Citrus Sinensis ID: 025721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEEEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccEEEEEEEEEcccccEEcccccccccHHccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHcccccEEEEEEEEEEcccccccccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
masasatmtiipskfqnielfsprscrnytlchpnapksvnffhfqnsscffvrpslycnplMRRVQHVLKTVSAvdsgvevsitepedlitvkdAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLarsappipgfrrekggkttkvPRDFLIQILGEERVTKFVVQEIVRSTLTdytkkeglnvkdkkvTTTQKAEELrksfypgnefgFSAVLELEkseveesetetssssssdeendevpvs
Flexible Loop (DISEMBL)
masasatmtiipskfqniELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVsavdsgvevsitepedlitvkdakivvesqdedkiqvrvdltgdatqRVFDKVLtnlarsappipgfrrekggkttkvPRDFLIqilgeervtkfvVQEIVRstltdytkkeglnvkdkkvtttqkaeelrksfypgnefGFSAVLELEKSEVeesetetssssssdeendevpvs
Low Complexity Region (SEG)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFsavlelekseveesetetssssssdeendevpvs
Disordered region (IsUnstruct)
********TIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR****************TKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLN******************FYPGNEFGFSAV*******************************
Disordered Region (DISOPRED)
*************KFQNIELFSPRSCRNYTLCH*****************FFV************************************************S*DEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTT**KAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPV*
Disordered Region (DISEMBL)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE***************************
Disordered Region (DISPRO)
******TMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASASATMTIIPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
B7JW76	455	Trigger factor OS=Cyanoth	yes	no	0.465	0.254	0.293	4e-08
B0JL93	464	Trigger factor OS=Microcy	yes	no	0.465	0.25	0.293	6e-07
Q118P4	485	Trigger factor OS=Trichod	yes	no	0.433	0.222	0.284	1e-06
Q8YQX9	471	Trigger factor OS=Nostoc	yes	no	0.429	0.227	0.264	3e-06
Q3M725	471	Trigger factor OS=Anabaen	yes	no	0.429	0.227	0.264	3e-06
B2IT89	480	Trigger factor OS=Nostoc	yes	no	0.429	0.222	0.273	1e-05
Q8DLI3	473	Trigger factor OS=Thermos	yes	no	0.453	0.238	0.255	1e-05
Q935Z3	474	Trigger factor OS=Synecho	yes	no	0.469	0.246	0.259	1e-05
Q5N1P5	474	Trigger factor OS=Synecho	yes	no	0.469	0.246	0.259	1e-05
Q3B0U0	447	Trigger factor OS=Synecho	yes	no	0.449	0.250	0.283	0.0001

>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 10/126 (7%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+  E   + +I + ++++ +A+++ ++  +  LAR+A  IPGFR+       KVPR  L
Sbjct: 2   KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRK------GKVPRQIL 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
           +Q +G E +    +QE++  +L    K+E L ++ D ++ +  K +EL + F PG    F
Sbjct: 55  LQRIGTEYIKATTLQELIEDSLKAAIKQESLESIGDFELKS--KFDELVQQFKPGEPLTF 112

Query: 216 SAVLEL 221
           SA +++
Sbjct: 113 SAAIDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Cyanothece sp. (strain PCC 8801) (taxid: 41431)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K++ E     +I + +++  + T+   ++V+ NLA+S   IPGFR        KVPR  L
Sbjct: 2   KVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVN-IPGFR------PGKVPRQIL 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
           +Q LG + V   V++E++ + L    K+EG+ ++ + ++ +  K E+L  ++ PG    F
Sbjct: 55  LQRLGTKAVKAAVIEELIENCLESALKQEGIESLGNPQLLS--KFEDLIAAYEPGKALTF 112

Query: 216 SAVLEL 221
           S  L++
Sbjct: 113 SVSLDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + ++++ + ++  +++++    RSA  IPGFR+       KVPR+ LIQ LG+  + 
Sbjct: 12  QISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRK------GKVPRNILIQRLGKNYIK 64

Query: 167 KFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
              + +++ + L    ++E +    +    T+  EEL K F PG E  FSA +++E
Sbjct: 65  AMALDDLINNCLEKAREQESIKAIGQFELKTE-FEELVKDFEPGKEMAFSAKVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 167 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
              ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F+A +++E
Sbjct: 65  AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 68/117 (58%), Gaps = 10/117 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L+Q LG+  + 
Sbjct: 12  QIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVLLQRLGKTHIK 64

Query: 167 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
              ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F+A +++E
Sbjct: 65  AAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 107 KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 166
           +I + +++T + T++ +++V+ NLA +A  IPGFRR       KVPR  L+Q LG  R+ 
Sbjct: 12  QIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPILLQRLGTTRIK 64

Query: 167 KFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 222
              ++E+++  +    K+E +  +   ++ ++   E+L  ++ PG      A +++E
Sbjct: 65  AAALEELIQDGIEQAVKQEAIPAIGQPQLRSS--FEDLINNYEPGKPLTILAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 98  IVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLI 157
           +  E +   ++   ++++G  +Q+V+++V+ +L R    +PGFR  KG    K PR  ++
Sbjct: 1   MTTEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFR--KG----KAPRQLVL 53

Query: 158 QILGEERVTKFVVQEIVRSTLTDYTKKEGL----NVKDKKVTTTQKAEELRKSFYPGNEF 213
           Q LG ER+    +++++   +    +K  +    N++     T     EL   F+PG  F
Sbjct: 54  QQLGRERLRYLAMEKLIEDAVKTAVEKNNIPYLGNLELAGGIT-----ELLDQFHPGENF 108

Query: 214 GFSAVLELE 222
            FS   ++E
Sbjct: 109 SFSVTFDVE 117

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGESFSF 114

Query: 216 SAVLELE 222
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 215
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGKSFSF 114

Query: 216 SAVLELE 222
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3B0U0|TIG_SYNS9 Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 8/120 (6%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+  ES+   ++ V V + G+     +++ + +L+RS   +PGFR+       KVPR  L
Sbjct: 7   KVSTESRPSSRLAVTVTVPGERCTASYEEAIKSLSRSIN-LPGFRK------GKVPRSVL 59

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 216
           +Q LG  R+    +++++ S   D  K+E L    +   ++   + L +SF PG+E  F+
Sbjct: 60  VQQLGGVRIKATALEKLIDSAWRDAIKQESLEPISQPDLSS-GFDGLLESFNPGDELTFT 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255579456	216	conserved hypothetical protein [Ricinus	0.819	0.944	0.574	1e-57
225434092	232	PREDICTED: uncharacterized protein LOC10	0.851	0.913	0.566	8e-57
296084278	440	unnamed protein product [Vitis vinifera]	0.851	0.481	0.557	4e-56
388492748	233	unknown [Lotus japonicus]	0.835	0.892	0.473	3e-52
449445840	247	PREDICTED: uncharacterized protein LOC10	0.638	0.643	0.625	5e-52
388513321	221	unknown [Medicago truncatula]	0.646	0.728	0.555	2e-47
224122010	123	predicted protein [Populus trichocarpa]	0.417	0.845	0.723	7e-37
115441583	229	Os01g0894700 [Oryza sativa Japonica Grou	0.598	0.650	0.525	7e-37
222619669	398	hypothetical protein OsJ_04389 [Oryza sa	0.598	0.374	0.525	9e-37
226501210	249	uncharacterized protein LOC100274034 [Ze	0.911	0.911	0.400	1e-36

>gi|255579456|ref|XP_002530571.1| conserved hypothetical protein [Ricinus communis] gi|223529870|gb|EEF31801.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 156/214 (72%), Gaps = 10/214 (4%)

Query: 25  SCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCN--PLMRRVQHVLKTVSAVDSGVEV 82
           S +NY  C+ N     N  +   ++ F +R     N     R ++HV K +SAV SG+E 
Sbjct: 10  SLKNYCSCNYNCTLRNN--NITTTTSFKLRLPFSSNYKGKKRVLEHVFKPISAVGSGLET 67

Query: 83  SITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 141
           + T+P+D  IT+K+AK+VVES  E+KIQ+RVDL+GD T+ VF KVL NLAR+APPIPGFR
Sbjct: 68  TFTDPKDNAITLKNAKVVVESMQENKIQLRVDLSGDETEIVFSKVLANLARTAPPIPGFR 127

Query: 142 REKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAE 201
           REKGG    VPRDFL+QILGEERVTKFV+QEIV S++ DY KKE LNVK+ KV T Q+A+
Sbjct: 128 REKGGDFRLVPRDFLLQILGEERVTKFVIQEIVSSSVADYVKKENLNVKENKVNTVQEAD 187

Query: 202 ELRKSFYPGNEFGFSAVLELEKSEVEESETETSS 235
           EL+K F PGN+FGF+AVLEL     EE++TETSS
Sbjct: 188 ELKKLFIPGNDFGFNAVLEL-----EETKTETSS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434092|ref|XP_002275949.1| PREDICTED: uncharacterized protein LOC100247585 [Vitis vinifera]

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 158/219 (72%), Gaps = 7/219 (3%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLY-CNPLM 63
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q   C  +   LY CN   
Sbjct: 2   ACMTMAISSQSLNFNRFFVRCCHDHVISCQNT-TSISFPHRQQDLCGRL---LYPCNLHQ 57

Query: 64  RRVQHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 122
             ++ + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRV
Sbjct: 58  GSLRFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRV 117

Query: 123 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 182
           FD VLTNLARSAPPIPGFRR+KGGKT+ VP+ FL+QILGEERVTKFV+QEI+ +T++DY 
Sbjct: 118 FDHVLTNLARSAPPIPGFRRQKGGKTSNVPKSFLLQILGEERVTKFVIQEIITATVSDYV 177

Query: 183 KKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 221
            KE LNVKDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 178 MKENLNVKDKKITTTPAAEELKSLFTPGNEFRFNATLEL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084278|emb|CBI24666.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 156/219 (71%), Gaps = 7/219 (3%)

Query: 6   ATMTI-IPSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLY-CNPLM 63
           A MT+ I S+  N   F  R C ++ +   N   S++F H Q   C  +   LY CN   
Sbjct: 210 ACMTMAISSQSLNFNRFFVRCCHDHVISCQNTT-SISFPHRQQDLCGRL---LYPCNLHQ 265

Query: 64  RRVQHVLKTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 122
             ++ + K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRV
Sbjct: 266 GSLRFLSKPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRV 325

Query: 123 FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 182
           FD VLTNLARSAPPIPGFRR+KGG +  VP+ FL+QILGEERVTKFV+QEI+ +T++DY 
Sbjct: 326 FDHVLTNLARSAPPIPGFRRQKGGNSLYVPKSFLLQILGEERVTKFVIQEIITATVSDYV 385

Query: 183 KKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 221
            KE LNVKDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 386 MKENLNVKDKKITTTPAAEELKSLFTPGNEFRFNATLEL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492748|gb|AFK34440.1| unknown [Lotus japonicus]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/247 (47%), Positives = 158/247 (63%), Gaps = 39/247 (15%)

Query: 1   MASASATMTIIPSKFQNIELFSPRSC--------RNYTLCHPNAPKSVNFFHFQNSSCFF 52
           M  AS + +I P        F+ R+C          + L  PNA           S C  
Sbjct: 1   MMLASCSSSITPGAAS----FTTRTCCSHAHVQVHVHVLAPPNA----------QSRCIV 46

Query: 53  VRPSLYCNPLMRR-------------VQHVLKTVSAVDSGVEVSITEP-EDLITVKDAKI 98
              SL   P +RR             ++H+   +SAV+SG+E SIT+  E+   + +A+I
Sbjct: 47  ---SLSLGPPLRRKSLDILSSSTRTTLRHLNTPISAVNSGLEASITDSDENSAILTNAQI 103

Query: 99  VVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQ 158
           V+ES+DE KIQ+RVDLTGD T+RVFD+ L +L R+APP+PGFR +KGGK++K+P+ FL+Q
Sbjct: 104 VLESEDESKIQLRVDLTGDQTERVFDRTLISLGRTAPPVPGFRMQKGGKSSKIPKSFLVQ 163

Query: 159 ILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAV 218
           ILGEERVTKFV+QEI+ ST+ +Y KKE L+VK KKV+TTQ AEEL+KSF PG EFGF+ +
Sbjct: 164 ILGEERVTKFVIQEILNSTMANYAKKENLDVKGKKVSTTQTAEELKKSFTPGKEFGFNVI 223

Query: 219 LELEKSE 225
           +E E SE
Sbjct: 224 IEPENSE 230

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445840|ref|XP_004140680.1| PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus]

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 100/160 (62%), Positives = 135/160 (84%), Gaps = 1/160 (0%)

Query: 71  KTVSAVDSGVEVSITEPE-DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 129
           K  S   SG+E +IT+ + + IT+K+AK+VVES++E+KIQ+RVDLTGD TQ+VFD+VLTN
Sbjct: 88  KPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTN 147

Query: 130 LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 189
           LARSAPP+PGFR++KGGKT+ VP+ FL+++LG++RVTKF++QEI+ ST+ DY KKE +NV
Sbjct: 148 LARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNSTMVDYAKKENINV 207

Query: 190 KDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEES 229
           KDKKV+TTQ A+EL+  F PG EFGF+A+LELE +   ES
Sbjct: 208 KDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513321|gb|AFK44722.1| unknown [Medicago truncatula]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 127/162 (78%), Gaps = 1/162 (0%)

Query: 66  VQHVLKTVSAVDSGVEVSITEPEDLIT-VKDAKIVVESQDEDKIQVRVDLTGDATQRVFD 124
           ++H+   +SAV+SG+E SIT+  D+   + DA +V E  D+++IQ+RVDLTG  TQ+VFD
Sbjct: 56  LRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNRIQLRVDLTGVQTQKVFD 115

Query: 125 KVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           ++  NL R+APP+PGFR +KGGK++K+P+DFL+Q+LGEERVTKF +QEI+  T+ DYTKK
Sbjct: 116 RIPINLGRTAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKK 175

Query: 185 EGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEV 226
           E L+ KDKKV+T Q  +EL+KSF  G EFGF+ ++E + SEV
Sbjct: 176 ENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEV 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122010|ref|XP_002330708.1| predicted protein [Populus trichocarpa] gi|222872312|gb|EEF09443.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%), Gaps = 1/105 (0%)

Query: 81  EVSITEP-EDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG 139
           + SI E  E LI +K+ KIV+ESQ+EDK+QVRVDL+GD TQ+VF+K LT+LARSAPPIPG
Sbjct: 12  QASIAETNEKLIALKNVKIVIESQEEDKMQVRVDLSGDETQKVFNKALTDLARSAPPIPG 71

Query: 140 FRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 184
           FRREKGGKTT VPR+FL+QILGE+RVT FV+QEIV ST+ DY KK
Sbjct: 72  FRREKGGKTTNVPREFLLQILGEDRVTNFVIQEIVTSTMADYVKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441583|ref|NP_001045071.1| Os01g0894700 [Oryza sativa Japonica Group] gi|57899810|dbj|BAD87555.1| unknown protein [Oryza sativa Japonica Group] gi|113534602|dbj|BAF06985.1| Os01g0894700 [Oryza sativa Japonica Group] gi|218189519|gb|EEC71946.1| hypothetical protein OsI_04765 [Oryza sativa Indica Group]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 91  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 150
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 78  LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 137

Query: 151 VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 210
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 138 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 196

Query: 211 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 244
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 197 SSFSFSVVLQLEKPESD----ETSENSESDEASE 226

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619669|gb|EEE55801.1| hypothetical protein OsJ_04389 [Oryza sativa Japonica Group]

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 91  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 150
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 247 LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 306

Query: 151 VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 210
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 307 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 365

Query: 211 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 244
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 366 SSFSFSVVLQLEKPESD----ETSENSESDEASE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501210|ref|NP_001141889.1| uncharacterized protein LOC100274034 [Zea mays] gi|194706316|gb|ACF87242.1| unknown [Zea mays] gi|414879251|tpg|DAA56382.1| TPA: hypothetical protein ZEAMMB73_395550 [Zea mays]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 138/237 (58%), Gaps = 10/237 (4%)

Query: 12  PSKFQNIELFSPRSCRNYTLCHPNAPKSVNFFHFQNSSCFFVRPSLYCNPLMRRV--QHV 69
           PS    ++L S   C   +  H   PK     H    +C   +   + + L+     +  
Sbjct: 14  PSPLPKVQLIS---CPVDSFQHALNPKVTGQVHAHTKTCGACKCPTHIHGLLVSAGGRRT 70

Query: 70  LKTVSAVDSGVEVSITEPE---DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKV 126
              VSAV SG   S+TE +   DL ++++ K  V S+D +KI VRV L G ATQ+VFD+ 
Sbjct: 71  FLPVSAVGSGQGSSVTEADRKSDL-SLENVKTSVVSRDGEKINVRVQLPGKATQKVFDEA 129

Query: 127 LTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEG 186
           LT LAR APP+PGFR+ KGGKT+ +P   L+Q+LG+ RVTKFV+QEI+  T+ ++ KKE 
Sbjct: 130 LTFLARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVTKFVLQEILSITIEEFVKKEN 189

Query: 187 LNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEEN 243
           L VK  ++ TTQ   E+  +F PG+ FGF+ VL+LE  + ++ E +  S     EE+
Sbjct: 190 LKVK-PEIQTTQSEGEMESAFAPGSAFGFNVVLQLETPDSDDPEEKPGSDDDLQEES 245

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:505006279	199	AT2G30695 "AT2G30695" [Arabido	0.654	0.819	0.396	2e-24

TAIR|locus:505006279 AT2G30695 "AT2G30695" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 69/174 (39%), Positives = 98/174 (56%)

Query:    45 FQNSSCFFVRPSLYC--NPLMRRVQH-VLKTVSAVDSGVEVSITEPEDLITVKDAKIVVE 101
             FQ SS F   P  Y     L  R  +     V A  S VE S  +   LIT    K+  E
Sbjct:    24 FQFSS-FLTLPPTYSVQQKLCTRATNRQFVAVCAAPSDVETSSKDESVLIT----KVETE 78

Query:   102 SQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILG 161
             + +E K+ V+V  +G+ TQ VF+ V   +  +A PIPGFRR KGGKT  +P+D L++ILG
Sbjct:    79 TSNEVKVHVQV--SGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILG 136

Query:   162 EERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGF 215
               +V K V+++++ S + DY K+E L V  K++T  Q  E+L ++F PG  F F
Sbjct:   137 YSKVYKQVIKKLINSAIEDYVKQEDLKV-GKELTVVQSYEDLEETFEPGESFSF 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      249       215   0.00087  112 3  11 22  0.37    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.15u 0.10s 21.25t   Elapsed:  00:00:01
  Total cpu time:  21.15u 0.10s 21.25t   Elapsed:  00:00:01
  Start:  Fri May 10 23:55:05 2013   End:  Fri May 10 23:55:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam05697	145	pfam05697, Trigger_N, Bacterial trigger factor pro	4e-07
COG0544	441	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans	2e-05
TIGR00115	408	TIGR00115, tig, trigger factor	8e-05

>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF)

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 15/143 (10%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+ VE  +  ++++ V++  +  +   DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVKLTVEVPAEEVEEAVDKALKELAKKV-KIPGFR--KG----KVPRSVV 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK---KVTTTQKAEELRKSF----YP 209
            +  G+E + +  ++++++    +  K+E L    +   +    +  ++   +     YP
Sbjct: 55  KKRYGKE-IYQEALEDLLQEAYEEALKEEKLEPIGQPEIEEVELEDGKDFEFTAEFEVYP 113

Query: 210 GNEFGFSAVLELEKSEVEESETE 232
             E G    LE+EK EVE ++ +
Sbjct: 114 EVELGDYKGLEVEKPEVEVTDED 136

In the E. coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. Length = 145

>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           K+ VE  +  ++++ V++  +  ++  DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFR--KG----KVPRKVI 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKD---KKVTTTQKAEELRKSF----YP 209
            Q  GE  V + V+ E++     +  K+EGL        ++T  +K E+   +     YP
Sbjct: 55  EQRYGEA-VRQDVLNELLPEAFEEAIKEEGLKPAGQPEIEITEFEKGEDFEFTAEVEVYP 113

Query: 210 GNEFGFSAVLELEKSEVEESETE 232
             E G    +E+EK  VE ++ +
Sbjct: 114 EVELGDYKGIEVEKPVVEVTDED 136

Length = 441

>gnl|CDD|232831 TIGR00115, tig, trigger factor

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 110 VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFV 169
           + V++  +  +   DK L  LA++   IPGFR  KG    KVPR  + +  G+E V +  
Sbjct: 3   LTVEVPAEEVEEEVDKALKELAKTVK-IPGFR--KG----KVPRSVVEKRYGKE-VRQEA 54

Query: 170 VQEIVRSTLTDYTKKEGLNV 189
           + E+++   ++  K+E +  
Sbjct: 55  LNELLQEAFSEAVKEEKIRP 74

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome [Protein fate, Protein folding and stabilization]. Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PF05697	145	Trigger_N: Bacterial trigger factor protein (TF);	99.93
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
PRK01490	435	tig trigger factor; Provisional	99.89
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.82

>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state

Probab=99.93  E-value=1.9e-25  Score=183.98  Aligned_cols=113  Identities=26%  Similarity=0.556  Sum_probs=101.4

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+|+++..+++.+.++|+|++++++.+++++|++++++++ ||||||  |    |||+++|+++||.+ |++++++++++
T Consensus         1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~   72 (145)
T PF05697_consen    1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ   72 (145)
T ss_dssp             -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred             CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    99999999999996 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      .+|.+|+++++++|++ .|.+.      ...+++|++|+|++.|++.+
T Consensus        73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~P  113 (145)
T PF05697_consen   73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVFP  113 (145)
T ss_dssp             HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE--
T ss_pred             HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEecC
Confidence            9999999999999999 99885      35788999999999999973

The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.6e-23  Score=200.76  Aligned_cols=130  Identities=29%  Similarity=0.493  Sum_probs=119.0

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |++++++++++.+.|+|+||++.+++.++++|++++++++ ||||||  |    |||+.||+++|| +.|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~   72 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP   72 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999  9    999999999999 5799999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD  240 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~------~~E~~e~~~~~~~~~~~~  240 (249)
                      .+|.+|+++++|+|++ +|.+.      ...++.|++|.|++.++|+      .+.+.+++..+.+.++.|
T Consensus        73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~d  136 (441)
T COG0544          73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDED  136 (441)
T ss_pred             HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHHH
Confidence            9999999999999999 99765      3578899999999999998      456777777777777443

>PRK01490 tig trigger factor; Provisional

Probab=99.89  E-value=1.5e-22  Score=192.25  Aligned_cols=114  Identities=25%  Similarity=0.456  Sum_probs=107.9

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+++++.++++++.|+|+||+++|+..+++++++++++++ ||||||  |    |||+++|+++||++ |++++++++|+
T Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~   72 (435)
T PRK01490          1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP   72 (435)
T ss_pred             CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999  9    99999999999985 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS  224 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~~  224 (249)
                      .+|.+|+++++|+|++ +|.+..      ..++++++|+|+++|+|+|.
T Consensus        73 ~~~~~~i~~~~~~~~~-~p~i~~------~~~~~~~~~~~~~~~~v~Pe  114 (435)
T PRK01490         73 EAYEEAIKEEGIRPAG-QPEIEP------TEEEKGKDLEFTAEVEVYPE  114 (435)
T ss_pred             HHHHHHHHHcCCCcCC-CCcccc------cccCCCCcEEEEEEeeecCC
Confidence            9999999999999999 999862      45778899999999999843

>TIGR00115 tig trigger factor

Probab=99.82  E-value=5.1e-20  Score=173.55  Aligned_cols=102  Identities=26%  Similarity=0.487  Sum_probs=95.1

Q ss_pred             EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025721          108 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGL  187 (249)
Q Consensus       108 i~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~~~~~eAlkee~L  187 (249)
                      +.|+|+||+++++..++++|++++++++ ||||||  |    |||+++|+++||++ |+.++++++|+.+|.+|+++++|
T Consensus         1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~~-i~~e~~~~li~~~~~~~~~~~~~   72 (408)
T TIGR00115         1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGKE-VRQEALNELLQEAFSEAVKEEKI   72 (408)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999999999 999999  9    99999999999984 99999999999999999999999


Q ss_pred             ccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025721          188 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS  224 (249)
Q Consensus       188 ~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~~  224 (249)
                      +|+| +|.+.      ...+.+|++|+|+++|++.|.
T Consensus        73 ~~~~-~p~~~------~~~~~~~~~~~~~~~~~v~Pe  102 (408)
T TIGR00115        73 RPIG-QPEIE------VKEIEDGKDLEFTAEFEVYPE  102 (408)
T ss_pred             CcCC-CCccc------cccccCCCCEEEEEEEEecCc
Confidence            9999 99986      246778999999999999843

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	3e-07
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 76/256 (29%)

Query: 30  TLCH-------------PNAPKSVNFFHFQNSSCFFVRPSLYCNPL--MRRVQHVLKTVS 74
            L +              N    ++    +       +P  Y N L  +  VQ+  K  +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNA-KAWN 260

Query: 75  AVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVD-----LTGDATQRVFDKVLTN 129
           A +   ++       L+T +  ++           + +D     LT D  + +  K L  
Sbjct: 261 AFNLSCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 130 LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 189
             +  P     R          P    + I+ E      +   +      D  K     V
Sbjct: 314 RPQDLP-----REVLTTN----P--RRLSIIAE-----SIRDGLATW---DNWKH----V 350

Query: 190 KDKKVTTTQKA-------EELRKSFYPGNEFG-F-------SAVLEL-----EKSEVEES 229
              K+TT  ++        E RK F        F       + +L L      KS+V   
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 230 ETETSSSSSSDEENDE 245
             +    S  +++  E
Sbjct: 408 VNKLHKYSLVEKQPKE 423

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 100 VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQI 159
           + S++ +K++ +V +      R +D+V   LAR    +PGFR   G    K PR  +   
Sbjct: 4   LISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFR--PG----KAPRKVIENR 56

Query: 160 LGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVL 219
           +G+  V   V   ++ +  +   ++ GLN+ D  V               G  F F+   
Sbjct: 57  VGKGYVESQVRDRLLETHYSQGLRELGLNLVDATVDPQDVQS--------GQAFEFTVKG 108

Query: 220 E 220
           E
Sbjct: 109 E 109

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 19/126 (15%)

Query: 97  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 156
           ++    +D++++ +      +   +  DK +  L +    IPGFR  KG    ++P++ L
Sbjct: 2   EVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFR--KG----RIPKNVL 54

Query: 157 IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 216
              LGEE       +  +   +          +KD+K+  +    E              
Sbjct: 55  KMKLGEE-----FQEYTLDFLMDLIPDT----LKDRKLILSPIVTERELK---DVTARVV 102

Query: 217 AVLELE 222
             +  E
Sbjct: 103 VEVHEE 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
1p9y_A	121	Trigger factor, TF; alpha-beta protein, isomerase;	99.96
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	99.96
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	99.95
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.93
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.91
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	99.81

>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*

Probab=99.96  E-value=4.1e-29  Score=201.28  Aligned_cols=114  Identities=24%  Similarity=0.386  Sum_probs=108.2

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025721           95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  174 (249)
Q Consensus        95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI  174 (249)
                      .|+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||+ .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i   74 (121)
T 1p9y_A            3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM   74 (121)
T ss_dssp             -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 999999  9    9999999999997 59999999999


Q ss_pred             HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          175 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       175 ~~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      +++|.+|+++++|+|++ +|.++.      ..+++|++|+|+++|+|++
T Consensus        75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P  116 (121)
T 1p9y_A           75 SRNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP  116 (121)
T ss_dssp             HHHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHHHcCCCCCC-CCcccc------cccCCCCCEEEEEEEEEcC
Confidence            99999999999999999 999862      4578899999999999984

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7

Probab=99.96  E-value=1.6e-29  Score=201.03  Aligned_cols=112  Identities=24%  Similarity=0.455  Sum_probs=95.6

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |++++++ ++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||++.|++++++++|+
T Consensus         1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~   72 (112)
T 2d3o_1            1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE   72 (112)
T ss_dssp             ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred             CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8899999 99999999999999999999999999999999 999999  9    99999999999955799999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      ++|.+|+++++|+|++ +|.++      .. +++|++|+|+++|+|++
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~------~~-~~~~~~~~f~~~~ev~P  112 (112)
T 2d3o_1           73 THYSQGLRELGLNLVD-ATVDP------QD-VQSGQAFEFTVKGETYP  112 (112)
T ss_dssp             HHHHHHHHHSCCCCCC-EECCC------CC-CCSSSCCCEEEEEC---
T ss_pred             HHHHHHHHHcCCCCCC-CCccc------cc-ccCCCCEEEEEEEEecC
Confidence            9999999999999999 99986      24 78899999999999874

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A

Probab=99.95  E-value=3.2e-28  Score=192.71  Aligned_cols=109  Identities=18%  Similarity=0.325  Sum_probs=103.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||+ .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~   72 (109)
T 2nsc_A            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (109)
T ss_dssp             CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 599999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      + |.+|+++++|  ++ +|.++.      ..++ |++|+|+++|+|++
T Consensus        73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P  109 (109)
T 2nsc_A           73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP  109 (109)
T ss_dssp             T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred             H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence            9 9999999999  99 998862      4577 99999999999874

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.93  E-value=4.1e-25  Score=207.71  Aligned_cols=131  Identities=21%  Similarity=0.340  Sum_probs=117.2

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025721           95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  174 (249)
Q Consensus        95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI  174 (249)
                      .|+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||++||+++||+ .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~~   74 (392)
T 1t11_A            3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVM   74 (392)
T ss_dssp             CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 999999  9    9999999999996 69999999999


Q ss_pred             HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCCc
Q 025721          175 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSSD  240 (249)
Q Consensus       175 ~~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~------~E~~e~~~~~~~~~~~~  240 (249)
                      +.+|.+|+++++|+|++ +|.++.      ..+++|++|+|+++|+|+|      +.+.+.+....+.++.|
T Consensus        75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~  139 (392)
T 1t11_A           75 QRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD  139 (392)
T ss_dssp             HHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred             HHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence            99999999999999999 999862      3578899999999999973      46666666666666654

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.91  E-value=7.7e-25  Score=207.95  Aligned_cols=129  Identities=24%  Similarity=0.367  Sum_probs=116.9

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+++++++++++++|+|+||+++++.+++++|++++++++ ||||||  |    |||++||+++||+ .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~   72 (432)
T 1w26_A            1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (432)
T ss_dssp             CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCC
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSS  239 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~------~E~~e~~~~~~~~~~~  239 (249)
                      .+|.+|+++++|+|++ +|.++.      ..+++|++|+|+++|+|+|      +.+.+.+....+.++.
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde  135 (432)
T 1w26_A           73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA  135 (432)
T ss_dssp             HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred             HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence            9999999999999999 999862      3578899999999999974      4566666666665554

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=99.81  E-value=1.2e-20  Score=179.33  Aligned_cols=109  Identities=17%  Similarity=0.311  Sum_probs=95.7

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |++++++.+++.+.|+|+||+++++.+++++|++++++++ ||||||  |    |||++||+++||+ .++.++++.+++
T Consensus         1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~   72 (433)
T 3gty_X            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (433)
T ss_dssp             CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999999 599999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      .++ .++.++  +|++ +|.++.      ..+ .|++|+|+++|+|+|
T Consensus        73 ~~~-~~~~~e--~~~~-~P~i~~------~~~-~~~~~~f~~~vev~P  109 (433)
T 3gty_X           73 LIP-DTLKDR--KLIL-SPIVTE------REL-KDVTARVVVEVHEEP  109 (433)
T ss_dssp             TST-TTSSSS--CBSS-CCEEEE------EEE-CSSCEEEEEEEEBCC
T ss_pred             HHH-HHHHhc--CCCC-CCCcCc------ccc-cCCCEEEEEEEEecC
Confidence            987 455555  7899 998862      234 366899999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	99.96
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	99.94

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.1e-28  Score=194.01  Aligned_cols=113  Identities=24%  Similarity=0.386  Sum_probs=108.6

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+|+++++++++++|+|+|++++++..++++|++++++++ ||||||  |    |||+++|+++||+ +|++++++++|+
T Consensus         1 M~v~v~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yg~-~i~~e~~~~li~   72 (117)
T d1p9ya_           1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (117)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEecCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCC-CCCcCC--C----CccHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999998 599999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      ..|.+|+++++|+|++ +|.++      ...+++|++|+|+++|+++|
T Consensus        73 ~~~~~al~e~~l~~~~-~P~i~------~~~~~~~~~~~f~~~~ev~P  113 (117)
T d1p9ya_          73 RNFIDAIIKEKINPAG-APTYV------PGEYKLGEDFTYSVEFEVYP  113 (117)
T ss_dssp             HHHHHHHHHTTCCCEE-EEEEE------ECCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHhcccCccC-CCccc------cccccCCCCEEEEEEEEeCC
Confidence            9999999999999999 99987      35688999999999999984

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.94  E-value=3.5e-26  Score=183.64  Aligned_cols=113  Identities=21%  Similarity=0.368  Sum_probs=108.5

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721           96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  175 (249)
Q Consensus        96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~  175 (249)
                      |+++++++++++++|+|+|++++++..+++++++++++++ ||||||  |    |||+.+|+++||. +|+.++++++++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~ii~k~~~~-~i~~e~~~~~i~   72 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVMQ   72 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhh-hHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721          176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  223 (249)
Q Consensus       176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~  223 (249)
                      .+|.+|+++++|.|++ +|.++      ...++++++|.|++.|++++
T Consensus        73 ~~~~~~l~e~~i~~~~-~p~i~------~~~~~~~~~~~~~~~~ev~P  113 (129)
T d1t11a2          73 RHFIEAIVKEKINPAG-APTFA------PVEIGEGKDLVFTATFEVYP  113 (129)
T ss_dssp             HHHHHHHHHTTCCBSS-CCEEE------EEECCTTSCEEEEEEEEBCC
T ss_pred             HHHHHHHHhcccCccc-CCCcC------cccccCCCcEEEEEEEEEcC
Confidence            9999999999999999 99987      35688999999999999973