Citrus Sinensis ID: 025790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEVNVGFFFFLRLSTILN
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHccccEEEcccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEEcEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHcccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHcccHHHHHHHcHcHHHHHHHHHccEEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEcEEEEcccccccHcccccccccccccccccHccccccccccccccHHHHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvadkgkktkveeENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIrkpvydkrndIIKSIPDFWLTAFishpalgellseEDQKIFRYLSslevedfkdvksgysitfnfspnpyfednkltktftfldddgsmkITATSIKwkegmgipngvnhekkgnkrplaeesfftwfsdtqekdtIDGIQDEVAEIIKedlwpnpltyfnneadeeefegdeevnVGFFFFLRLSTILN
Flexible Loop (DISEMBL)
mvadkgkktkveeenaeqidselvlSIEKLQEIQDELEKINeeasekvleveqkyseirkpvydkrnDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSlevedfkdvKSGYSITfnfspnpyfedNKLTKTftfldddgsmKITATsikwkegmgipngvnhekkgnkrpLAEESFFTWFSDTQEKDTIDGIQDEVAEIIkedlwpnpLTYFNNEADEEEFEGDEEVNVGFFFFLRLSTILN
Low Complexity Region (SEG)
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYfnneadeeefegdeevnvgffffLRLSTILN
Disordered region (IsUnstruct)
******************************************************YSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGI*****************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEVNVGFFFFLRLSTI**
Disordered Region (DISOPRED)
**************************IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMG******************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN*******************FFLRLSTIL*
Disordered Region (DISEMBL)
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEVNVGFFFFLRLSTILN
Disordered Region (DISPRO)
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP*G*************EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADE***EG*EEVNVGFFFFLRLSTILN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADKGKKTKVEEENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEVNVGFFFFLRLSTILN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
P53997	269	Protein SET OS=Drosophila	yes	no	0.758	0.698	0.45	5e-45
Q01105	290	Protein SET OS=Homo sapie	yes	no	0.754	0.644	0.448	2e-44
Q9EQU5	289	Protein SET OS=Mus muscul	yes	no	0.754	0.647	0.448	3e-44
Q63945	289	Protein SET OS=Rattus nor	yes	no	0.754	0.647	0.448	3e-44
Q9H2G4	693	Testis-specific Y-encoded	no	no	0.766	0.274	0.368	2e-32
Q8N831	410	Testis-specific Y-encoded	no	no	0.733	0.443	0.371	2e-32
Q9BE64	695	Testis-specific Y-encoded	N/A	no	0.766	0.273	0.364	1e-31
Q7TQI8	677	Testis-specific Y-encoded	no	no	0.766	0.280	0.344	2e-31
Q5R5G8	438	Testis-specific Y-encoded	no	no	0.729	0.413	0.355	2e-31
Q9H0U9	437	Testis-specific Y-encoded	no	no	0.729	0.414	0.355	2e-31

>sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 136/200 (68%), Gaps = 12/200 (6%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP
Sbjct: 32  ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHP 91

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F       
Sbjct: 92  QVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAA 151

Query: 146 S-----MKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGI 198
           S        T+T IKWKEG  +   +  +  GNK+    E  +FF WFSD       D +
Sbjct: 152 SENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFSDN-----TDPV 206

Query: 199 QDEVAEIIKEDLWPNPLTYF 218
            DE+AE+IK+DLWPNPL Y+
Sbjct: 207 NDEIAELIKDDLWPNPLQYY 226

Drosophila melanogaster (taxid: 7227)

>sp|Q01105|SET_HUMAN Protein SET OS=Homo sapiens GN=SET PE=1 SV=3

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 44  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 163 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 217

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 218 GEVIKDDIWPNPLQYY 233

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Homo sapiens (taxid: 9606)

>sp|Q9EQU5|SET_MOUSE Protein SET OS=Mus musculus GN=Set PE=1 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 162 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 216

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 217 GEVIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Mus musculus (taxid: 10090)

>sp|Q63945|SET_RAT Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 43  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 102

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct: 103 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 161

Query: 146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 162 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 216

Query: 203 AEIIKEDLWPNPLTYF 218
            E+IK+D+WPNPL Y+
Sbjct: 217 GEVIKDDIWPNPLQYY 232

Multitasking protein, involved in apoptosis, transcription, nucleosome assembly and histone binding. Isoform 2 anti-apoptotic activity is mediated by inhibition of the GZMA-activated DNase, NME1. In the course of cytotoxic T-lymphocyte (CTL)-induced apoptosis, GZMA cleaves SET, disrupting its binding to NME1 and releasing NME1 inhibition. Isoform 1 and isoform 2 are potent inhibitors of protein phosphatase 2A. Isoform 1 and isoform 2 inhibit EP300/CREBBP and PCAF-mediated acetylation of histones (HAT) and nucleosomes, most probably by masking the accessibility of lysines of histones to the acetylases. The predominant target for inhibition is histone H4. HAT inhibition leads to silencing of HAT-dependent transcription and prevents active demethylation of DNA. Both isoforms stimulate DNA replication of the adenovirus genome complexed with viral core proteins; however, isoform 2 specific activity is higher.

Rattus norvegicus (taxid: 10116)

>sp|Q9H2G4|TSYL2_HUMAN Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 123/206 (59%), Gaps = 16/206 (7%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           E NAE+++S L    + L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 206 ERNAERMESIL----QALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 261

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 262 IPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 321

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEK 192
            + K F   +  G +   +T I+W  G   P    H   GN+   A  SFF+WFS+    
Sbjct: 322 VIVKEFQ-RNRSGRLVSHSTPIRWHRGQE-PQARRH---GNQD--ASHSFFSWFSNHSLP 374

Query: 193 DTIDGIQDEVAEIIKEDLWPNPLTYF 218
           +      D +AEIIK DLW NPL Y+
Sbjct: 375 EA-----DRIAEIIKNDLWVNPLRYY 395

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Homo sapiens (taxid: 9606)

>sp|Q8N831|TSYL6_HUMAN Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 114/194 (58%), Gaps = 12/194 (6%)

Query: 25  LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISH 84
           L +  L+ IQ EL+ +N EA   +L+VE+++ +I +   ++RNDII++IP FW+TAF  H
Sbjct: 200 LHLNPLESIQLELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHH 259

Query: 85  PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDD 144
           P L  ++  +D ++  YL++LEV++ +  ++G    F F  NPYF +  + K +  +   
Sbjct: 260 PQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVYE-VRSF 318

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAE 204
           G +   +T I W+ G G P    H    N+  +   SFFTWFSD    ++     D +A+
Sbjct: 319 GQVVSFSTLIMWRRGHG-PQSFIHR---NRHVIC--SFFTWFSDHSLPES-----DRIAQ 367

Query: 205 IIKEDLWPNPLTYF 218
           IIKEDLW NPL Y+
Sbjct: 368 IIKEDLWSNPLQYY 381

Homo sapiens (taxid: 9606)

>sp|Q9BE64|TSYL2_MACFA Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 123/206 (59%), Gaps = 16/206 (7%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           + NAE+++S L    + L++IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 206 QRNAERMESIL----QALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 261

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L++  D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 262 IPGFWVKAFLNHPRIPILINRRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 321

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEK 192
            + K F   +  G +   +T I+W  G   P    H   GN+   A  SFF+WFS+    
Sbjct: 322 VIVKEFQ-RNRSGRLVSHSTPIRWHRGQE-PQARRH---GNQD--ASHSFFSWFSNHSLP 374

Query: 193 DTIDGIQDEVAEIIKEDLWPNPLTYF 218
           +      D +AEIIK DLW NPL Y+
Sbjct: 375 EA-----DRIAEIIKNDLWVNPLRYY 395

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Macaca fascicularis (taxid: 9541)

>sp|Q7TQI8|TSYL2_MOUSE Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 16/206 (7%)

Query: 13  EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
           E +A++++S L    + L+ IQ +LE +N +A +  L +++K+ ++R+P  ++R+ II+ 
Sbjct: 199 ERSAQRMESIL----QALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLIIQH 254

Query: 73  IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
           IP FW+ AF++HP +  L+++ D+ IFRYL++L+V+D + +  GY +   F  NPYF + 
Sbjct: 255 IPGFWVKAFLNHPRISILINQRDRDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNM 314

Query: 133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEK 192
            + K F   +  G +   +T I+W  G   P   N      +     ESFF WFS+    
Sbjct: 315 VIVKEFQ-RNRSGRLVSHSTPIRWHRGQE-PQAYNRRSHDTR-----ESFFNWFSNHSLP 367

Query: 193 DTIDGIQDEVAEIIKEDLWPNPLTYF 218
           +      D +AEIIK DLW NP+ Y+
Sbjct: 368 EA-----DRIAEIIKNDLWVNPVRYY 388

Part of the CASK/TRB1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly. May inhibit cell proliferation by inducing p53-dependent CDKN1A expression.

Mus musculus (taxid: 10090)

>sp|Q5R5G8|TSYL1_PONAB Testis-specific Y-encoded-like protein 1 OS=Pongo abelii GN=TSPYL1 PE=2 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 16/197 (8%)

Query: 24  VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFIS 83
            L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +
Sbjct: 227 ALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRN 286

Query: 84  HPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD 143
           HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +  
Sbjct: 287 HPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRS 345

Query: 144 DGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAE--ESFFTWFSDTQEKDTIDGIQDE 201
            G +   +T I W+ G        HE +   R   +   SFFTWFSD    ++     D+
Sbjct: 346 SGRVVSLSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DK 392

Query: 202 VAEIIKEDLWPNPLTYF 218
           +AEIIKEDLWPNPL Y+
Sbjct: 393 IAEIIKEDLWPNPLQYY 409

Pongo abelii (taxid: 9601)

>sp|Q9H0U9|TSYL1_HUMAN Testis-specific Y-encoded-like protein 1 OS=Homo sapiens GN=TSPYL1 PE=1 SV=3

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 16/197 (8%)

Query: 24  VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFIS 83
            L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +
Sbjct: 226 ALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRN 285

Query: 84  HPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD 143
           HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +  
Sbjct: 286 HPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRS 344

Query: 144 DGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAE--ESFFTWFSDTQEKDTIDGIQDE 201
            G +   +T I W+ G        HE +   R   +   SFFTWFSD    ++     D+
Sbjct: 345 SGRVVSLSTPIIWRRG--------HEPQSFIRRNQDLICSFFTWFSDHSLPES-----DK 391

Query: 202 VAEIIKEDLWPNPLTYF 218
           +AEIIKEDLWPNPL Y+
Sbjct: 392 IAEIIKEDLWPNPLQYY 408

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
225456743	268	PREDICTED: protein SET [Vitis vinifera]	0.927	0.858	0.804	1e-104
26451105	228	unknown protein [Arabidopsis thaliana] g	0.911	0.991	0.794	3e-97
356508564	261	PREDICTED: protein SET-like [Glycine max	0.883	0.839	0.792	6e-96
356516792	263	PREDICTED: protein SET-like isoform 1 [G	0.883	0.832	0.797	6e-96
6730705	255	Putative phospatase 2A inhibitor [Arabid	0.883	0.858	0.800	6e-96
225452785	255	PREDICTED: protein SET [Vitis vinifera]	0.879	0.854	0.790	1e-95
296082895	253	unnamed protein product [Vitis vinifera]	0.879	0.861	0.790	1e-95
255638203	263	unknown [Glycine max]	0.883	0.832	0.792	4e-95
224119088	242	nucleosome/chromatin assembly factor gro	0.927	0.950	0.764	1e-94
18394656	256	template-activating factor I [Arabidopsi	0.883	0.855	0.797	1e-94

>gi|225456743|ref|XP_002275632.1| PREDICTED: protein SET [Vitis vinifera] gi|297733991|emb|CBI15238.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/235 (80%), Positives = 216/235 (91%), Gaps = 5/235 (2%)

Query: 1   MVADKGKKTKV----EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK K     EE N++ ID +LVLSIEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKP+YDKRNDIIKSIPDFWLTAF+SHPALG+LLSEEDQKIF+YLSSLEVEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF+PNP+FED KL KTFTFL D+G  KI+ TSIKWK+GMGIPNGVNHEKKGNKRP
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFL-DEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRP 179

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDE 231
           +A+ SFF+WFS+TQ+KD +D I DE+AEIIKEDLWPNPLTYFN+EADEE+F+G++
Sbjct: 180 IADASFFSWFSETQQKDIMDDIHDEIAEIIKEDLWPNPLTYFNSEADEEDFDGED 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451105|dbj|BAC42657.1| unknown protein [Arabidopsis thaliana] gi|28950777|gb|AAO63312.1| At1g18800 [Arabidopsis thaliana]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/229 (79%), Positives = 206/229 (89%), Gaps = 3/229 (1%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTYFNNEADEEEF 227
           SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTYFNN+ADEEE 
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNNDADEEEL 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508564|ref|XP_003523025.1| PREDICTED: protein SET-like [Glycine max]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV +  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDII +IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKKGNKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516792|ref|XP_003527077.1| PREDICTED: protein SET-like isoform 1 [Glycine max]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG GIPNGVNHEKK NKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKGIPNGVNHEKKRNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6730705|gb|AAF27100.1|AC011809_9 Putative phospatase 2A inhibitor [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 177/221 (80%), Positives = 200/221 (90%), Gaps = 2/221 (0%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDEVAEIIKEDLWPNPLTYFNN 220
           SFFTWFSD Q K+ + D +QDEVA+IIKEDLWPNPLTYFNN
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEVADIIKEDLWPNPLTYFNN 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452785|ref|XP_002283325.1| PREDICTED: protein SET [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 200/224 (89%), Gaps = 6/224 (2%)

Query: 1   MVADKGKKTKVE----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK+KV     E++A+ ID ELVLSIEKLQE+QDELEK+NEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIR+PVY KRN+IIKSIPDFWLTAF+SHPAL +LLSEEDQKIF+YL SLEVEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSI FNF+ NPYFED KLTKTFTF  D+G+ KIT T+IKWKEGMG  NGVNH+KK NKRP
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFF-DEGTTKITGTAIKWKEGMGASNGVNHDKK-NKRP 178

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
            AEESFF WFS+TQ+KD ++G+QDEVAEIIKEDLWPNPL YFNN
Sbjct: 179 FAEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNN 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082895|emb|CBI22196.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 200/224 (89%), Gaps = 6/224 (2%)

Query: 1   MVADKGKKTKVE----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK+KV     E++A+ ID ELVLSIEKLQE+QDELEK+NEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKSKVSDRIVEDDADHIDGELVLSIEKLQELQDELEKVNEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIR+PVY KRN+IIKSIPDFWLTAF+SHPAL +LLSEEDQKIF+YL SLEVEDFKDVKSG
Sbjct: 61  EIRRPVYVKRNEIIKSIPDFWLTAFLSHPALCDLLSEEDQKIFKYLDSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSI FNF+ NPYFED KLTKTFTF D+ G+ KIT T+IKWKEGMG  NGVNH+KK NKRP
Sbjct: 121 YSIAFNFNQNPYFEDTKLTKTFTFFDE-GTTKITGTAIKWKEGMGASNGVNHDKK-NKRP 178

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
            AEESFF WFS+TQ+KD ++G+QDEVAEIIKEDLWPNPL YFNN
Sbjct: 179 FAEESFFAWFSETQQKDIMEGLQDEVAEIIKEDLWPNPLKYFNN 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638203|gb|ACU19415.1| unknown [Glycine max]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 199/222 (89%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEE--ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEI 58
           MVAD+ KK KV E  EN ++ID ELVLSIEKLQEIQDELEKINEEAS+KVLE+EQKY+EI
Sbjct: 1   MVADRSKKPKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEI 60

Query: 59  RKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118
           RKPVYDKRNDIIK+IPDFWLTAF+SHPALG+LL+EEDQKIF+YLSSLEVEDFKDVKSGYS
Sbjct: 61  RKPVYDKRNDIIKTIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYS 120

Query: 119 ITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLA 178
           ITFNF+ NPYFED KL KT+TFL ++G+ K+TAT IKWKEG  IPNGVNHEKK NKR   
Sbjct: 121 ITFNFNANPYFEDTKLVKTYTFL-EEGTTKVTATPIKWKEGKDIPNGVNHEKKRNKRAPT 179

Query: 179 EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220
           + SFF+WFSDT++KD ID I DEVAE+IK+DLWPNPLTYFNN
Sbjct: 180 DVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNN 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119088|ref|XP_002317982.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222858655|gb|EEE96202.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/238 (76%), Positives = 208/238 (87%), Gaps = 8/238 (3%)

Query: 1   MVAD-KGKKTKVEE---ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVAD KGKK KV E   E+  QID EL+L+IEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADNKGKKLKVAEKGEEDNSQIDEELILTIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKPVYDKRN+IIKSIPDFWLTAF+SHPALG LLSEEDQKIF++LSSLEVED KDVKSG
Sbjct: 61  EIRKPVYDKRNEIIKSIPDFWLTAFLSHPALGILLSEEDQKIFKFLSSLEVEDSKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF PNPYFE+ KL K+F F  D+G+ +ITAT I WKEGMG+PNGV+HE KGNKR 
Sbjct: 121 YSITFNFEPNPYFEETKLIKSFAF-HDEGTTEITATPISWKEGMGLPNGVSHENKGNKRL 179

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN---NEADEEEFEGDE 231
           LA+ESFF+WFS+TQ K  ID +QDEVAEIIKEDLWPNPL+YFN   ++ DEE+F+GDE
Sbjct: 180 LADESFFSWFSNTQPKGMIDDMQDEVAEIIKEDLWPNPLSYFNIVIDDPDEEDFDGDE 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394656|ref|NP_564063.1| template-activating factor I [Arabidopsis thaliana] gi|21555241|gb|AAM63812.1| putative SET protein, phospatase 2A inhibitor [Arabidopsis thaliana] gi|332191644|gb|AEE29765.1| template-activating factor I [Arabidopsis thaliana]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 200/222 (90%), Gaps = 3/222 (1%)

Query: 1   MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
           MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct: 1   MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query: 61  PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
           PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct: 61  PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query: 121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
           F+F+PNP+FED KLTKTFTFL ++G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct: 121 FSFNPNPFFEDGKLTKTFTFL-EEGTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query: 181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTYFNN 220
           SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTYFNN
Sbjct: 180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTYFNN 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2034995	256	NRP2 "AT1G18800" [Arabidopsis	0.870	0.843	0.794	4.5e-91
TAIR|locus:2019075	264	NRP1 "AT1G74560" [Arabidopsis	0.846	0.795	0.760	3.4e-84
ZFIN|ZDB-GENE-030131-433	275	setb "SET translocation (myelo	0.790	0.712	0.447	1.8e-46
UNIPROTKB|F1RR69	289	SET "Uncharacterized protein"	0.806	0.692	0.435	6.2e-46
UNIPROTKB|F2Z4L4	277	SET "Uncharacterized protein"	0.790	0.707	0.437	1.3e-45
FB|FBgn0014879	269	Set "Set" [Drosophila melanoga	0.806	0.743	0.439	1.6e-45
UNIPROTKB|Q5VXV2	268	SET "Protein SET" [Homo sapien	0.778	0.720	0.440	1.6e-45
MGI|MGI:1860267	289	Set "SET nuclear oncogene" [Mu	0.814	0.698	0.427	2.1e-45
RGD|1307467	289	Set "SET nuclear oncogene" [Ra	0.814	0.698	0.427	2.1e-45
UNIPROTKB|Q01105	290	SET "Protein SET" [Homo sapien	0.75	0.641	0.451	2.7e-45

TAIR|locus:2034995 NRP2 "AT1G18800" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 174/219 (79%), Positives = 197/219 (89%)

Query:     1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
             MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct:     1 MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query:    61 PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
             PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct:    61 PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query:   121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
             F+F+PNP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct:   121 FSFNPNPFFEDGKLTKTFTFLEE-GTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query:   181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTY 217
             SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTY
Sbjct:   180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTY 218

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0003682 "chromatin binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

TAIR|locus:2019075 NRP1 "AT1G74560" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 165/217 (76%), Positives = 192/217 (88%)

Query:     1 MVADKGKKTKVEE----ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
             MVADK KK+K+EE    EN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+
Sbjct:     1 MVADKSKKSKIEEKGEEENLEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYN 60

Query:    57 EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
              IRKPVYDKRN++I+SIP FW+TAF+SHPALG+LL+EEDQKIF+YL+SLEVED KDVKSG
Sbjct:    61 VIRKPVYDKRNEVIQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSG 120

Query:   117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHE-KKGNKR 175
             YSITF+F+ NP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+PNGVNH+ KKGNKR
Sbjct:   121 YSITFHFTSNPFFEDAKLTKTFTFLEE-GTTKITATPIKWKEGKGLPNGVNHDDKKGNKR 179

Query:   176 PLAEESFFTWFSDTQEK-DTIDGIQDEVAEIIKEDLW 211
              L EESFFTWF+D Q K D  D I DEVA+IIKEDLW
Sbjct:   180 ALPEESFFTWFTDAQHKEDAGDEIHDEVADIIKEDLW 216

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0003682 "chromatin binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=IGI

GO:0010311 "lateral root formation" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0042393 "histone binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

ZFIN|ZDB-GENE-030131-433 setb "SET translocation (myeloid leukemia-associated) B" [Danio rerio (taxid:7955)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 93/208 (44%), Positives = 139/208 (66%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIPN--GVNHEKKGNKRPLAE-ESFFTWFSDT 189
              L+K F  L++ G     +T IKWK G  +    G    K G KR   E ESFFTWF+D 
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKAGKDLTKRTGQTPNKAGKKRQHEEPESFFTWFTDH 196

Query:   190 QEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
                   D   DE+ E+IK+D+WPNPL Y
Sbjct:   197 S-----DAGADELGEVIKDDIWPNPLQY 219

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F1RR69 SET "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 91/209 (43%), Positives = 137/209 (65%)

Query:    12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK 71
             E  N  + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I 
Sbjct:    29 ETSNLPKEEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 88

Query:    72 SIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFED 131
              IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+
Sbjct:    89 KIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFEN 148

Query:   132 NKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSD 188
               L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D
Sbjct:   149 KVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTD 207

Query:   189 TQEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
                    D   DE+ E+IK+D+WPNPL Y
Sbjct:   208 HS-----DAGADELGEVIKDDIWPNPLQY 231

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F2Z4L4 SET "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 91/208 (43%), Positives = 138/208 (66%)

Query:    13 EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72
             +E +E+   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  
Sbjct:    21 DETSEKEQQE---AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK 77

Query:    73 IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDN 132
             IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+ 
Sbjct:    78 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137

Query:   133 KLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDT 189
              L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D 
Sbjct:   138 VLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH 196

Query:   190 QEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
                   D   DE+ E+IK+D+WPNPL Y
Sbjct:   197 S-----DAGADELGEVIKDDIWPNPLQY 219

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

FB|FBgn0014879 Set "Set" [Drosophila melanogaster (taxid:7227)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 95/216 (43%), Positives = 144/216 (66%)

Query:     9 TKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRND 68
             T     N E+ +SE   ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++
Sbjct:    19 TSAAAGNNEE-ESE---ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSE 74

Query:    69 IIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPY 128
             ++K IP+FW+T+FI+HP +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPY
Sbjct:    75 LVKRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPY 134

Query:   129 FEDNKLTKTFTF----LDDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--S 181
             FE+  LTK F        ++G     T+T IKWKEG  +   +  +  GNK+    E  +
Sbjct:   135 FENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKT 194

Query:   182 FFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
             FF WFSD       D + DE+AE+IK+DLWPNPL Y
Sbjct:   195 FFDWFSDNT-----DPVNDEIAELIKDDLWPNPLQY 225

GO:0005634 "nucleus" evidence=ISS

GO:0030332 "cyclin binding" evidence=NAS

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|Q5VXV2 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 89/202 (44%), Positives = 135/202 (66%)

Query:    19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWL 78
             ++ E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+
Sbjct:    15 LEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWV 74

Query:    79 TAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138
             T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F
Sbjct:    75 TTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF 134

Query:   139 TFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTI 195
               L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       
Sbjct:   135 -HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS----- 188

Query:   196 DGIQDEVAEIIKEDLWPNPLTY 217
             D   DE+ E+IK+D+WPNPL Y
Sbjct:   189 DAGADELGEVIKDDIWPNPLQY 210

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

MGI|MGI:1860267 Set "SET nuclear oncogene" [Mus musculus (taxid:10090)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/215 (42%), Positives = 142/215 (66%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESF 182
             NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESF
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESF 201

Query:   183 FTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
             FTWF+D       D   DE+ E+IK+D+WPNPL Y
Sbjct:   202 FTWFTDHS-----DAGADELGEVIKDDIWPNPLQY 231

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1307467 Set "SET nuclear oncogene" [Rattus norvegicus (taxid:10116)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/215 (42%), Positives = 142/215 (66%)

Query:    10 KVEEENAE----QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65
             K+E+++A     + + E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + K
Sbjct:    23 KLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 82

Query:    66 RNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSP 125
             R+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I F F  
Sbjct:    83 RSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDE 142

Query:   126 NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESF 182
             NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESF
Sbjct:   143 NPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESF 201

Query:   183 FTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTY 217
             FTWF+D       D   DE+ E+IK+D+WPNPL Y
Sbjct:   202 FTWFTDHS-----DAGADELGEVIKDDIWPNPLQY 231

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

UNIPROTKB|Q01105 SET "Protein SET" [Homo sapiens (taxid:9606)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/195 (45%), Positives = 132/195 (67%)

Query:    26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
             +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct:    44 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 103

Query:    86 ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
              +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  L++ G
Sbjct:   104 QVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESG 162

Query:   146 SMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                  +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct:   163 DPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 217

Query:   203 AEIIKEDLWPNPLTY 217
              E+IK+D+WPNPL Y
Sbjct:   218 GEVIKDDIWPNPLQY 232

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0042393 "histone binding" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=NAS

GO:0035067 "negative regulation of histone acetylation" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0004864 "protein phosphatase inhibitor activity" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IGI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020937001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (255 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017697001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (86 aa)				•					0.608
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.595
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•					0.544
	GSVIVG00017910001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)				•					0.516
	GSVIVG00014203001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (151 aa)				•					0.503
	GSVIVG00000534001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (338 aa)				•					0.501
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.496
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•					0.488
	GSVIVG00002607001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (114 aa)				•			•		0.473
	GSVIVG00014439001	RecName- Full=Diphthine synthase; EC=2.1.1.98;; Required for the methylation step in diphthamid [...] (285 aa)				•					0.471

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	9e-52
PTZ00008	185	PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr	1e-25
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	2e-20

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  167 bits (426), Expect = 9e-52
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 37/234 (15%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------- 70
            +E L+ +Q EL+++  +  E+VLE+E+KY ++ +P+YDKR +II               
Sbjct: 3   RVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEPE 62

Query: 71  -KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYF 129
            K IP FWLTA  +HP L E+++E D++  +YL+ + VE  +D K G+ + F+F+PNPYF
Sbjct: 63  EKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPYF 122

Query: 130 EDNKLTKTFTFLDDDGS--MKITATSIKWKEGM-----GIPNGVNHEKKGNKRPLAE--- 179
            +  LTKT+   D+     +K   T I+WKEG       +     ++K G  R + +   
Sbjct: 123 TNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRTITKTVP 182

Query: 180 -ESFFTWFSDTQEKDTIDG----------IQDEVAEIIKEDLWPNPLTYFNNEA 222
            ESFF +FS  +  D  D           +  E+ EIIK+DL P  L Y+  EA
Sbjct: 183 AESFFNFFSPPKVPDDDDDDDEELEEELELDYEIGEIIKDDLIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional

 Score = 99.1 bits (247), Expect = 1e-25
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 38  EKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQK 97
            +++EE +++ + +++++ E +KP+++KR +II+ IP FW      HPAL  L+  ED  
Sbjct: 1   MELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALSYLVP-EDID 59

Query: 98  IFRYLSSLEVEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIK 155
           I  +L  +++ED  D    Y IT  F      + E   L K   F  ++    +  T IK
Sbjct: 60  ILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIF-KNNQEKVVEVTKIK 118

Query: 156 WKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPL 215
           WKEG          +          S F WF++ + +D  D     V EII+ ++W  PL
Sbjct: 119 WKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQDRPD-----VGEIIRREIWHAPL 173

Query: 216 TYFNNEADEEEF 227
            Y+ +    ++ 
Sbjct: 174 LYYLDTVSIDDE 185

Length = 185

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 43/270 (15%)

Query: 7   KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66
              ++++E    +  E   +++KLQ +Q E + +  E + ++ ++  KY ++  P+YDKR
Sbjct: 23  DSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKR 82

Query: 67  NDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-S 115
            + +            +P FWLTA  ++  LG  + E D+ I  YLS +  E  +  K  
Sbjct: 83  KEALVQNGGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQE 142

Query: 116 GYSITFNFSPNPYFEDNKLTKTFTFLDDDGS-----MKITATSIKWKEGMGIPNGVNHEK 170
           G+ + F F+PNP+F +  LTKT+     DG          AT I WK+G  +   V  +K
Sbjct: 143 GFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEIDWKQGKDVTKKVVTKK 202

Query: 171 KGNKRP---------LAEESFFTWFSDTQEKDTIDGIQD-----------------EVAE 204
           + +K+          +  ESFF +F+   E  + + ++                  E+  
Sbjct: 203 QRHKKTKETRTVTETVDRESFFNFFTS-HEVPSDEELEKMSKHEIAELEMIVETDYEIGI 261

Query: 205 IIKEDLWPNPLTYFNNEADEEEFEGDEEVN 234
            I++ L P  + +F  EA +E+ +   + +
Sbjct: 262 TIRDKLIPYAVYWFLGEAIDEDSDYSSDED 291

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	100.0
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	95.46
PF07352	149	Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I	90.47
COG4396	170	Mu-like prophage host-nuclease inhibitor protein G	86.06

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=2.2e-58  Score=421.12  Aligned_cols=219  Identities=30%  Similarity=0.593  Sum_probs=191.0

Q ss_pred             ccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------ccchhhHH
Q 025790           10 KVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLT   79 (248)
Q Consensus        10 ~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~----------~IP~FW~~   79 (248)
                      ..+++++..||+.++.++.+|+.||.++..++.++++++++|+++|.++++|+|++|++||+          +||+||++
T Consensus        26 ~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~  105 (337)
T PTZ00007         26 ELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLT  105 (337)
T ss_pred             ccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHH
Confidence            34557788999999999999999999999999999999999999999999999999999999          79999999


Q ss_pred             HHhhhhhhccccCcchHHhhcCcceeEEEEccCCC-cceEEEEEecCCCccccCeEEEEEEeeCCC---CCe--eeeecc
Q 025790           80 AFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GSM--KITATS  153 (248)
Q Consensus        80 vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~---g~~--~~~~t~  153 (248)
                      ||+||+.++.+|+++|++||+||+||+|++..+.. .||+|+|+|++||||+|++|+|+|++...+   |+.  .+++|+
T Consensus       106 vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~  185 (337)
T PTZ00007        106 AMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATE  185 (337)
T ss_pred             HHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeee
Confidence            99999999999999999999999999999887654 899999999999999999999999996423   332  468999


Q ss_pred             ccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCCc-----C-----------CchHHHHHHHhh
Q 025790          154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTI-----D-----------GIQDEVAEIIKE  208 (248)
Q Consensus       154 I~Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~fF~~~~~~~~~-----~-----------~~d~ei~~~i~~  208 (248)
                      |+||+||++|++...+|++++     |    +.+..|||+||+++..++..     +           +.|++||++|++
T Consensus       186 I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd  265 (337)
T PTZ00007        186 IDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRD  265 (337)
T ss_pred             ceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHH
Confidence            999999999998766554332     2    34678999999998766321     1           147799999999


Q ss_pred             ccccchhhhhccCCCCcccc
Q 025790          209 DLWPNPLTYFNNEADEEEFE  228 (248)
Q Consensus       209 ~i~p~av~yf~~~~~~~~~~  228 (248)
                      +|||+||.||+|++.+++.+
T Consensus       266 ~IIP~AV~yftGea~d~~~~  285 (337)
T PTZ00007        266 KLIPYAVYWFLGEAIDEDSD  285 (337)
T ss_pred             hcccccHHhhCCCccccccc
Confidence            99999999999997765553

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.6e-58  Score=410.87  Aligned_cols=217  Identities=32%  Similarity=0.620  Sum_probs=191.2

Q ss_pred             chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh---------------------
Q 025790           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------   70 (248)
Q Consensus        12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI---------------------   70 (248)
                      ..+++..||+.|++||.+|+.||.+.+.++.+|.+++++||+||.++++|||++|++||                     
T Consensus        64 ~s~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~  143 (358)
T KOG1507|consen   64 LSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEG  143 (358)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccc
Confidence            34788999999999999999999999999999999999999999999999999999999                     


Q ss_pred             --------------cccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEE
Q 025790           71 --------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTK  136 (248)
Q Consensus        71 --------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K  136 (248)
                                    +|||+||+|||+|+++++++|+++|++||+||+||++.+.+++..||+|.|+|++||||+|++|||
T Consensus       144 ~~~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTK  223 (358)
T KOG1507|consen  144 NLAEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTK  223 (358)
T ss_pred             ccccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceee
Confidence                          269999999999999999999999999999999999999988679999999999999999999999


Q ss_pred             EEEee---CCCCC------e--eeeeccccccCCCCCCCccccccCCC-----C----ccccccccccccccCCCCCCc-
Q 025790          137 TFTFL---DDDGS------M--KITATSIKWKEGMGIPNGVNHEKKGN-----K----RPLAEESFFTWFSDTQEKDTI-  195 (248)
Q Consensus       137 ~~~~~---~~~g~------~--~~~~t~I~Wk~gk~~t~~~~~~k~~~-----~----r~~~~~SFF~fF~~~~~~~~~-  195 (248)
                      +|++.   +.+++      .  .|+||.|+|++|||+|.+...+|+++     .    ++++..||||||+++..++.. 
T Consensus       224 TY~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d  303 (358)
T KOG1507|consen  224 TYFLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEED  303 (358)
T ss_pred             eeeeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccc
Confidence            99998   32333      3  36999999999999999876554322     1    246889999999999988322 


Q ss_pred             -CC--------chHHHHHHHhhccccchhhhhccCCCCcccc
Q 025790          196 -DG--------IQDEVAEIIKEDLWPNPLTYFNNEADEEEFE  228 (248)
Q Consensus       196 -~~--------~d~ei~~~i~~~i~p~av~yf~~~~~~~~~~  228 (248)
                       ++        .|++||+.||+.|+|.||.||+|++.+++++
T Consensus       304 ~Ded~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~~~  345 (358)
T KOG1507|consen  304 LDEDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDEDD  345 (358)
T ss_pred             cCchHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccccc
Confidence             11        4699999999999999999999997555443

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=3e-54  Score=366.18  Aligned_cols=181  Identities=29%  Similarity=0.597  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceE
Q 025790           39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS  118 (248)
Q Consensus        39 ~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~  118 (248)
                      +|+.++.+|+++|+++|+++++|+|++|++||++||+||++||+|||.++ +|++.|+++|+||+||+|+...+++.||+
T Consensus         2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~   80 (185)
T PTZ00008          2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK   80 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence            47889999999999999999999999999999999999999999999999 99999999999999999997555578999


Q ss_pred             EEEEecC--CCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCccccccccccccccCCCCCCcC
Q 025790          119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID  196 (248)
Q Consensus       119 l~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~fF~~~~~~~~~~  196 (248)
                      |+|+|++  ||||+|++|+|+|++.. +++.++++|+|+||+|+|+|.+..+++...++..+..|||+||+++..+    
T Consensus        81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~----  155 (185)
T PTZ00008         81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ----  155 (185)
T ss_pred             EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence            9999965  89999999999999987 6667889999999999999987655433233456779999999987543    


Q ss_pred             CchHHHHHHHhhccccchhhhhccCCCCcc
Q 025790          197 GIQDEVAEIIKEDLWPNPLTYFNNEADEEE  226 (248)
Q Consensus       197 ~~d~ei~~~i~~~i~p~av~yf~~~~~~~~  226 (248)
                       .+++||++|+++|||+||+||+|++.+++
T Consensus       156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~~  184 (185)
T PTZ00008        156 -DRPDVGEIIRREIWHAPLLYYLDTVSIDD  184 (185)
T ss_pred             -CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence             57999999999999999999999876654

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=4.8e-53  Score=373.60  Aligned_cols=198  Identities=41%  Similarity=0.779  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc-------------------cchhhHHHHhhh
Q 025790           24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH   84 (248)
Q Consensus        24 ~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~-------------------IP~FW~~vl~n~   84 (248)
                      ++++.+|+.||.+++.++.++.+++++|+++|+++++|+|++|++||++                   ||+||++||.||
T Consensus         1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~   80 (244)
T PF00956_consen    1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH   80 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence            4789999999999999999999999999999999999999999999999                   999999999999


Q ss_pred             hhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCC------eeeeeccccccC
Q 025790           85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE  158 (248)
Q Consensus        85 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~  158 (248)
                      +.++.+|++.|.++|+||+||+|++..++..+|+|+|+|++||||+|++|+|+|++.. .+.      .++++|+|+||+
T Consensus        81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~  159 (244)
T PF00956_consen   81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP  159 (244)
T ss_dssp             HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred             chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence            9999999999999999999999999988789999999999999999999999999988 443      789999999999


Q ss_pred             CCCCCCccccccCCCC---------ccccccccccccccCCCCCCc----C--------CchHHHHHHHhhccccchhhh
Q 025790          159 GMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTI----D--------GIQDEVAEIIKEDLWPNPLTY  217 (248)
Q Consensus       159 gk~~t~~~~~~k~~~~---------r~~~~~SFF~fF~~~~~~~~~----~--------~~d~ei~~~i~~~i~p~av~y  217 (248)
                      |+++|.+...++++.+         .....+|||+||+++..+++.    +        ..+++||++|+++|||+||.|
T Consensus       160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y  239 (244)
T PF00956_consen  160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY  239 (244)
T ss_dssp             TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence            9999988765543221         234668999999977554211    1        147899999999999999999


Q ss_pred             hccCC
Q 025790          218 FNNEA  222 (248)
Q Consensus       218 f~~~~  222 (248)
                      |+|++
T Consensus       240 y~gea  244 (244)
T PF00956_consen  240 YTGEA  244 (244)
T ss_dssp             HHTCT
T ss_pred             hCCCC
Confidence            99975

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=100.00  E-value=1.8e-33  Score=250.50  Aligned_cols=208  Identities=45%  Similarity=0.834  Sum_probs=185.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcc
Q 025790           15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE   94 (248)
Q Consensus        15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~   94 (248)
                      -+...+.+++.+++.|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|...
T Consensus        22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~  101 (260)
T KOG1508|consen   22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE  101 (260)
T ss_pred             ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence            34557788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCC
Q 025790           95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK  174 (248)
Q Consensus        95 D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~  174 (248)
                      |.+++.||..+.|+.+.+...||++.|+|.+||||+|.+++|+|.+.. .|.+++.+|+|.|+.|+++........-+++
T Consensus       102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k  180 (260)
T KOG1508|consen  102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK  180 (260)
T ss_pred             hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence            999999999999999998899999999999999999999999999998 7888899999999999998765442212233


Q ss_pred             ccccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhccCCCCcccc
Q 025790          175 RPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFE  228 (248)
Q Consensus       175 r~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~~~~~~~~  228 (248)
                      +.....|||.||+.+..++     .++|+++|++.+||++++||+..+++...+
T Consensus       181 ~~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~~~  229 (260)
T KOG1508|consen  181 NGDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEASE  229 (260)
T ss_pred             cCcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhcccccccccc
Confidence            4456689999999998774     348999999999999999999776544433

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=95.46  E-value=0.053  Score=36.28  Aligned_cols=37  Identities=27%  Similarity=0.567  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 025790           30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR   66 (248)
Q Consensus        30 L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR   66 (248)
                      +..||..+..|..++.+|+-++.+.|..+++|+.+.-
T Consensus        10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi   46 (49)
T PF11629_consen   10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI   46 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            5678899999999999999999999999999998653

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []

Probab=90.47  E-value=1  Score=36.91  Aligned_cols=56  Identities=18%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchh
Q 025790           21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (248)
Q Consensus        21 ~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~F   76 (248)
                      .++-.++..+.++|.++..++..+..++-++...|.....|+-.+...+-..|-.|
T Consensus         3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y   58 (149)
T PF07352_consen    3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY   58 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35668899999999999999999999999999999999999998877766666555

This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.

>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]

Probab=86.06  E-value=1.6  Score=35.73  Aligned_cols=61  Identities=18%  Similarity=0.370  Sum_probs=53.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhh
Q 025790           17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFW   77 (248)
Q Consensus        17 ~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW   77 (248)
                      ..--.+|...|..|-+||.+...|+.++..++-+++..|..+..|+-+.-..+-++|..|.
T Consensus        14 ~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC   74 (170)
T COG4396          14 AQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC   74 (170)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4445678899999999999999999999999999999999999999988777777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		9e-46
3kyp_A	193	Crystal Structure Of Nucleosome Assembly Protein S		7e-24
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		3e-13
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		6e-12
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		1e-11
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		6e-09
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		7e-09
2zd7_A	264	The Structure Of Vps75 (Vacuolar Protein Sorting-As		4e-04
3q33_B	232	Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPL		4e-04
3c9d_A	259	Crystal Structure Of Vps75 Length = 259		4e-04
3c9b_A	259	Crystal Structure Of Semet Vps75 Length = 259		4e-04
3dm7_A	234	Crystal Structure Of The Vps75 Histone Chaperone Le		7e-04

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 132/195 (67%), Gaps = 9/195 (4%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 31  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  +++ G
Sbjct: 91  QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG--MGIPNGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  M   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 150 DPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 204
Query: 203 AEIIKEDLWPNPLTY 217
            E+IK+D+WPNPL Y
Sbjct: 205 GEVIKDDIWPNPLQY 219

>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S (Pfnaps) Plasmodium Falciparum Length = 193

Iteration: 1
 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIVP-EDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119
Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQD--EV 202
               +  T IKWKEG      V H +      + + S F WF       T D +QD  +V
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWF-------TTDELQDKPDV 172
Query: 203 AEIIKEDLWPNPLTY 217
            E+I+ ++W NPL+Y
Sbjct: 173 GELIRREIWHNPLSY 187

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 20  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 79
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +  K   + K G+ ++F+F+PNP+F ++
Sbjct: 80  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPFFSNS 139
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 140 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 199
Query: 179 EESFFTWFS 187
            +SFF +F+
Sbjct: 200 RDSFFHFFT 208

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 10  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +  K   + K G+ ++F F+ NP+F ++
Sbjct: 70  FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 189
Query: 179 EESFFTWFS 187
            +SFF +F+
Sbjct: 190 RDSFFHFFT 198

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
           +++KL+  Q E      +   ++  + QKY ++  P+YDKR + +           ++P+
Sbjct: 54  TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 76  FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDF---KDVKSGYSITFNFSPNPYFEDN 132
           FWL A  ++  +  ++ + D++I  YL+ +  +     K+ K G+ ++F F+ NP+F ++
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
            LTKT+    +D D     +   AT I W +   I   N V  +   N R        + 
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 233
Query: 179 EESFFTWFS 187
            +SFF +F+
Sbjct: 234 RDSFFHFFT 242

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 41  NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
            +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  
Sbjct: 80  GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 139
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDG 145
           YL  + +E   D + G+ + F F  S NP+F ++ L KT+ +  + G
Sbjct: 140 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 186

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 41  NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
            +E  E + E E    E  K   D   + +K IP FWLTA  + P + + +++ D ++  
Sbjct: 153 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 212
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTF 140
           YL  + +E   D + G+ + F F  S NP+F ++ L KT+ +
Sbjct: 213 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFY 254

>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein Sorting-Associated Protein 75) Length = 264

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 31/205 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTY 217
             +    D +A +  E+++P  + Y
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKY 215

>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation Length = 232

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 31/205 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTY 217
             +    D +A +  E+++P  + Y
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKY 215

>pdb|3C9D|A Chain A, Crystal Structure Of Vps75 Length = 259

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 31/205 (15%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
           K    +  ++VE      +  D +  +SITF+F      F++ ++TK F         +D
Sbjct: 78  KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
           G +      I+W +               P G    ++G K      + F WF  T  K 
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTY 217
             +    D +A +  E+++P  + Y
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKY 215

>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75 Length = 259

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 18  LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97  KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
           K    +  ++VE         D +D    +SITF+F      F++ ++TK F        
Sbjct: 78  KYIDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 133
Query: 142 DDDGSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQ 190
            +DG +      I+W +               P G    ++G K      + F WF  T 
Sbjct: 134 QEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGXK------TIFGWFRWTG 187
Query: 191 EKDTIDGIQ-DEVAEIIKEDLWPNPLTY 217
            K   +    D +A +  E+++P  + Y
Sbjct: 188 LKPGKEFPHGDSLASLFSEEIYPFCVKY 215

>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone Length = 234

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 37  LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
           L K  EE      EVE       KPVY+KR+  I  I +FW      H +    +   D 
Sbjct: 20  LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 79
Query: 97  KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
           K    +  ++VE         D +D    +SITF+F      F++ ++TK F        
Sbjct: 80  KYXDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 135
Query: 142 DDDGSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQ 190
            +DG +      I+W +               P G    ++G K      + F WF  T 
Sbjct: 136 QEDGILTSEPVPIEWPQSYDSINPDLXKDKRSPEGKKKYRQGXK------TIFGWFRWTG 189
Query: 191 EKDTIDGIQ-DEVAEIIKEDLWPNPLTY 217
            K   +    D +A +  E+++P  + Y
Sbjct: 190 LKPGKEFPHGDSLASLFSEEIYPFCVKY 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	6e-56
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	2e-50
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	9e-45
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	3e-36
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	2e-34

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score =  177 bits (451), Expect = 6e-56
 Identities = 87/226 (38%), Positives = 139/226 (61%), Gaps = 12/226 (5%)

Query: 3   ADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIR 59
           A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R
Sbjct: 5   AAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLR 64

Query: 60  KPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSI 119
           +P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I
Sbjct: 65  QPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRI 124

Query: 120 TFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR---P 176
            F F  NPYFE+  L+K F   ++ G     +T IKWK G  +    +  +    R    
Sbjct: 125 DFYFDENPYFENKVLSKEFHM-NESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQH 183

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEA 222
              ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+    
Sbjct: 184 EEPESFFTWFTDHSDAG-----ADELGEVIKDDIWPNPLQYYLVPD 224

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score =  162 bits (411), Expect = 2e-50
 Identities = 59/199 (29%), Positives = 109/199 (54%), Gaps = 9/199 (4%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           ++  ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPA
Sbjct: 2   MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61

Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
           L +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++
Sbjct: 62  LSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119

Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAE 204
               +  T IKWKEG      V H +      + + S F WF+  + +D     + +V E
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQD-----KPDVGE 174

Query: 205 IIKEDLWPNPLTYFNNEAD 223
           +I+ ++W NPL+Y+    +
Sbjct: 175 LIRREIWHNPLSYYLGLEE 193

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score =  150 bits (379), Expect = 9e-45
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 24/233 (10%)

Query: 17  EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76
           ++ ++E   +   L + ++E++ I  E        E       KPVY+KR+  I  I +F
Sbjct: 5   QENENEHAKAFLGLAKCEEEVDAIEREV-------ELYRLNKMKPVYEKRDAYIDEIAEF 57

Query: 77  WLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKS-----GYSITFNFS-PNPYFE 130
           W      H +    +   D K    +  ++VE             +SITF+F      F+
Sbjct: 58  WKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFK 117

Query: 131 DNKLTKTFTFL-----DDDGSMKITATSIKWKEGMGIPNGVNHEKKGN-----KRPLAEE 180
           + ++TK F         +DG +      I+W +     N    + K +     K     +
Sbjct: 118 EQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK 177

Query: 181 SFFTWFSDTQEK-DTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEE 232
           + F WF  T  K        D +A +  E+++P  + Y+     + E E  E 
Sbjct: 178 TIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRDLEDEEGES 230

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score =  130 bits (328), Expect = 3e-36
 Identities = 58/273 (21%), Positives = 116/273 (42%), Gaps = 43/273 (15%)

Query: 3   ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPV 62
           + K +   + ++    +  E   +++KL+  Q E      +   ++  + QKY ++  P+
Sbjct: 31  SLKYRCFYLYDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPI 90

Query: 63  YDKRNDII----------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE---D 109
           YDKR + +           ++P+FWL A  ++  +  ++ + D++I  YL+ +  +    
Sbjct: 91  YDKRREALVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKK 150

Query: 110 FKDVKSGYSITFNFSPNPYFEDNKLTKTFTF-----LDDDGSMKITATSIKWKEGMGIPN 164
            K+ K G+ ++F F+ NP+F ++ LTKT+        ++   +   AT I W +   I  
Sbjct: 151 NKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILK 210

Query: 165 GVNHEKKGNKR---------PLAEESFFTWFS----------------DTQEKDTIDGIQ 199
               +K+ NK           +  +SFF +F+                +  + + I    
Sbjct: 211 KNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGD 270

Query: 200 DEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEE 232
            EVA  IKE + P  + Y+     E E      
Sbjct: 271 YEVALTIKERIIPYAVDYYLGIIIESESNSIVS 303

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score =  126 bits (318), Expect = 2e-34
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 30/236 (12%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
           I   ++ + E     +E  E + E E    E  K   D   + +K IP FWLTA  + P 
Sbjct: 139 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPI 198

Query: 87  LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITF--NFSPNPYFEDNKLTKTFTFLDDD 144
           + + +++ D ++  YL  + +E   D + G+ + F  + S NP+F ++ L KT+ +  + 
Sbjct: 199 VCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKEL 258

Query: 145 GSM------KITATSIKWKEGMGI----------PNGVNHEKKGNKRPLAEESFFTWFSD 188
           G              I WK+               N    + +  ++    ESFF +F  
Sbjct: 259 GYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDP 318

Query: 189 TQ------------EKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEE 232
            +            + +    +   + E +K+ L P  + +F   A E EFE DEE
Sbjct: 319 PKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFEEDEE 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	93.45
2p2u_A	171	HOST-nuclease inhibitor protein GAM, putative; str	90.0

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=2.4e-62  Score=426.57  Aligned_cols=215  Identities=42%  Similarity=0.828  Sum_probs=175.6

Q ss_pred             CCCCcccccccchhh-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccch
Q 025790            1 MVADKGKKTKVEEEN-----AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (248)
Q Consensus         1 ~~~~~~~~~~~~~e~-----~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~   75 (248)
                      |++|++|++|+.++.     ...++++++.+|.+|+.||.+++.+++++++|+++|+++|+++++|+|++|++||++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~   80 (225)
T 2e50_A            1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (225)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence            889999999998864     457889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCCeeeeecccc
Q 025790           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (248)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (248)
                      ||++||+||+.++.+|++.|+++|+||+||+|++.++++.||+|+|+|++||||+|++|+|+|++.. +|++++++|+|+
T Consensus        81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~  159 (225)
T 2e50_A           81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (225)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence            9999999999999999999999999999999999988789999999999999999999999999988 888889999999


Q ss_pred             ccCCCCCCCcccccc--CCCCcc-ccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhccC
Q 025790          156 WKEGMGIPNGVNHEK--KGNKRP-LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNE  221 (248)
Q Consensus       156 Wk~gk~~t~~~~~~k--~~~~r~-~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~  221 (248)
                      ||+|+++|.+...++  +|++|. .+..|||+||+++.++     .+++||++|+++||||||+||+..
T Consensus       160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~~  223 (225)
T 2e50_A          160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLVP  223 (225)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC-
T ss_pred             ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcCC
Confidence            999999998765433  244444 3468999999998765     358999999999999999999853

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=7.7e-59  Score=425.03  Aligned_cols=220  Identities=26%  Similarity=0.472  Sum_probs=171.6

Q ss_pred             chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------ccchhhHHHH
Q 025790           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF   81 (248)
Q Consensus        12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~----------~IP~FW~~vl   81 (248)
                      ..+++..||+.|+++|.+|+.||.++++++.++++++++|++||+++++|+|++|++||+          +||+||++||
T Consensus        40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl  119 (359)
T 3fs3_A           40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL  119 (359)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999998          8999999999


Q ss_pred             hhhhhhccccCcchHHhhcCcceeEEEEcc---CCCcceEEEEEecCCCccccCeEEEEEEeeCC--CCCe---eeeecc
Q 025790           82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS  153 (248)
Q Consensus        82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~--~g~~---~~~~t~  153 (248)
                      +||+.++.+|+++|+++|+||+||+|++..   +.+.||+|+|+|++||||+|++|+|+|++...  +|.+   .+++|+
T Consensus       120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~  199 (359)
T 3fs3_A          120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV  199 (359)
T ss_dssp             HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred             HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence            999999999999999999999999999863   55899999999999999999999999999752  2333   479999


Q ss_pred             ccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCCcC----------------CchHHHHHHHhh
Q 025790          154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKE  208 (248)
Q Consensus       154 I~Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~fF~~~~~~~~~~----------------~~d~ei~~~i~~  208 (248)
                      |+||+||++|++..++|++++     |    ..+..|||+||+++.++...+                +.|++||++|++
T Consensus       200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd  279 (359)
T 3fs3_A          200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKE  279 (359)
T ss_dssp             CCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHh
Confidence            999999999987655443322     2    246799999999998764211                147889999999


Q ss_pred             ccccchhhhhccCCCCccccccc
Q 025790          209 DLWPNPLTYFNNEADEEEFEGDE  231 (248)
Q Consensus       209 ~i~p~av~yf~~~~~~~~~~~~~  231 (248)
                      +|||+||+||+|++.++++++-+
T Consensus       280 ~IiP~av~yftGea~e~e~~~~~  302 (359)
T 3fs3_A          280 RIIPYAVDYYLGIIIESESNSIV  302 (359)
T ss_dssp             THHHHHHHHHTTCC---------
T ss_pred             ceecChHHhhCCcccccccCCcc
Confidence            99999999999998877766553

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=6.4e-58  Score=428.23  Aligned_cols=212  Identities=26%  Similarity=0.565  Sum_probs=186.5

Q ss_pred             chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh---------------------
Q 025790           12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------   70 (248)
Q Consensus        12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI---------------------   70 (248)
                      +.+|+.+||+.|+++|.+|+.||.++..++.++++++++|++||.++++|||++|++||                     
T Consensus        81 ~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~  160 (417)
T 2ayu_A           81 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESL  160 (417)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchh
Confidence            45788999999999999999999999999999999999999999999999999999998                     


Q ss_pred             ----------------------cccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEe--cCC
Q 025790           71 ----------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPN  126 (248)
Q Consensus        71 ----------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~~N  126 (248)
                                            ++||+||++||+||+.|+.+|+++|++||+||+||+|++..+.+.||+|+|+|  .+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~N  240 (417)
T 2ayu_A          161 NETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN  240 (417)
T ss_dssp             TCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTC
T ss_pred             hhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCC
Confidence                                  58999999999999999999999999999999999999988778899999999  999


Q ss_pred             CccccCeEEEEEEeeCC---CCCe---eeeeccccccC-CCCCCCccccccCCC-----Ccc----ccccccccccccCC
Q 025790          127 PYFEDNKLTKTFTFLDD---DGSM---KITATSIKWKE-GMGIPNGVNHEKKGN-----KRP----LAEESFFTWFSDTQ  190 (248)
Q Consensus       127 pyF~N~~L~K~~~~~~~---~g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r~----~~~~SFF~fF~~~~  190 (248)
                      |||+|++|||+|++...   +|+.   .++||+|+||+ |||+|.+..++|+++     .|+    .+..|||+||+++.
T Consensus       241 pYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~  320 (417)
T 2ayu_A          241 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPK  320 (417)
T ss_dssp             SSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSC
T ss_pred             ccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCC
Confidence            99999999999999863   2554   37999999999 999998776554332     232    45789999999988


Q ss_pred             CCCCc-C-----------CchHHHHHHHhhccccchhhhhccCCC
Q 025790          191 EKDTI-D-----------GIQDEVAEIIKEDLWPNPLTYFNNEAD  223 (248)
Q Consensus       191 ~~~~~-~-----------~~d~ei~~~i~~~i~p~av~yf~~~~~  223 (248)
                      .++.. +           ..|++||++|+++|||+||+||+|++.
T Consensus       321 ~p~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~  365 (417)
T 2ayu_A          321 IQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL  365 (417)
T ss_dssp             SCCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHH
T ss_pred             CCCccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccc
Confidence            76432 1           136799999999999999999999743

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=8.6e-58  Score=389.76  Aligned_cols=189  Identities=30%  Similarity=0.658  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeE
Q 025790           27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE  106 (248)
Q Consensus        27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~  106 (248)
                      +++|++||.+++.+++++++++++|++||+++++|+|++|++||++||+||++||+|||.++.++ +.|+++|+||+||+
T Consensus         2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~   80 (193)
T 3kyp_A            2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD   80 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence            57899999999999999999999999999999999999999999999999999999999999876 79999999999999


Q ss_pred             EEEccCCCcceEEEEEecC--CCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCcccccccccc
Q 025790          107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFT  184 (248)
Q Consensus       107 Ve~~~d~~~~f~l~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~  184 (248)
                      |++..+++.||+|+|+|++  ||||+|++|+|+|++.. +|+.++++|+|+||+|+|+|.+..++|+..++..+..|||+
T Consensus        81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~  159 (193)
T 3kyp_A           81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE  159 (193)
T ss_dssp             CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred             EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence            9988777899999999998  89999999999999988 78888999999999999999765444332233457799999


Q ss_pred             ccccCCCCCCcCCchHHHHHHHhhccccchhhhhccCC
Q 025790          185 WFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEA  222 (248)
Q Consensus       185 fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~~  222 (248)
                      ||+++.++     .+++||++|+++||||||+||+|+.
T Consensus       160 wF~~~~~~-----~~~eige~ikd~i~P~~l~yy~ge~  192 (193)
T 3kyp_A          160 WFTTDELQ-----DKPDVGELIRREIWHNPLSYYLGLE  192 (193)
T ss_dssp             TCCSSCCT-----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred             hcCCCCcC-----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence            99998865     5788999999999999999999964

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=2.8e-53  Score=377.54  Aligned_cols=195  Identities=24%  Similarity=0.401  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEE
Q 025790           29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE  108 (248)
Q Consensus        29 ~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve  108 (248)
                      +|..++.++..++.++.++.++++++|+++++|+|++|++||++||+||++||+||+.|+.+|+++|++||+||+||+|+
T Consensus        10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~   89 (264)
T 2zd7_A           10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVE   89 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEE
Confidence            45556666666666777777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ec-----cCCCcceEEEEEecC-CCccccCeEEEEEEeeCC-CC--C--eeeeeccccccCCCCC-CCccccccC---CC
Q 025790          109 DF-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKK---GN  173 (248)
Q Consensus       109 ~~-----~d~~~~f~l~F~F~~-NpyF~N~~L~K~~~~~~~-~g--~--~~~~~t~I~Wk~gk~~-t~~~~~~k~---~~  173 (248)
                      ++     .+.++||+|+|+|++ ||||+|++|+|+|++... +|  .  .++++|+|+||+|+++ +.+...+|+   ++
T Consensus        90 ~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~  169 (264)
T 2zd7_A           90 WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGK  169 (264)
T ss_dssp             EGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHH
T ss_pred             EecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccc
Confidence            96     567899999999999 999999999999999862 23  3  7789999999997654 443332221   11


Q ss_pred             Cc-cccccccccccccCCCCCCc-CCchHHHHHHHhhccccchhhhhccCCC
Q 025790          174 KR-PLAEESFFTWFSDTQEKDTI-DGIQDEVAEIIKEDLWPNPLTYFNNEAD  223 (248)
Q Consensus       174 ~r-~~~~~SFF~fF~~~~~~~~~-~~~d~ei~~~i~~~i~p~av~yf~~~~~  223 (248)
                      ++ .....|||+||+++..++.. ...+++||++|+++||||||+||+|+..
T Consensus       170 ~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~  221 (264)
T 2zd7_A          170 KKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQR  221 (264)
T ss_dssp             HHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhccccc
Confidence            11 13457999999998766432 2368999999999999999999997633

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=93.45  E-value=0.19  Score=33.02  Aligned_cols=37  Identities=24%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 025790           30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR   66 (248)
Q Consensus        30 L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR   66 (248)
                      +..|+..+..++.++++|+-++.+.|..+++|+.+.-
T Consensus        12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi   48 (51)
T 2jo8_A           12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            4567888899999999999999999999999998653

>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1

Probab=90.00  E-value=0.63  Score=37.99  Aligned_cols=59  Identities=12%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchh
Q 025790           18 QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF   76 (248)
Q Consensus        18 ~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~F   76 (248)
                      .--.++-.++..+.+++.++..++..+..++-.+...|.+..+|+-.+...+-..|..|
T Consensus        13 ~~~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y   71 (171)
T 2p2u_A           13 ADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF   71 (171)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466889999999999999999999999999999999999999998888877777666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	6e-60
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	2e-42

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  186 bits (474), Expect = 6e-60
 Identities = 87/224 (38%), Positives = 140/224 (62%), Gaps = 12/224 (5%)

Query: 1   MVADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSE 57
             A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY++
Sbjct: 3   AQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62

Query: 58  IRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGY 117
           +R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY
Sbjct: 63  LRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGY 122

Query: 118 SITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPL 177
            I F F  NPYFE+  L+K F  +++ G     +T IKWK G  +    +  +    R  
Sbjct: 123 RIDFYFDENPYFENKVLSKEF-HMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKR 181

Query: 178 AE---ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+
Sbjct: 182 QHEEPESFFTWFTDHSDAGA-----DELGEVIKDDIWPNPLQYY 220

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  143 bits (363), Expect = 2e-42
 Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 73/275 (26%)

Query: 27  IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------- 70
           +  L+ +Q EL ++ +E   ++ E+E K+ +  KP++++R+ II                
Sbjct: 27  LLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQE 86

Query: 71  ---------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLS 103
                                      K IP FWLTA  + P + + +++ D ++  YL 
Sbjct: 87  IVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQ 146

Query: 104 SLEVEDFKDVKSGYSIT--FNFSPNPYFEDNKLTKTFTFLDDDGSM------KITATSIK 155
            + +E   D + G+ +   F+ S NP+F ++ L KT+ +  + G              I 
Sbjct: 147 DIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 206

Query: 156 WKEGMGI----------PNGVNHEKKGNKRPLAEESFFTWFSDTQEKDT----------- 194
           WK+               N    + +  ++    ESFF +F   + ++            
Sbjct: 207 WKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLE 266

Query: 195 -IDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFE 228
               +   + E +K+ L P  + +F   A E EFE
Sbjct: 267 ERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFE 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-60  Score=410.59  Aligned_cols=214  Identities=42%  Similarity=0.828  Sum_probs=170.3

Q ss_pred             CCCCcccccccc-----hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccch
Q 025790            1 MVADKGKKTKVE-----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (248)
Q Consensus         1 ~~~~~~~~~~~~-----~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~   75 (248)
                      ||||++|..+..     +.+.+.++.+++.+|.+|+.||.+++.++.++++++++++++|+++++|+|++|++||++||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~   80 (222)
T d2e50a1           1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (222)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCccccccchhcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc
Confidence            777777655443     245678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCCeeeeecccc
Q 025790           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (248)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (248)
                      ||++||+||+.++.+|++.|+++|+||+||+|++.+++..||+|+|+|++||||+|++|+|+|+++. +|.++++||+|+
T Consensus        81 FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~-~~~~~~~~t~I~  159 (222)
T d2e50a1          81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (222)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecC-CCCcccccccce
Confidence            9999999999999999999999999999999999988889999999999999999999999999988 888899999999


Q ss_pred             ccCCCCCCCccccccCCC---CccccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhcc
Q 025790          156 WKEGMGIPNGVNHEKKGN---KRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN  220 (248)
Q Consensus       156 Wk~gk~~t~~~~~~k~~~---~r~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~  220 (248)
                      ||+|+++|.+..+++++.   .......|||+||+++..+     .+++||++|+++|||+||.||+.
T Consensus       160 Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~-----~~deI~~~i~d~i~p~av~yyL~  222 (222)
T d2e50a1         160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV  222 (222)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred             ecCCCccccccccccccCccccccCCCCChhhcCCCCCCC-----CchHHHHHHHhhhchhhhHhhcC
Confidence            999999998765443221   2234668999999998765     45789999999999999999983

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-57  Score=405.34  Aligned_cols=219  Identities=27%  Similarity=0.548  Sum_probs=189.2

Q ss_pred             ccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh-------------------
Q 025790           10 KVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII-------------------   70 (248)
Q Consensus        10 ~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI-------------------   70 (248)
                      +.+.+|++.||+.|+++|.||+.||.++.+++.++++++++|+++|.++++|+|++|++||                   
T Consensus        10 ~~~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE~~~~~~~~e   89 (301)
T d2ayua1          10 GQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVE   89 (301)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHH
T ss_pred             cCCcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHHhhccccccc
Confidence            3467899999999999999999999999999999999999999999999999999999999                   


Q ss_pred             ------------------------cccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEe--c
Q 025790           71 ------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--S  124 (248)
Q Consensus        71 ------------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~  124 (248)
                                              ++||+||++||+||+.++.+|+++|+++|+||+||+|++..++..||+|+|+|  +
T Consensus        90 ~~~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~  169 (301)
T d2ayua1          90 SLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSS  169 (301)
T ss_dssp             HTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTT
T ss_pred             ccchhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecC
Confidence                                    48999999999999999999999999999999999999998878899999999  6


Q ss_pred             CCCccccCeEEEEEEeeCC---CCC---eeeeeccccccC-CCCCCCccccccCCC-----Cc----ccccccccccccc
Q 025790          125 PNPYFEDNKLTKTFTFLDD---DGS---MKITATSIKWKE-GMGIPNGVNHEKKGN-----KR----PLAEESFFTWFSD  188 (248)
Q Consensus       125 ~NpyF~N~~L~K~~~~~~~---~g~---~~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r----~~~~~SFF~fF~~  188 (248)
                      |||||+|++|+|+|++...   +++   ..++||+|+||+ |+++|.+...+|+++     .|    ..+..|||+||++
T Consensus       170 ~N~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~fF~~  249 (301)
T d2ayua1         170 ANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDP  249 (301)
T ss_dssp             TCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSC
T ss_pred             CCCCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCcCCCC
Confidence            8999999999999999762   232   247999999999 578887655443322     22    2456799999998


Q ss_pred             CCCCCCcC------------CchHHHHHHHhhccccchhhhhccCCCCcccc
Q 025790          189 TQEKDTID------------GIQDEVAEIIKEDLWPNPLTYFNNEADEEEFE  228 (248)
Q Consensus       189 ~~~~~~~~------------~~d~ei~~~i~~~i~p~av~yf~~~~~~~~~~  228 (248)
                      +..+++..            ..|++||..|+++|||+||.||+|++.+++.|
T Consensus       250 ~~~~~~~~~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~~~~~~  301 (301)
T d2ayua1         250 PKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFE  301 (301)
T ss_dssp             SCSCCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHHC
T ss_pred             CCCCCccccchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhhhcccC
Confidence            87764321            14678999999999999999999998877653