Citrus Sinensis ID: 025737

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
ccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccEEEEEEEEEEccHHHHcccccccccccccccEEEEEcccccccccccEEEEEEccccEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcc
cccccccccccccccccEEEcccccccccHHHHcccEEEEEcccccHccccccccEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEEcccccccccccccccccccccccEEEEEcccccccccEEEEEEccccEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHccccHHHcccccccccccccHHHHHHHccccHHHHHcccccccccccccEEcccHHHHHHHHHHHHHHHcc
mptlpielgsdeRSGMLMMMrgmtakdfdpvrysgrwFEVAslkrgfagqgqedchctqgvytfdkekpaiqVDTFcvhggpdgyitgirgnvqclpeeeleKNVTDLEKQEMIkgkcylrfptlpfipkepydviatdydnfalvsgakdksfiqiysrtptpgpefIEKYKSYLAnfgydpnkikdtpqdcevISNSQLAAMMSMSGMQQALtnqfpdlelksplalnpfTSVLDTLKKLLELYFKK
mptlpielgsderSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRgfagqgqedCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVsgakdksfiqiysrtptpgpefIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
MPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNsqlaammsmsgmqqalTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
***********************TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIK*****C*V*************************LELKSPLALNPFTSVLDTLKKLLELYF**
*PTL*****************GMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCE****************************LKSPLALNPFTSVLDTLKKLLELYFK*
MPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
*****IEL**DERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEE***NVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPTLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLELYFKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
P51910189 Apolipoprotein D OS=Mus m yes no 0.570 0.751 0.279 3e-09
P05090189 Apolipoprotein D OS=Homo yes no 0.594 0.783 0.284 3e-07
Q8SPI0189 Apolipoprotein D OS=Macac N/A no 0.389 0.513 0.330 8e-06
P51909189 Apolipoprotein D OS=Cavia yes no 0.389 0.513 0.314 2e-05
Q32KY0189 Apolipoprotein D OS=Bos t yes no 0.570 0.751 0.267 2e-05
P37153189 Apolipoprotein D OS=Oryct yes no 0.570 0.751 0.267 0.0002
P23593189 Apolipoprotein D OS=Rattu yes no 0.570 0.751 0.255 0.0002
>sp|P51910|APOD_MOUSE Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1 Back     alignment and function desciption
 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 30/172 (17%)

Query: 26  KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 85
           ++FD  +Y GRW+E+  +   F     E  +C Q  Y+  +      ++       PDG 
Sbjct: 35  ENFDVKKYLGRWYEIEKIPASF-----EKGNCIQANYSLMENG---NIEVLNKELSPDGT 86

Query: 86  ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFAL 145
           +  ++G       E  + NV++  K E       ++F   P +P  PY ++ATDY+N+AL
Sbjct: 87  MNQVKG-------EAKQSNVSEPAKLE-------VQF--FPLMPPAPYWILATDYENYAL 130

Query: 146 VSGAK------DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 191
           V             F+ I  R P   PE I   K  L + G D  K+  T Q
Sbjct: 131 VYSCTTFFWLFHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQ 182
APOD occurs in the macromolecular complex with lecithin-transport and binding of bilin. Appears to be able to transport a variety of ligands in a number of different contexts.
Mus musculus (taxid: 10090)
>sp|P05090|APOD_HUMAN Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1 Back     alignment and function description
>sp|Q8SPI0|APOD_MACFA Apolipoprotein D OS=Macaca fascicularis GN=APOD PE=2 SV=1 Back     alignment and function description
>sp|P51909|APOD_CAVPO Apolipoprotein D OS=Cavia porcellus GN=APOD PE=2 SV=1 Back     alignment and function description
>sp|Q32KY0|APOD_BOVIN Apolipoprotein D OS=Bos taurus GN=APOD PE=2 SV=1 Back     alignment and function description
>sp|P37153|APOD_RABIT Apolipoprotein D OS=Oryctolagus cuniculus GN=APOD PE=2 SV=1 Back     alignment and function description
>sp|P23593|APOD_RAT Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
297735981347 unnamed protein product [Vitis vinifera] 0.987 0.708 0.882 1e-128
359494023 730 PREDICTED: F-box protein At3g62230-like 0.987 0.336 0.882 1e-127
255563999341 protein with unknown function [Ricinus c 0.987 0.721 0.861 1e-125
356553331330 PREDICTED: uncharacterized protein LOC10 0.959 0.724 0.870 1e-123
356501503329 PREDICTED: uncharacterized protein LOC10 0.959 0.726 0.870 1e-123
77744917329 chloroplast lipocalin [Glycine max] 0.959 0.726 0.866 1e-122
449468480330 PREDICTED: uncharacterized protein LOC10 0.939 0.709 0.880 1e-121
77744913333 chloroplast lipocalin [Solanum tuberosum 0.987 0.738 0.834 1e-121
255635556330 unknown [Glycine max] 0.959 0.724 0.853 1e-120
77744911334 chloroplast lipocalin [Ipomoea nil] 0.991 0.739 0.838 1e-118
>gi|297735981|emb|CBI23955.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/246 (88%), Positives = 230/246 (93%)

Query: 3   TLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY 62
           TLP++ GS ERSG LMMMRGM+AKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY
Sbjct: 102 TLPLDEGSGERSGKLMMMRGMSAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY 161

Query: 63  TFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRF 122
           TFD E PAIQVDTFCVHGGPDGYITGIRG VQCL EEELEK+ TDLEKQ MI+ KCYLRF
Sbjct: 162 TFDMESPAIQVDTFCVHGGPDGYITGIRGKVQCLEEEELEKSATDLEKQVMIREKCYLRF 221

Query: 123 PTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYD 182
           PTLPFIPKEPYDVIATDYD FALVSGAKD+SFIQIYSRTP PGP+FIEKYK+YLANFGYD
Sbjct: 222 PTLPFIPKEPYDVIATDYDTFALVSGAKDRSFIQIYSRTPNPGPKFIEKYKAYLANFGYD 281

Query: 183 PNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKL 242
           P+KIKDTPQDCEV+SNS+LAAMMSMSGMQQALTNQFPDL LKSP+  NPFTSV DTLKKL
Sbjct: 282 PSKIKDTPQDCEVMSNSKLAAMMSMSGMQQALTNQFPDLGLKSPIEFNPFTSVFDTLKKL 341

Query: 243 LELYFK 248
           +ELYFK
Sbjct: 342 VELYFK 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359494023|ref|XP_002281469.2| PREDICTED: F-box protein At3g62230-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563999|ref|XP_002522999.1| protein with unknown function [Ricinus communis] gi|223537811|gb|EEF39429.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356553331|ref|XP_003545010.1| PREDICTED: uncharacterized protein LOC100814557 [Glycine max] Back     alignment and taxonomy information
>gi|356501503|ref|XP_003519564.1| PREDICTED: uncharacterized protein LOC100787880 [Glycine max] Back     alignment and taxonomy information
>gi|77744917|gb|ABB02412.1| chloroplast lipocalin [Glycine max] Back     alignment and taxonomy information
>gi|449468480|ref|XP_004151949.1| PREDICTED: uncharacterized protein LOC101212269 [Cucumis sativus] gi|449489988|ref|XP_004158477.1| PREDICTED: uncharacterized LOC101212269 [Cucumis sativus] Back     alignment and taxonomy information
>gi|77744913|gb|ABB02410.1| chloroplast lipocalin [Solanum tuberosum] Back     alignment and taxonomy information
>gi|255635556|gb|ACU18128.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|77744911|gb|ABB02409.1| chloroplast lipocalin [Ipomoea nil] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
TAIR|locus:2100407353 CHL "chloroplastic lipocalin" 0.975 0.688 0.727 1.8e-96
UNIPROTKB|Q5G8Y9189 ApoD "Apolipoprotein D" [Gallu 0.269 0.354 0.351 3.6e-07
UNIPROTKB|P05090189 APOD "Apolipoprotein D" [Homo 0.285 0.375 0.333 4.4e-06
UNIPROTKB|G3QHM6200 APOD "Uncharacterized protein" 0.285 0.355 0.333 4.5e-06
ZFIN|ZDB-GENE-070912-551189 si:dkey-52k20.7 "si:dkey-52k20 0.285 0.375 0.311 7.8e-06
TAIR|locus:2155831186 TIL "temperature-induced lipoc 0.594 0.795 0.297 1.8e-05
UNIPROTKB|C9JF17215 APOD "Apolipoprotein D" [Homo 0.269 0.311 0.337 2.3e-05
MGI|MGI:88056189 Apod "apolipoprotein D" [Mus m 0.413 0.544 0.315 0.00022
UNIPROTKB|F7FST1189 LOC709223 "Apolipoprotein D" [ 0.285 0.375 0.307 0.00033
UNIPROTKB|Q8SPI0189 APOD "Apolipoprotein D" [Macac 0.285 0.375 0.307 0.00033
TAIR|locus:2100407 CHL "chloroplastic lipocalin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 179/246 (72%), Positives = 201/246 (81%)

Query:     3 TLPIELGSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY 62
             TLP +   D  S M+MMMRGMTAK+FDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY
Sbjct:   111 TLPSD--GDSESMMMMMMRGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVY 168

Query:    63 TFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRF 122
             TFD ++ AI+VDTFCVHG PDGYITGIRG VQC+  E+LEK+ TDLEKQEMIK KC+LRF
Sbjct:   169 TFDMKESAIRVDTFCVHGSPDGYITGIRGKVQCVGAEDLEKSETDLEKQEMIKEKCFLRF 228

Query:   123 PTLPFIPKEPYDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYD 182
             PT+PFIPK PYDVIATDYDN+ALVSGAKDK F+Q+YSRTP PGPEFI KYK+YLA FGYD
Sbjct:   229 PTIPFIPKLPYDVIATDYDNYALVSGAKDKGFVQVYSRTPNPGPEFIAKYKNYLAQFGYD 288

Query:   183 PNKIKDTPQDCEVISNXXXXXXXXXXXXXXXXTNQFPDLELKSPLALNPFTSVLDTLKKL 242
             P KIKDTPQDCEV ++                TNQFPDL L+  +  +PFTSV +TLKKL
Sbjct:   289 PEKIKDTPQDCEV-TDAELAAMMSMPGMEQTLTNQFPDLGLRKSVQFDPFTSVFETLKKL 347

Query:   243 LELYFK 248
             + LYFK
Sbjct:   348 VPLYFK 353
GO:0005576 "extracellular region" evidence=ISM
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0031977 "thylakoid lumen" evidence=IDA
UNIPROTKB|Q5G8Y9 ApoD "Apolipoprotein D" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P05090 APOD "Apolipoprotein D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3QHM6 APOD "Uncharacterized protein" [Gorilla gorilla gorilla (taxid:9595)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-551 si:dkey-52k20.7 "si:dkey-52k20.7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2155831 TIL "temperature-induced lipocalin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JF17 APOD "Apolipoprotein D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:88056 Apod "apolipoprotein D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F7FST1 LOC709223 "Apolipoprotein D" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q8SPI0 APOD "Apolipoprotein D" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
COG3040174 COG3040, Blc, Bacterial lipocalin [Cell envelope b 1e-07
pfam08212140 pfam08212, Lipocalin_2, Lipocalin-like domain 2e-07
pfam00061140 pfam00061, Lipocalin, Lipocalin / cytosolic fatty- 5e-07
>gnl|CDD|225582 COG3040, Blc, Bacterial lipocalin [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 45/180 (25%)

Query: 24  TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPD 83
              +FD  RY G+W+EVA L   F    ++ C      Y+  ++   I V   C  G   
Sbjct: 27  PVNNFDLQRYLGKWYEVARLPMRF----EKGCVQVTATYSL-RDDGGISVINRCRTGDG- 80

Query: 84  GYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYL-----------RFPTLPFIPKEP 132
                                     K   I+GK  +            F   PF     
Sbjct: 81  -------------------------GKWSQIEGKAKIVDNATRAKLKVSFF-GPFYGD-- 112

Query: 133 YDVIATDYDNFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 192
           Y V+A D +    + G+ D+ ++ + SRTPT   E +++        G+D +K+    Q 
Sbjct: 113 YWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLIFVQQP 172

Length = 174
>gnl|CDD|116798 pfam08212, Lipocalin_2, Lipocalin-like domain Back     alignment and domain information
>gnl|CDD|215686 pfam00061, Lipocalin, Lipocalin / cytosolic fatty-acid binding protein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
KOG4824224 consensus Apolipoprotein D/Lipocalin [Cell wall/me 100.0
PF08212143 Lipocalin_2: Lipocalin-like domain; InterPro: IPR0 100.0
COG3040174 Blc Bacterial lipocalin [Cell envelope biogenesis, 100.0
PRK10477177 outer membrane lipoprotein Blc; Provisional 100.0
PF00061144 Lipocalin: Lipocalin / cytosolic fatty-acid bindin 99.72
PF07137198 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IP 99.03
PF03973148 Triabin: Triabin; InterPro: IPR005657 This family 99.03
PF02087178 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitr 98.72
PLN02372455 violaxanthin de-epoxidase 98.53
PF11032186 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 97.74
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-43  Score=295.77  Aligned_cols=188  Identities=41%  Similarity=0.639  Sum_probs=162.0

Q ss_pred             CCCCCcccCCCCCCCCccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEe
Q 025737            9 GSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITG   88 (249)
Q Consensus         9 ~~~~~~~~~~C~~~~~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~   88 (249)
                      ..+++.+.+.||+.+++++||++||+|+|||||++|..||.+    ..|++..|++...+|.|+|.|.|++ ++||++..
T Consensus        23 a~gqa~~lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~----~gctt~~y~~~nkngkI~Vln~~v~-r~dG~~n~   97 (224)
T KOG4824|consen   23 AAGQAIALGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGK----GGCTTGAYTFDNKNGKIHVLNECVH-RPDGKINF   97 (224)
T ss_pred             cccceEeeccCCCCccccCCChhhhcceeeeeeccccccccC----CCceeeeeEecCCCceEEEeeeeee-cCCCccce
Confidence            446678999999999999999999999999999999999854    2499999999877999999999998 58999999


Q ss_pred             eeeEEEEcCchhhhhhhhhhhhhhcccceEEEecCC-------CCCCCCCCeEEEEEcCCCEEEEEecC------CCcEE
Q 025737           89 IRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPT-------LPFIPKEPYDVIATDYDNFALVSGAK------DKSFI  155 (249)
Q Consensus        89 i~G~a~~~~~~~~~~~~~~~~~q~~~~gkl~v~f~~-------~pf~~~~~Y~Vl~TDYd~YAIV~sc~------~~~~l  155 (249)
                      |+|.|+++++..             ....+++++..       .+|  ...|||+.|||++||++|+|-      +++++
T Consensus        98 ieG~atpvn~~s-------------~k~e~kf~~~~p~~~~~~l~~--~~iy~Vl~tdyenya~~ysc~alisl~h~df~  162 (224)
T KOG4824|consen   98 IEGKATPVNEDS-------------DKAELKFEFQEPIFEKCFLRF--PPIYFVLGTDYENYADDYSCHALISLKHKDFL  162 (224)
T ss_pred             eeeeeeecCCch-------------hhhcceeEEecCchHhhccCC--CCCcceecccHhheeccccccceeccCCCceE
Confidence            999999998532             12333443321       222  568999999999999999884      56899


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC-CCCcCChHHHHHHhcccchhhHhhcc
Q 025737          156 QIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVISNSQLAAMMSMSGMQQALTNQ  217 (249)
Q Consensus       156 WILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q-~C~~~~~~~l~~~~~~~~~~~~~~~~  217 (249)
                      |||||+|++.++.+++++++|.+.|||+++|+.|+| +|+..+ ..++|||+||||.+.|+++
T Consensus       163 wIlsRtpn~epEt~~klkn~l~~~gyDpeKl~~Tpq~dcp~~s-~~~~~~~~~~~~~~sl~~~  224 (224)
T KOG4824|consen  163 WILSRTPNMEPETIAKLKNKLAEEGYDPEKLHDTPQSDCPPES-AEAAADMKGPGMEKSLFGK  224 (224)
T ss_pred             EEEecCCCCChHHHHHHHHHHHHcCCCHHHhccCCccCCChhh-hhhHHhccCcchhhhhccC
Confidence            999999999999999999999999999999999999 699855 5788899999999999874

>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ] Back     alignment and domain information
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10477 outer membrane lipoprotein Blc; Provisional Back     alignment and domain information
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ] Back     alignment and domain information
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE) Back     alignment and domain information
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation [] Back     alignment and domain information
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ] Back     alignment and domain information
>PLN02372 violaxanthin de-epoxidase Back     alignment and domain information
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
2hzq_A174 Crystal Structure Of Human Apolipoprotein D (Apod) 2e-07
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In Complex With Progesterone Length = 174 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 26  KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 85
           ++FD  +Y GRW+E+  +   F     E+  C Q  Y+  +     ++         DG 
Sbjct: 13  ENFDVNKYPGRWYEIEKIPTTF-----ENGRCIQANYSLXENG---KIKVLNQELRADGT 64
Query: 86  ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFAL 145
           +  I G       E    N+T+  K E+       +F    F P  PY ++ATDY+N+AL
Sbjct: 65  VNQIEG-------EATPVNLTEPAKLEV-------KFSW--FXPSAPYHILATDYENYAL 108
Query: 146 VSGAKDKS------FIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVIS 197
           V      S      F  I +R     PE ++  K+ L +   D  K   T Q +C  +S
Sbjct: 109 VYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKXTVTDQVNCPKLS 167

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
2hzq_A174 Apolipoprotein D, APO-D, APOD; lipocalin, beta bar 1e-32
1gka_B174 Crustacyanin A2 subunit; lipocalin, lobster, astax 1e-26
1kxo_A184 DIGA16; lipocalin, anticalin, genetical engineerin 5e-26
1z24_A189 Insecticyanin A form; blue biliprotein, INS-A, chr 5e-26
1i4u_A181 Crustacyanin; lipocalin fold, antiparallel beta ba 3e-25
3ebw_A163 PER A 4 allergen; beta barrel, cockroach; HET: PE4 3e-25
3fmz_A212 Retinol-binding protein 4; disease mutation, secre 1e-23
1kt6_A183 RBP, plasma retinol-binding protein; transport pro 2e-23
1qwd_A177 Outer membrane lipoprotein BLC; bacterial lipocali 5e-22
1epa_A164 Epididymal retinoic acid-binding protein; 2.10A {R 7e-22
2xst_A161 Lipocalin 15; transport protein, LCN15, MSFL2541; 1e-18
3o22_A162 Prostaglandin-H2 D-isomerase; lipocalin, prostagla 3e-15
2a2u_A181 Protein (alpha-2U-globulin); lipid binding protein 8e-15
3bx8_A178 Engineered human lipocalin 2; protein design, liga 8e-15
1lf7_A182 Complement protein C8gamma; lipocalin, beta barrel 1e-14
3s26_A190 Neutrophil gelatinase-associated lipocalin; beta-b 3e-14
3sao_A160 Extracellular fatty acid-binding protein; beta-bar 1e-13
3qkg_A193 Protein AMBP; beta barrel, binding protein, bound 1e-12
3cbc_A198 Neutrophil gelatinase-associated lipocalin; sidero 1e-12
1ew3_A159 Allergen EQU C 1; lipocalin, beta barrel; 2.30A {E 1e-12
1gm6_A175 SAL, salivary lipocalin; odorant-binding protein; 4e-12
3kff_A162 MUP 4, major urinary protein 4; pheromone, lipocal 5e-12
2l5p_A184 Lipocalin 12; beta barrel, transport protein; NMR 4e-11
1exs_A160 Beta-lactoglobulin; lipocalin fold, lipid-binding 2e-09
3l4r_A170 Allergen DOG 2, minor allergen CAN F 2; lipocalin 3e-07
3cqn_A185 Violaxanthin DE-epoxidase, chloroplast; lipocalin, 3e-07
1beb_A162 Beta-lactoglobulin; lipocalin, MILK WHEY protein, 1e-06
1dzk_A157 PIG OBP, odorant-binding protein; lipocalin, trans 3e-06
1xki_A162 VON ebner'S gland protein; beta barrel, ligand bin 5e-06
2hlv_A160 Odorant-binding protein; domain swapping, transpor 6e-06
1bj7_A156 D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: 1e-05
2ra6_A166 Trichosurin; lipocalin, beta barrel, glycoprotein, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3fiq_A157 OBP1, RCG36470, odorant-binding protein 1F; lipoca 4e-05
1e5p_A151 Aphrodisin; lipocalin, pheromone, hamster,; HET: M 8e-04
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A Length = 174 Back     alignment and structure
 Score =  116 bits (291), Expect = 1e-32
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 31/184 (16%)

Query: 24  TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPD 83
             ++FD  +Y GRW+E+  +         E+  C Q  Y+  +    I+V    +    D
Sbjct: 11  VQENFDVNKYPGRWYEIEKIP-----TTFENGRCIQANYSLMEN-GKIKVLNQELR--AD 62

Query: 84  GYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNF 143
           G +  I G    +   E                K  ++F    F+P  PY ++ATDY+N+
Sbjct: 63  GTVNQIEGEATPVNLTE--------------PAKLEVKFS--WFMPSAPYHILATDYENY 106

Query: 144 ALV------SGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVI 196
           ALV      S +    F  I +R     PE ++  K+ L +   D  K+  T Q +C  +
Sbjct: 107 ALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 166

Query: 197 SNSQ 200
           S   
Sbjct: 167 SAHH 170
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1 Length = 174 Back     alignment and structure
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A* Length = 184 Back     alignment and structure
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1 Length = 189 Back     alignment and structure
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A Length = 181 Back     alignment and structure
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana} Length = 163 Back     alignment and structure
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory transduction, transport, vision, vitamin A, transport protein; HET: 2T1; 2.90A {Homo sapiens} Length = 212 Back     alignment and structure
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ... Length = 183 Back     alignment and structure
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A Length = 177 Back     alignment and structure
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A* Length = 164 Back     alignment and structure
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens} Length = 161 Back     alignment and structure
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A* Length = 162 Back     alignment and structure
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A Length = 181 Back     alignment and structure
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A* Length = 178 Back     alignment and structure
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C Length = 182 Back     alignment and structure
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 2k23_A Length = 190 Back     alignment and structure
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} PDB: 1jzu_A 2kt4_B* 2lbv_A* Length = 160 Back     alignment and structure
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens} Length = 193 Back     alignment and structure
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A* Length = 198 Back     alignment and structure
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1 Length = 159 Back     alignment and structure
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1 Length = 175 Back     alignment and structure
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ... Length = 162 Back     alignment and structure
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus} Length = 184 Back     alignment and structure
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1 Length = 160 Back     alignment and structure
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris} Length = 170 Back     alignment and structure
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A Length = 185 Back     alignment and structure
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ... Length = 162 Back     alignment and structure
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A Length = 157 Back     alignment and structure
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A Length = 162 Back     alignment and structure
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A* Length = 160 Back     alignment and structure
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1 Length = 156 Back     alignment and structure
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} Length = 157 Back     alignment and structure
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1 Length = 151 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
3ebw_A163 PER A 4 allergen; beta barrel, cockroach; HET: PE4 100.0
2hzq_A174 Apolipoprotein D, APO-D, APOD; lipocalin, beta bar 100.0
1qwd_A177 Outer membrane lipoprotein BLC; bacterial lipocali 100.0
1z24_A189 Insecticyanin A form; blue biliprotein, INS-A, chr 100.0
1gka_B174 Crustacyanin A2 subunit; lipocalin, lobster, astax 100.0
1kxo_A184 DIGA16; lipocalin, anticalin, genetical engineerin 100.0
3fmz_A212 Retinol-binding protein 4; disease mutation, secre 100.0
1i4u_A181 Crustacyanin; lipocalin fold, antiparallel beta ba 100.0
1kt6_A183 RBP, plasma retinol-binding protein; transport pro 100.0
2xst_A161 Lipocalin 15; transport protein, LCN15, MSFL2541; 100.0
3bx8_A178 Engineered human lipocalin 2; protein design, liga 99.98
3s26_A190 Neutrophil gelatinase-associated lipocalin; beta-b 99.97
2l5p_A184 Lipocalin 12; beta barrel, transport protein; NMR 99.97
3cbc_A198 Neutrophil gelatinase-associated lipocalin; sidero 99.97
1gm6_A175 SAL, salivary lipocalin; odorant-binding protein; 99.97
1lf7_A182 Complement protein C8gamma; lipocalin, beta barrel 99.97
1ew3_A159 Allergen EQU C 1; lipocalin, beta barrel; 2.30A {E 99.97
2a2u_A181 Protein (alpha-2U-globulin); lipid binding protein 99.97
1beb_A162 Beta-lactoglobulin; lipocalin, MILK WHEY protein, 99.96
2ra6_A166 Trichosurin; lipocalin, beta barrel, glycoprotein, 99.96
1xki_A162 VON ebner'S gland protein; beta barrel, ligand bin 99.96
3o22_A162 Prostaglandin-H2 D-isomerase; lipocalin, prostagla 99.96
1exs_A160 Beta-lactoglobulin; lipocalin fold, lipid-binding 99.96
1bj7_A156 D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: 99.96
1epa_A164 Epididymal retinoic acid-binding protein; 2.10A {R 99.96
1dzk_A157 PIG OBP, odorant-binding protein; lipocalin, trans 99.96
2hlv_A160 Odorant-binding protein; domain swapping, transpor 99.96
1e5p_A151 Aphrodisin; lipocalin, pheromone, hamster,; HET: M 99.95
3qkg_A193 Protein AMBP; beta barrel, binding protein, bound 99.94
3kff_A162 MUP 4, major urinary protein 4; pheromone, lipocal 99.94
3sao_A160 Extracellular fatty acid-binding protein; beta-bar 99.93
3l4r_A170 Allergen DOG 2, minor allergen CAN F 2; lipocalin 99.91
1pm1_X180 Nitrophorin 2, NP2, prolixin-S; beta barrel, lipoc 99.91
3ebk_A176 Allergen BLA G 4; beta barrel, cockroach, glycopro 99.9
1x8p_A184 Nitrophorin 4, NP4; lipocalin, beta barrel, ferric 99.89
4ge1_A197 Biogenic amine-binding protein; lipocalin binding 99.85
1avg_I142 Triabin; bovine thrombin, thrombin inhibitor, comp 99.84
3kq0_A192 Alpha-1-acid glycoprotein 1; plasma protein, polym 99.81
3fiq_A157 OBP1, RCG36470, odorant-binding protein 1F; lipoca 99.7
3cqn_A185 Violaxanthin DE-epoxidase, chloroplast; lipocalin, 99.58
3bx6_A192 Alpha-1-acid glycoprotein; plasma protein, acute p 99.25
2yg2_A172 Apolipoprotein M; lipid transport, lipocalin, HDL; 97.36
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana} Back     alignment and structure
Probab=100.00  E-value=6.4e-41  Score=278.15  Aligned_cols=152  Identities=20%  Similarity=0.309  Sum_probs=134.4

Q ss_pred             CCCCCCCCccCCCccCcccceEEEEeecCcccCCCCCCc-eeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEE-eeeeEEE
Q 025737           17 LMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDC-HCTQGVYTFDKEKPAIQVDTFCVHGGPDGYIT-GIRGNVQ   94 (249)
Q Consensus        17 ~~C~~~~~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~-~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~-~i~G~a~   94 (249)
                      ++||.++++++||++||+|+||||||+|+.||    ++| .|++++|++.+ +|+|.|.|+| +   +|.+. .+.|+|+
T Consensus         2 ~~Cp~v~~~~~fdl~ry~G~WYeiar~~~~fe----~~~~~~~~a~Y~l~~-dg~i~V~n~~-~---~g~~~~~~~G~a~   72 (163)
T 3ebw_A            2 DSCQIGTSFTGLDMTKYVGTWYELFRTPNSDE----EDFTNCEYDKYTLDE-NGVIQVTSVA-Y---TNSIRGFITSTGT   72 (163)
T ss_dssp             CSCCCCCCCCCCCTTTTCEEEEEEEECCCSTT----SSCCSCEEEEEEECT-TSCEEEEEEE-E---CSTTSSEEEEEEE
T ss_pred             CCCcCCCccCCCChHHhCEEeEEEEEeCcccc----cCcCccceEEEEECC-CCeEEEEEEe-e---CCeEEEEEEEEEE
Confidence            68999999999999999999999999999996    688 99999999997 8999999999 4   47777 8999999


Q ss_pred             EcCchhhhhhhhhhhhhhcccceEEEecC-CCCCCCCCCeEEEEEcCCCEEEEEecC----CCcEEEEEeCCCCCCHHHH
Q 025737           95 CLPEEELEKNVTDLEKQEMIKGKCYLRFP-TLPFIPKEPYDVIATDYDNFALVSGAK----DKSFIQIYSRTPTPGPEFI  169 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~q~~~~gkl~v~f~-~~pf~~~~~Y~Vl~TDYd~YAIV~sc~----~~~~lWILSRtp~ls~~~l  169 (249)
                      .+++.              .+| |+|+|. .+|+  .++||||+|||++||||++|.    +.+++|||||+|+++++++
T Consensus        73 ~~~~~--------------~~~-l~v~f~~~~~~--~~~y~Vl~tDY~~Ya~v~~c~~~~~~~~~~wilsR~~~l~~~~~  135 (163)
T 3ebw_A           73 VPSWT--------------EDT-FDIAYGDDETW--SSTYFMVGTDYQTYSIVAGCLDNDYSRHLYWIASHETSFDDATK  135 (163)
T ss_dssp             CCCBC--------------SSE-EEEBC--------CEEEEEEEECSSSCEEEEEEETTEEEEEEEEEEESSSSCCHHHH
T ss_pred             eCCCC--------------CCc-eEEEeccCCCc--cccEEEEEeCCCCEEEEEEecCCCccceEEEEEeCCCCCCHHHH
Confidence            87643              468 999995 3455  689999999999999999873    3578999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCcEEcCCC-CC
Q 025737          170 EKYKSYLANFGYDPNKIKDTPQD-CE  194 (249)
Q Consensus       170 ~~~~~~l~~~G~d~s~l~~t~Q~-C~  194 (249)
                      ++++++++++||+.++|++++|+ |+
T Consensus       136 ~~~~~~~~~~G~~~~~l~~~~q~~C~  161 (163)
T 3ebw_A          136 AKVNEVLAPYNLSLDDMEPVDQSYCV  161 (163)
T ss_dssp             HHHHHHHGGGTCCGGGSEECCCCTTT
T ss_pred             HHHHHHHHHcCCCHHHeEECCCCCCC
Confidence            99999999999999999999996 86
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A Back     alignment and structure
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A Back     alignment and structure
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1 Back     alignment and structure
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1 Back     alignment and structure
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A* Back     alignment and structure
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory transduction, transport, vision, vitamin A, transport protein; HET: 2T1; 2.90A {Homo sapiens} Back     alignment and structure
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A Back     alignment and structure
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ... Back     alignment and structure
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens} Back     alignment and structure
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A* Back     alignment and structure
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A Back     alignment and structure
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A* Back     alignment and structure
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1 Back     alignment and structure
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C Back     alignment and structure
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1 Back     alignment and structure
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A Back     alignment and structure
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ... Back     alignment and structure
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A Back     alignment and structure
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A Back     alignment and structure
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A* Back     alignment and structure
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1 Back     alignment and structure
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1 Back     alignment and structure
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A* Back     alignment and structure
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A Back     alignment and structure
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A* Back     alignment and structure
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1 Back     alignment and structure
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens} Back     alignment and structure
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ... Back     alignment and structure
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A* Back     alignment and structure
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris} Back     alignment and structure
>1pm1_X Nitrophorin 2, NP2, prolixin-S; beta barrel, lipocalin, imidazole, ferric heme, blood clotting inhibitor; HET: HEM; 1.10A {Rhodnius prolixus} SCOP: b.60.1.1 PDB: 2all_X* 2amm_X* 2hys_A* 1euo_A* 1pee_A* 1t68_X* 2acp_X* 2ah7_X* 2al0_X* 2gtf_X* 2a3f_X* 2eu7_X* 2asn_X* Back     alignment and structure
>3ebk_A Allergen BLA G 4; beta barrel, cockroach, glycoprotein, secreted; 1.90A {Blattella germanica} Back     alignment and structure
>1x8p_A Nitrophorin 4, NP4; lipocalin, beta barrel, ferric heme, ligand binding protein; HET: HEM; 0.85A {Rhodnius prolixus} SCOP: b.60.1.1 PDB: 1d3s_A* 1eqd_A* 1erx_A* 1ike_A* 1ikj_A* 1d2u_A* 1ml7_A* 1np4_A* 1u0x_A* 1x8n_A* 1koi_A* 1x8o_A* 1x8q_A* 1ywa_A* 1ywb_A* 1ywc_A* 1ywd_A* 2at4_X* 2at5_X* 2at6_X* ... Back     alignment and structure
>4ge1_A Biogenic amine-binding protein; lipocalin binding protein, serotonin, norepinephrine, saliva amine-binding protein; HET: TSS; 2.15A {Rhodnius prolixus} PDB: 4get_A* 4hfo_A Back     alignment and structure
>1avg_I Triabin; bovine thrombin, thrombin inhibitor, complex (blood coagulation/inhibitor); 2.60A {Triatoma pallidipennis} SCOP: b.60.1.3 Back     alignment and structure
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A* Back     alignment and structure
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0 Back     alignment and structure
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A Back     alignment and structure
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC; 1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 249
d1gkab_174 b.60.1.1 (B:) Alpha-crustacyanin {European lobster 2e-24
d1z24a1189 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm 4e-24
d1epba_160 b.60.1.1 (A:) Retinoic acid-binding protein {Rat ( 5e-24
d1qwda_167 b.60.1.1 (A:) Outer membrane lipoprotein Blc {Esch 7e-24
d1kt7a_175 b.60.1.1 (A:) Retinol binding protein {Cow (Bos ta 7e-24
d1kxoa_171 b.60.1.1 (A:) Bilin-binding protein {Cabbage butte 3e-23
d1lf7a_171 b.60.1.1 (A:) Complement protein C8gamma {Human (H 1e-22
d1i4ua_181 b.60.1.1 (A:) Alpha-crustacyanin {European lobster 3e-22
d1x71a1174 b.60.1.1 (A:4-177) Neutrophil gelatinase-associate 1e-19
d1ew3a_159 b.60.1.1 (A:) Lipocalin allergen {Horse (Equus cab 6e-17
d1beba_156 b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) 6e-16
d1pm1x_180 b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius 5e-15
d2a2ua_158 b.60.1.1 (A:) Major urinary protein/alpha-2u-globu 5e-15
d1gm6a_158 b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) 6e-15
d1jzua_157 b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturni 1e-14
d1znda1157 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u- 8e-14
d1exsa_160 b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) 2e-13
d1bj7a_150 b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus) 2e-10
d1avgi_142 b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug ( 5e-08
d1gt1a_158 b.60.1.1 (A:) Odorant-binding protein {Cow (Bos ta 2e-05
d1xkia_139 b.60.1.1 (A:) Von Ebner's gland protein (VEGP, tea 0.002
d1dzka_148 b.60.1.1 (A:) Odorant-binding protein {Pig (Sus sc 0.004
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Length = 174 Back     information, alignment and structure

class: All beta proteins
fold: Lipocalins
superfamily: Lipocalins
family: Retinol binding protein-like
domain: Alpha-crustacyanin
species: European lobster (Homarus gammarus) [TaxId: 6707]

 Score = 93.8 bits (232), Expect = 2e-24
 Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 28/174 (16%)

Query: 24  TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPD 83
              +FD  RY+GRW++   ++  +    Q    C    Y +       +V T      P+
Sbjct: 17  NQDNFDLRRYAGRWYQTHIIENAY----QPVTRCIHSNYEYSTNDYGFKVTTAGF--NPN 70

Query: 84  GYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNF 143
                I   V    E                           P +   PY+VI TDY+ +
Sbjct: 71  DEYLKIDFKVYPTKEFP-----------------AAHMLIDAPSVFAAPYEVIETDYETY 113

Query: 144 ALVSGAKDKS-----FIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 192
           + V            F  ++SRTP      +EK  +     G + +K       
Sbjct: 114 SCVYSCITTDNYKSEFAFVFSRTPQTSGPAVEKTAAVFNKNGVEFSKFVPVSHT 167
>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} Length = 189 Back     information, alignment and structure
>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160 Back     information, alignment and structure
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 175 Back     information, alignment and structure
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]} Length = 171 Back     information, alignment and structure
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Length = 181 Back     information, alignment and structure
>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus), equ c 1 [TaxId: 9796]} Length = 159 Back     information, alignment and structure
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]} Length = 156 Back     information, alignment and structure
>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [TaxId: 13249]} Length = 180 Back     information, alignment and structure
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 158 Back     information, alignment and structure
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823]} Length = 158 Back     information, alignment and structure
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]} Length = 157 Back     information, alignment and structure
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]} Length = 157 Back     information, alignment and structure
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823]} Length = 160 Back     information, alignment and structure
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2 [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]} Length = 142 Back     information, alignment and structure
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d1xkia_ b.60.1.1 (A:) Von Ebner's gland protein (VEGP, tear lipocalin) {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
d1i4ua_181 Alpha-crustacyanin {European lobster (Homarus gamm 100.0
d1gkab_174 Alpha-crustacyanin {European lobster (Homarus gamm 100.0
d1kxoa_171 Bilin-binding protein {Cabbage butterfly (Pieris b 100.0
d1z24a1189 Insecticyanin {Tobacco hornworm (Manduca sexta) [T 100.0
d1qwda_167 Outer membrane lipoprotein Blc {Escherichia coli [ 100.0
d1kt7a_175 Retinol binding protein {Cow (Bos taurus) [TaxId: 100.0
d1x71a1174 Neutrophil gelatinase-associated lipocalin (NGAL) 99.98
d1lf7a_171 Complement protein C8gamma {Human (Homo sapiens) [ 99.97
d1ew3a_159 Lipocalin allergen {Horse (Equus caballus), equ c 99.96
d1epba_160 Retinoic acid-binding protein {Rat (Rattus norvegi 99.96
d1beba_156 beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913] 99.95
d1gm6a_158 Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823] 99.95
d1exsa_160 beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823] 99.95
d1pm1x_180 Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [Tax 99.94
d1znda1157 Major urinary protein/alpha-2u-globulin {Mouse (Mu 99.94
d2a2ua_158 Major urinary protein/alpha-2u-globulin {Rat (Ratt 99.94
d1jzua_157 Lipocalin q83 {Common quail (Coturnix coturnix) [T 99.94
d1x8qa_184 Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]} 99.91
d1avgi_142 Thrombin inhibitor {Triatomine bug (Triatoma palli 99.9
d1bj7a_150 Lipocalin allergen {Cow (Bos taurus), bos d 2 [Tax 99.86
d1gt1a_158 Odorant-binding protein {Cow (Bos taurus) [TaxId: 99.81
d1xkia_139 Von Ebner's gland protein (VEGP, tear lipocalin) { 99.79
d1dzka_148 Odorant-binding protein {Pig (Sus scrofa) [TaxId: 99.6
d1e5pa_149 Aphrodisin, a sex pheromone {Golden hamster (Mesoc 99.54
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Back     information, alignment and structure
class: All beta proteins
fold: Lipocalins
superfamily: Lipocalins
family: Retinol binding protein-like
domain: Alpha-crustacyanin
species: European lobster (Homarus gammarus) [TaxId: 6707]

Probab=100.00  E-value=2e-37  Score=258.25  Aligned_cols=157  Identities=20%  Similarity=0.308  Sum_probs=135.3

Q ss_pred             ccCCCCCCCC-----ccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEee
Q 025737           15 GMLMMMRGMT-----AKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGI   89 (249)
Q Consensus        15 ~~~~C~~~~~-----v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i   89 (249)
                      .+|.||.+..     +++||++||+|+||||||+|+.||    +++.|++++|++.+ ++.+.+.+...   .+|....+
T Consensus         8 ~~g~C~~v~~~~~~~~~~fDl~~y~G~WYeia~~~~~~e----~~~~c~~~~yt~~~-~~~~~~~~~~~---~~G~~~~~   79 (181)
T d1i4ua_           8 VPGKCASVDRNKLWAEQTPNRNSYAGVWYQFALTNNPYQ----LIEKCVRNEYSFDG-KQFVIESTGIA---YDGNLLKR   79 (181)
T ss_dssp             EESCCCCCCHHHHHHHHGGGHHHHCEEEEEEEEECCSSC----CEEEEEEEEEEECS-SCEEEEEEEEE---TTSCEEEE
T ss_pred             EcccCCCCCccCCCcccCcCHHHhCEeeeEEEEeCCchh----cCceeeEEEEEecC-CcEEEEEEEEe---cCCCEEEE
Confidence            5689999885     889999999999999999999995    67999999999986 77776665543   57988899


Q ss_pred             eeEEEEcCchhhhhhhhhhhhhhcccceEEEecCCCCCCCCCCeEEEEEcCCCEEEEEecCC------CcEEEEEeCCCC
Q 025737           90 RGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKD------KSFIQIYSRTPT  163 (249)
Q Consensus        90 ~G~a~~~~~~~~~~~~~~~~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd~YAIV~sc~~------~~~lWILSRtp~  163 (249)
                      .|++...+.               .++++.++|+ .++  .++||||+|||++|||||+|..      .+++|||||+|+
T Consensus        80 ~g~a~~~~~---------------~~~kl~v~f~-~~~--~~~y~Vl~tDy~~Yavvy~c~~~~~~~~~~~~wIlsR~p~  141 (181)
T d1i4ua_          80 NGKLYPNPF---------------GEPHLSIDYE-NSF--AAPLVILETDYSNYACLYSCIDYNFGYHSDFSFIFSRSAN  141 (181)
T ss_dssp             EEEEEECTT---------------CCSSEEEEET-TSC--EEEEEEEEECSSSEEEEEEEEECTTSEEEEEEEEEESSSS
T ss_pred             EEEEEeCCC---------------CCceEEEEcc-Ccc--ccceEEEEEccCceeEEEEeeeccCCCceeEEEEEecCCC
Confidence            999987542               3579999996 333  6799999999999999999963      357999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCcEEcCCC--CCcCC
Q 025737          164 PGPEFIEKYKSYLANFGYDPNKIKDTPQD--CEVIS  197 (249)
Q Consensus       164 ls~~~l~~~~~~l~~~G~d~s~l~~t~Q~--C~~~~  197 (249)
                      ++++.+++++++|+++|||.++|+.++|+  |+|.+
T Consensus       142 l~~~~~~~~~~~~~~~G~d~~~l~~~~Q~~~C~~~~  177 (181)
T d1i4ua_         142 LADQYVKKCEAAFKNINVDTTRFVKTVQGSSCPYDT  177 (181)
T ss_dssp             CCHHHHHHHHHHHHHTTCCGGGEEECCCSTTSCHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHeEECCCCCCCCCCc
Confidence            99999999999999999999999999994  98754
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Back     information, alignment and structure
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]} Back     information, alignment and structure
>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} Back     information, alignment and structure
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus), equ c 1 [TaxId: 9796]} Back     information, alignment and structure
>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [TaxId: 13249]} Back     information, alignment and structure
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]} Back     information, alignment and structure
>d1x8qa_ b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]} Back     information, alignment and structure
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]} Back     information, alignment and structure
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2 [TaxId: 9913]} Back     information, alignment and structure
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xkia_ b.60.1.1 (A:) Von Ebner's gland protein (VEGP, tear lipocalin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure