Citrus Sinensis ID: 025785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKGKFKGKKSE
Secondary Structure (PSIPRED)
cccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccc
Coil and Loop (DISEMBL)
MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFgrqkpvhhllgggksaDVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNIsglfnrspskvprfvlppevfaniGTTVCANVNEALGllqdiscgGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDsgflskipkgkfkgkkse
Flexible Loop (DISEMBL)
mpekitaenildnlveTISDKVQKQKAVSffeeetsssvTARFNRLFGrqkpvhhllgggksadVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYkkldsgflskipkgkfkgkkse
Low Complexity Region (SEG)
MPEKITAENILDNLVETISDKVQKQKavsffeeetsssvtaRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQllvavaslwvaavIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSflnnvfqqlqnqYKKLDSGFLSkipkgkfkgkkSE
Disordered region (IsUnstruct)
*********ILDNLVETI********************VTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGF***************
Disordered Region (DISOPRED)
********************************************************LGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGF***************
Disordered Region (DISEMBL)
MPEKITAENILDNLVETISDKVQKQKAV**********VTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPK*********
Disordered Region (DISPRO)
****************************************ARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKGKFKGKKSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9SS37	247	Reticulon-like protein B8	yes	no	0.991	0.995	0.630	8e-92
O82352	255	Reticulon-like protein B5	no	no	0.943	0.917	0.426	6e-55
Q6DBN4	253	Reticulon-like protein B6	no	no	0.943	0.924	0.435	1e-53
Q9SUR3	275	Reticulon-like protein B1	no	no	0.822	0.741	0.426	5e-48
Q9SUT9	271	Reticulon-like protein B2	no	no	0.822	0.752	0.401	1e-47
Q9SH59	255	Reticulon-like protein B3	no	no	0.931	0.905	0.391	2e-47
Q9FFS0	257	Reticulon-like protein B4	no	no	0.818	0.789	0.415	6e-44
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.818	0.902	0.374	2e-41
Q9M145	244	Reticulon-like protein B7	no	no	0.814	0.827	0.365	8e-36
Q8GYH6	226	Reticulon-like protein B1	no	no	0.818	0.898	0.325	1e-30

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  336 bits (862), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 157/249 (63%), Positives = 197/249 (79%), Gaps = 3/249 (1%)

Query: 1   MPEKITAENILDNLVETISDKVQKQK-AVSFFEEETSSSVTARFNRLFGRQKPVHHLLGG 59
           MP+K   E+++ +LV+  ++ VQK K   SFFE+E   SV++RFNRLF RQKP+HH+LGG
Sbjct: 1   MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQE--DSVSSRFNRLFDRQKPIHHVLGG 58

Query: 60  GKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGL 119
           GKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG 
Sbjct: 59  GKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGF 118

Query: 120 FNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAV 179
            NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ L+AV  LWVAA+
Sbjct: 119 LNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAM 178

Query: 180 IGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPK 239
           +GS CN LTVLYIGFV AHT+PVLYE++ED+VD F++++  +  + YKKLD+GFLS+IP 
Sbjct: 179 VGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPS 238

Query: 240 GKFKGKKSE 248
           GKF  KK E
Sbjct: 239 GKFGLKKRE 247

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  214 bits (544), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 152/239 (63%), Gaps = 5/239 (2%)

Query: 12  DNLVETISDKVQKQKAVS-----FFEEETSSSVTARFNRLFGRQKPVHHLLGGGKSADVL 66
           ++L+E IS+K+    + S     + + ++ S+V A+  R+FGR+KPVH +LGGGK ADV 
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 67  LWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126
           LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  +
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 127 VPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNL 186
           +P   +P E F  + +++   +N+A  +L+ I+ G  LK+ L+ V  LW+ +V+G+W N 
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query: 187 LTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKGKFKGK 245
           LT++YI FV  HT+P+LYEKHEDKVD       ++LQ QY   D   LSKIP    K K
Sbjct: 193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 149/239 (62%), Gaps = 5/239 (2%)

Query: 12  DNLVETISDKVQKQKAVSFF-----EEETSSSVTARFNRLFGRQKPVHHLLGGGKSADVL 66
           ++L+E I+DK+    + S       + E+ S++ A+  RLFGR+KPVH +LGGG  ADV 
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 67  LWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126
           LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 127 VPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNL 186
           +P   +  E F  I + +   +N+A  +L+ I+ G  LK+ L+ V  LW+ +V+G+W N 
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

Query: 187 LTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKGKFKGK 245
           LT++YI FV  HT+P+LYEKHEDKVD       ++L+  Y   D   LSK+P    K K
Sbjct: 193 LTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  191 bits (485), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%)

Query: 45  RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
           RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  ++
Sbjct: 72  RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query: 105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
           + +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  L
Sbjct: 132 VVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDL 191

Query: 165 KQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQN 224
           K+ L+A+A LWV +++G   N LT+ YI  V   T+P+ Y+K+EDKVD        +L+ 
Sbjct: 192 KKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKK 251

Query: 225 QYKKLDSGFLSKIPKGKFKGKKSE 248
           QY  LD   LSKIP G  K KK +
Sbjct: 252 QYAVLDEKVLSKIPLGPLKNKKKD 275

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 128/204 (62%)

Query: 45  RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
           RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  ++
Sbjct: 68  RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMI 127

Query: 105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
           + +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +
Sbjct: 128 VALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDI 187

Query: 165 KQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQN 224
           K+ L A+A LWV +++G   + LT+ YI  V   T+P+ Y+K+EDKVDS+      +L+ 
Sbjct: 188 KKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKK 247

Query: 225 QYKKLDSGFLSKIPKGKFKGKKSE 248
           QY  LD+   SKIP+G  K KK +
Sbjct: 248 QYAVLDAKVFSKIPRGPLKDKKKD 271

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 142/240 (59%), Gaps = 9/240 (3%)

Query: 12  DNLVETISDKVQKQKAVSFFEE-----ETSSSVTARFNRLFGRQKPVHHLLGGGKSADVL 66
           ++++E IS+K+      S         + S+S+  +  RLFGR++P+H L GGGK AD+ 
Sbjct: 9   ESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFGGGKPADIF 68

Query: 67  LWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126
           LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  
Sbjct: 69  LWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLH 128

Query: 127 VPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNL 186
           +P   +P +V   + + +   +N    +L+DI+ G  LK+ L+ +A LWV + +GS CN 
Sbjct: 129 IPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNF 188

Query: 187 LTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLD----SGFLSKIPKGKF 242
           LT++YI  V   T+PVLYEK+EDKVD F     ++++ QY + D    S  +SKIPKG F
Sbjct: 189 LTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPKGAF 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 4/207 (1%)

Query: 45  RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
           RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +
Sbjct: 51  RLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAI 110

Query: 105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
             + A F W N     ++S   +P   +P +    + + +   +N  L LL++I+ G  +
Sbjct: 111 FALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDV 170

Query: 165 KQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQN 224
           K+ ++ +A LWV ++IGS  N LT+ Y   V   T+PVLYEK+EDKVD++     ++++ 
Sbjct: 171 KKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKK 230

Query: 225 QYKKLDSGFL----SKIPKGKFKGKKS 247
           QY  LD   L    SKIP+G    KK 
Sbjct: 231 QYAVLDEKVLRKVISKIPRGALNKKKD 257

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 122/203 (60%)

Query: 44  NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFAL 103
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A 
Sbjct: 21  TKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHAS 80

Query: 104 VLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGK 163
           +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG  
Sbjct: 81  MTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRD 140

Query: 164 LKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQ 223
                +   SL++ ++IG++ N + +L+IGFV+  TLPV+YE +ED VD+    + ++++
Sbjct: 141 PPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMK 200

Query: 224 NQYKKLDSGFLSKIPKGKFKGKK 246
             YKK+D+  LSKIP+G  K KK
Sbjct: 201 KLYKKVDTNVLSKIPRGTVKNKK 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 121/205 (59%), Gaps = 3/205 (1%)

Query: 34  ETSSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNY 93
           ++   + A   R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +   
Sbjct: 42  DSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGR 101

Query: 94  HFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALG 153
             LT +C   +L +L  F W N     N+SP  +    +P +      + +   +N A  
Sbjct: 102 RLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFA 158

Query: 154 LLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDS 213
            L+ I+    +K  ++AV  LW+ +VIG+W + L++LYI FV  HT+P+LYEK+ED++D 
Sbjct: 159 TLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDP 218

Query: 214 FLNNVFQQLQNQYKKLDSGFLSKIP 238
                  +++  Y+  ++ FLSKIP
Sbjct: 219 IAEKAVIEMKKHYQVFEAKFLSKIP 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 111/203 (54%)

Query: 45  RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
           RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L+
Sbjct: 24  RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLL 83

Query: 105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
           + ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D++ G   
Sbjct: 84  IVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDF 143

Query: 165 KQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQN 224
           +     V  LW+ + IGS+ +L T+LYIG + + T+P LY K++ KVD     + ++L +
Sbjct: 144 RLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSH 203

Query: 225 QYKKLDSGFLSKIPKGKFKGKKS 247
            YK +D   +S++     K K S
Sbjct: 204 HYKIVDENVISRLSWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
255561156	247	conserved hypothetical protein [Ricinus	0.995	1.0	0.758	1e-106
224066537	247	predicted protein [Populus trichocarpa]	0.995	1.0	0.733	1e-105
225446769	248	PREDICTED: reticulon-like protein B8 iso	1.0	1.0	0.701	1e-102
356501425	245	PREDICTED: uncharacterized protein LOC10	0.987	1.0	0.717	1e-102
224082600	247	predicted protein [Populus trichocarpa]	0.995	1.0	0.713	1e-102
363807850	245	uncharacterized protein LOC100787981 [Gl	0.987	1.0	0.709	1e-100
449502127	249	PREDICTED: reticulon-like protein B8-lik	1.0	0.995	0.690	4e-95
388492990	247	unknown [Lotus japonicus]	0.995	1.0	0.701	2e-92
356526940	243	PREDICTED: reticulon-like protein B8-lik	0.979	1.0	0.673	8e-92
356567474	243	PREDICTED: reticulon-like protein B8-lik	0.979	1.0	0.665	6e-91

>gi|255561156|ref|XP_002521590.1| conserved hypothetical protein [Ricinus communis] gi|223539268|gb|EEF40861.1| conserved hypothetical protein [Ricinus communis]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/248 (75%), Positives = 207/248 (83%), Gaps = 1/248 (0%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M EK TAE  L+NLVE ++D V KQK+VSFFEEETSS VTARF+RLFGRQKPVHHLLGGG
Sbjct: 1   MAEKKTAEKFLNNLVEVLADSVPKQKSVSFFEEETSS-VTARFHRLFGRQKPVHHLLGGG 59

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISASVL GATAIW+LFEWLNYHFLT+VC ALVLGMLAQF W N SGL 
Sbjct: 60  KSADVLLWRNKKISASVLTGATAIWILFEWLNYHFLTLVCLALVLGMLAQFVWTNASGLV 119

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           NRSP KVPR VLP EVF +IG +V   +N AL  LQD+SCGG LKQ LV VASLW +AVI
Sbjct: 120 NRSPPKVPRLVLPDEVFVSIGRSVGVEINHALQFLQDVSCGGNLKQFLVVVASLWASAVI 179

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTVLY GFVAAHTLPVLYE++ED+VD F+  V +QLQ  Y+KLD+G LSKIPKG
Sbjct: 180 GSWCNFLTVLYTGFVAAHTLPVLYERYEDQVDDFVYKVLEQLQGHYRKLDTGLLSKIPKG 239

Query: 241 KFKGKKSE 248
             KGKK E
Sbjct: 240 NLKGKKHE 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066537|ref|XP_002302126.1| predicted protein [Populus trichocarpa] gi|222843852|gb|EEE81399.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/248 (73%), Positives = 208/248 (83%), Gaps = 1/248 (0%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           MPEKITAE++  NLVETI+D V KQK+VSFFEE    SVT+R NRLFGRQKPVHH+LGGG
Sbjct: 1   MPEKITAESLFSNLVETIADNVPKQKSVSFFEE-GEESVTSRINRLFGRQKPVHHILGGG 59

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISA VL GATAIWVLFEWLNYH L++VCFAL LGMLAQF W+N SGL 
Sbjct: 60  KSADVLLWRNKKISAGVLTGATAIWVLFEWLNYHLLSLVCFALALGMLAQFVWINASGLM 119

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           NRSPS+VPR VLP ++F +IG ++ A VN AL  LQD+SCGG LKQ L A+ SLWVAA+I
Sbjct: 120 NRSPSQVPRLVLPDDIFVSIGRSIGAEVNRALLFLQDLSCGGNLKQFLAAIVSLWVAAII 179

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTV+YIGFVAAHTLPVLYE++ED+VD F+   F QL+N Y+KLD+G L KIPKG
Sbjct: 180 GSWCNFLTVMYIGFVAAHTLPVLYERYEDQVDDFVFKAFDQLRNNYQKLDAGVLGKIPKG 239

Query: 241 KFKGKKSE 248
           KF GKK E
Sbjct: 240 KFNGKKHE 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446769|ref|XP_002283026.1| PREDICTED: reticulon-like protein B8 isoform 3 [Vitis vinifera] gi|225446771|ref|XP_002283019.1| PREDICTED: reticulon-like protein B8 isoform 2 [Vitis vinifera] gi|225446773|ref|XP_002283015.1| PREDICTED: reticulon-like protein B8 isoform 1 [Vitis vinifera] gi|302143506|emb|CBI22067.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 210/248 (84%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           MPE ITAE +L+N++ETISD  QK+K+VSFFEEE S+SVT++F RLFGR+KPV++LLG G
Sbjct: 1   MPEGITAEKLLNNIMETISDNAQKKKSVSFFEEEKSNSVTSQFKRLFGREKPVYNLLGAG 60

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSAD++LWRNKKISAS + GAT IWVLFEWLNYHFLT++CFA+VLGM+AQF W N SG+F
Sbjct: 61  KSADLMLWRNKKISASFITGATLIWVLFEWLNYHFLTLLCFAVVLGMIAQFVWSNASGVF 120

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           +RS S+VPR VLP E+F NIG  V   +N+ALG LQD++CGG LKQ L+ V SLW AAVI
Sbjct: 121 SRSSSEVPRIVLPDELFQNIGVAVGVQINQALGFLQDVACGGNLKQFLLVVVSLWAAAVI 180

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTVLY+GF+AAHTLPVLYE++ED+VD F+  V  QLQ+ Y+KLDSGFLSKIPKG
Sbjct: 181 GSWCNFLTVLYVGFIAAHTLPVLYERYEDQVDGFVYQVLGQLQHNYRKLDSGFLSKIPKG 240

Query: 241 KFKGKKSE 248
             KGKK E
Sbjct: 241 SLKGKKHE 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501425|ref|XP_003519525.1| PREDICTED: uncharacterized protein LOC100500122 [Glycine max]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/248 (71%), Positives = 207/248 (83%), Gaps = 3/248 (1%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M EKITAEN+L+ LVET++   +KQK+ SFFEE+ SSSV+ +FNRLFGRQKPVHH+LGGG
Sbjct: 1   MSEKITAENLLNTLVETLT---EKQKSGSFFEEDKSSSVSYQFNRLFGRQKPVHHILGGG 57

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISASVL  ATAIWVLFEWLNY+F+TI+ F + LGML QF W N+SGLF
Sbjct: 58  KSADVLLWRNKKISASVLSAATAIWVLFEWLNYNFITILFFVVALGMLGQFLWTNVSGLF 117

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           +R PSKVPRFVLP ++F NI T V A VN  L  LQD+SCGG LKQ L+ V SLW  AVI
Sbjct: 118 SRKPSKVPRFVLPDDIFVNIATVVGAEVNRGLRFLQDVSCGGSLKQFLIVVVSLWAGAVI 177

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTV+YIGFVAAHTLPVLYE++ED+VD+F+  VF Q+QN Y+KLD+G LSKIPKG
Sbjct: 178 GSWCNFLTVMYIGFVAAHTLPVLYERYEDQVDNFVYKVFDQMQNHYQKLDTGLLSKIPKG 237

Query: 241 KFKGKKSE 248
           K KGKK E
Sbjct: 238 KLKGKKYE 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082600|ref|XP_002306759.1| predicted protein [Populus trichocarpa] gi|222856208|gb|EEE93755.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/248 (71%), Positives = 212/248 (85%), Gaps = 1/248 (0%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           MPEKITAE +++NLVET +D V K+K+VSFFEEE + SVT+R NRLFGRQKP+HHLLGGG
Sbjct: 1   MPEKITAEKLINNLVETFADTVPKKKSVSFFEEE-NKSVTSRLNRLFGRQKPIHHLLGGG 59

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISA VL+GATAIWVLFE LNY+FL++VC+A+VLGMLAQF W N SGL 
Sbjct: 60  KSADVLLWRNKKISAGVLIGATAIWVLFELLNYNFLSLVCYAVVLGMLAQFVWTNASGLI 119

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           NR+PS+VPR VLP ++F +IG ++ + VN  L  LQD+SCGG LK+ LV VASL VAA+I
Sbjct: 120 NRAPSQVPRLVLPKDIFVSIGRSIGSEVNRDLQFLQDVSCGGNLKKFLVVVASLLVAAII 179

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTV+YIGFVAAHTLPVLYE+++D+VD F++    QLQ  Y+KLD+GFLSKIPKG
Sbjct: 180 GSWCNFLTVIYIGFVAAHTLPVLYERYDDEVDDFVHMALDQLQYNYRKLDAGFLSKIPKG 239

Query: 241 KFKGKKSE 248
           KFKGKK E
Sbjct: 240 KFKGKKHE 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807850|ref|NP_001241930.1| uncharacterized protein LOC100787981 [Glycine max] gi|255638847|gb|ACU19727.1| unknown [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 203/248 (81%), Gaps = 3/248 (1%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M EKITAE +L+ LVET+++K   QK+  FFEE+ SSSV+++FNRLFGRQKPVHH+LGGG
Sbjct: 1   MSEKITAEKLLNTLVETLTEK---QKSGLFFEEDKSSSVSSQFNRLFGRQKPVHHILGGG 57

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISASVL  ATAIWVLFEWLNY+FLTI+ F + LGML QF W N SGLF
Sbjct: 58  KSADVLLWRNKKISASVLSAATAIWVLFEWLNYNFLTILFFVVALGMLGQFLWTNASGLF 117

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           +R PSKVPRFV P  +F NI T V A VN  L  LQD+SCGG LKQ L+ + SLW  AVI
Sbjct: 118 SRKPSKVPRFVFPDGIFVNIATAVGAEVNRGLRFLQDVSCGGNLKQFLIVIVSLWAGAVI 177

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTV+YIGFVAAHTLPVLYE++ED+VD+F+  VF QLQN Y+KLD+G LSKIPKG
Sbjct: 178 GSWCNFLTVMYIGFVAAHTLPVLYERYEDQVDNFVYKVFDQLQNHYQKLDTGLLSKIPKG 237

Query: 241 KFKGKKSE 248
           K KGKK E
Sbjct: 238 KLKGKKYE 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502127|ref|XP_004161550.1| PREDICTED: reticulon-like protein B8-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/249 (69%), Positives = 197/249 (79%), Gaps = 1/249 (0%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEET-SSSVTARFNRLFGRQKPVHHLLGG 59
           M EK+TAE+ ++N+ E +++  QK K+VSFF E++ SSSV  + NR+FGRQKPV++LLGG
Sbjct: 1   MSEKMTAEDFINNISEVLTEHGQKGKSVSFFGEDSKSSSVAGQINRIFGRQKPVYNLLGG 60

Query: 60  GKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGL 119
           GKSADVLLWRNKKISASVL GAT IWVLFEWLNYHFLT+VCFALVLGMLAQF W N SG 
Sbjct: 61  GKSADVLLWRNKKISASVLTGATIIWVLFEWLNYHFLTLVCFALVLGMLAQFMWTNASGF 120

Query: 120 FNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAV 179
            NRS S VPR VLP E+F NI  T  A VN AL  LQDI+C G LK  LVAV SLWV AV
Sbjct: 121 LNRSSSNVPRLVLPKELFVNIAVTFGAEVNRALCYLQDIACEGNLKHFLVAVVSLWVGAV 180

Query: 180 IGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPK 239
           I SWCN +TVLYIGFVAAHTLP+LYEK+ED+VD+F   VF QL   Y+K DS  LSKIP+
Sbjct: 181 ISSWCNFVTVLYIGFVAAHTLPILYEKYEDEVDTFAYKVFDQLCGHYQKFDSSVLSKIPR 240

Query: 240 GKFKGKKSE 248
           G FKGKK E
Sbjct: 241 GAFKGKKYE 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492990|gb|AFK34561.1| unknown [Lotus japonicus]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 200/248 (80%), Gaps = 1/248 (0%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M +KITAEN+L+ LVETIS   + +K+VSFFEEE  +SV+++FNRLFGRQKPVHHLLGGG
Sbjct: 1   MSDKITAENLLNTLVETIS-HAEHKKSVSFFEEEKPNSVSSQFNRLFGRQKPVHHLLGGG 59

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISA VL GATAIWV+FEWLNY+FLT++ FAL LGMLAQF W N SG+F
Sbjct: 60  KSADVLLWRNKKISAGVLTGATAIWVVFEWLNYNFLTLLFFALALGMLAQFLWANASGVF 119

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
            R  SKVPRFVLP +   NI T V   VN  L +LQD SCGG LKQ L+ V SLW  AVI
Sbjct: 120 GRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKQFLLVVVSLWAGAVI 179

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN LTV+YIGFVAAHT PVLYE++ED+VD F+     Q++NQY+KLDSG LSKIP G
Sbjct: 180 GSWCNFLTVMYIGFVAAHTFPVLYERYEDQVDDFVYKFLGQMRNQYQKLDSGLLSKIPNG 239

Query: 241 KFKGKKSE 248
           KFKGKK E
Sbjct: 240 KFKGKKHE 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526940|ref|XP_003532073.1| PREDICTED: reticulon-like protein B8-like [Glycine max]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 167/248 (67%), Positives = 196/248 (79%), Gaps = 5/248 (2%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M EK TAEN+++NLV+T  DK   +K+VSFFE++ S SV+++ NRLFGRQKPVHH+LGGG
Sbjct: 1   MSEKTTAENLIENLVDTFVDK---KKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGG 57

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISASVL  AT  WVLFEWLNY+FLTI+CF LVL MLAQF W N S +F
Sbjct: 58  KSADVLLWRNKKISASVLACATIAWVLFEWLNYNFLTILCFGLVLVMLAQFLWSNASSMF 117

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           N SPS VPR VLP E+F NI T V   VN  L  LQD +CGG LKQ L+ V  L+  AVI
Sbjct: 118 NSSPSNVPRLVLPEELFLNIATVVGGKVNMGLRFLQDAACGGNLKQFLIVVGCLFAGAVI 177

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           GSWCN ++V+YIGFVAAHTLPVLYEK+ED+VD+F+  VF Q+QNQY+ LD+  LSKIPKG
Sbjct: 178 GSWCNFISVIYIGFVAAHTLPVLYEKYEDEVDNFVYKVFGQMQNQYRNLDASVLSKIPKG 237

Query: 241 KFKGKKSE 248
             KGKK E
Sbjct: 238 --KGKKHE 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567474|ref|XP_003551944.1| PREDICTED: reticulon-like protein B8-like [Glycine max]

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 165/248 (66%), Positives = 196/248 (79%), Gaps = 5/248 (2%)

Query: 1   MPEKITAENILDNLVETISDKVQKQKAVSFFEEETSSSVTARFNRLFGRQKPVHHLLGGG 60
           M EK TA+N+++NLV+T  DK   +K+VSFFE++ S SV+++ NRLFGRQKPVHH+LGGG
Sbjct: 1   MSEKTTADNLIENLVDTFVDK---KKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGG 57

Query: 61  KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLF 120
           KSADVLLWRNKKISASVL  AT +WVLFEWLNY+FLTI+CFALVL MLAQF W N SG+F
Sbjct: 58  KSADVLLWRNKKISASVLTSATIVWVLFEWLNYNFLTILCFALVLVMLAQFLWSNASGMF 117

Query: 121 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVI 180
           N SPS VPR VLP E+F NI T V   VN  L  LQD +CGG LKQ LV V  L+  AVI
Sbjct: 118 NSSPSNVPRLVLPEELFVNIATVVGGKVNMGLRFLQDAACGGNLKQFLVVVGCLFAGAVI 177

Query: 181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKG 240
           G+W N ++V+YIGFVAAHTLPVLYE +ED+VD+F+  V  Q+QNQY+ LD+  LSKIPKG
Sbjct: 178 GTWFNFISVIYIGFVAAHTLPVLYEMYEDEVDNFVYKVLGQMQNQYRNLDTSVLSKIPKG 237

Query: 241 KFKGKKSE 248
             KGKK E
Sbjct: 238 --KGKKHE 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.903	0.878	0.371	6.1e-39
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.770	0.694	0.376	6.5e-35
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.915	0.883	0.349	4.6e-34
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.770	0.704	0.350	9.5e-34
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.770	0.848	0.350	3.3e-31
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.447	0.420	0.439	4.7e-29
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.701	0.698	0.274	2.9e-22
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.741	0.915	0.268	2.1e-20
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.677	0.827	0.267	5.8e-18
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.387	0.440	0.336	4.7e-15

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 85/229 (37%), Positives = 124/229 (54%)

Query:    12 DNLVETISDKVQKQKXXXXXXXXXX-----XXXXXRFNRLFGRQKPVHHLLGGGKSADVL 66
             ++L+E IS+K+                        +  R+FGR+KPVH +LGGGK ADV 
Sbjct:    13 ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query:    67 LWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126
             LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  +
Sbjct:    73 LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query:   127 VPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSWCNL 186
             +P   +P E F  + +++   +N+A  +L+ I+ G  LK+             +G+W N 
Sbjct:   133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query:   187 LTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLS 235
             LT++YI FV  HT+P+LYEKHEDKVD             Y   D   LS
Sbjct:   193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLS 241

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/191 (37%), Positives = 105/191 (54%)

Query:    45 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
             RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  ++
Sbjct:    72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query:   105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
             + +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  L
Sbjct:   132 VVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDL 191

Query:   165 KQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXX 224
             K+             +G   N LT+ YI  V   T+P+ Y+K+EDKVD            
Sbjct:   192 KKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKK 251

Query:   225 XYKKLDSGFLS 235
              Y  LD   LS
Sbjct:   252 QYAVLDEKVLS 262

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 81/232 (34%), Positives = 111/232 (47%)

Query:     8 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKS 62
             E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK 
Sbjct:     9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68

Query:    63 ADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNR 122
             AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++
Sbjct:    69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128

Query:   123 SPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGS 182
             S   +P   +P +    + + +   +N  L LL++I+ G  +K+             IGS
Sbjct:   129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188

Query:   183 WCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFL 234
               N LT+ Y   V   T+PVLYEK+EDKVD+            Y  LD   L
Sbjct:   189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVL 240

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 67/191 (35%), Positives = 105/191 (54%)

Query:    45 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
             RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  ++
Sbjct:    68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMI 127

Query:   105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
             + +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +
Sbjct:   128 VALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDI 187

Query:   165 KQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXX 224
             K+             +G   + LT+ YI  V   T+P+ Y+K+EDKVDS           
Sbjct:   188 KKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKK 247

Query:   225 XYKKLDSGFLS 235
              Y  LD+   S
Sbjct:   248 QYAVLDAKVFS 258

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 67/191 (35%), Positives = 102/191 (53%)

Query:    45 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALV 104
             +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +
Sbjct:    22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASM 81

Query:   105 LGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKL 164
               ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG   
Sbjct:    82 TSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDP 141

Query:   165 KQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXX 224
                            IG++ N + +L+IGFV+  TLPV+YE +ED VD+           
Sbjct:   142 PLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKK 201

Query:   225 XYKKLDSGFLS 235
              YKK+D+  LS
Sbjct:   202 LYKKVDTNVLS 212

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 51/116 (43%), Positives = 67/116 (57%)

Query:    12 DNLVETISDKVQKQKXXXXXXXXXX-----XXXXXRFNRLFGRQKPVHHLLGGGKSADVL 66
             ++L+E I+DK+                        +  RLFGR+KPVH +LGGG  ADV 
Sbjct:    13 ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query:    67 LWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNR 122
             LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N+
Sbjct:    73 LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNK 128

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 48/175 (27%), Positives = 84/175 (48%)

Query:    62 SADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFN 121
             +AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   N
Sbjct:    63 AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 122

Query:   122 RSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXX-XXXXI 180
             R    +P  VL  E+  +   +    +N  L +  D++ G   +               I
Sbjct:   123 RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAI 182

Query:   181 GSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLS 235
             GS+ +L T+LYIG + + T+P LY K++ KVD             YK +D   +S
Sbjct:   183 GSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVIS 237

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 50/186 (26%), Positives = 89/186 (47%)

Query:    50 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAI-WVLFEWLNYHFLTIVCFALVLGML 108
             ++ VH  +  G  AD+++W+N++    +L+G+T + W LFE   Y F   V    +L ++
Sbjct:     2 EESVHQSIRFGSVADLIMWKNRR-GGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVV 60

Query:   109 AQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXX 168
               F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ  
Sbjct:    61 ILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF 120

Query:   169 XXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKK 228
                        +G++ N LT+LY+G V +  +P LYE+++D +D             Y+K
Sbjct:   121 RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 180

Query:   229 LDSGFL 234
             +D   L
Sbjct:   181 IDERLL 186

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 45/168 (26%), Positives = 79/168 (47%)

Query:    44 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFAL 103
             ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L
Sbjct:     6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVL 65

Query:   104 VLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGK 163
             +L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+    
Sbjct:    66 LLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARD 125

Query:   164 LKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKV 211
              +              IGS  +  T+ +   +   T+P  YE++ED +
Sbjct:   126 SELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 33/98 (33%), Positives = 50/98 (51%)

Query:    63 ADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNR 122
             AD+LLWRN+  +  +L+ +T  W LFE   Y+ L+ V   L+L +   F W   + + NR
Sbjct:     7 ADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNR 66

Query:   123 SPSKVPRFVLPPEVFAN-IGTTVCANVNEALGLLQDIS 159
                 VP   +P E FAN     +   +N  L +  DI+
Sbjct:    67 PLPPVPNMEIPEE-FANKAADDLRVWINYVLSIASDIT 103

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SS37	RTNLH_ARATH	No assigned EC number	0.6305	0.9919	0.9959	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003047301 hypothetical protein (247 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam02453	164	pfam02453, Reticulon, Reticulon	3e-48

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  156 bits (397), Expect = 3e-48
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 63  ADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNR 122
           AD+LLWR+ K S  V      IW+LF    Y  L+++ + L+L +   F W     L N 
Sbjct: 2   ADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLNA 61

Query: 123 SPSK-VPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIG 181
            P    P   L  E    I  ++   +N+AL  L+ +  G  L   L A   LW+ + +G
Sbjct: 62  VPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYLG 121

Query: 182 SWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQN 224
           S  + LT+LYIG + A T+P+LYEK++D++D+++     +++ 
Sbjct: 122 SLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.2
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	93.75
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.08
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	91.22
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	83.43

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-57  Score=399.53  Aligned_cols=214  Identities=43%  Similarity=0.787  Sum_probs=205.6

Q ss_pred             CCcccc---ccchhccccCCCCCCcccccccCCCcccccccccccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 025785           30 FFEEET---SSSVTARFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLG  106 (248)
Q Consensus        30 ~~~~~~---~~~~~~~~~r~f~r~~~~h~~lgggk~aDlLlWrn~k~Sg~vl~~~t~~w~Lf~~~~yslltlvs~illl~  106 (248)
                      |+++++   ++ .+++.+|+|+|++|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.+|++|++++++
T Consensus         9 ~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~   87 (230)
T KOG1792|consen    9 NSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLA   87 (230)
T ss_pred             ccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            777776   33 67889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC-CCC--CCC-ceecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccchHHHHHHHHHHHHHHHHHH
Q 025785          107 MLAQFFWVNISGLFNR-SPS--KVP-RFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGS  182 (248)
Q Consensus       107 l~~lFl~s~~~~~~~k-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~~~L~vls~vGs  182 (248)
                      +.+.|.|++...++|| ++|  ..| ++++|||.+++.+.+++.++|+.+..+|++++|||++.|++++++||++|++|+
T Consensus        88 ~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs  167 (230)
T KOG1792|consen   88 LAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGS  167 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888 566  688 999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 025785          183 WCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLSKIPKGKFKG  244 (248)
Q Consensus       183 ~~s~lTLl~i~~v~~fTvP~lYekyqd~ID~~~~~~~~~i~~~y~~~~~kv~~kiP~~~~k~  244 (248)
                      |||++||+|+|++++||+|++||+|||+||++++++..+++++|+++|+|+++|||+++.+.
T Consensus       168 ~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  168 LFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999998664

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=1.8e-37  Score=258.40  Aligned_cols=163  Identities=29%  Similarity=0.581  Sum_probs=48.0

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhcCCC------CCCCceecCHH
Q 025785           62 SADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSP------SKVPRFVLPPE  135 (248)
Q Consensus        62 ~aDlLlWrn~k~Sg~vl~~~t~~w~Lf~~~~yslltlvs~illl~l~~lFl~s~~~~~~~k~~------~~~p~~~isee  135 (248)
                      ++|+++||||+.||.+|++++++|++++++++|++|++|+++++.+++.+++.....++++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            589999999999999999999999999999999999999999999999999887777777754      34457899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhcccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH
Q 025785          136 VFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSFL  215 (248)
Q Consensus       136 ~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~fTvP~lYekyqd~ID~~~  215 (248)
                      .++++++.+.+.+|..+..+|+++.++|++.+++++++||+++++|+++|++||+|++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025785          216 NNVFQQLQN  224 (248)
Q Consensus       216 ~~~~~~i~~  224 (248)
                      +++++++||
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            988888764

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.20  E-value=0.0052  Score=61.88  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCCCCC--ce
Q 025785           61 KSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFN--------RSPSKVP--RF  130 (248)
Q Consensus        61 k~aDlLlWrn~k~Sg~vl~~~t~~w~Lf~~~~yslltlvs~illl~l~~lFl~s~~~~~~~--------k~~~~~p--~~  130 (248)
                      .+.++..|+||.+|..+++..+.  .++.    ..+.-+.-..++.+++..+|.....-.+        +.||+..  +-
T Consensus       505 ~~~~l~~We~P~kt~~Fl~~~~~--iI~r----~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq  578 (683)
T PF04842_consen  505 WLQKLASWEEPLKTLVFLALFLY--IIYR----GWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ  578 (683)
T ss_pred             HHHHHhhccCcchhHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence            46789999999999998887775  3322    2222222223333444445533221111        1222211  11


Q ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 025785          131 VLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPV  202 (248)
Q Consensus       131 ~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~fTvP~  202 (248)
                      .+.=.....-++......|-++-++|.|++...++.+-+|++.|..++.+-..+.+--++...++-.||-..
T Consensus       579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~  650 (683)
T PF04842_consen  579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRES  650 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            222233334466777889999999999999999999999999999999999999999999999998888643

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=0.3  Score=43.58  Aligned_cols=81  Identities=11%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             HhhhHhcccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC-----------------------hhH
Q 025785          154 LLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKH-----------------------EDK  210 (248)
Q Consensus       154 ~lr~i~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~fTvP~lYeky-----------------------qd~  210 (248)
                      ...+++.+||.+.++.+..+..++..+-.+++..++..++.+++++++.+|.++                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            467899999999999999999888888888888888888888888887776655                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 025785          211 VDSFLNNVFQQLQNQYKKLDSGFL  234 (248)
Q Consensus       211 ID~~~~~~~~~i~~~y~~~~~kv~  234 (248)
                      ++++...+..+++...+++.+-.+
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~ia~  145 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDIAL  145 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888888887777765433

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.08  E-value=2.1  Score=39.92  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=17.9

Q ss_pred             cccccccccccchhHHHHHHHHH
Q 025785           61 KSADVLLWRNKKISASVLMGATA   83 (248)
Q Consensus        61 k~aDlLlWrn~k~Sg~vl~~~t~   83 (248)
                      .+.++++|+||..+-.++...+.
T Consensus        31 ~vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHHHHH
Confidence            35689999999988877666664

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=91.22  E-value=1.4  Score=37.04  Aligned_cols=67  Identities=16%  Similarity=0.024  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHhhhHhcccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Q 025785          141 GTTVCANVNEALGLLQDISCGGKLKQLLVAVASLWVAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKH  207 (248)
Q Consensus       141 a~~v~~~iN~~l~~lr~i~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~fTvP~lYeky  207 (248)
                      ++.+...+....+.++.++.++|...+..+++++++.+++--+..+..++++..+-.++=|.+-.++
T Consensus        71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            4455556667778999999999999999999999999998888888888888777777777765533

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=83.43  E-value=1  Score=37.92  Aligned_cols=30  Identities=20%  Similarity=0.381  Sum_probs=23.5

Q ss_pred             CCcccccccccccchhHHHHHHHHHHHHHH
Q 025785           59 GGKSADVLLWRNKKISASVLMGATAIWVLF   88 (248)
Q Consensus        59 ggk~aDlLlWrn~k~Sg~vl~~~t~~w~Lf   88 (248)
                      |.++..++.||||..|++..++.+++-+.+
T Consensus        82 gERl~allsWrdP~aT~lf~~~clv~avvl  111 (156)
T PF08372_consen   82 GERLQALLSWRDPRATALFVVFCLVAAVVL  111 (156)
T ss_pred             HHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence            457899999999999998887776643333

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 50/344 (14%), Positives = 93/344 (27%), Gaps = 125/344 (36%)

Query: 6   TAENILDNLVETISDKVQKQKAVSFFEE-----------------ETSSSVTARF----N 44
            A +    L  T+  K Q++    F EE                    S +T  +    +
Sbjct: 59  DAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 45  RLFG-----------RQKP------------------VHHLLGGGKS---ADVLLWRNKK 72
           RL+            R +P                  +  +LG GK+    DV    + K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC--LSYK 175

Query: 73  ISASVLMGATAIWV----------LFEWLN--YHFLTIVCFALVLGMLAQFFWVN----- 115
           +     M     W+          + E L    + +     +           ++     
Sbjct: 176 VQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 116 ISGLFNRSPSK----VPRFVLPPEVFA--NIG-----TTVCANVNEALG-------LLQD 157
           +  L    P +    V   V   + +   N+      TT    V + L         L  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 158 ISCG---GKLKQLL-----VAVASLWVAAVIGSWCNLLTVLYIGFVAA----------HT 199
            S      ++K LL          L    +  +         +  +A           + 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN------PRRLSIIAESIRDGLATWDNW 347

Query: 200 LPVLYEKHEDKVDSFLNNV-FQQLQNQYKKL----DSGFLSKIP 238
             V  +K    ++S LN +   + +  + +L     S   + IP
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.01
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.14

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.01  E-value=7.4e-07  Score=65.51  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             HHHHHHhhhcCCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccchHHHHH
Q 025785          112 FWVNISGLFNRSPSKVP-------RFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLV  169 (248)
Q Consensus       112 l~s~~~~~~~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lk  169 (248)
                      +|..+.+.++|++..+|       |+.+|+|++++.++.+...+|.++..+|++++++|+..|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            67777889999988887       88999999999999999999999999999999999998874

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.14  E-value=6e-06  Score=57.65  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             HhhhcCCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccc
Q 025785          117 SGLFNRSPSKVP-------RFVLPPEVFANIGTTVCANVNEALGLLQDISCGGK  163 (248)
Q Consensus       117 ~~~~~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d  163 (248)
                      .+.++|++..+|       |+.+|+|.+++.++.+...+|.++..+|++++++|
T Consensus         7 lqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            7 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             TTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            345666665555       88999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00