246 (249)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (249)
                      +.  +++.+++++.+.
T Consensus        81 ~~--~~~~~~~~~~~~   94 (170)
T d1jvba2          81 SM--QDPLAEIRRITE   94 (170)
T ss_dssp             TT--SCHHHHHHHHTT
T ss_pred             CC--cCHHHHHHHHhh
Confidence            76  788888877653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=7.1e-14  Score=107.21  Aligned_cols=79  Identities=24%  Similarity=0.275  Sum_probs=69.1

Q ss_pred             CChhhhccccc-hHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          153 VSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      .++..+|.+.+ ..|+|+++++.++++|++|+|+|+|++|++++|++|++|+ ++|+++++++++++++++|+++++|++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~   82 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSR   82 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETT
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECc
Confidence            34455554554 4588999999999999999999999999999999999999 677888999999999999999999988


Q ss_pred             C
Q 025712          232 T  232 (249)
Q Consensus       232 ~  232 (249)
                      +
T Consensus        83 ~   83 (168)
T d1uufa2          83 N   83 (168)
T ss_dssp             C
T ss_pred             h
Confidence            6

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.44  E-value=3.8e-13  Score=103.42  Aligned_cols=88  Identities=24%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             hhhhcccc-chHHHHHHHHHc--CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          155 LEEGAMCE-PLSVGVHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       155 ~~~aa~~~-~~~~a~~~l~~~--~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +.++|.++ ...|+|+++.+.  .+++|++|+|+|+|++|++++|+++.+|+.++++++.+++|+++++++|+++++|++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            44566555 578999999663  589999999999999999999999999998899999999999999999999999987


Q ss_pred             CCcccHHHHHHHHH
Q 025712          232 TDIEMWGRYKMQWV  245 (249)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (249)
                      +   +..+.+.+.+
T Consensus        86 ~---~~~~~~~~~~   96 (172)
T d1h2ba2          86 R---DPVKQVMELT   96 (172)
T ss_dssp             S---CHHHHHHHHT
T ss_pred             c---cHHHHHHHhh
Confidence            4   3444444444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.7e-13  Score=106.90  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CChhhhccccchHHHHHHH-HHcCCCCC--CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCCCEE
Q 025712          153 VSLEEGAMCEPLSVGVHAC-RRANVGPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADET  227 (249)
Q Consensus       153 ~~~~~aa~~~~~~~a~~~l-~~~~~~~g--~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga~~v  227 (249)
                      +++.+.++-.+..|||.++ +..++++|  ++|||+| +|++|++++|+||.+|+.+|+++++++++.. +.+++|++++
T Consensus         2 ~~~~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~v   81 (187)
T d1vj1a2           2 LSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAA   81 (187)
T ss_dssp             GGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEE
T ss_pred             ccHHHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEE
Confidence            4566666555788999998 55788887  8899998 7999999999999999977887776766655 5567999999


Q ss_pred             ecCCCCcccHHHHHHHHH
Q 025712          228 AKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       228 i~~~~~~~~~~~~~~~~~  245 (249)
                      +|+++  +++.+.+++.+
T Consensus        82 i~~~~--~~~~~~~~~~~   97 (187)
T d1vj1a2          82 VNYKT--GNVAEQLREAC   97 (187)
T ss_dssp             EETTS--SCHHHHHHHHC
T ss_pred             eeccc--hhHHHHHHHHh
Confidence            99987  78888888765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.2e-13  Score=90.12  Aligned_cols=71  Identities=11%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             CChhhhccccc-hHHHHHHH----HHcCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          153 VSLEEGAMCEP-LSVGVHAC----RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       153 ~~~~~aa~~~~-~~~a~~~l----~~~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +++++|+.++. ..|||.++    +....++++++||+| +|+||.+++|++|.+|+ +|+++.++++|.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            46788887774 55777665    335678999999997 79999999999999999 79999999999999999986

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.39  E-value=2.4e-13  Score=106.20  Aligned_cols=93  Identities=14%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             CChhhhcccc-chHHHHHHHH-HcCCCCCCeEEEE-c-CChHHHHHHHHHHHcCCCeEEEEeCC----hhHHHHHHHcCC
Q 025712          153 VSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIM-G-SGPIGLVTLLAARAFGAPRIIITDVD----VQRLSIARNLGA  224 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l~-~~~~~~g~~vlI~-G-~g~vG~~ai~la~~~G~~~vi~~~~~----~~~~~~~~~~ga  224 (249)
                      +++++||.++ ...|||+++. ..++++|++++|+ | +|++|++++|+||.+|+ ++|++.++    +++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            4788999888 5779999985 4789999999997 5 79999999999999999 67776544    345678899999


Q ss_pred             CEEecCCCC-cccHHHHHHHHHH
Q 025712          225 DETAKVSTD-IEMWGRYKMQWVQ  246 (249)
Q Consensus       225 ~~vi~~~~~-~~~~~~~~~~~~~  246 (249)
                      +++|+++.. ..++.+.++++++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~  102 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIK  102 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             cEEEeccccchhHHHHHHHHHHh
Confidence            999998652 3467777776654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.2e-13  Score=105.31  Aligned_cols=79  Identities=11%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             CChhhhcccc-chHHHHHHH---HHcC-CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          153 VSLEEGAMCE-PLSVGVHAC---RRAN-VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       153 ~~~~~aa~~~-~~~~a~~~l---~~~~-~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +++.+|+.++ +..|||+++   .... ..++++|||+| +|+||.+++|+||.+|+ +||++.++++|.++++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            4678888877 456888665   3334 44566999997 79999999999999999 7999999999999999999999


Q ss_pred             EecCCC
Q 025712          227 TAKVST  232 (249)
Q Consensus       227 vi~~~~  232 (249)
                      ++|+++
T Consensus        80 vi~~~~   85 (177)
T d1o89a2          80 VLPRDE   85 (177)
T ss_dssp             EEEGGG
T ss_pred             cccccc
Confidence            999875

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=1.6e-11  Score=93.73  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             HHHHH-cCCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          169 HACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       169 ~~l~~-~~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +++.. ....++++|||+| +|+||.+++|+||.+|+ +||++.++++|.++++++|++++++++
T Consensus        13 ~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~   76 (167)
T d1tt7a2          13 HRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRE   76 (167)
T ss_dssp             HHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEecc
Confidence            44433 5566788999998 79999999999999999 799999999999999999999999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.24  E-value=0.00019  Score=53.15  Aligned_cols=45  Identities=33%  Similarity=0.486  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      +.-+|+|+|+|.+|+.|+..|+.+|+ .|.+.|.+.++++.+++..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~   75 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLF   75 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhh
Confidence            56889999999999999999999999 8999999999999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.22  E-value=0.00034  Score=52.52  Aligned_cols=49  Identities=29%  Similarity=0.500  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      +.-+|+|+|+|.+|+.|+..|+.+|+ .|.+.|.+.++++.+++++...+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i   76 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI   76 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceE
Confidence            45789999999999999999999999 89999999999999999987554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.0016  Score=51.38  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE-ecCCCCcccHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v-i~~~~~~~~~~~~~~~~~  245 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+..++.+...+ .|..+ .+++.+.+.+..
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   71 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED-ERERVRFVEEAA   71 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC-HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHH
Confidence            689999998 79999999999999999 89999999999998888886543 33332 234444444433

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.0011  Score=49.14  Aligned_cols=52  Identities=15%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++.....++++|+|+|+|+.+.+++..++..|++.+.++.++.+|.+.+.+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~   59 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA   59 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence            4566677789999999999999999999999999889999999998877754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.0046  Score=48.37  Aligned_cols=65  Identities=26%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCEE-ecCCCCcccHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADET-AKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~v-i~~~~~~~~~~~~~~~~  244 (249)
                      +|+++||.| ++++|.+.++.....|+ +|+.+++++++.+.+.+ +++..+ .|..+ .+++.+.+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~   71 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEA   71 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHH
Confidence            589999998 78999999999999999 89999999988877754 565433 23332 33444444443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.0033  Score=44.22  Aligned_cols=48  Identities=10%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEe
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA  228 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi  228 (249)
                      ++++|.|.|.+|...++.+...|. .+++++.++++.+.+++.|...++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~   48 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI   48 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee
Confidence            467888999999999999999999 799999999999999888865444

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0035  Score=49.12  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+++++++++++.+.+....+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~   53 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQ   53 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCc
Confidence            689999998 79999999999999999 8999999998888876644333

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.38  E-value=0.0043  Score=47.19  Aligned_cols=49  Identities=27%  Similarity=0.390  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      -.|++|+|.|.|.||..+.+++...|+ ++++++.+.++.+...++|++.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~   73 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA   73 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc
Confidence            378999999999999999999999999 8999999999999998888754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0097  Score=46.44  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~  225 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++++.+. +++..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~   54 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGI   54 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCC
Confidence            689999998 79999999999999999 8999999998877664 45543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.015  Score=45.46  Aligned_cols=44  Identities=25%  Similarity=0.225  Sum_probs=39.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+.+++++++.+.+.+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~   49 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQE   49 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh
Confidence            689999998 79999999999999999 899999999988877653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.27  E-value=0.0054  Score=46.06  Aligned_cols=43  Identities=14%  Similarity=0.351  Sum_probs=38.1

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      =+|+++||+| +|++|....+.+...|+ +|+.++++.++.+.+.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHH
Confidence            4799999998 79999999999999999 8999999998876664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.24  E-value=0.012  Score=41.28  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD  225 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~  225 (249)
                      +|+|.|.|.+|...++.+...|. .+++++.++++.+.+.+ ++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~   46 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL   46 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh
Confidence            68899999999999999999999 89999999999988865 5644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.23  E-value=0.016  Score=45.55  Aligned_cols=48  Identities=23%  Similarity=0.349  Sum_probs=39.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~  226 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.+    ++.+...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~   57 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNV   57 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc
Confidence            689999998 79999999999999999 899999998776544    4455433

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.17  E-value=0.011  Score=46.99  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++++.+. ++|.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~   51 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGD   51 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC
Confidence            589999998 79999999999999999 8999999998876654 4653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.16  E-value=0.011  Score=43.07  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .+++|+|+|+|.+|...++.+...|. .|++++++.++.+.+.+-.
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcc
Confidence            36899999999999999998888999 7999999999999886633

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.014  Score=42.74  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=41.5

Q ss_pred             HHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          170 ACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++..+ ..+|++|||+|+|+.+.+++..+...|. .+..+.++.+|.+.+.+
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1           8 DLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAK   59 (170)
T ss_dssp             HHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHH
Confidence            454433 4578999999999999999999999999 68888899988776643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.012  Score=46.60  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      =+|+++||+| ++++|.+........|+ .|+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            3689999998 68999998888888999 8999999999887763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.009  Score=46.62  Aligned_cols=66  Identities=20%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCCC---EEecCCCCcccHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD---ETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga~---~vi~~~~~~~~~~~~~~~~~  245 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.+. +++..   ...|..+ .+++.+.+.+..
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhh
Confidence            588999998 78999999999999999 8999999998877664 35532   3344433 234444444433

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.022  Score=44.28  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~ga  224 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++++.+.+. +++.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~   51 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPG   51 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCC
Confidence            589999998 78999999999999999 8999999988876664 4543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.91  E-value=0.02  Score=44.97  Aligned_cols=42  Identities=29%  Similarity=0.411  Sum_probs=36.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +|+++||+| ++++|.+........|+ +|+.+++++++.+.+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   46 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAE   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            689999998 78999999999999999 8999999988876553

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.023  Score=44.28  Aligned_cols=41  Identities=20%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|+++||+| ++++|..........|+ +|+.+++++++++.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~   47 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   47 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            589999998 78999998888888999 899999999887655

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.82  E-value=0.019  Score=45.04  Aligned_cols=47  Identities=23%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~  225 (249)
                      +|+++||.| ++++|.+.++.....|+ +|+.+++++++.+.+ +++|..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~   52 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPA   52 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCc
Confidence            588999998 79999999999999999 899999998877655 557653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.82  E-value=0.022  Score=44.61  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCCE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~~  226 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+.+++++++.+.+ ++++...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~   54 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERS   54 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCe
Confidence            688999998 78999999999999999 899999998887765 4566543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.76  E-value=0.036  Score=42.88  Aligned_cols=47  Identities=23%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~  225 (249)
                      +|+++||+| ++++|.+.++-....|+ +|+.+.++.++.+.+ ++++..
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   52 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAE   52 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCc
Confidence            689999998 78999999999999999 899999998876655 456754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.72  E-value=0.027  Score=44.11  Aligned_cols=46  Identities=30%  Similarity=0.417  Sum_probs=38.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.+ +++|.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~   51 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGD   51 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGG
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC
Confidence            589999998 78999999988888999 799999988887665 45653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.70  E-value=0.012  Score=46.56  Aligned_cols=42  Identities=24%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +|+++||.| ++++|.+.++.....|+ +|+.+++++++.+.+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~   47 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVC   47 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            689999998 78999999999999999 8999999998877664

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.68  E-value=0.018  Score=44.85  Aligned_cols=45  Identities=18%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH-HcC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG  223 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~-~~g  223 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.+. +++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   51 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA   51 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh
Confidence            689999998 79999999999999999 8999999998877664 454

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.012  Score=43.75  Aligned_cols=49  Identities=10%  Similarity=0.091  Sum_probs=38.7

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +++..+. -.+++++|+|+|+.+.+++..+...|++.+..+.+++++.+.
T Consensus         8 ~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1           8 AIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK   57 (182)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred             HHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence            4444333 367999999999999999999999999888888887765543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.61  E-value=0.026  Score=44.51  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC-hhHHH----HHHHcCCCEEe-cCCC-CcccHHHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLS----IARNLGADETA-KVST-DIEMWGRYKMQWV  245 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~----~~~~~ga~~vi-~~~~-~~~~~~~~~~~~~  245 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+.++++ +++.+    .+++.|.+... ..+- +.+++.+.+.+..
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence            489999998 79999999999999999 78777655 44433    34556654322 2222 2334454444443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.61  E-value=0.022  Score=44.75  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++++.+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~   48 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNEC   48 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            589999998 79999999999999999 899999998886655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.015  Score=45.73  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+.+..+...|+ +|+.+++++++++.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   50 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 79999999998889999 899999999887765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.016  Score=45.31  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .|+++||+| ++++|.+..+.....|+ +|+.++++.++.+.+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~   44 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCK   44 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            589999998 79999999999999999 8999999988866553

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0081  Score=39.50  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|++|+|+|.|..|+++++++...|+ .|.+.|...
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            57899999999999999999999999 788887644

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.40  E-value=0.016  Score=45.38  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=30.6

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+........|+ +++++.+..++.+.+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~   45 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTAL   45 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHH
Confidence            589999998 78999998888888999 566664544444333

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.38  E-value=0.018  Score=45.84  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +|+++||.| ++++|.+.++.....|+ +|+.++++.++.+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKA   64 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            579999998 79999999999899999 89999999877544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.35  E-value=0.039  Score=43.25  Aligned_cols=37  Identities=16%  Similarity=0.164  Sum_probs=31.5

Q ss_pred             CCCeEEEEc-CC--hHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SG--PIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g--~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +|+++||.| +|  ++|.+.++.....|+ .|+.++++++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~   43 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESL   43 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            589999998 45  799999999999999 78888887643

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0084  Score=45.22  Aligned_cols=47  Identities=28%  Similarity=0.321  Sum_probs=36.9

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      .++|+|+| +|.+|...+..+...|. .|.++.++.+++......+++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~   50 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHV   50 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccc
Confidence            47899998 79999999998889999 7888888888765444444433

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.015  Score=45.14  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga  224 (249)
                      +|+++||+| ++++|.+.++-....|+ +|+.+++++++.+.+ ++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            689999998 79999999999999999 799998888776655 45654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.27  E-value=0.022  Score=44.74  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++++.+.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   48 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDC   48 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            689999998 78999999998889999 899999998887654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.25  E-value=0.023  Score=41.60  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~g  223 (249)
                      .+++.|+|+|.+|.+....+...|. .|...++++++.+.+++.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~   44 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRG   44 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcC
Confidence            3789999999999999999999999 8999999999999887755

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.21  E-value=0.016  Score=45.98  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++++.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   44 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   44 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            589999998 78999999999999999 899999998887655

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.20  E-value=0.024  Score=44.51  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+.+++++++.+.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~   44 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   44 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 78999999999999999 899999998887655

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.18  E-value=0.016  Score=45.80  Aligned_cols=42  Identities=33%  Similarity=0.415  Sum_probs=36.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~   46 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETR   46 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            578999998 79999999999999999 8999999988876653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.16  E-value=0.022  Score=46.25  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=37.5

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      -+.+|++|||+| +|-+|...+..+...|+ .|+++.++.++.+.++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            357899999998 79999999988888899 7888888887766654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.09  E-value=0.027  Score=43.98  Aligned_cols=40  Identities=13%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~   44 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASE   44 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            489999998 78999999999999999 89999998877543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.017  Score=45.37  Aligned_cols=46  Identities=20%  Similarity=0.387  Sum_probs=38.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga  224 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.+++++++.+.+    ++.|.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~   60 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG   60 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC
Confidence            689999998 78999999999999999 899999998776654    44554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.05  E-value=0.061  Score=41.71  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          175 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       175 ~~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..+|+.++||+| +|++|++.++.....|++.++.+.++
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            478999999998 79999998888888899667777655

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.03  E-value=0.081  Score=40.99  Aligned_cols=53  Identities=15%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH----HcCCCEEecCC
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVS  231 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~----~~ga~~vi~~~  231 (249)
                      +|+++||+|+ |  ++|.+..+.....|+ +|+.++++++..+.++    +.+-...+..+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D   66 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRAD   66 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccc
Confidence            5899999984 5  799998888888999 7888888776554443    33444444333

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.02  E-value=0.046  Score=42.84  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh-HH----HHHHHcCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RL----SIARNLGA  224 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~-~~----~~~~~~ga  224 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.++++.+ +.    +.+++.|.
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~   57 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG   57 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC
Confidence            588999998 79999999888888999 7888877643 33    33455664

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.028  Score=45.04  Aligned_cols=42  Identities=19%  Similarity=0.315  Sum_probs=36.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      =+|+++||+| ++++|.+.++.....|+ +|++++++.++.+.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4789999998 78999999999999999 899999998876544

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.026  Score=43.56  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=36.4

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      +|+++||+| ++++|.+..+.....|+ +|+.++++++++   ++.+...
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~   48 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRY   48 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcE
Confidence            589999998 79999999999999999 899999887654   4445433

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.96  E-value=0.059  Score=41.89  Aligned_cols=43  Identities=23%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +|+++||.| ++++|.+..+.....|+ +|+.+++++++.+.+.+
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            589999998 79999999999999999 79999999888776643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.92  E-value=0.054  Score=42.23  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=35.9

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHH----HHHHcCCC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLS----IARNLGAD  225 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~----~~~~~ga~  225 (249)
                      -.|+++||.| ++++|.+..+.....|+ +|+.+ .+++++.+    .+++.|.+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~   57 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQ   57 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            3689999997 79999999999999999 56654 55555544    34556654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.91  E-value=0.095  Score=40.53  Aligned_cols=47  Identities=28%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh--HHHHHHHcCCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~--~~~~~~~~ga~  225 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.++++++  ..+.+++.|..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~   53 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRR   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCc
Confidence            578999998 78999999999999999 7888887643  34455667753

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.91  E-value=0.022  Score=44.77  Aligned_cols=41  Identities=32%  Similarity=0.377  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +|+.+||+| ++++|.+.++.....|+ +|+.+++++++++.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   45 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEET   45 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            588899998 79999999999999999 899999998887655

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.87  E-value=0.038  Score=39.94  Aligned_cols=43  Identities=19%  Similarity=0.099  Sum_probs=38.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|.|+|+|.+|.......+..|. .|++.++++++.+.+++.|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~   44 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL   44 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc
Confidence            58889999999988888888999 89999999999999988874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.73  E-value=0.09  Score=37.91  Aligned_cols=51  Identities=20%  Similarity=0.394  Sum_probs=41.7

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHH-HHHHcCC
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA  224 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~-~~~~~ga  224 (249)
                      ..--.++++||+|+|.+|.+.++.....|++.+.++.++.+|.+ +++++|.
T Consensus        19 ~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~   70 (159)
T d1gpja2          19 LGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG   70 (159)
T ss_dssp             HSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC
T ss_pred             hCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc
Confidence            33457899999999999999999999999988888988887765 5556663

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.69  E-value=0.031  Score=41.02  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ..++++++|+|+|+.+.+++..+...+ .++..+.++.++.+.+.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            347899999999999999988877655 488899999988776643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.58  E-value=0.03  Score=43.67  Aligned_cols=41  Identities=10%  Similarity=0.038  Sum_probs=35.1

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      +++.+||+| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~   50 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   50 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            578889998 78999999888888999 899999998876654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.54  E-value=0.046  Score=42.65  Aligned_cols=41  Identities=17%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|+.+||+| ++++|.+.++.....|+ +|+.+++++++.+.+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~   42 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTT   42 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            367889998 78999999998889999 799999998776654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.50  E-value=0.025  Score=44.37  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~  218 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.+++++++.+.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~   48 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVE   48 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            478999998 78999999999999999 79999888766543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.29  E-value=0.059  Score=41.49  Aligned_cols=49  Identities=27%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCCE
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE  226 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~~  226 (249)
                      -.|++|+|.|.|.||..+++++...|+ ++++++.+..+.+.+.. .|+..
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~~   86 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADA   86 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCcc
Confidence            479999999999999999999999999 89999988888776654 56543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.095  Score=40.46  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=33.9

Q ss_pred             CCCCeEEEEc-CC--hHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          177 GPETNVMIMG-SG--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       177 ~~g~~vlI~G-~g--~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      =+|+++||+| +|  ++|.+........|+ +|+.++++++..+.++
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~   48 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVE   48 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            3689999997 56  688988888889999 7888888766555443

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.21  E-value=0.081  Score=40.88  Aligned_cols=45  Identities=22%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHHHcC
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLG  223 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~~~g  223 (249)
                      .++|||+| ++++|.+.++.....|+. .|+.+.++.++.+.+++..
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~   49 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK   49 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh
Confidence            47899998 799999988877778863 6888889999988887754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.16  E-value=0.06  Score=40.99  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH----HHcCCCEEe
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETA  228 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~----~~~ga~~vi  228 (249)
                      .+++..++++|++||.+|+|. |+.++-+++..|. .|++++..++-.+.+    +++|.+.+.
T Consensus        69 ~ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~  130 (215)
T d1jg1a_          69 IMLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVH  130 (215)
T ss_dssp             HHHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred             HHHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeE
Confidence            356778999999999998776 7788888888885 799999887665555    456766543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.06  E-value=0.049  Score=43.37  Aligned_cols=49  Identities=10%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +++.++++|++||=+|.|- |..++.+|+..|+ .|.+++.+++..+++++
T Consensus        55 ~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          55 LGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            4678999999999998765 6788899999999 89999999998888755

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.96  E-value=0.012  Score=45.68  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      .|+++||+| ++++|.+.++.....|+ +|+.+++++++.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~   44 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAP   44 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchh
Confidence            689999998 78999999999999999 899888776553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.053  Score=36.75  Aligned_cols=38  Identities=29%  Similarity=0.563  Sum_probs=31.6

Q ss_pred             CCCC-CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          176 VGPE-TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       176 ~~~g-~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      +.++ .+|.|+|+|.+|.+.++-|+.+|+ ++++.+.+++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3444 569999999999999999999999 7888876543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.90  E-value=0.046  Score=40.02  Aligned_cols=49  Identities=12%  Similarity=0.056  Sum_probs=40.9

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +....+.+|.+||..|.|. |..++.+|+ .|+ .|.++|-+++-++.+++.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHHH
Confidence            3456789999999998765 678888887 499 899999999999999863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.80  E-value=0.17  Score=40.39  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC---------hhHHH----HHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD---------VQRLS----IARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~---------~~~~~----~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +|+++||+| ++++|.+..+.....|+ +|++++.+         .++.+    .+...+.....|..+ .++..+.+.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~   83 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLVKT   83 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHHHH
Confidence            588999998 68999999999999999 78887543         22222    223445555555554 2444444444


Q ss_pred             HH
Q 025712          244 WV  245 (249)
Q Consensus       244 ~~  245 (249)
                      ..
T Consensus        84 ~~   85 (302)
T d1gz6a_          84 AL   85 (302)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.78  E-value=0.014  Score=45.72  Aligned_cols=41  Identities=10%  Similarity=0.100  Sum_probs=34.7

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +.||+| ++++|++........|+ +|+.++++.++.+.+++.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~   43 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAF   43 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhh
Confidence            678998 68999999888888999 899998888888777654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.73  E-value=0.15  Score=34.22  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .|++|||.|+|.+|..-++.+...|+ .+++++.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            57999999999999999999999999 6666643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.65  E-value=0.11  Score=37.46  Aligned_cols=45  Identities=31%  Similarity=0.377  Sum_probs=39.0

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ++|+|+|.|.+|...+...+..|. .+|++.+.+++..+.+++.|.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~   47 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   47 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc
Confidence            368999999999998888888885 378999999999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.58  E-value=0.071  Score=40.90  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      +|+++||.| ++++|.+.++.....|+ +|+.++..++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            589999998 79999999999999999 7888866543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.57  E-value=0.13  Score=38.88  Aligned_cols=51  Identities=16%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      +++..++++|++||-+|+|. |..++.+++..|. ..|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            56778999999999999776 8888889988763 379999999988777754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.55  E-value=0.065  Score=39.25  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      --+++++||+|+|+++.+++..+...  ..+.+..++.+|.+.+
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~--~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKD--NNIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSS--SEEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHccc--cceeeehhhhhHHHHH
Confidence            35789999999999999887766444  4788888898887665

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.53  E-value=0.042  Score=40.34  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +++|+|+|+|..|+.++..+...|++.|.+.+.++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            68999999999999999999999995576676554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.42  E-value=0.15  Score=35.18  Aligned_cols=63  Identities=16%  Similarity=0.293  Sum_probs=50.5

Q ss_pred             HHHHHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          169 HACRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ..+..++++.-+.+++. ..-..-..+.++++.+|..++++...+++..+.++++|++.+++..
T Consensus        56 ~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          56 KTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            34567777777776664 4456677888999999998899988899999999999999998543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.1  Score=38.74  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ++|.|+|+|..|....+++...|+ .|+..+.+++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            589999999999999999999999 899999998776654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.037  Score=35.05  Aligned_cols=34  Identities=21%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      ++|.|+|+|-+|.+.++-++.+|+ ++++.+.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            578999999999999999999999 7888876543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.069  Score=41.92  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             CCCeE-EEEc-CChHHHHHHH-HHHHcCCCeEEEEeCChhHHHHH
Q 025712          178 PETNV-MIMG-SGPIGLVTLL-AARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       178 ~g~~v-lI~G-~g~vG~~ai~-la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .|++| ||+| ++++|++..+ |++.-|+ +|+.+.+++++.+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~   44 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAA   44 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH
Confidence            36788 5667 7899988654 6666688 899999998887654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.10  E-value=0.077  Score=41.37  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC-hhHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLSI  218 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~-~~~~~~  218 (249)
                      +|+++||+| ++++|.+.++.....|+ +|+.++++ +++.+.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~   44 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEK   44 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHH
Confidence            688999997 78999999988889999 78888875 344443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.97  E-value=0.35  Score=37.22  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      .+||+| ++++|.+........|+ +|+.+++++++.+.+
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   41 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAV   41 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            358888 78999998888888999 899999998887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.73  E-value=0.066  Score=41.31  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +++|+|+|+|..|+.+...++..|. +|.+++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            5899999999999999888888999 78888754

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=92.70  E-value=0.46  Score=37.23  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCC
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +.....++.+|+...+|..|+++...|+.+|.+.+|.+.  .++.|.+.++.+|++.++...
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~  114 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK  114 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECT
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeec
Confidence            444556666666557899999999999999996666663  377889999999998665433

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.69  E-value=0.53  Score=38.72  Aligned_cols=59  Identities=19%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCC
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      .+.+++.+|+-..+|..|.+....|+.+|.+.++.+..  +++|.+.++.+||+.++....
T Consensus       139 ~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~  199 (382)
T d1wkva1         139 RRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA  199 (382)
T ss_dssp             TTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC
T ss_pred             hccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcc
Confidence            35677776544458999999999999999966666643  668899999999988765443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.47  E-value=0.15  Score=39.36  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      -.|.+|+|.|.|.||..+.+++...|+ ++++++.
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            479999999999999999999999999 7887754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.24  Score=35.74  Aligned_cols=44  Identities=32%  Similarity=0.403  Sum_probs=37.9

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      ..-.|++++|.|.|-+|....+.++.+|+ +|++++..+-+.-.+
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A   63 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQA   63 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHh
Confidence            35589999999999999999999999999 899999887554443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.46  E-value=0.14  Score=37.03  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             eEEEE-cCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          181 NVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       181 ~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +|.|+ |+|++|.+..+.....|+ +|+..++++++.+.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            57788 689999999999999999 78888899988776643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.21  Score=35.24  Aligned_cols=32  Identities=19%  Similarity=0.567  Sum_probs=28.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      .|+++||.|+|.+|..-+..+...|+ .|.+++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            68999999999999999999999999 666663

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.38  E-value=0.17  Score=38.80  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHH---HcCCCeEEEEeCChhHHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAAR---AFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~---~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++|||+| ++++|++.++...   ..|+ +|+++.+++++.+.+++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~   47 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELED   47 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            5799998 6899998775443   3578 89999899887766654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.33  E-value=0.25  Score=33.30  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++.....++++++|.|+|.+|.-....++..|. .+..+...+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            3455677889999999999999999999999998 677776543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.30  E-value=0.19  Score=37.30  Aligned_cols=41  Identities=15%  Similarity=0.047  Sum_probs=32.3

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCC-eEEEEeCChhHHHHHH
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIAR  220 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~-~vi~~~~~~~~~~~~~  220 (249)
                      .+|||+| +|.+|...+..+...|.+ .++.+.+++++.+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~   46 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG   46 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc
Confidence            6899998 799999999999888863 4666777777765543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.26  E-value=0.094  Score=40.11  Aligned_cols=34  Identities=18%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..++|+|+|+|..|+++...+...|. +|++++.+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            46889999999999998888888999 88898754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.16  E-value=0.27  Score=37.40  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      +++..++++|++||-+|+|. |..+..+++.. . +|++++.+++-.+.+++.
T Consensus        62 ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l~-~-~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhhcccceEEEecCCC-CHHHHHHHHHh-c-ccccccccHHHHHHHHHH
Confidence            56778999999999998764 67777788864 4 799999999998888764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.26  Score=37.41  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=39.4

Q ss_pred             HHHHHc--CCCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHHHHH
Q 025712          169 HACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIAR  220 (249)
Q Consensus       169 ~~l~~~--~~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~~~~  220 (249)
                      .+++..  .+++|++||-+|+|. |+.+..+++..| ..+|++++.+++-.+.++
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            345543  789999999999776 778888888866 338999999987777664

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.09  E-value=0.33  Score=37.32  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             CCCCCeEEEEc-CC--hHHHHHHHHHHHcCCCeEEEEeCChhHH-HHH-HHcC
Q 025712          176 VGPETNVMIMG-SG--PIGLVTLLAARAFGAPRIIITDVDVQRL-SIA-RNLG  223 (249)
Q Consensus       176 ~~~g~~vlI~G-~g--~vG~~ai~la~~~G~~~vi~~~~~~~~~-~~~-~~~g  223 (249)
                      +=+|+++||.| +|  ++|.+..+-+...|+ +|+.+.++.++. +.+ ++++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~   54 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLP   54 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcC
Confidence            34789999998 33  699999988899999 788887776664 333 4455

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.02  E-value=0.15  Score=40.18  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++..++++|++||=+|.|. |..+..+++..|+ .|++++.+++..+++++
T Consensus        45 ~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHH
Confidence            4668899999999998654 3456778999999 89999999999888765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.13  Score=37.88  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .....++|+|+|+|..|+.|...+..+|. .|...+..+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            34667999999999999999999999999 788887653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.62  E-value=0.18  Score=39.14  Aligned_cols=51  Identities=18%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      .+...+++||++||=.|+|+ |.++..+|+..|. ..+++++.+++..+.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            34678999999999988765 6777788887653 389999999998888865

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.62  E-value=0.14  Score=38.26  Aligned_cols=36  Identities=31%  Similarity=0.500  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|++|.|+|.|.+|....++++.+|+ +|++.+....
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            58999999999999999999999999 8999976543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.51  E-value=0.19  Score=35.87  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .++..+|.|+|+|.+|.....++...+...++.+|.++++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~   43 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM   43 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecccc
Confidence            3567899999999999988888888887789999877655

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.39  Score=38.98  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=45.9

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+++++.|+...+|..|.+....|+.+|++.++.+.  .+++|.+.++.+|++.+..
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v  149 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT  149 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEEC
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEe
Confidence            445567777766667899999999999999996666663  3678999999999987664

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.41  E-value=0.61  Score=32.36  Aligned_cols=61  Identities=13%  Similarity=0.062  Sum_probs=41.5

Q ss_pred             eEEEEc-CChHHHHHHHHHHH-cCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~-~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +|.|.| +|-.|...++.... .++ .+++.-...+.......-+++.+|||+.. +...+.+..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~~~~~~DvvIDFS~p-~~~~~~~~~   63 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTHP-DVVMGNLEF   63 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHHHTTTCSEEEECCCT-TTHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhhccccCCEEEEcccH-HHHHHHHHH
Confidence            578899 69999998887665 566 44444334455566666789999999982 344444443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.27  E-value=0.13  Score=39.85  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             CCCeEEEEc-CChHHHHHH-HHHHH--cCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMG-SGPIGLVTL-LAARA--FGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai-~la~~--~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .|+.++|.| ++++|.+.. +||+.  .|+ +|+.+++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            467778888 689998755 56663  688 8999999998877663

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.04  E-value=0.12  Score=38.66  Aligned_cols=35  Identities=34%  Similarity=0.537  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|+++.|+|.|.+|....++++.+|+ +|++.+...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            47899999999999999999999999 899997643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.01  E-value=0.13  Score=41.27  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .+++|||+| +|-+|...++.+...|. .|+++++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            579999998 79999999999999999 7999987554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=91.00  E-value=0.39  Score=37.45  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             HHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          168 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       168 ~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      .+.+...+++||++||=.|+|. |.+++.+|+..|. .++++++.+++..+.+++
T Consensus        93 ~~Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          93 SFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            3356788999999999988766 7778888988752 389999999998888754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.99  E-value=0.46  Score=30.89  Aligned_cols=53  Identities=15%  Similarity=0.070  Sum_probs=40.7

Q ss_pred             CCCCCeEEEEcCChHHHHH-HHHHHHcCCCeEEEEeCC-hhHHHHHHHcCCCEEec
Q 025712          176 VGPETNVMIMGSGPIGLVT-LLAARAFGAPRIIITDVD-VQRLSIARNLGADETAK  229 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~-~~~~~~~~~~ga~~vi~  229 (249)
                      .+..+++.++|-|+.|..+ +++++..|+ .|-+.|.. ....+.+++.|+.....
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g   59 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIG   59 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEES
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEEC
Confidence            4567889999988888766 799999999 89999875 34556677788865443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.95  E-value=0.12  Score=39.19  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .+++||+| ++++|.+.++.....|+ +|+.+++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            36788998 79999999999999999 89999877654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.91  E-value=0.17  Score=37.24  Aligned_cols=40  Identities=15%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      =++|.|+|+|.+|...+.++...|+ .|+..+.+++.++..
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            3679999999999988888888899 799999988776554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.79  E-value=0.22  Score=37.00  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +|.|+|+|-+|+...-.....|. .|++.|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            57889999999887777777898 89999999998887764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.64  E-value=0.31  Score=38.61  Aligned_cols=49  Identities=16%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .++++++++|++||=+|.|- |..++.+|+..|+ .+++++.+++..++++
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~  101 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHH
Confidence            34778999999999888653 4567889999999 8999999998866654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.51  E-value=0.19  Score=39.95  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .|++|+|.|.|.||..+++++...|+ +++++..
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            68999999999999999999999999 7888753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.41  E-value=0.22  Score=38.71  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=32.8

Q ss_pred             HHHHcCC-CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          170 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       170 ~l~~~~~-~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +++..+. -.|++++|.|.|.||..+.+++...|+ +++++..
T Consensus        26 ~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          26 VMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             HHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             HHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            3444332 368999999999999999999999999 7777743

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.19  E-value=0.7  Score=36.53  Aligned_cols=58  Identities=16%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +...+.++++|+...+|.-|+++...|+..|.+.+|.+..  +..|.+.++.+|+..+..
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~  113 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLT  113 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEec
Confidence            3445677777666678999999999999999977777744  668889999999988764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.13  E-value=0.14  Score=39.04  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      +.+|||+| ++++|.+.++.....|+ +|+.++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            45789998 79999999999999999 7999887654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.08  E-value=0.23  Score=36.42  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|+++.|+|.|.+|....++++.+|+ +|++.++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            58899999999999999999999999 899997654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.07  E-value=0.42  Score=36.99  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=27.7

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +-++|||+| +|.+|...+..+...|. .|+++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            346799998 79999999998888998 67777654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.98  E-value=0.2  Score=39.09  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .....++|+|+|+|..|+.+...+...|. +|.+++.+
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            34566899999999999998888888899 78888754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.93  E-value=0.88  Score=31.66  Aligned_cols=52  Identities=23%  Similarity=0.176  Sum_probs=42.1

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  232 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~  232 (249)
                      ++|.|+| .|.+|.......+..|+ .|.+.+.+.+........+++.++....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~   62 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP   62 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc
Confidence            6899998 89999999999999999 7888988877766666667777765443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.87  E-value=0.23  Score=37.53  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .+.+++|+|+|+|..|+.+...++..|+ .+..++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            4578999999999999999999999999 788886544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.84  E-value=0.21  Score=37.13  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|+++.|+|.|.+|....+.++.+|+ +|++.+...
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            68899999999999999999999999 888887643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.80  E-value=0.71  Score=32.31  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH-cCCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD  225 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~-~ga~  225 (249)
                      +|.++|+|..|.+.++-....|...+++.++++++.+.+.+ +|+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~   47 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE   47 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc
Confidence            57888999999987774434453489999999999888765 6653

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.71  E-value=0.66  Score=37.13  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             HHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC---ChhHHHHHHHcCCCEEecCCCCcccHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEMWGRYKMQ  243 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~---~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~  243 (249)
                      +++++..+.....++++...+|.-|.++..+|+..|...+|.+..   +.++...++.+|++.+.. ....++..+..++
T Consensus        65 a~~~i~~a~~~g~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~-~~~~~~~~~~a~~  143 (351)
T d1v7ca_          65 MTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQV-EGNFDDALRLTQK  143 (351)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEE-ESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEee-ccccchhhhhHHH
Confidence            344443332233456555568999999999999999965666643   235666688899977653 3333455555555


Q ss_pred             HHH
Q 025712          244 WVQ  246 (249)
Q Consensus       244 ~~~  246 (249)
                      +.+
T Consensus       144 l~~  146 (351)
T d1v7ca_         144 LTE  146 (351)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.67  E-value=0.9  Score=30.61  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             HcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          173 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       173 ~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ...-..+++++|.|+|.+|.-+++.+..+|. .|..+...
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~   62 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDIL   62 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEec
Confidence            3444567899999999999999999999999 66666543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.59  E-value=0.19  Score=38.66  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh------hH-HHHHHHcCCCEEecCCC
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV------QR-LSIARNLGADETAKVST  232 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~------~~-~~~~~~~ga~~vi~~~~  232 (249)
                      +|||+| +|-+|...+..++..|. .|+++++.+      +. .+.+++...+.+++.-.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhccCCCHHHHHHHHHHcCCCEEEeecc
Confidence            689998 69999999999999999 899997653      11 34555667888887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.56  E-value=0.92  Score=34.47  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=28.7

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +.||+| ++++|.+........|+ +|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            567888 68999999999999999 88888877554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.56  E-value=0.45  Score=33.81  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      +|-|+|.|.+|...+.-....|+ .|++.++++++.+.+++.++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh
Confidence            57788999999988877777899 899999999999999887764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.28  E-value=0.34  Score=35.56  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +|.|+|.|-+|+....++ +.|. .|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            578889999998866444 5799 89999999999888864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=1.2  Score=28.44  Aligned_cols=48  Identities=21%  Similarity=0.347  Sum_probs=37.2

Q ss_pred             CeEEEEcCChHHHHH-HHHHHHcCCCeEEEEeCCh-hHHHHHHHcCCCEEe
Q 025712          180 TNVMIMGSGPIGLVT-LLAARAFGAPRIIITDVDV-QRLSIARNLGADETA  228 (249)
Q Consensus       180 ~~vlI~G~g~vG~~a-i~la~~~G~~~vi~~~~~~-~~~~~~~~~ga~~vi  228 (249)
                      .++-++|-|+.|..+ +++++..|+ .|-+.|..+ +..+.|+++|+....
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~   51 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFV   51 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEES
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEe
Confidence            356677988888754 688999999 899998766 566778899986543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.06  E-value=0.23  Score=37.92  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=27.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +.+||+| ++++|.+..+.....|+ +|+.+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            4568888 79999999999999999 788887654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.04  E-value=0.44  Score=33.71  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      |..+|.|.|+|.+|.....++...+...++.+|.++++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            45789999999999988888888898899999877655

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.01  E-value=0.35  Score=36.22  Aligned_cols=49  Identities=12%  Similarity=0.168  Sum_probs=39.4

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++||++||=+|+|. |..+..+++..+..+|++++.+++.++.+++
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~   98 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   98 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHH
Confidence            346789999999888665 6677788888876689999999988877643

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.90  E-value=1.1  Score=35.58  Aligned_cols=58  Identities=24%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             HHcCCCCCCeEEEE-cCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          172 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       172 ~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +...++++...+|. .+|..|.+....|+.+|.+.++.+.  .++.|.+.++.+|++.++.
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~  117 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLT  117 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEe
Confidence            44556666666665 5899999999999999996666663  3678999999999987654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.85  E-value=0.77  Score=31.16  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             HHHcCCCCCCeEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          171 CRRANVGPETNVMIM-GS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       171 l~~~~~~~g~~vlI~-G~-g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      +..+++..-+.+++. +. -..-..+...++..+...+++...+.+..+.++++|++++|+..
T Consensus        57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~  119 (134)
T d2hmva1          57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE  119 (134)
T ss_dssp             HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred             hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence            445566666666664 43 35556677777888887888888899999999999999998543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.82  E-value=0.45  Score=34.84  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      -.++++.|+|.|.+|....++++.+|. +|++.++...+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            367899999999999999999999999 89999865544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.80  E-value=0.38  Score=36.05  Aligned_cols=36  Identities=31%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .+.-++|+|+|+|..|+++...+...|. .|.+++..
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            3556789999999999998888888999 78888753

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.80  E-value=0.45  Score=36.00  Aligned_cols=51  Identities=18%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             HHHHc--CCCCCCeEEEEcC--ChHHHHHHHHHHHcCC---CeEEEEeCChhHHHHHH
Q 025712          170 ACRRA--NVGPETNVMIMGS--GPIGLVTLLAARAFGA---PRIIITDVDVQRLSIAR  220 (249)
Q Consensus       170 ~l~~~--~~~~g~~vlI~G~--g~vG~~ai~la~~~G~---~~vi~~~~~~~~~~~~~  220 (249)
                      +++..  .+++|++||.+|+  |-......+++...|.   .+|++++..++-.+.++
T Consensus        70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~  127 (223)
T d1r18a_          70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK  127 (223)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHH
Confidence            44443  7899999999975  4444445555555553   26999998887766654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.77  E-value=0.45  Score=36.35  Aligned_cols=34  Identities=18%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHH-HHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAA-RAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la-~~~G~~~vi~~~~  211 (249)
                      -.+.+++|.|.|.||..+.+.+ +..|+ ++++++.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd   63 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD   63 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence            4689999999999999988876 67899 7877753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.63  Score=37.26  Aligned_cols=51  Identities=18%  Similarity=0.105  Sum_probs=42.6

Q ss_pred             HHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          169 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       169 ~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ..++..++++++++|=+|+|. |..++++|+..++..+++++-+++..+.++
T Consensus       142 ~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         142 QMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            456788999999988888765 888899999999878999999988777664

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=1.1  Score=35.29  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=45.0

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHH
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQW  244 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~  244 (249)
                      |..-+|.. +|..|.+....|+.+|.+.+|.+..  +++|.+.++.+|+..++. ..+..+..+..+++
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~~-~~~~~~~~~~~~~~  120 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV-GELLDEAFELAKAL  120 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEEC-CSCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceeccccc-cccchhHHHHHHHH
Confidence            33445566 7999999999999999976776643  568899999999877653 33223334444443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.95  Score=31.55  Aligned_cols=36  Identities=11%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      -++++|.|.|.+|...++.....|. .+++++.++++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~   38 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPED   38 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchh
Confidence            3568889999999999999999998 67777766543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.52  E-value=0.48  Score=32.04  Aligned_cols=37  Identities=27%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      ++++++++|.|+|.+|.-.+..++..|. .|..+..++
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            4678999999999999999999999999 677775543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=88.30  E-value=0.43  Score=35.24  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      .|+++.|+|.|.+|....++++.+|. +++..+....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            37999999999999999999999999 7888876543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.25  E-value=0.33  Score=37.94  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=29.9

Q ss_pred             CCCeEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEeCChh
Q 025712          178 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQ  214 (249)
Q Consensus       178 ~g~~vlI~G~-g--~vG~~ai~la~~~G~~~vi~~~~~~~  214 (249)
                      +|+++||.|+ |  ++|.+..+.+...|+ +|+.+.+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            6899999984 4  899999999999999 7887766543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.23  E-value=0.59  Score=31.37  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++..++++|.|+|.+|.-.++....+|. .|..+.+.
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   54 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARG   54 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehh
Confidence            45567899999999999999999999999 67777653

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.05  E-value=0.65  Score=35.52  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=28.5

Q ss_pred             CCCCeEEEEcCChHHHHHHHHH-HHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAA-RAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la-~~~G~~~vi~~~~~  212 (249)
                      -+|.+|+|.|.|.||..+.+++ +..|+ +++++..+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecccc
Confidence            4789999999999999999866 56798 77777543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.90  E-value=0.81  Score=32.78  Aligned_cols=44  Identities=27%  Similarity=0.309  Sum_probs=37.7

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  219 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~  219 (249)
                      -.-.|++++|.|-|-+|.-..+-++.+|+ +|++++.++-+.-.+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQA   62 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHH
Confidence            35689999999999999999999999999 899998888553333

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=87.88  E-value=1.1  Score=31.63  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhH---HHHHHHcCCCEEecCCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQR---LSIARNLGADETAKVST  232 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~---~~~~~~~ga~~vi~~~~  232 (249)
                      ++|.|+| +|++|.-++++.+..  .+ +++++..+.+-   .+.+++|....++..+.
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~   60 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP   60 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH
Confidence            7899999 799999999999885  57 67777655443   34457789998876553

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.82  E-value=0.72  Score=36.97  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=42.2

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      .+...+++||++||=.|+|+ |.+++.+|+..|. .+|++++.+++..+.+++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            45778999999999888766 8888899998864 379999999988888754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.80  E-value=0.53  Score=36.00  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=28.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -++|||+| +|.+|...+..+...|. .|++++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence            37899998 69999999999999999 678776643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.76  E-value=0.34  Score=36.85  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=27.0

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .|+|+|+|..|+++..+++..|...|.+++.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            68999999999999999999997567777654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.73  E-value=1.1  Score=34.86  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=25.6

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEe
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      +|||+| +|-+|...+..+...|. .|++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            799998 79999999998888899 788885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.66  E-value=0.37  Score=38.38  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +.++|+|+|+|..|+.++..+...|. .|.+++.++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            35889999999999998888888898 788887554

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.39  Score=37.19  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=28.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      ++..+|+|+|+|..|+.|...+...|. +|.+++.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            456789999999999999998899999 7777753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.56  E-value=0.84  Score=37.75  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=44.1

Q ss_pred             HHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          167 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       167 a~~~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...+++..++++|+++|=+|+|. |..++++|+..|...+++++-++.-.+.+++
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            44567888999999977667654 8999999999998789999999887777653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.46  E-value=0.76  Score=32.55  Aligned_cols=46  Identities=15%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCE
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  226 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~  226 (249)
                      ++|.++|.|..|...+.-....|+ .|.+.++++++.+.+.+.++..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~   47 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASA   47 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhccc
Confidence            368889999999877776677899 8999999999999988877643

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.44  E-value=0.52  Score=37.31  Aligned_cols=64  Identities=14%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHHH
Q 025712          182 VMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEMWGRYKMQWVQ  246 (249)
Q Consensus       182 vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~  246 (249)
                      .+|.+ +|..|.+....|+..|.+.++.+..  ++++.+.++.+|++.+.. ....++.....++..+
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~-~~~~~~~~~~a~~~a~  137 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMY-DRYKDDREKMAKEISE  137 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEE-CTTTTCHHHHHHHHHH
T ss_pred             eeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEec-cCCchHHHHHHHHHHH
Confidence            35554 7999999999999999977777743  678899999999987664 3333455555555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.40  E-value=0.46  Score=34.84  Aligned_cols=42  Identities=24%  Similarity=0.293  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      .+.++.|+|.|.+|....+.++.+|. .|+..++........+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~   84 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEK   84 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHH
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeeccccccccc
Confidence            58899999999999999999999999 8999986543333333

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.99  Score=34.04  Aligned_cols=48  Identities=25%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ...+++||++||=+|+|. |..+..+++..|+ ++++++.++.-++.+++
T Consensus        27 ~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          27 RVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            668999999998777554 5667788888898 89999999988777655

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.33  E-value=2.9  Score=32.38  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +++....+++.+++..++|..|.+....|+.+|.+.++.+.  .++.+...++.+|++.+..
T Consensus        52 a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~  113 (302)
T d1fcja_          52 AEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLT  113 (302)
T ss_dssp             HHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HHHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEe
Confidence            34455667777766667899999999999999997666664  3668888999999987643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.33  E-value=0.58  Score=31.18  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +..++++|.|+|.+|.-+.+....+|. .|..+.+.+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence            345889999999999999999999999 566665443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.29  E-value=0.48  Score=33.42  Aligned_cols=36  Identities=11%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCC-eEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~-~vi~~~~~~  213 (249)
                      .|++|+|.|+|..|..++..++..+.+ +|..++..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            489999999999999988888887743 566665443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.19  E-value=0.82  Score=31.30  Aligned_cols=55  Identities=18%  Similarity=0.065  Sum_probs=38.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCCCCcccHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEMWGRYK  241 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~  241 (249)
                      +|.|+| +|-.|++..++++..+...+..++.+...  .+  -.+|.+|||+.  ++.....
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~--~~--~~~DVvIDFS~--p~~~~~~   57 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE--EL--DSPDVVIDFSS--PEALPKT   57 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE--EC--SCCSEEEECSC--GGGHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH--Hh--ccCCEEEEecC--HHHHHHH
Confidence            588999 69999999999999998545555543221  11  25799999998  5443333

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.15  E-value=0.32  Score=36.16  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=26.7

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +|+|+|+|..|+.+...+...|...|.+++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            58999999999998888888897558888754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=87.10  E-value=0.55  Score=35.27  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=37.0

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  220 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~  220 (249)
                      ++.+.+++|++||=+|+|. |..+..+++. +. .++++|-+++-++.++
T Consensus         9 ~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~   55 (234)
T d1xxla_           9 IKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVAS   55 (234)
T ss_dssp             HHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhh
Confidence            4678999999998888665 6777777774 56 8999999988776654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.78  E-value=1.1  Score=34.83  Aligned_cols=51  Identities=25%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             HHHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHH
Q 025712          170 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN  221 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~  221 (249)
                      .+...+++||++||=.|+|+ |.+++.+|+..|- .+++.++.+++..+.+++
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            45778999999999887665 7888899998763 389999999998888864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=86.68  E-value=0.49  Score=36.07  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCC------eEEEEeCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAP------RIIITDVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~------~vi~~~~~~~~~~~~  219 (249)
                      .+||+| ++++|.+........|++      .++.+++++++++.+
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~   48 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKI   48 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHH
Confidence            367888 689999988888888884      388888898887655

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.4  Score=36.13  Aligned_cols=45  Identities=9%  Similarity=-0.019  Sum_probs=37.6

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++.+||..|.|. |..+..+++ .|+ .|+++|.+++-++.+++
T Consensus        41 l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            4678999999998765 777888876 699 89999999999888765

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.45  E-value=0.83  Score=32.05  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhH
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQR  215 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~  215 (249)
                      ..+.+|.|+|+|.+|......+...+ +++++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            45789999999999998888777766 4579999988877

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.27  E-value=0.82  Score=31.33  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++++++|.|+|.+|.-++..++..|. .|-.+...
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            35678999999999999999999999999 67777554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=86.26  E-value=0.56  Score=34.45  Aligned_cols=42  Identities=10%  Similarity=0.260  Sum_probs=35.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      .+|.|+|+|..|.+...++...|. .|....++++..+.+.+-
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~   49 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEK   49 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhc
Confidence            468999999999998888877787 788888999888887653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.24  E-value=0.98  Score=35.88  Aligned_cols=37  Identities=16%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +.++|+|+| +|.+|...+..+...|. .|+++.++.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcch
Confidence            468999998 79999999999999999 57777665443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.00  E-value=0.46  Score=38.64  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=27.4

Q ss_pred             CCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe
Q 025712          179 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       179 g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      |++|||+| +|-+|...+..+...|. .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            68999998 79999999999999999 899986

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.00  E-value=0.33  Score=37.54  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=28.1

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|+|.|+|.+|+++...++..|. .|.+++..+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            58999999999999999999999 788887654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=85.86  E-value=0.81  Score=32.08  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQR  215 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~  215 (249)
                      ++|.|+|+|.+|..+...+...| +++++.+|.++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            68889999999988887777666 5578999988876

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.84  E-value=0.55  Score=36.79  Aligned_cols=44  Identities=18%  Similarity=0.114  Sum_probs=32.8

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh--hHHHHHHHcCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~--~~~~~~~~~ga  224 (249)
                      ++|||+| +|-+|...+..+...|+ .|+++++..  .+.+.+++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            5899998 79999999998888899 788887643  23344555443

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=85.76  E-value=2.6  Score=32.83  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=45.1

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEecCCCCcccHHHHHHHHH
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEMWGRYKMQWV  245 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~  245 (249)
                      ...|+...+|..|.++...|+.+|.+.+|.+.  .++++.+.++.+|+..+.... ..++..+..++..
T Consensus        64 ~~~vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~-~~~~~~~~a~~~~  131 (310)
T d1ve5a1          64 PKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV-TAKNREEVARALQ  131 (310)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC-CTTTHHHHHHHHH
T ss_pred             cCCccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec-cchhHHHHHHHHH
Confidence            34454446899999999999999997666664  356888999999997775433 3344544444443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.71  E-value=0.8  Score=30.69  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..++++|+|+|.+|.-..+....+|. .|..+...
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~   54 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAM   54 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEee
Confidence            45889999999999999999999999 55555433

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.63  E-value=0.62  Score=35.58  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      .+||.| ++++|.+.++.....|+ +|+.+ .+++++.+.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~   42 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEV   42 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHH
Confidence            567777 79999999999889999 67665 4566555444

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.28  E-value=0.56  Score=35.62  Aligned_cols=51  Identities=6%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHc
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~  222 (249)
                      ++...++||++||=+|+|. |..+..+++......|++++.++.-++.+++.
T Consensus        67 l~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            3456789999999998765 77777888876555899999999888877654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=0.57  Score=35.69  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      ...+|+|.|+|++|..++..+-..|..++..+|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3479999999999999999999999999999874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.23  E-value=0.91  Score=30.21  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++|.|+|.+|.-+++..+.+|. .|-.+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            4789999999999999999999999 677776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=85.15  E-value=0.92  Score=31.75  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHH
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRL  216 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  216 (249)
                      ...+|.|+|+|.+|......+...| ++.++.+|.++++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3568999999999998777777766 45899999887653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.69  E-value=0.98  Score=32.33  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=36.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      +|-|+|.|..|...+.-....|+ .|.+.++++++.+.+.+.++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            47788999999988887878899 79999999999998877654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.6  Score=32.81  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=27.8

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      +|+|+|+|.+|.+........|. .|..+++++++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHh
Confidence            68999999999887777777898 777777666543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.42  E-value=1.6  Score=31.07  Aligned_cols=41  Identities=20%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHH
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRL  216 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~  216 (249)
                      ..+..+|.|+|+|.+|..+...+...| ++.++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            456789999999999999888888887 46799999877653

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=1.3  Score=35.14  Aligned_cols=63  Identities=10%  Similarity=0.143  Sum_probs=44.8

Q ss_pred             HHHHHHHcC-CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEe--CChhHHHHHHHcCCCEEec
Q 025712          167 GVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  229 (249)
Q Consensus       167 a~~~l~~~~-~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~--~~~~~~~~~~~~ga~~vi~  229 (249)
                      +++.+.... -.+..+++...+|..|.+....|+..|...++.+.  .+.+|.+.++.+|++.++.
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~  127 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH  127 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECC
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEc
Confidence            344554432 23445555556899999999999999996666653  3668899999999987653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=0.61  Score=34.34  Aligned_cols=30  Identities=17%  Similarity=0.464  Sum_probs=25.9

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ++|+|+|..|+.+...+..+|. +|..++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 67778654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=84.19  E-value=0.88  Score=31.65  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      .+|.|+|+|.+|..+..+....+...++.++..+++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~   37 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGV   37 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecccc
Confidence            478889999999887777777777688999877665

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.17  E-value=0.86  Score=30.93  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +..++++|.|+|.+|.-.++..+.+|. .|..+...
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence            446899999999999999999999999 66666443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.16  E-value=0.98  Score=30.38  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..++++|+|+|.+|.-.+++...+|. .|-.+...
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~   55 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQ   55 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEec
Confidence            34799999999999999999999999 66666543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.97  E-value=0.7  Score=33.80  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .++++.|+|.|.+|....++++.+|. +|+..+...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 888887643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.94  E-value=0.54  Score=35.73  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      -|+|+|+|..|+++...+...|. +|.+++.++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            47888999999998888888899 788887664

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=1.1  Score=30.21  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=28.6

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++|.|+|.+|.-+.+.++.+|. .|..+.++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRH   54 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeec
Confidence            4789999999999999999999999 67777654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=83.87  E-value=1.3  Score=34.05  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=38.8

Q ss_pred             HHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          172 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       172 ~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ....++++.+||=+|+|. |..+..+++..|+ .|++++.++..++.+++
T Consensus        61 ~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          61 MTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            446889999999888664 6677888888898 89999999887776654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=83.82  E-value=1.2  Score=33.09  Aligned_cols=53  Identities=21%  Similarity=0.383  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEEecCC
Q 025712          176 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  231 (249)
Q Consensus       176 ~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~vi~~~  231 (249)
                      ..++.+||=+|+| .|..+..+++ .|+ .|+++|.+++-++.+++.+....+..+
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~   92 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAK   92 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECC
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeeccccccccccccccccccccc
Confidence            4577888877876 4888888876 488 899999999999999987766555433

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.39  E-value=1.2  Score=31.10  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=34.9

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHH-HHcCCCE
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE  226 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~-~~~ga~~  226 (249)
                      ++.++|+|..|.+.+.-....|. .+++.+++.++.+.+ +++|+..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~   47 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPY   47 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCB
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceee
Confidence            57788999999987776666677 788888888887776 5567543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.34  E-value=0.65  Score=34.01  Aligned_cols=31  Identities=16%  Similarity=0.241  Sum_probs=26.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      |+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7888999999998888888898 788887754

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=83.33  E-value=2.7  Score=29.49  Aligned_cols=51  Identities=18%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHc--CCCeEEEEeCChhH---HHHHHHcCCCEEecCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQR---LSIARNLGADETAKVS  231 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~--G~~~vi~~~~~~~~---~~~~~~~ga~~vi~~~  231 (249)
                      +++.|+| +|++|.-++.+.+..  .+ +|+++..+.+-   .+.+++|....++..+
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d   58 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDD   58 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESS
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhccccccc
Confidence            3688999 799999999999987  46 67777544433   3334678888887655

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.25  E-value=0.61  Score=35.05  Aligned_cols=31  Identities=32%  Similarity=0.659  Sum_probs=25.6

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      |+|+|+|..|+.+...+...|. +|++++.++
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            6788999999987777778899 788887653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.99  E-value=1  Score=30.35  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=27.6

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ..++++|+|+|.+|.-..+..+.+|.+..+ +.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vti-i~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTV-MVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEE-EESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEE-EEec
Confidence            447899999999999999999999995444 4443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.91  E-value=1.2  Score=32.61  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          175 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       175 ~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      .++++.+||=+|+|. |..+..+++. |. .++++|.+++-++.+++
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~   77 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKARE   77 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhh
Confidence            357889999888766 7777788874 77 89999999988877764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=82.85  E-value=1.5  Score=30.41  Aligned_cols=38  Identities=26%  Similarity=0.543  Sum_probs=30.4

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHH
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLS  217 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~  217 (249)
                      .+|.|+|+|.+|..+...+...|. +.++.+|.++++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468888999999998888877774 57999998886643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.79  E-value=1.3  Score=34.91  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=28.5

Q ss_pred             CCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          178 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       178 ~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      .-+++||+| +|-+|...+..+...|. .|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            447899998 79999999999999999 7888864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=0.71  Score=36.55  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=27.0

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCChhH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  215 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~~~  215 (249)
                      +|||+| +|-+|...++.+...|.-.|++++....+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~   37 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA   37 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence            689998 79999998887777884378888665443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.65  E-value=1.5  Score=31.34  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCC
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  224 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga  224 (249)
                      ..|-|+|.|.+|...+.-....|+ .|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            457789999999887777777899 79999999999998876544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.54  E-value=1.1  Score=29.67  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=28.2

Q ss_pred             CCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          179 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       179 g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      .++++|.|+|.+|.-+++..+.+|. .|-.+...
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeee
Confidence            4889999999999999999999999 67777554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=82.14  E-value=1.3  Score=30.64  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             eEEEEcCChHHHHHHHHHHHcC-CCeEEEEeCChhHHH
Q 025712          181 NVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLS  217 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G-~~~vi~~~~~~~~~~  217 (249)
                      +|.|+|+|.+|......+...+ ++.++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            5788899999998877777776 468999988776644

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=82.03  E-value=1.2  Score=32.82  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      ++.++++++++||=+|+| .|..+..+++. |. .++++|.+++-++.+++
T Consensus         8 l~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~   55 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARA   55 (231)
T ss_dssp             HHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhh
Confidence            467899999999999866 36666666654 66 89999999887776643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.83  E-value=1.6  Score=31.42  Aligned_cols=48  Identities=25%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHH
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  221 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~  221 (249)
                      +...++++|++||=+|+|. |..++.+++. +. +|++++.+++..+.+++
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHH
Confidence            3557899999988777543 4445566654 44 89999999988888864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.83  E-value=0.71  Score=36.37  Aligned_cols=32  Identities=25%  Similarity=0.512  Sum_probs=27.4

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      .|+|+|+|..|++++..++..|. .+++.+.++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            47888999999999999999999 688887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.82  E-value=0.83  Score=30.79  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCCh
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  213 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~  213 (249)
                      +..++++|+|+|.+|.-.++....+|. .|-.+.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence            345899999999999999999999999 676775543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.63  E-value=0.75  Score=33.78  Aligned_cols=30  Identities=30%  Similarity=0.538  Sum_probs=25.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      |+|+|+|+.|+.+...+...|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            6788999999999999999999 67777653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=0.37  Score=34.95  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      ++++.|+|+|+|..|+.+...+...|. .+..++.
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~   36 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITG   36 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEe
Confidence            356789999999999999999999999 5666654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.35  E-value=1.1  Score=30.17  Aligned_cols=45  Identities=22%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             CeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCCEE
Q 025712          180 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET  227 (249)
Q Consensus       180 ~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~~v  227 (249)
                      ++++|.|.|.+|...++..+  +. .+++++.++++.+.+++.|...+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i   45 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFV   45 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccc
Confidence            45788899999998777654  44 56777888888888888886544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.33  E-value=0.83  Score=34.56  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             HHHcCCCCCCeEEEEcCChHHHHHHHHHHHcCC-CeEEEEeCChhHHHHHHHc
Q 025712          171 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL  222 (249)
Q Consensus       171 l~~~~~~~g~~vlI~G~g~vG~~ai~la~~~G~-~~vi~~~~~~~~~~~~~~~  222 (249)
                      ++...++||++||=+|+|. |..+..+++..|- ..|++++.+++..+.+++.
T Consensus        66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~  117 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI  117 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            3456799999999888765 7788889998763 4899999999888877553

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=81.23  E-value=0.67  Score=35.12  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.6

Q ss_pred             eEEEEcCChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          181 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       181 ~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +|+|+|+|..|+.+...+...|. +|.+++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            58899999999999988888999 68888654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=81.22  E-value=5.7  Score=26.47  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCCh------------hHHHHHHHcCCCEEecCCCCcccHHHHHH
Q 025712          176 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV------------QRLSIARNLGADETAKVSTDIEMWGRYKM  242 (249)
Q Consensus       176 ~~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~~------------~~~~~~~~~ga~~vi~~~~~~~~~~~~~~  242 (249)
                      +.++.+|+|.| +|.-|....+.++..|-+.|.++...+            .-.+..++.|++.-+.|-.. +-..+++.
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp-~~a~dA~~   81 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSIL   81 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccH-HHHHHHHH
Confidence            35678999999 899999999999999984444553222            12556677888877777752 34566666


Q ss_pred             HHHH
Q 025712          243 QWVQ  246 (249)
Q Consensus       243 ~~~~  246 (249)
                      |+.+
T Consensus        82 EAi~   85 (119)
T d2nu7a1          82 EAID   85 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.12  E-value=2.2  Score=30.84  Aligned_cols=48  Identities=17%  Similarity=0.170  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHHHHHHHcCCC
Q 025712          178 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD  225 (249)
Q Consensus       178 ~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~~~~~~~ga~  225 (249)
                      ++++|.|+|-|+=|.+..+-+|-.|.+.+|+........+.+++-|.+
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~   62 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK   62 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc
Confidence            578999999999999999999999998788886665667777776653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.11  E-value=0.94  Score=35.78  Aligned_cols=32  Identities=22%  Similarity=0.090  Sum_probs=27.2

Q ss_pred             CeE-EEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          180 TNV-MIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       180 ~~v-lI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      ++| ||+| +|-+|...+..+...|+ .|+++++.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            467 9998 79999999998888999 89988763

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.11  E-value=1.1  Score=35.19  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      ++|||+| +|-+|...+..+...|. .|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            6899998 79999998888888999 7888864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=0.84  Score=32.46  Aligned_cols=29  Identities=31%  Similarity=0.482  Sum_probs=25.1

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          182 VMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       182 vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      |+|+|+|..|+.|...+...|. ++..++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            6888999999999999999999 5777764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=81.06  E-value=2.7  Score=29.01  Aligned_cols=61  Identities=10%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             HHHHcCCCCCCeEEEE-cCChHHHHHHHHHHHc-CCCeEEEEeCChhHHHHHHHcCCCEEecC
Q 025712          170 ACRRANVGPETNVMIM-GSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKV  230 (249)
Q Consensus       170 ~l~~~~~~~g~~vlI~-G~g~vG~~ai~la~~~-G~~~vi~~~~~~~~~~~~~~~ga~~vi~~  230 (249)
                      .+..+++..-+.+++. +.-..-.+++..++.. +..++++...+++..+.++++|++.+++.
T Consensus        63 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p  125 (153)
T d1id1a_          63 VLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSP  125 (153)
T ss_dssp             HHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred             HHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECH
Confidence            4577888888888876 4556667778888876 34368888889999999999999999854

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=1.1  Score=35.92  Aligned_cols=32  Identities=16%  Similarity=0.032  Sum_probs=27.2

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeCC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  212 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~~  212 (249)
                      +.+||+| +|-+|...+..+...|. .|+++++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            6788998 79999999998888999 89998863

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.77  E-value=1.1  Score=35.75  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             CCCCeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +.+.+|||+| +|-+|...+..+...|. .|+++++
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            4678999998 79999999999999999 7888754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.70  E-value=1.1  Score=35.15  Aligned_cols=31  Identities=16%  Similarity=-0.020  Sum_probs=27.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      +++||+| +|-+|...+..+...|. .|+++++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEEC
Confidence            6789998 79999999999999999 7998875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.54  E-value=1.8  Score=30.29  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeC
Q 025712          177 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  211 (249)
Q Consensus       177 ~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~  211 (249)
                      ..+++|+|+|+|.+|.=++..+...|+..|..+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEe
Confidence            45778999999999999999999999977766643

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.41  E-value=7.9  Score=29.71  Aligned_cols=47  Identities=21%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             EEE-cCChHHHHHHHHHHHcCCCeEEEEeC--ChhHHHHHHHcCCCEEec
Q 025712          183 MIM-GSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAK  229 (249)
Q Consensus       183 lI~-G~g~vG~~ai~la~~~G~~~vi~~~~--~~~~~~~~~~~ga~~vi~  229 (249)
                      +|. .+|..|.++...|+.+|...++.+..  ++.|.+.++.+|++.++.
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~  107 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLT  107 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEe
Confidence            444 58999999999999999977777754  678999999999987653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.40  E-value=3.7  Score=32.20  Aligned_cols=30  Identities=27%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             CeEEEEc-CChHHHHHHHHHHHcCCCeEEEEe
Q 025712          180 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  210 (249)
Q Consensus       180 ~~vlI~G-~g~vG~~ai~la~~~G~~~vi~~~  210 (249)
                      +.|||+| +|-+|...+..+...|. .|++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE
Confidence            5789998 79999999888888998 788775

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=1.3  Score=34.86  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             cCCCCCCeEEEEcCChHHHHHHHHHHHcCCCeEEEEeCChhHH
Q 025712          174 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL  216 (249)
Q Consensus       174 ~~~~~g~~vlI~G~g~vG~~ai~la~~~G~~~vi~~~~~~~~~  216 (249)
                      ....++++||-+|+| .|..++.+|+ .|+..|++++.++.-.
T Consensus        31 ~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          31 PHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILY   71 (311)
T ss_dssp             GGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHH
T ss_pred             cccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence            456789999999866 3556666665 5877999999887543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.23  E-value=1.1  Score=34.49  Aligned_cols=38  Identities=11%  Similarity=0.126  Sum_probs=27.5

Q ss_pred             eEEEEc-CChHHHHHHHHHHHcCCCeEEEE-eCChhHHHHH
Q 025712          181 NVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA  219 (249)
Q Consensus       181 ~vlI~G-~g~vG~~ai~la~~~G~~~vi~~-~~~~~~~~~~  219 (249)
                      .+||+| ++++|.+..+.....|+ +|+.+ .+++++.+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~   43 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   43 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHH
Confidence            346777 68999999999999999 66665 4455555444