Citrus Sinensis ID: 025795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Secondary Structure (PSIPRED)
ccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEccccHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccEcHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgyaqlvigpagsgkstycsslYRHCEtvrrtmhivnldpaaenfdypvaMDIRELISLEDVMeelglgpngglIYCMEHLEDNLDDWLAEELDnyldddylvfdcpgqielfthvpVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLElphvnilskmDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDeysmvsfmpldLRKESRRLLSQIMKMSYS
Flexible Loop (DISEMBL)
mgyaqlvigpagsgkstyCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Low Complexity Region (SEG)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWlaeeldnyldddylVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Disordered region (IsUnstruct)
*****LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL*****************
Disordered Region (DISOPRED)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Disordered Region (DISEMBL)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Disordered Region (DISPRO)
*GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRLLSQIMKMSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q6CQA6	271	GPN-loop GTPase 3 homolog	yes	no	0.907	0.830	0.554	8e-73
Q6ZM63	285	GPN-loop GTPase 3 OS=Dani	yes	no	0.927	0.807	0.544	2e-72
Q54NK8	285	GPN-loop GTPase 3 homolog	yes	no	0.955	0.831	0.522	4e-72
Q6BI59	274	GPN-loop GTPase 3 homolog	yes	no	0.919	0.832	0.555	5e-72
Q6FSS0	271	GPN-loop GTPase 3 homolog	yes	no	0.899	0.822	0.550	2e-71
Q4V7Z0	285	GPN-loop GTPase 3 OS=Xeno	N/A	no	0.927	0.807	0.544	5e-71
Q9D3W4	284	GPN-loop GTPase 3 OS=Mus	yes	no	0.927	0.809	0.548	6e-71
Q5A0W6	273	GPN-loop GTPase 3 homolog	N/A	no	0.927	0.842	0.544	9e-71
Q6R518	284	GPN-loop GTPase 3 OS=Ratt	yes	no	0.927	0.809	0.548	1e-70
Q06543	272	GPN-loop GTPase 3 homolog	yes	no	0.899	0.819	0.545	3e-70

>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2

 Score =  273 bits (698), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 128/231 (55%), Positives = 179/231 (77%), Gaps = 6/231 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG+GKST+C+++  H +++ R  HIVNLDPAAE   Y   +DIR+LISLEDVMEE
Sbjct: 7   LVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTIDIRDLISLEDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
            GLGPNG LIYC E+L +NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  FGLGPNGSLIYCFEYLLNNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
           L+++ NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DLV    NK
Sbjct: 125 LQNQLNFNLCATYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINILSKLDLVKDSHNK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR 232
           K ++ +LNP+   L  ++N+   P+F KLN+++  LVD++ MV F+PL+ +
Sbjct: 185 KALKKFLNPDPLLLTDKVNEETNPKFHKLNEAIANLVDDFGMVQFLPLEAK 235

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6ZM63|GPN3_DANRE GPN-loop GTPase 3 OS=Danio rerio GN=gpn3 PE=2 SV=2

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 182/237 (76%), Gaps = 7/237 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYC+++  HC+ + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGLI+CME+  +N D WL E L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT- 179
             V+ L+   F VC V+L+DSQF+ +  KFISG MA+LSAMV LE+P VNI++KMDL++ 
Sbjct: 122 QLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSP 181

Query: 180 -NKKEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             KKEIE YL+P+   ++ + +  + + +F+KL K++  L+D+YSMV F+P D   E
Sbjct: 182 KAKKEIEKYLDPDMYSMMEDNSVALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDE 238

Danio rerio (taxid: 7955)

>sp|Q54NK8|GPN3_DICDI GPN-loop GTPase 3 homolog OS=Dictyostelium discoideum GN=gpn3 PE=3 SV=1

 Score =  271 bits (692), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/243 (52%), Positives = 192/243 (79%), Gaps = 6/243 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           + QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++++V
Sbjct: 4   HVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTVDEV 63

Query: 63  MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
           M+EL  GPNGGL+Y ME+L +N+ DWL +EL +Y +DDYL+ DCPGQIEL++H+PV+R  
Sbjct: 64  MDELHYGPNGGLVYAMEYLIENM-DWLTDELGDY-EDDYLIIDCPGQIELYSHIPVMRIL 121

Query: 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK- 181
           VDHL+   ++VC+V+L+DSQFI D  KFISG +  LSAMV+LE+PH+N+L+K+D++    
Sbjct: 122 VDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLKTSD 181

Query: 182 --KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESRRL 238
             KEIE +L+ E Q L+ ELN     ++ ++NK++  L++++S+V F+PLD+  +ES  +
Sbjct: 182 QYKEIEKFLDLEVQNLVEELNLETHDRYHRMNKAIGSLLEDFSLVGFVPLDITDQESLNV 241

Query: 239 LSQ 241
           L Q
Sbjct: 242 LLQ 244

Dictyostelium discoideum (taxid: 44689)

>sp|Q6BI59|GPN3_DEBHA GPN-loop GTPase 3 homolog DEHA2G13222g OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2G13222g PE=3 SV=2

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 178/234 (76%), Gaps = 6/234 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           L +GPAG GKST+C+S+  H +++ R  HIVNLDPAAE  +Y   +DIR+LISL+DVMEE
Sbjct: 7   LALGPAGVGKSTFCNSIITHMQSIGRRAHIVNLDPAAEPSEYEFTIDIRDLISLQDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNG LIYC E L +NL DWL EE+ ++ +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  MDLGPNGALIYCFEFLMNNL-DWLDEEIGDF-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ S NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+NILSK+DL+ N   K
Sbjct: 125 LQTSLNFNLCATYLLEAPFVIDRSKFFSGALSAMSAMILLELPHINILSKIDLIKNEVSK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 235
           KE++ +LNP+   L +  +    P+FAKLNK++  LVD++ MV F+PLD  K+S
Sbjct: 185 KELKKFLNPDPLLLNASSDNESNPKFAKLNKAIANLVDDFGMVQFLPLDCNKDS 238

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/229 (55%), Positives = 179/229 (78%), Gaps = 6/229 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG+GKST+C+S+  H +T+ R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct: 7   LVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTIDIRDLISLDDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           L LGPNG LIYC E+L  NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL N V H
Sbjct: 67  LDLGPNGALIYCFEYLMKNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPNIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+D++ +   K
Sbjct: 125 LQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKDEYGK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
           K+++ +LNP++  L +E +Q++ P+F  LN+ +  LVD++ MV F+PL+
Sbjct: 185 KKLKRFLNPDAMLLANEADQNLNPKFHHLNQCIANLVDDFGMVQFLPLE 233

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q4V7Z0|GPN3_XENLA GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 180/237 (75%), Gaps = 7/237 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCET+ R++ +VNLDPAAE+FDYPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCETLNRSVQVVNLDPAAEHFDYPVLADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL+YCME+  +N D WL   L  + +DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDRSLRFGPNGGLVYCMEYFANNFD-WLESCL-GHTEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V+ L+   F VC V+L+DSQF+ +  KF+SG +A+LSAMV LE+P  NI++KMDL++ 
Sbjct: 122 YLVEQLQQWEFRVCGVFLVDSQFMVESFKFLSGVLAALSAMVSLEIPQCNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSEL-NQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             KKEIE +L+P+   ++ +  ++  + +F KL ++L  LVD+YSMV F+P D   E
Sbjct: 182 KAKKEIEKFLDPDMYSMIEDTPSRFKSTKFKKLTEALCGLVDDYSMVRFLPFDRSDE 238

Xenopus laevis (taxid: 8355)

>sp|Q9D3W4|GPN3_MOUSE GPN-loop GTPase 3 OS=Mus musculus GN=Gpn3 PE=2 SV=1

 Score =  267 bits (682), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 178/237 (75%), Gaps = 7/237 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL++CME+  +N D WL   L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDESLRFGPNGGLVFCMEYFANNFD-WLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAMV LE+P VNI++KMDL++ 
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             KKEIE +L+P+   L+ +    +  Q F KL K++  LVD+YSMV F+P D   E
Sbjct: 182 KAKKEIEKFLDPDMYSLIDDSTGDLRSQKFKKLTKAVCGLVDDYSMVRFLPYDQSDE 238

Mus musculus (taxid: 10090)

>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642 PE=3 SV=2

 Score =  266 bits (680), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 183/237 (77%), Gaps = 7/237 (2%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct: 7   LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNGGL+YC E L +NL DWL EE+ +Y +D+YL+FDCPGQIEL+TH+PVL   V H
Sbjct: 67  MELGPNGGLVYCFEFLLNNL-DWLDEEIGDY-NDEYLIFDCPGQIELYTHIPVLPTIVRH 124

Query: 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
           L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct: 125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query: 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESRRL 238
           K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR +
Sbjct: 185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSRSV 240

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6R518|GPN3_RAT GPN-loop GTPase 3 OS=Rattus norvegicus GN=Gpn3 PE=2 SV=1

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 177/237 (74%), Gaps = 7/237 (2%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
           YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct: 4   YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query: 63  MEE--LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           ME+  L  GPNGGL++CME+  +N D WL   L  +++DDY++FDCPGQIEL+TH+PV++
Sbjct: 64  MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCL-GHVEDDYILFDCPGQIELYTHLPVMK 121

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct: 122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query: 181 --KKEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             KKEIE +L+P+   LL +    +  Q F KL K +  LVD+YSMV F+P D   E
Sbjct: 182 KAKKEIEKFLDPDMYSLLEDSTGDLRSQKFKKLTKPVCGLVDDYSMVRFLPYDQSDE 238

Rattus norvegicus (taxid: 10116)

>sp|Q06543|GPN3_YEAST GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR243W PE=1 SV=1

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/231 (54%), Positives = 177/231 (76%), Gaps = 8/231 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           +V+GPAG+GKST+C+S+  H +TV R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct: 7   MVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTIDIRDLISLDDVMEE 66

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
           + LGPNG LIYC E+L  NL DWL EE+ ++ +D+YL+FDCPGQIEL+TH+PVL N V H
Sbjct: 67  MDLGPNGALIYCFEYLLKNL-DWLDEEIGDF-NDEYLIFDCPGQIELYTHIPVLPNIVRH 124

Query: 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
           L  + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    NK
Sbjct: 125 LTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIKGDINK 184

Query: 182 KEIEDYLNPESQFLLSE--LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
           K+++ +LNP++  L+    +NQ   P+F +LN+ +  LVD++ MV F+PL+
Sbjct: 185 KKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLE 235

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
225468099	268	PREDICTED: GPN-loop GTPase 3 homolog [Vi	0.975	0.902	0.885	1e-125
255567152	267	XPA-binding protein, putative [Ricinus c	0.975	0.906	0.868	1e-122
388500596	267	unknown [Lotus japonicus]	0.975	0.906	0.840	1e-120
388493224	267	unknown [Lotus japonicus]	0.975	0.906	0.836	1e-119
118489704	268	unknown [Populus trichocarpa x Populus d	0.975	0.902	0.852	1e-119
224131986	268	predicted protein [Populus trichocarpa]	0.975	0.902	0.852	1e-119
356526825	267	PREDICTED: GPN-loop GTPase 3-like [Glyci	0.975	0.906	0.836	1e-118
255638486	267	unknown [Glycine max]	0.975	0.906	0.831	1e-118
357462187	267	GPN-loop GTPase-like protein [Medicago t	0.975	0.906	0.827	1e-118
115452899	265	Os03g0337700 [Oryza sativa Japonica Grou	0.975	0.913	0.823	1e-117

>gi|225468099|ref|XP_002266090.1| PREDICTED: GPN-loop GTPase 3 homolog [Vitis vinifera] gi|296088830|emb|CBI38288.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/244 (88%), Positives = 236/244 (96%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MG+AQLVIGPAGSGKSTYCSSLY+HCET+RRT+HIVNLDPAAE+FDYPVAMDIREL+SL+
Sbjct: 1   MGFAQLVIGPAGSGKSTYCSSLYQHCETMRRTIHIVNLDPAAESFDYPVAMDIRELVSLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLE+NLDDWL +ELDNYLDDDYLVFDCPGQIELF+HVP+LR
Sbjct: 61  DVMEELGLGPNGGLMYCMEHLEENLDDWLTDELDNYLDDDYLVFDCPGQIELFSHVPMLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFVDHLK +NFNVCAVYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVDHLKRKNFNVCAVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           K++IEDYLNPE +FLLSELNQ MAPQF KLNK+LIELVDEYSMVSF+PLDLRKES  R +
Sbjct: 181 KRDIEDYLNPEPRFLLSELNQRMAPQFGKLNKALIELVDEYSMVSFLPLDLRKESSIRYI 240

Query: 239 LSQI 242
           LSQI
Sbjct: 241 LSQI 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567152|ref|XP_002524557.1| XPA-binding protein, putative [Ricinus communis] gi|223536110|gb|EEF37765.1| XPA-binding protein, putative [Ricinus communis]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/244 (86%), Positives = 233/244 (95%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETV R++HIVNLDPAAENFDYPV+MDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRSIHIVNLDPAAENFDYPVSMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCM+ LEDNLDDWL+EELDNY+DDDYLVFDCPGQIELF+HV VLR
Sbjct: 61  DVMEELGLGPNGALMYCMDELEDNLDDWLSEELDNYMDDDYLVFDCPGQIELFSHVSVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NFNVCAVYLLDSQFITDVTKFISGCMASLSAM+QLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKRKNFNVCAVYLLDSQFITDVTKFISGCMASLSAMIQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK+IEDYLNPES+ LLSELN+ MAPQF KLNK+LIELVDEYSMVSF+PLDLRKES  + +
Sbjct: 181 KKDIEDYLNPESRVLLSELNKRMAPQFVKLNKALIELVDEYSMVSFVPLDLRKESSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500596|gb|AFK38364.1| unknown [Lotus japonicus]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/244 (84%), Positives = 231/244 (94%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HL+ +NFNVC VYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK++ D+L+PE  FLLSELNQ MAPQ+AKLNK+LIELV+ YSMVSF+PLDLRKE   + +
Sbjct: 181 KKDLGDFLDPEPTFLLSELNQRMAPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493224|gb|AFK34678.1| unknown [Lotus japonicus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 231/244 (94%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSL++HCET RRT+H+VNLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCMEHLE+NLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGSLVYCMEHLEENLDDWLDEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HL+ +NFNVC VYLLDSQF+TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLQQKNFNVCVVYLLDSQFMTDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK+++D+L+PE  FLLSELNQ MAPQ+AKLNK+LIELV+ YSMVSF+PLDLRKE   + +
Sbjct: 181 KKDLDDFLDPEPTFLLSELNQRMAPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489704|gb|ABK96653.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 226/244 (92%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLYRHCET  R++ IVNLDPAAE FDYPVAMDIRELI L+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETTGRSIQIVNLDPAAEQFDYPVAMDIRELICLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCME LEDNLDDWL +ELDNY+DDDYLVFDCPGQIELF+HVPVLR
Sbjct: 61  DVMEELGLGPNGALMYCMEELEDNLDDWLTDELDNYMDDDYLVFDCPGQIELFSHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLKS+NFNVC VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKSKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           K++I  YLNP+ Q LLSELNQ MAPQF KLNK+LI+LVD+YSMVSF+PLDLRKES  + +
Sbjct: 181 KRDIGKYLNPQGQVLLSELNQRMAPQFFKLNKALIDLVDQYSMVSFVPLDLRKESSIQYI 240

Query: 239 LSQI 242
           LSQI
Sbjct: 241 LSQI 244

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131986|ref|XP_002321227.1| predicted protein [Populus trichocarpa] gi|222862000|gb|EEE99542.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 227/244 (93%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLYRHCET  R+++IVNLDPAAE FDYPVAMDIRELI L+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETAGRSINIVNLDPAAEQFDYPVAMDIRELICLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNG L+YCME LEDNLDDWL +ELDNY+DDDYLVFDCPGQIELF+HVPVLR
Sbjct: 61  DVMEELGLGPNGALMYCMEELEDNLDDWLTDELDNYMDDDYLVFDCPGQIELFSHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLKS+NFNVC VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKSKNFNVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           K++I  YLNP+ Q LLSELNQ MAPQF KLNK+LI+LVD+YSMVSF+PLDLRKES  + +
Sbjct: 181 KRDIGKYLNPQGQVLLSELNQRMAPQFFKLNKALIDLVDQYSMVSFVPLDLRKESSIQYI 240

Query: 239 LSQI 242
           LSQI
Sbjct: 241 LSQI 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526825|ref|XP_003532017.1| PREDICTED: GPN-loop GTPase 3-like [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 227/244 (93%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY HC   RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++HVPVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHVPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NF+VCAVYLLDSQF+TDVTKFISGCMA LSAMVQLELPHVNILSKMDLVT 
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTK 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK++ED+L+PE  FLLSELNQ M PQ+AKLNK+LIELV+ YSMVSF+PLDLRKE   + +
Sbjct: 181 KKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638486|gb|ACU19552.1| unknown [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 226/244 (92%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY HC   RR++H+VNLDPAAENFDYPVAMDIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCVAARRSIHVVNLDPAAENFDYPVAMDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLEDNLDDWL EELDNYLDDDYLVFDCPGQIEL++H PVL+
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDNLDDWLTEELDNYLDDDYLVFDCPGQIELYSHAPVLK 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NF+VCAVYLLDSQF+TDVTKFISGCMA LSAMVQLELPHVNILSKMDLVT 
Sbjct: 121 NFVEHLKRKNFSVCAVYLLDSQFMTDVTKFISGCMACLSAMVQLELPHVNILSKMDLVTK 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK++ED+L+PE  FLLSELNQ M PQ+AKLNK+LIELV+ YSMVSF+PLDLRKE   + +
Sbjct: 181 KKDLEDFLDPEPTFLLSELNQRMGPQYAKLNKALIELVNNYSMVSFIPLDLRKEKSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462187|ref|XP_003601375.1| GPN-loop GTPase-like protein [Medicago truncatula] gi|355490423|gb|AES71626.1| GPN-loop GTPase-like protein [Medicago truncatula]

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 229/244 (93%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETVRR++H++NLDPAAENFDYPVAMD+RELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVRRSIHVMNLDPAAENFDYPVAMDVRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELGLGPNGGL+YCMEHLED+L+ WL EELDNYLDD+YLVFDCPGQIEL++HVPV R
Sbjct: 61  DVMEELGLGPNGGLVYCMEHLEDSLNGWLDEELDNYLDDEYLVFDCPGQIELYSHVPVFR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK RNFNVC VYLLDSQF+ DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN
Sbjct: 121 NFVEHLKRRNFNVCVVYLLDSQFMVDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK++E++L+PE  FLLSELN+ MAPQ+AKLNKSLIELV  YSMVSF+PLDLRK+   + +
Sbjct: 181 KKDLEEFLDPEPTFLLSELNKRMAPQYAKLNKSLIELVSSYSMVSFIPLDLRKDKSIQYV 240

Query: 239 LSQI 242
           L+QI
Sbjct: 241 LAQI 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452899|ref|NP_001050050.1| Os03g0337700 [Oryza sativa Japonica Group] gi|108708035|gb|ABF95830.1| expressed protein [Oryza sativa Japonica Group] gi|113548521|dbj|BAF11964.1| Os03g0337700 [Oryza sativa Japonica Group]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 228/244 (93%), Gaps = 2/244 (0%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCETV RT+H+VNLDPAAE+F YPV+ DIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60

Query: 61  DVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVMEELG+GPNGGLIYCMEHLEDNLDDWL E+LD YLDDDYLVFDCPGQIELFTHVPVLR
Sbjct: 61  DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120

Query: 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
           NFV+HLK +NFNVCAVY LDSQF++DVTK+ISGCMASLSAM+QLELPH+NILSKMDLV N
Sbjct: 121 NFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN 180

Query: 181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
           KK++E+YLNPE+Q LLS+LN+ MAP+F KLNKSL ELVD+YSMV+F+PLDLRKES  + +
Sbjct: 181 KKDVEEYLNPEAQVLLSQLNRQMAPKFGKLNKSLAELVDDYSMVNFIPLDLRKESSIQYV 240

Query: 239 LSQI 242
           LS I
Sbjct: 241 LSHI 244

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2135793	271	AT4G12790 [Arabidopsis thalian	0.975	0.892	0.737	4.7e-96
ZFIN|ZDB-GENE-040724-141	285	gpn3 "GPN-loop GTPase 3" [Dani	0.927	0.807	0.518	5.4e-63
DICTYBASE|DDB_G0285197	285	gpn3 "GPN-loop GTPase 3" [Dict	0.963	0.838	0.491	8.8e-63
MGI|MGI:1289326	284	Gpn3 "GPN-loop GTPase 3" [Mus	0.955	0.834	0.518	1.1e-62
RGD|1303034	284	Gpn3 "GPN-loop GTPase 3" [Ratt	0.955	0.834	0.518	1.4e-62
CGD|CAL0002280	273	orf19.3130 [Candida albicans (	0.919	0.835	0.519	7.9e-62
UNIPROTKB|Q5A0W6	273	CaO19.10642 "GPN-loop GTPase 3	0.919	0.835	0.519	7.9e-62
SGD|S000004233	272	GPN3 "Putative GTPase with a r	0.899	0.819	0.519	1e-61
UNIPROTKB|Q9UHW5	284	GPN3 "GPN-loop GTPase 3" [Homo	0.955	0.834	0.502	1.3e-61
UNIPROTKB|F1P8E5	284	GPN3 "Uncharacterized protein"	0.955	0.834	0.502	2.1e-61

TAIR|locus:2135793 AT4G12790 [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 180/244 (73%), Positives = 209/244 (85%)

Query:     1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE 60
             MGYAQLVIGPAGSGKSTYCSSLY HCET+ RTMH+VNLDPAAE F+YPVAMDIRELISLE
Sbjct:     1 MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLE 60

Query:    61 DVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             DVME+L LGPNG L+YCME+LED+L DW              +FDCPGQIELFTHVPVL+
Sbjct:    61 DVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFDCPGQIELFTHVPVLK 120

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
             NFV+HLK +NFNVC VYLLDSQFITDVTKFISGCM+SL+AM+QLELPHVNILSKMDL+ +
Sbjct:   121 NFVEHLKQKNFNVCVVYLLDSQFITDVTKFISGCMSSLAAMIQLELPHVNILSKMDLLQD 180

Query:   181 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRL 238
             K  I+DYLNPE + LL+ELN+ M PQ+AKLNK+LIE+V EY MV+F+P++LRKE   + +
Sbjct:   181 KSNIDDYLNPEPRTLLAELNKRMGPQYAKLNKALIEMVGEYGMVNFIPINLRKEKSIQYV 240

Query:   239 LSQI 242
             LSQI
Sbjct:   241 LSQI 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040724-141 gpn3 "GPN-loop GTPase 3" [Danio rerio (taxid:7955)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 123/237 (51%), Positives = 172/237 (72%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYC+++  HC+ + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCATMLEHCQALNRSVQVVNLDPAAEHFEYPVIADIRELIQVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGLI+CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLIFCMEYFSNNFD-WLEESLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V+ L+   F VC V+L+DSQF+ +  KFISG MA+LSAMV LE+P VNI++KMDL++ 
Sbjct:   122 QLVEQLQQWEFRVCGVFLVDSQFMVETFKFISGVMAALSAMVMLEIPQVNIMTKMDLLSP 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234
             K  KEIE YL+P+   ++ + +  + + +F+KL K++  L+D+YSMV F+P D   E
Sbjct:   182 KAKKEIEKYLDPDMYSMMEDNSVALRSKKFSKLTKAICGLIDDYSMVRFLPFDRTDE 238

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

DICTYBASE|DDB_G0285197 gpn3 "GPN-loop GTPase 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 121/246 (49%), Positives = 183/246 (74%)

Query:     1 MG-YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISL 59
             MG + QLV+GPAGSGKSTYC ++ ++CE ++R++HIVNLDPAAE F+YPV++DI+ L+++
Sbjct:     1 MGKHVQLVMGPAGSGKSTYCDTMRKYCEEIKRSVHIVNLDPAAEVFEYPVSVDIKNLVTV 60

Query:    60 EDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVL 119
             ++VM+EL  GPNGGL+Y ME+L +N+D W              + DCPGQIEL++H+PV+
Sbjct:    61 DEVMDELHYGPNGGLVYAMEYLIENMD-WLTDELGDYEDDYL-IIDCPGQIELYSHIPVM 118

Query:   120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179
             R  VDHL+   ++VC+V+L+DSQFI D  KFISG +  LSAMV+LE+PH+N+L+K+D++ 
Sbjct:   119 RILVDHLQQIGYSVCSVFLVDSQFILDNCKFISGALMCLSAMVRLEVPHINVLTKIDVLK 178

Query:   180 NK---KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KES 235
                  KEIE +L+ E Q L+ ELN     ++ ++NK++  L++++S+V F+PLD+  +ES
Sbjct:   179 TSDQYKEIEKFLDLEVQNLVEELNLETHDRYHRMNKAIGSLLEDFSLVGFVPLDITDQES 238

Query:   236 RRLLSQ 241
               +L Q
Sbjct:   239 LNVLLQ 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1289326 Gpn3 "GPN-loop GTPase 3" [Mus musculus (taxid:10090)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 127/245 (51%), Positives = 174/245 (71%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDESLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAMV LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLR-KESR 236
             K  KEIE +L+P+   L+ +    +  Q F KL K++  LVD+YSMV F+P D   +ES 
Sbjct:   182 KAKKEIEKFLDPDMYSLIDDSTGDLRSQKFKKLTKAVCGLVDDYSMVRFLPYDQSDEESM 241

Query:   237 RLLSQ 241
              ++ Q
Sbjct:   242 NIVLQ 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1303034 Gpn3 "GPN-loop GTPase 3" [Rattus norvegicus (taxid:10116)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 127/245 (51%), Positives = 173/245 (70%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYCS++ +HCE + R++ +VNLDPAAE+F+YPV  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSLIELVDEYSMVSFMPLDLR-KESR 236
             K  KEIE +L+P+   LL +    +  Q F KL K +  LVD+YSMV F+P D   +ES 
Sbjct:   182 KAKKEIEKFLDPDMYSLLEDSTGDLRSQKFKKLTKPVCGLVDDYSMVRFLPYDQSDEESM 241

Query:   237 RLLSQ 241
              ++ Q
Sbjct:   242 NIVLQ 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

CGD|CAL0002280 orf19.3130 [Candida albicans (taxid:5476)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 122/235 (51%), Positives = 171/235 (72%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct:     7 LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNGGL+YC E L +NLD W              +FDCPGQIEL+TH+PVL   V H
Sbjct:    67 MELGPNGGLVYCFEFLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRH 124

Query:   126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
             L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct:   125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query:   182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236
             K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR
Sbjct:   185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSR 238

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A0W6 CaO19.10642 "GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642" [Candida albicans SC5314 (taxid:237561)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 122/235 (51%), Positives = 171/235 (72%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             LV+GPAG GKST+C+S+  + +++ R  HIVNLDPAA   +Y   +D+++LISL+DVMEE
Sbjct:     7 LVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNGGL+YC E L +NLD W              +FDCPGQIEL+TH+PVL   V H
Sbjct:    67 MELGPNGGLVYCFEFLLNNLD-WLDEEIGDYNDEYL-IFDCPGQIELYTHIPVLPTIVRH 124

Query:   126 LK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN---K 181
             L+ S NFN+CA YLL++ FI D +KF SG ++++SAM+ LELPH+NILSK+DLV +   K
Sbjct:   125 LQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEYSK 184

Query:   182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236
             K+++ +LNP+   LL++   ++ P+FAKL +S+  LVD++ MV F+PLD  K+SR
Sbjct:   185 KQLKKFLNPDP-LLLAKQEDYINPKFAKLTQSIANLVDDFGMVQFLPLDCSKDSR 238

GO:0008150 "biological_process" evidence=ND

SGD|S000004233 GPN3 "Putative GTPase with a role in biogenesis of RNA pol II and polIII" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 120/231 (51%), Positives = 166/231 (71%)

Query:     6 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
             +V+GPAG+GKST+C+S+  H +TV R  HIVNLDPAAE   Y   +DIR+LISL+DVMEE
Sbjct:     7 MVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTIDIRDLISLDDVMEE 66

Query:    66 LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
             + LGPNG LIYC E+L  NLD W              +FDCPGQIEL+TH+PVL N V H
Sbjct:    67 MDLGPNGALIYCFEYLLKNLD-WLDEEIGDFNDEYL-IFDCPGQIELYTHIPVLPNIVRH 124

Query:   126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT---NK 181
             L  + NFN+CA YLL++ F+ D +KF SG ++++SAM+ LELPH+N+LSK+DL+    NK
Sbjct:   125 LTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIKGDINK 184

Query:   182 KEIEDYLNPESQFLLSE--LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLD 230
             K+++ +LNP++  L+    +NQ   P+F +LN+ +  LVD++ MV F+PL+
Sbjct:   185 KKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLE 235

GO:0005525 "GTP binding" evidence=IEA;ISA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044376 "RNA polymerase II complex localization to nucleus" evidence=IMP

GO:1990022 "RNA polymerase III complex localization to nucleus" evidence=IMP

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9UHW5 GPN3 "GPN-loop GTPase 3" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 123/245 (50%), Positives = 174/245 (71%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLR-KESR 236
             K  KEIE +L+P+   LL +    + + +F KL K++  L+D+YSMV F+P D   +ES 
Sbjct:   182 KAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESM 241

Query:   237 RLLSQ 241
              ++ Q
Sbjct:   242 NIVLQ 246

GO:0005525 "GTP binding" evidence=IEA

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|F1P8E5 GPN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 123/245 (50%), Positives = 174/245 (71%)

Query:     3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
             YAQLV+GPAGSGKSTYC+++ +HCE + R++ +VNLDPAAE+F+Y V  DIRELI ++DV
Sbjct:     4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDV 63

Query:    63 MEE--LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLR 120
             ME+  L  GPNGGL++CME+  +N D W              +FDCPGQIEL+TH+PV++
Sbjct:    64 MEDDSLRFGPNGGLVFCMEYFANNFD-WLENCLGHVEDDYI-LFDCPGQIELYTHLPVMK 121

Query:   121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180
               V  L+   F VC V+L+DSQF+ +  KFISG +A+LSAM+ LE+P VNI++KMDL++ 
Sbjct:   122 QLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSK 181

Query:   181 K--KEIEDYLNPESQFLLSELNQHM-APQFAKLNKSLIELVDEYSMVSFMPLDLR-KESR 236
             K  KEIE +L+P+   LL +    + + +F KL K++  L+D+YSMV F+P D   +ES 
Sbjct:   182 KAKKEIEKFLDPDMYSLLDDSASDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESM 241

Query:   237 RLLSQ 241
              ++ Q
Sbjct:   242 NIVLQ 246

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NK8	GPN3_DICDI	No assigned EC number	0.5226	0.9556	0.8315	yes	no
Q0P5E2	GPN3_BOVIN	No assigned EC number	0.5232	0.9274	0.8098	yes	no
Q5A0W6	GPN3_CANAL	No assigned EC number	0.5443	0.9274	0.8424	N/A	no
Q6FSS0	GPN3_CANGA	No assigned EC number	0.5502	0.8991	0.8228	yes	no
Q28I42	GPN3_XENTR	No assigned EC number	0.5358	0.9274	0.8070	yes	no
Q6CQA6	GPN3_KLULA	No assigned EC number	0.5541	0.9072	0.8302	yes	no
O14443	GPN3_SCHPO	No assigned EC number	0.5141	0.9556	0.8586	yes	no
Q06543	GPN3_YEAST	No assigned EC number	0.5454	0.8991	0.8198	yes	no
Q9UHW5	GPN3_HUMAN	No assigned EC number	0.5316	0.9274	0.8098	yes	no
Q750Q9	GPN3_ASHGO	No assigned EC number	0.5258	0.9112	0.8339	yes	no
Q6BI59	GPN3_DEBHA	No assigned EC number	0.5555	0.9193	0.8321	yes	no
Q9D3W4	GPN3_MOUSE	No assigned EC number	0.5485	0.9274	0.8098	yes	no
Q6ZM63	GPN3_DANRE	No assigned EC number	0.5443	0.9274	0.8070	yes	no
Q4V7Z0	GPN3_XENLA	No assigned EC number	0.5443	0.9274	0.8070	N/A	no
Q6CBB5	GPN3_YARLI	No assigned EC number	0.5108	0.9072	0.8302	yes	no
Q4PF70	GPN3_USTMA	No assigned EC number	0.5245	0.9274	0.8185	N/A	no
P0CN94	GPN3_CRYNJ	No assigned EC number	0.5098	0.9798	0.8466	yes	no
P0CN95	GPN3_CRYNB	No assigned EC number	0.5098	0.9798	0.8466	N/A	no
Q6R518	GPN3_RAT	No assigned EC number	0.5485	0.9274	0.8098	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV1116	hypothetical protein (269 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0004003701	hypothetical protein (230 aa)			•	•					0.534
	estExt_fgenesh4_pm.C_LG_VI0124	hypothetical protein (284 aa)			•	•					0.511
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.444
	grail3.3692000102	hypothetical protein (121 aa)			•						0.439
	estExt_fgenesh4_pm.C_LG_VIII0372	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.425
	estExt_Genewise1_v1.C_LG_X0940	SubName- Full=Putative uncharacterized protein; (159 aa)			•						0.413
	estExt_fgenesh4_pm.C_LG_XVIII0351	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	estExt_Genewise1_v1.C_LG_VI0968	SubName- Full=Putative uncharacterized protein; (160 aa)			•						0.402
	gw1.III.419.1	hypothetical protein (133 aa)			•						0.401
	gw1.13170.2.1	hypothetical protein (131 aa)			•						0.401

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	3e-91
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	4e-48
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-25
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score =  268 bits (687), Expect = 3e-91
 Identities = 103/239 (43%), Positives = 152/239 (63%), Gaps = 13/239 (5%)

Query: 7   VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
           V+GPAGSGK+T+  +L      + R++++VNLDPAAEN  Y   +DIRELI++ DVME+ 
Sbjct: 1   VVGPAGSGKTTFVGALSEILPLLGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDD 60

Query: 67  GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
           GLGPNG L   M+ L   L DWL EEL+   +DDY +FD PGQIELFTH   L   V+ L
Sbjct: 61  GLGPNGALTVAMDFLRITL-DWLLEELEY--EDDYYLFDTPGQIELFTHWESLARGVEAL 117

Query: 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIED 186
           ++ +  + AVYL+D++ +TD + F SG + +LS M++L LP V  L+K DL++ +  ++ 
Sbjct: 118 EA-SLRLGAVYLVDTRRLTDPSDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLEFALKW 176

Query: 187 YLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLD-LRKESR-RLLSQI 242
           + +P+   LL EL        +KLN+++ E +D + +V  F+P      ES   LL+ I
Sbjct: 177 FTDPDDLQLLLEL------DPSKLNEAIREALDLFYLVPRFLPDARETGESMEDLLTLI 229

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score =  159 bits (404), Expect = 4e-48
 Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 7   VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEEL 66
            +G AGSGK+T   +L    E     + IVNLDPA E   Y    D+R+ ++  ++M++ 
Sbjct: 7   FLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKY 66

Query: 67  GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 126
           GLGPNG LI  ++ L    D+ + EE++  LD DY++ D PGQ+ELF      R  V+ L
Sbjct: 67  GLGPNGALIASVDLLLTKADE-IKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLVERL 124

Query: 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK--KEI 184
            S +     V+L+D+      + F+S  + +LS  ++L LP + +L+K DL++ +  + I
Sbjct: 125 -SGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERI 183

Query: 185 EDYL-NPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221
             +L +PE   LL EL          L+  L+  ++E 
Sbjct: 184 LKWLEDPEY--LLEELKLE-KGLQGLLSLELLRALEET 218

Length = 253

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 97.7 bits (243), Expect = 8e-25
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 18/219 (8%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-----VAMDIRELI 57
           +  +V+G  G GK+T  + L            I NLDPA     Y         D     
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 58  SLEDVMEELGLGPNGGLIYC----MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF 113
               +  E   G NG LI       E  ++  ++WL EEL     DD  +     +I+LF
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWL-EELRELAPDDVPILLVGNKIDLF 124

Query: 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173
                    ++ L         V L+ +             +   SA   L  P+VN L 
Sbjct: 125 DEQSSSEEILNQLNR-----EVVLLVLAPKAVLPEVANPALLE-TSAK-SLTGPNVNELF 177

Query: 174 KMDLVTNKKEIEDY-LNPESQFLLSELNQHMAPQFAKLN 211
           K  L    +EIE   L  E + L    N       A  N
Sbjct: 178 KELLRKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFN 216

Length = 219

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 32/120 (26%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           L+ GP GSGKST    L                   AE    PV       ISL+D++ E
Sbjct: 3   LITGPPGSGKSTLAKKL-------------------AEKLGIPV-------ISLDDLLRE 36

Query: 66  LGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124
            GL     G +  ++   + L++ L E     L     V D   +  L   +      V 
Sbjct: 37  EGLAELDDGELDDIDIDLELLEEILDE-----LAKQEWVIDGVRESTLELRLEEADLVVF 91

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG1533	290	consensus Predicted GTPase [General function predi	100.0
KOG1534	273	consensus Putative transcription factor FET5 [Tran	100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	100.0
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	100.0
PRK13768	253	GTPase; Provisional	99.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.96
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.94
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.93
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.93
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.93
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.93
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.92
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.92
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.92
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.91
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.91
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.91
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.91
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.91
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.91
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.91
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.91
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.91
COG4559	259	ABC-type hemin transport system, ATPase component	99.91
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.91
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.91
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.91
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.91
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.91
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.91
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.91
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.9
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.9
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.9
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.9
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.9
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.9
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.9
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.9
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.9
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.9
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.9
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.9
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.9
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.9
PRK10908	222	cell division protein FtsE; Provisional	99.9
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.9
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.9
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.9
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.9
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.9
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.9
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.89
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.89
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.89
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.89
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.89
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.89
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.89
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.89
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.89
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.89
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.89
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.89
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.89
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.89
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.89
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.89
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.89
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.89
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.89
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.89
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.89
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.89
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.89
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.89
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.89
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.89
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.89
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.89
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.88
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.88
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.88
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.88
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.88
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.88
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.88
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.88
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.88
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.88
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.88
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.88
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.88
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.88
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.88
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.88
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.88
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.88
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.88
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.88
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.88
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.88
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.88
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.88
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.88
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.88
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.88
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.87
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.87
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.87
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.87
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.87
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.87
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.87
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.87
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.87
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.87
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.87
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.87
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.87
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.87
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.87
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.87
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.87
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.87
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.87
PRK10938	490	putative molybdenum transport ATP-binding protein	99.87
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.86
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.86
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.86
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.86
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
cd03246	173	ABCC_Protease_Secretion This family represents the	99.86
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.86
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.86
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.86
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.86
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.86
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.86
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.86
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.86
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.86
COG1123	539	ATPase components of various ABC-type transport sy	99.86
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.86
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.85
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.85
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.85
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.85
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.85
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.85
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.85
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.85
COG4181	228	Predicted ABC-type transport system involved in ly	99.85
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.85
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.85
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.85
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.85
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.85
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.85
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.85
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.85
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.85
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.84
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.84
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.84
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.84
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.84
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.84
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.84
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.84
PRK13409	590	putative ATPase RIL; Provisional	99.84
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.83
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.83
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.83
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.83
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.83
PRK13409	590	putative ATPase RIL; Provisional	99.83
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.83
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.83
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.83
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.83
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.83
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.83
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.83
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.83
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.82
PLN03211	659	ABC transporter G-25; Provisional	99.82
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.82
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.82
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.82
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.82
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.82
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.82
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.82
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.81
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.81
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.81
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.81
COG4988	559	CydD ABC-type transport system involved in cytochr	99.8
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.8
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.8
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK10938	490	putative molybdenum transport ATP-binding protein	99.8
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.8
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.8
COG0488	530	Uup ATPase components of ABC transporters with dup	99.8
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.8
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.8
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.8
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.8
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.8
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.79
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.79
COG1123	539	ATPase components of various ABC-type transport sy	99.79
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.79
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.79
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.79
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.79
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.79
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.79
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.79
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.79
PRK11147	635	ABC transporter ATPase component; Reviewed	99.79
COG4172	534	ABC-type uncharacterized transport system, duplica	99.79
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.78
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.78
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.78
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.78
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.78
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.78
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.78
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.78
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.78
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.78
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.77
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.77
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.77
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.77
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.77
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.77
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.77
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.77
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.77
PRK11147	635	ABC transporter ATPase component; Reviewed	99.77
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.76
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.76
PLN03140	1470	ABC transporter G family member; Provisional	99.76
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.76
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.75
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.75
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.75
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.75
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.74
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.74
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.74
PLN03073	718	ABC transporter F family; Provisional	99.73
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.73
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.72
COG4987	573	CydC ABC-type transport system involved in cytochr	99.71
PLN03232	1495	ABC transporter C family member; Provisional	99.71
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.71
PLN03140	1470	ABC transporter G family member; Provisional	99.7
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.7
COG0488	530	Uup ATPase components of ABC transporters with dup	99.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.69
PLN03130	1622	ABC transporter C family member; Provisional	99.69
PTZ00243	1560	ABC transporter; Provisional	99.69
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.69
PLN03073	718	ABC transporter F family; Provisional	99.67
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.67
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.67
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.66
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.65
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.65
PLN03130	1622	ABC transporter C family member; Provisional	99.65
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.65
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.64
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.64
PLN03232	1495	ABC transporter C family member; Provisional	99.64
KOG0062	582	consensus ATPase component of ABC transporters wit	99.62
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.62
PTZ00243	1560	ABC transporter; Provisional	99.62
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.61
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.61
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.61
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.59
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.59
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.58
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.58
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.57
COG4172	534	ABC-type uncharacterized transport system, duplica	99.56
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.55
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.54
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.54
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.53
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.51
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.48
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.47
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.46
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.45
COG4178	604	ABC-type uncharacterized transport system, permeas	99.45
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.44
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.42
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.41
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.38
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.38
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.37
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.3
KOG0062	582	consensus ATPase component of ABC transporters wit	99.29
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.29
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.26
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.25
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.25
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.24
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.23
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.21
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.21
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.2
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.19
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.16
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.16
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.14
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.13
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.11
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.08
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.06
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.06
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.0
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.98
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.91
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.91
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.86
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.86
COG3910	233	Predicted ATPase [General function prediction only	98.82
PRK10416	318	signal recognition particle-docking protein FtsY;	98.82
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.81
COG1100	219	GTPase SAR1 and related small G proteins [General	98.79
PRK13695	174	putative NTPase; Provisional	98.77
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.73
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.72
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.72
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.72
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.7
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.69
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.69
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.65
PRK00089	292	era GTPase Era; Reviewed	98.65
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.64
smart00382	148	AAA ATPases associated with a variety of cellular	98.63
PRK14974	336	cell division protein FtsY; Provisional	98.58
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.58
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.58
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.57
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.56
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.56
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.55
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.55
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.53
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.52
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.52
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.48
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.47
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.47
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.47
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.47
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.45
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.44
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.43
cd03112	158	CobW_like The function of this protein family is u	98.43
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.43
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.42
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.42
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.41
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.4
PRK06067	234	flagellar accessory protein FlaH; Validated	98.39
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.38
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.36
PRK09866	741	hypothetical protein; Provisional	98.36
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.36
cd01128	249	rho_factor Transcription termination factor rho is	98.36
cd00881	189	GTP_translation_factor GTP translation factor fami	98.36
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.35
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.34
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.34
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.33
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.33
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.33
cd03114	148	ArgK-like The function of this protein family is u	98.31
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.31
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.3
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.29
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.29
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.26
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.26
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.26
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.23
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.23
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.23
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.23
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.22
PRK12298	390	obgE GTPase CgtA; Reviewed	98.21
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.2
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.19

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=100.00  E-value=1e-61  Score=408.38  Aligned_cols=245  Identities=46%  Similarity=0.811  Sum_probs=228.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      |+|+++||||+||||||+|..++.++...++++.++|+||+++.++|+++++|++.++++++|+++++||||+.++|+++
T Consensus         1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~   80 (290)
T KOG1533|consen    1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY   80 (290)
T ss_pred             CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      +..+. .|+...+... ...|+|||+|||+|+++++...+++++.|.+.+.++++||++|+|+|++|++|+|..++++.+
T Consensus        81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t  158 (290)
T KOG1533|consen   81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT  158 (290)
T ss_pred             HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence            99999 9999888774 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeeeeecccccccchhhh----hhhcc-cCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCCeeeEEeecccc
Q 025795          161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE  234 (248)
Q Consensus       161 ~~~~~~p~~~vlsk~dll~~~~~l----~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~  234 (248)
                      |+.+++|||||+||+|++++++.+    +.|.+ .|..+|.+.++. +..+||+|||++||++|+||+||+|.||+++|+
T Consensus       159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk  238 (290)
T KOG1533|consen  159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK  238 (290)
T ss_pred             HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence            999999999999999999987543    33333 467777776654 445799999999999999999999999999999


Q ss_pred             H--HHHHHHHhhcCC
Q 025795          235 S--RRLLSQIMKMSY  247 (248)
Q Consensus       235 ~--~~~~~~id~~~~  247 (248)
                      |  .+++++||+||-
T Consensus       239 eSml~l~~~IDkAnG  253 (290)
T KOG1533|consen  239 ESMLRLQQTIDKANG  253 (290)
T ss_pred             HHHHHHHHHHHhccC
Confidence            9  999999999983

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=100.00  E-value=2.9e-59  Score=388.14  Aligned_cols=242  Identities=65%  Similarity=1.162  Sum_probs=227.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      |+|.+.|+||+||||||+|+.+..+.+..++++.++|+|||++.+.|+..++|||.|+++++|+.+.+||||++++|+++
T Consensus         2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy   81 (273)
T KOG1534|consen    2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY   81 (273)
T ss_pred             CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      +.+++ .|+...+..+ +.+|+|||+|||+++++|..+++++++.++++++++++||++|++++.|..+|+|+++.++++
T Consensus        82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA  159 (273)
T KOG1534|consen   82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA  159 (273)
T ss_pred             HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence            99999 9999988765 889999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HHhhCCCeeeeecccccccc--hhhhhhhcccCHHHHHH--HhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH-
Q 025795          161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-  235 (248)
Q Consensus       161 ~~~~~~p~~~vlsk~dll~~--~~~l~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~-  235 (248)
                      |+++++|||||+||+||++.  ++++++|+++|...+.+  +.+. ..+||++|++.|+++++|||+|+|+|++.+|++ 
T Consensus       160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS  238 (273)
T KOG1534|consen  160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES  238 (273)
T ss_pred             HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence            99999999999999999985  34899999998776654  3332 336999999999999999999999999999999 


Q ss_pred             -HHHHHHHhhc
Q 025795          236 -RRLLSQIMKM  245 (248)
Q Consensus       236 -~~~~~~id~~  245 (248)
                       ..+|++||.|
T Consensus       239 i~~iL~~ID~a  249 (273)
T KOG1534|consen  239 INIILSYIDDA  249 (273)
T ss_pred             HHHHHHHHHHH
Confidence             9999999986

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=100.00  E-value=9.1e-51  Score=351.95  Aligned_cols=231  Identities=51%  Similarity=0.874  Sum_probs=182.3

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhhHH
Q 025795            7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD   86 (248)
Q Consensus         7 iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~   86 (248)
                      |+||+||||||||+.+..+++..++++.++|+||+++.++|.+++||||.++++++|++++|||||+..+|++++..++ 
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~-   79 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI-   79 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCC
Q 025795           87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL  166 (248)
Q Consensus        87 ~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~  166 (248)
                      .|+...+... +++|+|+|+|||++.++++..++.+++.|.+ +.++++||++|++.+.+|.+|++++++++++|+++++
T Consensus        80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l  157 (238)
T PF03029_consen   80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL  157 (238)
T ss_dssp             HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence            9998888665 7799999999999999999999889999976 7889999999999999999999999999999999999


Q ss_pred             Ceeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCe-eeEEeeccccH--HHHHHH
Q 025795          167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKES--RRLLSQ  241 (248)
Q Consensus       167 p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~f~~l~~~~~~--~~~~~~  241 (248)
                      ||++|+||+|+++++  ..++++.  +.+.+...++..    +++++++|++++++|+++ +|+|+|++|++  .+|+++
T Consensus       158 P~vnvlsK~Dl~~~~~~~~l~~~~--d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~  231 (238)
T PF03029_consen  158 PHVNVLSKIDLLSKYLEFILEWFE--DPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA  231 (238)
T ss_dssp             EEEEEE--GGGS-HHHHHHHHHHH--SHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred             CEEEeeeccCcccchhHHHHHHhc--ChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence            999999999999843  2334443  445554444432    899999999999999998 99999999999  999999


Q ss_pred             HhhcC
Q 025795          242 IMKMS  246 (248)
Q Consensus       242 id~~~  246 (248)
                      ||+|+
T Consensus       232 id~a~  236 (238)
T PF03029_consen  232 IDKAN  236 (238)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99985

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=100.00  E-value=1.3e-35  Score=255.54  Aligned_cols=239  Identities=27%  Similarity=0.455  Sum_probs=207.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.++.++|.+|||||||++-|.+|+...+-..+++|+||+..++||+.++||||.+.+.++|++++|||||+...|++.+
T Consensus        19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF   98 (366)
T KOG1532|consen   19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF   98 (366)
T ss_pred             CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence            46889999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             hhhHH--HHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHH
Q 025795           82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (248)
Q Consensus        82 ~~~~~--~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (248)
                      ..++.  ..+.+....  +-+++|+|.|||++.+++.....-+...|+. -..++++|.+|+.....|..|+|+++.+||
T Consensus        99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence            98884  234444444  5679999999999999999998444555654 456778999999999999999999999999


Q ss_pred             HHHhhCCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH--H
Q 025795          160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES--R  236 (248)
Q Consensus       160 ~~~~~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~--~  236 (248)
                      .+.+..+|.+.||||+|+....+.++++ . |.+.+.+++++........|.+++...+++|-- +.+.-++.-.++  .
T Consensus       176 ilyktklp~ivvfNK~Dv~d~~fa~eWm-~-DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  176 ILYKTKLPFIVVFNKTDVSDSEFALEWM-T-DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHhccCCeEEEEecccccccHHHHHHH-H-HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            9999999999999999998887444433 2 677888888865556789999999999999865 888888888877  8


Q ss_pred             HHHHHHhhc
Q 025795          237 RLLSQIMKM  245 (248)
Q Consensus       237 ~~~~~id~~  245 (248)
                      .++..||.+
T Consensus       254 df~~av~~~  262 (366)
T KOG1532|consen  254 DFFTAVDES  262 (366)
T ss_pred             HHHHHHHHH
Confidence            888888864

>PRK13768 GTPase; Provisional

Probab=99.97  E-value=3.8e-29  Score=218.73  Aligned_cols=243  Identities=31%  Similarity=0.560  Sum_probs=208.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      |++++++.||.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++.+++|...+++|++..+++++.
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~   80 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL   80 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence            88999999999999999999999998877778999999999998999999999999999999999999999999999887


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      ...+. .|+...+... +++++++|.|++.+++.++...+.+.+.+.+.+ +-++++++|+....++.++.....+..+.
T Consensus        81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~  157 (253)
T PRK13768         81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV  157 (253)
T ss_pred             HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence            77776 6776666654 679999999999999998888877888776544 66788899999889999999988888899


Q ss_pred             HHhhCCCeeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH--
Q 025795          161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES--  235 (248)
Q Consensus       161 ~~~~~~p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~--  235 (248)
                      +.+.+.|++.|+||+|++++.  ..+.++++ +++.+.++++...+.+ ++|++++++.+++++. .++.|+|+.+++  
T Consensus       158 ~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl  235 (253)
T PRK13768        158 QLRLGLPQIPVLNKADLLSEEELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF  235 (253)
T ss_pred             HHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence            999999999999999999764  12344455 6677777776555445 9999999999999997 599999999988  


Q ss_pred             HHHHHHHhhcCCC
Q 025795          236 RRLLSQIMKMSYS  248 (248)
Q Consensus       236 ~~~~~~id~~~~~  248 (248)
                      ..++..|.+.-++
T Consensus       236 ~~L~~~I~~~l~~  248 (253)
T PRK13768        236 DELYAAIQEVFCG  248 (253)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999887653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.1e-29  Score=210.41  Aligned_cols=143  Identities=20%  Similarity=0.261  Sum_probs=117.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~---------   58 (248)
                      -+++|+||+|||||||+|||+++.+|++|+|.++|.++..               |++..+|.+|+-|++.         
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~  108 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL  108 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence            4789999999999999999999999999999999965531               5666688889999886         


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              +.++++++||.+..... + ..++++  +|++|||+|+.  +|++++|||||+ |||+...++. +.++.|+
T Consensus       109 ~k~eA~~~A~~lL~~VGL~~ka~~y-P-~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA  183 (240)
T COG1126         109 SKAEAREKALELLEKVGLADKADAY-P-AQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA  183 (240)
T ss_pred             CHHHHHHHHHHHHHHcCchhhhhhC-c-cccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence                    56788899998774333 3 345554  45999999999  999999999999 9999999999 9999999


Q ss_pred             hCCCeEEEEEecccccccChHHHHHHH
Q 025795          128 SRNFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      ++|.|.++|    +|.+.-..++.+.+
T Consensus       184 ~eGmTMivV----THEM~FAr~Vadrv  206 (240)
T COG1126         184 EEGMTMIIV----THEMGFAREVADRV  206 (240)
T ss_pred             HcCCeEEEE----echhHHHHHhhheE
Confidence            999998877    35554444444433

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=3.3e-29  Score=217.73  Aligned_cols=162  Identities=21%  Similarity=0.347  Sum_probs=124.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+|+|+|+++|.+|+|.++|.+...       +.+.|       +..++|+|.+.          
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~  108 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF  108 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence            4789999999999999999999999999999999987642       12222       33455666553          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+|+.....+.  .+.++++.  ++|||++|++  +|+++++||||+ ||+.++.+++ +++++
T Consensus       109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~  183 (258)
T COG1120         109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD  183 (258)
T ss_pred             cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence                      77789999998877666  45676664  4999999999  999999999999 9999999999 99999


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHHHHHHHHH-HHHHhhCCCeeeeecc
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSK  174 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~-~~~~~~~~p~~~vlsk  174 (248)
                      +++ +|.++++|    .|...-...|++.+++.. +.++..|.|. .|++.
T Consensus       184 l~~~~~~tvv~v----lHDlN~A~ryad~~i~lk~G~i~a~G~p~-evlT~  229 (258)
T COG1120         184 LNREKGLTVVMV----LHDLNLAARYADHLILLKDGKIVAQGTPE-EVLTE  229 (258)
T ss_pred             HHHhcCCEEEEE----ecCHHHHHHhCCEEEEEECCeEEeecCcc-hhcCH
Confidence            984 58888777    245555567776555544 4555666665 35543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.9e-28  Score=210.19  Aligned_cols=157  Identities=16%  Similarity=0.282  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC---------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY---------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y---------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+|++.|+++|.+|+|.+.|.....    ..++|         ...++|+|.+.           
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~  110 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR  110 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence            4689999999999999999999999999999998875422    22444         23467888775           


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               ++++++++|+.....+.  ...+++++  |+.|||||+.  +|++++||||++ +|+.++..+. ++++++
T Consensus       111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l  185 (254)
T COG1121         111 RLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKEL  185 (254)
T ss_pred             cccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence                     78899999998776555  45677764  5899999999  999999999999 9999999999 999999


Q ss_pred             HhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  168 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~  168 (248)
                      +++|++|++|+    |.+.....+++.+++.....+..+.|.
T Consensus       186 ~~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G~~~  223 (254)
T COG1121         186 RQEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASGPPE  223 (254)
T ss_pred             HHCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEeccChh
Confidence            98899998874    666666777666655555555555444

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=3.1e-26  Score=204.29  Aligned_cols=143  Identities=16%  Similarity=0.284  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~-----------   58 (248)
                      -++|++||||||||||+|+|+|+++|++|+|.+.|.++..             +...+++.+|++|++.           
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~  111 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE  111 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence            4789999999999999999999999999999999988743             2333466789998875           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.++|.+.....  ...++.++  ++.||.+|..  +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus       112 ~~~~~~~~~l~~~~L~~~~~~~--~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g  186 (293)
T COG1131         112 EAEERIEELLELFGLEDKANKK--VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG  186 (293)
T ss_pred             HHHHHHHHHHHHcCCchhhCcc--hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 56789999999843222  34566655  4899999999  999999999999 9999999999 9999998876


Q ss_pred             -CeEEEEEecccccccChHHHHHHH
Q 025795          131 -FNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       131 -~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                       .+|+    +.+|.+.+...+|+.+
T Consensus       187 ~~tvl----issH~l~e~~~~~d~v  207 (293)
T COG1131         187 GVTIL----LSTHILEEAEELCDRV  207 (293)
T ss_pred             CcEEE----EeCCcHHHHHHhCCEE
Confidence             5664    4578888888776644

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3e-26  Score=190.51  Aligned_cols=143  Identities=17%  Similarity=0.215  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~-----------   58 (248)
                      -++||+|||||||||++|+|++++.|++|.|+++|.|...             ...+++..+|++|++.           
T Consensus        29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~  108 (245)
T COG4555          29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK  108 (245)
T ss_pred             eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence            4789999999999999999999999999999999988643             2233455789999885           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++++++.....+.+  -.++.++  ++.||||+++  +|++++||||++ ||..+++.+. ++++++++.|
T Consensus       109 ~~kari~~l~k~l~l~~~~~rRv--~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg  183 (245)
T COG4555         109 EIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG  183 (245)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHH--hhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence                 678888999887654443  2344544  3999999999  999999999999 9999999988 9999998778


Q ss_pred             CeEEEEEecccccccChHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      ..++    +++|.+.+.+..|+.+
T Consensus       184 r~vi----FSSH~m~EvealCDrv  203 (245)
T COG4555         184 RAVI----FSSHIMQEVEALCDRV  203 (245)
T ss_pred             cEEE----EecccHHHHHHhhheE
Confidence            8775    5689999999888743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=8.5e-26  Score=193.79  Aligned_cols=137  Identities=14%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCcccChhhhhh---------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y~~~~~i~e~i~---------------   58 (248)
                      -+++|+||+|||||||+|+++|+.+|++|+|.+.|..+..         |+....|..||++|+.               
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~  109 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE  109 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence            4689999999999999999999999999999999976421         3333456678888874               


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (248)
                       ++++++.+||........  ..+++++  +++|||+++.  +|++|++|||++ ||..++..+...+++-+.+.++|++
T Consensus       110 ~a~~~L~~VgL~~~~~~~P--~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl  185 (248)
T COG1116         110 RAKELLELVGLAGFEDKYP--HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL  185 (248)
T ss_pred             HHHHHHHHcCCcchhhcCc--cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence             778899999988765543  3577765  4999999999  999999999998 9999999988555555566788888


Q ss_pred             EEEecccccccCh
Q 025795          135 AVYLLDSQFITDV  147 (248)
Q Consensus       135 ~v~l~d~~~~~d~  147 (248)
                      +|    +|.+.+.
T Consensus       186 lV----THdi~EA  194 (248)
T COG1116         186 LV----THDVDEA  194 (248)
T ss_pred             EE----eCCHHHH
Confidence            77    4555443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=1.8e-25  Score=190.84  Aligned_cols=130  Identities=23%  Similarity=0.237  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+++|+||+|||||||++++.|+.+|++|.|.+.|.|...                  |.+..-|++|+.|++.      
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~  111 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA  111 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence            3689999999999999999999999999999999977642                  3444467889999987      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+|+++.....++ ..++++  +|++||||++.  +|++++.||||. ||..+.+.++ +++++
T Consensus       112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~  187 (226)
T COG1136         112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRE  187 (226)
T ss_pred             CCChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHH
Confidence                      4566777899866553333 345554  45999999999  999999999998 9999999999 99999


Q ss_pred             HHhC-CCeEEEE
Q 025795          126 LKSR-NFNVCAV  136 (248)
Q Consensus       126 l~~~-~~~ii~v  136 (248)
                      +.++ |.++++|
T Consensus       188 ~~~~~g~tii~V  199 (226)
T COG1136         188 LNKERGKTIIMV  199 (226)
T ss_pred             HHHhcCCEEEEE
Confidence            9754 8888777

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=6.2e-25  Score=188.43  Aligned_cols=142  Identities=21%  Similarity=0.262  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+.+++||+||||||++|+|.++++|++|+|.++|.+...              +.++.+|.+||.++|.          
T Consensus        28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k  107 (309)
T COG1125          28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK  107 (309)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence            4678999999999999999999999999999999988754              4455578999999986          


Q ss_pred             ------HHHHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 ------LEDVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ------~~~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                            ++|.|+.+||.|. -...|+. .++++  +|+-++|||+.  +|+++++|||++ |||.++..+. +.+.++++
T Consensus       108 ~~i~~r~~ELl~lvgL~p~~~~~RyP~-eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~  183 (309)
T COG1125         108 ERIKKRADELLDLVGLDPSEYADRYPH-ELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQK  183 (309)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHhhcCch-hcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHH
Confidence                  7899999999984 4445553 45554  35899999999  999999999998 9999999988 77777765


Q ss_pred             -CCCeEEEEEecccccccChHHHHH
Q 025795          129 -RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 -~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                       .++|+++|    +|.+.+..+..+
T Consensus       184 ~l~kTivfV----THDidEA~kLad  204 (309)
T COG1125         184 ELGKTIVFV----THDIDEALKLAD  204 (309)
T ss_pred             HhCCEEEEE----ecCHHHHHhhhc
Confidence             58999877    466666655544

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.93  E-value=4.5e-25  Score=197.99  Aligned_cols=146  Identities=17%  Similarity=0.201  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..             +...+++.++++|++.           
T Consensus        34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  113 (306)
T PRK13537         34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA  113 (306)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999987632             2223345678888764           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++||||||+ ||+.+++.++ +++++++++|
T Consensus       114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g  188 (306)
T PRK13537        114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG  188 (306)
T ss_pred             HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 34667788887543333  34566654  3899999999  999999999999 9999999999 9999997778


Q ss_pred             CeEEEEEecccccccChHHHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGCMAS  157 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (248)
                      .+++++    +|.+.+...+|+.+++.
T Consensus       189 ~till~----sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        189 KTILLT----THFMEEAERLCDRLCVI  211 (306)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEEE
Confidence            888654    78888777777755443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.7e-25  Score=196.53  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=126.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~-------   58 (248)
                      -++||+|++|+|||||+|++.++.+|++|+|.++|.|...                 +++......||.+++.       
T Consensus        33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag  112 (339)
T COG1135          33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG  112 (339)
T ss_pred             cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence            4789999999999999999999999999999999977632                 3333334567887775       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+||.+..... +. .++++  +++.|||||+.  +|++|+.||||+ |||.+.+.++ ++++++
T Consensus       113 ~~k~ei~~RV~elLelVgL~dk~~~y-P~-qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~I  187 (339)
T COG1135         113 VPKAEIKQRVAELLELVGLSDKADRY-PA-QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDI  187 (339)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhccC-ch-hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHH
Confidence                     78899999999665443 32 45554  45999999999  999999999999 9999999999 999999


Q ss_pred             Hh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeec
Q 025795          127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS  173 (248)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vls  173 (248)
                      ++ .|.|+++|    +|.+.=..++|+.+.....+.+.-..+..+||+
T Consensus       188 n~~lglTIvlI----THEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         188 NRELGLTIVLI----THEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHHcCCEEEEE----echHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            85 59998877    466666677777665555555444445555553

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=7.9e-25  Score=186.43  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~-------   58 (248)
                      -+.+|+||+|||||||+|+|.|+++|++|+|.+.|.+...                 |.-..+.+++|+|++.       
T Consensus        35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~  114 (263)
T COG1127          35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT  114 (263)
T ss_pred             cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence            4789999999999999999999999999999999988643                 1122244789999886       


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +..-++.+||.+..+..++. .++++++  ++||||++.  +|+++++||||+ |||.+...+- ++|++
T Consensus       115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-ELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~  190 (263)
T COG1127         115 KLPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE  190 (263)
T ss_pred             cCCHHHHHHHHHHHHHhcCCChhhhhhCch-hhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence                      44556778998886666653 5667764  999999999  999999999999 9999998888 99999


Q ss_pred             HHh-CCCeEEEE
Q 025795          126 LKS-RNFNVCAV  136 (248)
Q Consensus       126 l~~-~~~~ii~v  136 (248)
                      +++ -|.|+++|
T Consensus       191 L~~~lg~T~i~V  202 (263)
T COG1127         191 LNDALGLTVIMV  202 (263)
T ss_pred             HHHhhCCEEEEE
Confidence            986 48887766

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.1e-25  Score=189.26  Aligned_cols=145  Identities=19%  Similarity=0.222  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------C------CCC---CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------N------FDY---PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~--------~------~~y---~~~~~i~e~i~-------   58 (248)
                      -++||+|++|||||||+++++|+.+|+.|+|.++|......        .      -||   .|..+|++.+.       
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~  113 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG  113 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence            47899999999999999999999999999999999644321        1      122   45567776664       


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+||.+.-...++.+ +++++  |++|||||..  +|++||+||||+ ||...+.+++ +++.++++
T Consensus       114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~  189 (252)
T COG1124         114 LSKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK  189 (252)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHhcCchh-cChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence                   688999999998876677654 66664  4999999999  999999999999 9999999999 99999975


Q ss_pred             -CCCeEEEEEecccccccChHHHHHHHH
Q 025795          129 -RNFNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus       129 -~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                       .+.+.++|    +|.+.=...+|+.+.
T Consensus       190 ~~~lt~l~I----sHdl~~v~~~cdRi~  213 (252)
T COG1124         190 ERGLTYLFI----SHDLALVEHMCDRIA  213 (252)
T ss_pred             hcCceEEEE----eCcHHHHHHHhhhee
Confidence             47787766    566655566666443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.92  E-value=1.2e-24  Score=194.76  Aligned_cols=144  Identities=17%  Similarity=0.255  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..      ..++|       .+.+++++++.           
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~   99 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD   99 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999976521      12332       34567777664           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus       100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g  174 (302)
T TIGR01188       100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG  174 (302)
T ss_pred             HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 45678888887543332  34566654  4899999999  999999999999 9999999999 8999987678


Q ss_pred             CeEEEEEecccccccChHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      .+++++    +|...+...+|+.++
T Consensus       175 ~tvi~~----sH~~~~~~~~~d~v~  195 (302)
T TIGR01188       175 VTILLT----THYMEEADKLCDRIA  195 (302)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEE
Confidence            887655    677766666665443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.92  E-value=1.6e-24  Score=196.98  Aligned_cols=146  Identities=16%  Similarity=0.253  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..++       +++.+++++++.           
T Consensus        68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  147 (340)
T PRK13536         68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR  147 (340)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999987532      1222       234567777764           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++.+.|
T Consensus       148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g  222 (340)
T PRK13536        148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG  222 (340)
T ss_pred             HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence                 33567788887543333  34566654  3899999999  999999999999 9999999999 9999997778


Q ss_pred             CeEEEEEecccccccChHHHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGCMAS  157 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (248)
                      .+++++    +|.+.+...+|+.+++.
T Consensus       223 ~tilis----SH~l~e~~~~~d~i~il  245 (340)
T PRK13536        223 KTILLT----THFMEEAERLCDRLCVL  245 (340)
T ss_pred             CEEEEE----CCCHHHHHHhCCEEEEE
Confidence            887654    78887777777755443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.91  E-value=2.2e-24  Score=183.63  Aligned_cols=129  Identities=14%  Similarity=0.218  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.+.|       .+..++++++.       
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  109 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG  109 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999876421          12333       23457776653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~  184 (216)
T TIGR00960       110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF  184 (216)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     35577888887543322  24466554  4899999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      ++.|.+++++
T Consensus       185 ~~~~~tii~v  194 (216)
T TIGR00960       185 NRRGTTVLVA  194 (216)
T ss_pred             HHCCCEEEEE
Confidence            7667777665

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.91  E-value=2.8e-24  Score=177.30  Aligned_cols=131  Identities=15%  Similarity=0.212  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC--------------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y--------------~~~~~i~e~i~-------   58 (248)
                      -.+.++||+|||||||+|.|++..+|++|+|.++|.|...   ..+||              -++.|+.|++.       
T Consensus        29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G  108 (223)
T COG2884          29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG  108 (223)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence            4578999999999999999999999999999999998753   23332              34668888885       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                               +.++++.+||.........--...++++++||||++.  +|++||.||||. |||....+++ ++++++.+
T Consensus       109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeeinr  185 (223)
T COG2884         109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEINR  185 (223)
T ss_pred             CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHhh
Confidence                     7889999999876543332212223466999999999  999999999997 9999999999 99999998


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      .|.|+++.
T Consensus       186 ~GtTVl~A  193 (223)
T COG2884         186 LGTTVLMA  193 (223)
T ss_pred             cCcEEEEE
Confidence            99998765

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=1.2e-24  Score=196.82  Aligned_cols=129  Identities=17%  Similarity=0.195  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++++||+||||||++|+|+|+.+|++|+|.++|.+...            |+...+|.+||+++|.            
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~  111 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA  111 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHH
Confidence            3688999999999999999999999999999999987643            3334478899999974            


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR  129 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~  129 (248)
                           +.++++.+++++.+.+..  ..++++  ++++|||+|+.  +|+++++|||.+ ||...+.++. .-++++. +.
T Consensus       112 ~i~~rv~e~L~lV~L~~~~~R~p--~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~  186 (352)
T COG3842         112 EIKARVEEALELVGLEGFADRKP--HQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQREL  186 (352)
T ss_pred             HHHHHHHHHHHHcCchhhhhhCh--hhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhc
Confidence                 788899999999876664  345555  45999999999  999999999999 9999999988 5556655 46


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |.|.++|
T Consensus       187 giT~i~V  193 (352)
T COG3842         187 GITFVYV  193 (352)
T ss_pred             CCeEEEE
Confidence            8888777

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.91  E-value=8.9e-25  Score=198.73  Aligned_cols=145  Identities=14%  Similarity=0.203  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~  111 (343)
T TIGR02314        32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (343)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999976531          12333       33567777764       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l  186 (343)
T TIGR02314       112 TPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEI  186 (343)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     45778889997654333  24566654  4999999999  999999999999 9999999999 999998


Q ss_pred             HhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      .++ |.+++++    +|.+.....+|+.+++
T Consensus       187 ~~~~g~tiili----TH~~~~v~~~~d~v~v  213 (343)
T TIGR02314       187 NRRLGLTILLI----THEMDVVKRICDCVAV  213 (343)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence            764 8888766    5666666666654443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.91  E-value=8.2e-25  Score=196.85  Aligned_cols=128  Identities=21%  Similarity=0.194  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh-------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS-------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~-------------   58 (248)
                      +++++||||||||||+|+|+|+.+|++|+|.++|.+...            |+...+|.+||++++.             
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei  110 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI  110 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence            578999999999999999999999999999999976532            4445578899999986             


Q ss_pred             ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCC
Q 025795           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF  131 (248)
Q Consensus        59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~  131 (248)
                         ++++.+.+++.+...+..  ..+++++  ++++|||++.  +|++++||||.+ ||...+..+. .-++++.+ .|.
T Consensus       111 ~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~  185 (338)
T COG3839         111 DKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGT  185 (338)
T ss_pred             HHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCC
Confidence               778999999998766653  3466654  5999999999  999999999999 9999998877 66777765 477


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      |++.|
T Consensus       186 T~IYV  190 (338)
T COG3839         186 TTIYV  190 (338)
T ss_pred             cEEEE
Confidence            77766

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.91  E-value=3.9e-24  Score=181.78  Aligned_cols=129  Identities=18%  Similarity=0.175  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE  106 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence            4689999999999999999999999999999999876521     22333       22456766653            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  181 (213)
T cd03259         107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG  181 (213)
T ss_pred             HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34567788886543222  23466554  4899999999  999999999999 9999999999 88888865 47


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       182 ~tii~~  187 (213)
T cd03259         182 ITTIYV  187 (213)
T ss_pred             CEEEEE
Confidence            777655

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=2.7e-24  Score=183.49  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=126.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CcccChhhhhh--------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS--------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~--------------   58 (248)
                      -+.|++||||+||||.+|+|.|+++|++|+|.|+|.+...   ..++|       .+.+++.|.+.              
T Consensus        29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~  108 (300)
T COG4152          29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ  108 (300)
T ss_pred             eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence            4689999999999999999999999999999999987643   34555       45788888875              


Q ss_pred             --HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        59 --~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                        +..||+++++..+....  .+.++++  +...+..++.+  +|+++|||||++ |||.+.+-+- +.+.+++++|.+|
T Consensus       109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI  183 (300)
T COG4152         109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI  183 (300)
T ss_pred             HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence              78899999998765544  4556664  33666778888  999999999999 9999986666 8999998899999


Q ss_pred             EEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  168 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~  168 (248)
                      +    +++|.+...+..|+.+++...+...+..+.
T Consensus       184 i----fSsH~Me~vEeLCD~llmL~kG~~V~~G~v  214 (300)
T COG4152         184 I----FSSHRMEHVEELCDRLLMLKKGQTVLYGTV  214 (300)
T ss_pred             E----EecchHHHHHHHhhhhheecCCceEEeccH
Confidence            5    568999999999998877655544333333

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.91  E-value=1.5e-24  Score=177.87  Aligned_cols=143  Identities=19%  Similarity=0.236  Sum_probs=114.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||+|||||||++.++|+..|.+|.|+++|.|...     +.+       ..+..+||.+++.            
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~  105 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE  105 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence            4789999999999999999999999999999999987532     111       1123456777664            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++.+..++|++....+..  ..++++  ++++|||+++.  +.+++++|||++ |||.-+.++. .++..+.. ++
T Consensus       106 ~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~  180 (231)
T COG3840         106 QREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK  180 (231)
T ss_pred             HHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence                788999999988765553  345555  45999999999  899999999999 9999999999 99999875 58


Q ss_pred             CeEEEEEecccccccChHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      .|+++|    +|...|.....+.+
T Consensus       181 ~TllmV----TH~~~Da~~ia~~~  200 (231)
T COG3840         181 MTLLMV----THHPEDAARIADRV  200 (231)
T ss_pred             CEEEEE----eCCHHHHHHhhhce
Confidence            888777    57777777665544

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.91  E-value=7e-24  Score=180.70  Aligned_cols=129  Identities=21%  Similarity=0.272  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++++++.      
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  110 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA  110 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence            4789999999999999999999999999999999875421           12333       23456766653      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~  185 (218)
T cd03255         111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE  185 (218)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      45677788887543222  24466554  4899999999  999999999999 9999999998 88999


Q ss_pred             HHh-CCCeEEEE
Q 025795          126 LKS-RNFNVCAV  136 (248)
Q Consensus       126 l~~-~~~~ii~v  136 (248)
                      +.+ .|.+++++
T Consensus       186 ~~~~~~~tii~~  197 (218)
T cd03255         186 LNKEAGTTIVVV  197 (218)
T ss_pred             HHHhcCCeEEEE
Confidence            876 57787666

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.91  E-value=1.2e-23  Score=179.16  Aligned_cols=140  Identities=17%  Similarity=0.256  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      +.+.       +.+..++++++.           
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  111 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD  111 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence            4689999999999999999999999999999999876431      1122       233457777663           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++|
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~  186 (218)
T cd03266         112 ELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG  186 (218)
T ss_pred             HHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence                 35577888886543222  34465554  3899999999  999999999999 9999999999 8898887667


Q ss_pred             CeEEEEEecccccccChHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .+++++    +|...+...++
T Consensus       187 ~tii~~----tH~~~~~~~~~  203 (218)
T cd03266         187 KCILFS----THIMQEVERLC  203 (218)
T ss_pred             CEEEEE----eCCHHHHHHhc
Confidence            787666    45544444443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.91  E-value=8.7e-24  Score=189.30  Aligned_cols=143  Identities=17%  Similarity=0.249  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..      ..+.|       .+..++++++.           
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  110 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR  110 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999876521      12222       33567777664           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+.|
T Consensus       111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g  185 (303)
T TIGR01288       111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG  185 (303)
T ss_pred             HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence                 23467777886543332  34566654  4899999999  999999999999 9999999999 8999987778


Q ss_pred             CeEEEEEecccccccChHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      .+++++    +|...+...+++.+
T Consensus       186 ~til~~----sH~~~~~~~~~d~i  205 (303)
T TIGR01288       186 KTILLT----THFMEEAERLCDRL  205 (303)
T ss_pred             CEEEEE----CCCHHHHHHhCCEE
Confidence            887655    56666556555543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=5.1e-24  Score=178.54  Aligned_cols=161  Identities=17%  Similarity=0.224  Sum_probs=120.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+.+|+||||||||||+|.|+|.+.|++|++.++|.++..              ++......++++|.+.          
T Consensus        28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~  107 (259)
T COG4559          28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR  107 (259)
T ss_pred             cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence            4689999999999999999999999999999999987632              2222222346666664          


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCC----CEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDD----DYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p----~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                              ++.+|+..++....++.|..-.-.+++++.+||.|++...|    +++++||||+ ||+..+...+ ++.+.
T Consensus       108 ~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~  186 (259)
T COG4559         108 EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQ  186 (259)
T ss_pred             CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHH
Confidence                    67788899988877777654334445679999999976443    5999999999 9999999999 99999


Q ss_pred             HHhCCCeEEEEEecccccccChHHHHHHHHHHHHH-HHhhCCCe
Q 025795          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPH  168 (248)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~-~~~~~~p~  168 (248)
                      +.++|..+++| ++|   +.-.+.|++.+++...+ .+..+.|.
T Consensus       187 la~~g~~V~~V-LHD---LNLAA~YaDrivll~~Grv~a~g~p~  226 (259)
T COG4559         187 LAREGGAVLAV-LHD---LNLAAQYADRIVLLHQGRVIASGSPQ  226 (259)
T ss_pred             HHhcCCcEEEE-Ecc---chHHHHhhheeeeeeCCeEeecCCHH
Confidence            99888888777 344   44446777777665433 33444444

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.91  E-value=1e-23  Score=180.07  Aligned_cols=140  Identities=14%  Similarity=0.250  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      +.+.       +.+..++++++.           
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  106 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA  106 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence            4689999999999999999999999999999999865421      1122       233456666552           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (248)
                           +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ 
T Consensus       107 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~  181 (220)
T cd03265         107 ERRERIDELLDFVGLLEAADRL--VKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF  181 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence                 45677888886543222  34566654  3899999999  999999999999 9999999998 888888765 


Q ss_pred             CCeEEEEEecccccccChHHHH
Q 025795          130 NFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      |.+++++    +|...+...++
T Consensus       182 ~~tvi~~----tH~~~~~~~~~  199 (220)
T cd03265         182 GMTILLT----THYMEEAEQLC  199 (220)
T ss_pred             CCEEEEE----eCCHHHHHHhC
Confidence            7777665    45554444443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.91  E-value=1.5e-23  Score=178.19  Aligned_cols=140  Identities=19%  Similarity=0.252  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +.+.|       .+..++++++.       
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  108 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG  108 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876531          12333       22356666553       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  183 (214)
T TIGR02673       109 KKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL  183 (214)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34567778886532222  24465554  4899999999  999999999999 9999999999 889888


Q ss_pred             HhCCCeEEEEEecccccccChHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .++|.+++++    +|...+...++
T Consensus       184 ~~~~~tii~~----tH~~~~~~~~~  204 (214)
T TIGR02673       184 NKRGTTVIVA----THDLSLVDRVA  204 (214)
T ss_pred             HHcCCEEEEE----eCCHHHHHHhc
Confidence            7667777665    45554444433

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.1e-24  Score=182.34  Aligned_cols=157  Identities=15%  Similarity=0.206  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~-------   58 (248)
                      -.++|+||+|||||||+|+|.|+..|+.|+|.++|.++..                 +.++..+.+++.+++.       
T Consensus        31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~  110 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT  110 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence            3689999999999999999999999999999999987643                 3344455666666663       


Q ss_pred             -----------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                       +-+.++++|+.+.....  .+.++++  +|++|||+|++  +|++++.|||++ |||.+.+.+
T Consensus       111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V  186 (258)
T COG3638         111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV  186 (258)
T ss_pred             hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence                             56778888888765444  4567765  45999999999  999999999998 999999999


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH  168 (248)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~  168 (248)
                      | ++++++.+ .|.|+++.    .|.+.-..+|+..++-...+.+.++.|.
T Consensus       187 m-~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~  232 (258)
T COG3638         187 M-DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPA  232 (258)
T ss_pred             H-HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCCh
Confidence            9 99999875 57887543    4556556788887766665555555554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.91  E-value=1.7e-23  Score=177.43  Aligned_cols=141  Identities=14%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCCCcccChhhhhh--------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS--------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y~~~~~i~e~i~--------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          +...+.+..++++++.              
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~  106 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR  106 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence            4689999999999999999999999999999999876421          1222233457776653              


Q ss_pred             --HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        59 --~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                        +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+++.++
T Consensus       107 ~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti  181 (210)
T cd03269         107 RRIDEWLERLELSEYANKR--VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV  181 (210)
T ss_pred             HHHHHHHHHcCChHHHhCc--HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence              34567777876432222  24466654  3889999999  999999999999 9999999999 8888887667777


Q ss_pred             EEEEecccccccChHHHHH
Q 025795          134 CAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (248)
                      +++    +|...+...+++
T Consensus       182 i~~----sH~~~~~~~~~d  196 (210)
T cd03269         182 ILS----THQMELVEELCD  196 (210)
T ss_pred             EEE----CCCHHHHHHhhh
Confidence            655    455544444433

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.91  E-value=7.4e-24  Score=181.02  Aligned_cols=140  Identities=18%  Similarity=0.185  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CcccChhhhhh---------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS---------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-------~~~~~i~e~i~---------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...  +.+.|       .+..++++++.               
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  110 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE  110 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            4789999999999999999999999999999999876521  22222       23456766653               


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.++
T Consensus       111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti  185 (220)
T cd03293         111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV  185 (220)
T ss_pred             HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence             34567788886532222  23455554  4899999999  999999999999 9999999999 88888854 47777


Q ss_pred             EEEEecccccccChHHHH
Q 025795          134 CAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~  151 (248)
                      +++    +|...+...++
T Consensus       186 ii~----sH~~~~~~~~~  199 (220)
T cd03293         186 LLV----THDIDEAVFLA  199 (220)
T ss_pred             EEE----ecCHHHHHHhC
Confidence            665    45554334443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=5.7e-24  Score=176.55  Aligned_cols=140  Identities=22%  Similarity=0.350  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------C-----------------CCCCCc-c
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------E-----------------NFDYPV-A   50 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~-----------------~~~y~~-~   50 (248)
                      -+++++||||+|||||+.+++.+++.++|+|+++|++.+.              +                 .+||.+ .
T Consensus        28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR  107 (252)
T COG4604          28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR  107 (252)
T ss_pred             ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence            4689999999999999999999999999999999988643              1                 223321 2


Q ss_pred             cChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           51 MDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        51 ~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      ++-.+...++++++.++|.+...+.  ++.++++++  ..+|..+++  +.+|++||||.+ ||......+| ++++++.
T Consensus       108 lt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla  182 (252)
T COG4604         108 LTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLA  182 (252)
T ss_pred             CchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHH
Confidence            3344444489999999999876655  677888765  788999999  999999999998 9999999999 9999998


Q ss_pred             h-CCCeEEEEEecccccccChH
Q 025795          128 S-RNFNVCAVYLLDSQFITDVT  148 (248)
Q Consensus       128 ~-~~~~ii~v~l~d~~~~~d~~  148 (248)
                      . .|+++++| ++|..+.+-.+
T Consensus       183 ~el~KtiviV-lHDINfAS~Ys  203 (252)
T COG4604         183 DELGKTIVVV-LHDINFASCYS  203 (252)
T ss_pred             HHhCCeEEEE-EecccHHHhhh
Confidence            5 48888776 56776665443

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.91  E-value=1.5e-23  Score=177.27  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC--------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY--------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y--------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..    +.+.|        ....+++|++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~  106 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ  106 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence            4789999999999999999999999999999999876421    12222        11346766653            


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus       107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~  181 (205)
T cd03226         107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV  181 (205)
T ss_pred             HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence            45678888987643332  23466554  4899999999  999999999999 9999999998 889988766777766


Q ss_pred             EEecccccccChHHH
Q 025795          136 VYLLDSQFITDVTKF  150 (248)
Q Consensus       136 v~l~d~~~~~d~~~~  150 (248)
                      +    +|...+...+
T Consensus       182 ~----sH~~~~~~~~  192 (205)
T cd03226         182 I----THDYEFLAKV  192 (205)
T ss_pred             E----eCCHHHHHHh
Confidence            5    4554433333

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=1.1e-23  Score=181.73  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  106 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT  106 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence            4689999999999999999999999999999999865421          12223       23457766653       


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ +++++
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  181 (235)
T cd03261         107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS  181 (235)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence                      34567788886543222  24566654  4899999999  999999999999 9999999999 88898


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHH
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      +.+ .|.+++++    +|...+...++
T Consensus       182 ~~~~~~~tvi~v----sH~~~~~~~~~  204 (235)
T cd03261         182 LKKELGLTSIMV----THDLDTAFAIA  204 (235)
T ss_pred             HHHhcCcEEEEE----ecCHHHHHHhc
Confidence            876 47787665    45554334333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.91  E-value=1.1e-23  Score=178.99  Aligned_cols=129  Identities=18%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~  107 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG  107 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876421          12222       23456776653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~  182 (214)
T cd03292         108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI  182 (214)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     34567778886532222  23455554  4899999999  999999999999 9999999998 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      .++|.+++++
T Consensus       183 ~~~~~tiiiv  192 (214)
T cd03292         183 NKAGTTVVVA  192 (214)
T ss_pred             HHcCCEEEEE
Confidence            6667777666

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=192.50  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            +.....+.+++++++.            
T Consensus        31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~  110 (356)
T PRK11650         31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE  110 (356)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence            3689999999999999999999999999999999976532            2222345678888774            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          ++++++.+|+.+.....  ...+++++  +++|||+++.  +|+++|+|||++ ||+.++..+. +.++++.++ |
T Consensus       111 ~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  185 (356)
T PRK11650        111 IEERVAEAARILELEPLLDRK--PRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLK  185 (356)
T ss_pred             HHHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45678888997654443  24566654  4999999999  999999999999 9999999988 888888654 8


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       186 ~tii~v----THd~~ea~~l~D  203 (356)
T PRK11650        186 TTSLYV----THDQVEAMTLAD  203 (356)
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            888766    455544444433

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.90  E-value=2.4e-23  Score=176.27  Aligned_cols=140  Identities=15%  Similarity=0.225  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.       +.+..++++++.            
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  106 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR  106 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence            4689999999999999999999999999999999876531     1122       233567777663            


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      ++++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++++.+.++++
T Consensus       107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~  181 (208)
T cd03268         107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI  181 (208)
T ss_pred             HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence            45677888886543222  34455554  3899999999  999999999999 9999999998 888888766777765


Q ss_pred             EEecccccccChHHHH
Q 025795          136 VYLLDSQFITDVTKFI  151 (248)
Q Consensus       136 v~l~d~~~~~d~~~~~  151 (248)
                      +    +|...+...++
T Consensus       182 ~----tH~~~~~~~~~  193 (208)
T cd03268         182 S----SHLLSEIQKVA  193 (208)
T ss_pred             E----cCCHHHHHHhc
Confidence            5    45554444333

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.90  E-value=4.2e-24  Score=184.12  Aligned_cols=141  Identities=18%  Similarity=0.211  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+..++++++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~  106 (236)
T cd03219          27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS  106 (236)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence            4689999999999999999999999999999999876421        12333       23456666542         


Q ss_pred             -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                       +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  182 (236)
T cd03219         107 GLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL  182 (236)
T ss_pred             ccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence                             34566777876543222  34566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      . ++++++.+.|.+++++    +|...+...+++
T Consensus       183 ~-~~l~~~~~~~~tii~v----sH~~~~~~~~~d  211 (236)
T cd03219         183 A-ELIRELRERGITVLLV----EHDMDVVMSLAD  211 (236)
T ss_pred             H-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            9 8888887667777655    455544444433

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.90  E-value=1.3e-23  Score=180.61  Aligned_cols=139  Identities=17%  Similarity=0.224  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (232)
T cd03218          27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS  106 (232)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999875421        12333       23456766653         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             ++++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~  181 (232)
T cd03218         107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD  181 (232)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34567777876533222  23455554  4899999999  999999999999 9999999999 88988876


Q ss_pred             CCCeEEEEEecccccccChHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+.+++++    +|...+...+
T Consensus       182 ~~~tii~~----sH~~~~~~~~  199 (232)
T cd03218         182 RGIGVLIT----DHNVRETLSI  199 (232)
T ss_pred             CCCEEEEE----eCCHHHHHHh
Confidence            67777655    4554433433

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.90  E-value=1.1e-23  Score=178.69  Aligned_cols=140  Identities=20%  Similarity=0.216  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|        .+..++++++.         
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~  107 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP  107 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999875421       12222        12346666543         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~  182 (211)
T cd03225         108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA  182 (211)
T ss_pred             HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34567778886432222  23455554  4899999999  999999999999 9999999999 88888876


Q ss_pred             CCCeEEEEEecccccccChHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      +|.+++++    +|...+...++
T Consensus       183 ~~~tvi~~----sH~~~~~~~~~  201 (211)
T cd03225         183 EGKTIIIV----THDLDLLLELA  201 (211)
T ss_pred             cCCEEEEE----eCCHHHHHHhC
Confidence            67777655    45554444433

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.90  E-value=1.3e-23  Score=194.64  Aligned_cols=145  Identities=19%  Similarity=0.264  Sum_probs=110.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.+.|.++..       ..+.|       .+.+++++++.          
T Consensus        30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~  109 (402)
T PRK09536         30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF  109 (402)
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence            4689999999999999999999999999999999977532       11222       23455655441          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+++.+.....  ...+++++  ++.||++|++  +|+++||||||+ ||+.++..++ +++++
T Consensus       110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~  184 (402)
T PRK09536        110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR  184 (402)
T ss_pred             cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence                      56778888987654333  23455554  4999999999  999999999999 9999999999 99999


Q ss_pred             HHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795          126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      +.++|.+++++    +|.+.+..++++.+++
T Consensus       185 l~~~g~TIIiv----sHdl~~~~~~adrii~  211 (402)
T PRK09536        185 LVDDGKTAVAA----IHDLDLAARYCDELVL  211 (402)
T ss_pred             HHhcCCEEEEE----ECCHHHHHHhCCEEEE
Confidence            97667777655    5666666666665443

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=2.4e-23  Score=174.01  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.| +       ...++++++.       
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~   98 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG   98 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999866421         11222 1       1236666553       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus        99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~  173 (190)
T TIGR01166        99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL  173 (190)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                     34567778886543322  23455553  4899999999  999999999999 9999999998 888988


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      +++|.+++++
T Consensus       174 ~~~~~tili~  183 (190)
T TIGR01166       174 RAEGMTVVIS  183 (190)
T ss_pred             HHcCCEEEEE
Confidence            7667787666

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.90  E-value=2.2e-23  Score=178.94  Aligned_cols=129  Identities=18%  Similarity=0.072  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhh----------------HHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME   64 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~----------------~~~~m~   64 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...  ....+.+..++++++.                +.++++
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~  128 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE  128 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999876431  2233455667777653                344566


Q ss_pred             HhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           65 ELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+++.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.+++.+. ++++++.+++.+++++
T Consensus       129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~  198 (224)
T cd03220         129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV  198 (224)
T ss_pred             HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            67776543332  24455554  3889999999  999999999999 9999999999 8888886667777665

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.90  E-value=2.2e-23  Score=186.53  Aligned_cols=144  Identities=19%  Similarity=0.292  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..      +.+.       +.+.++++|++.           
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~  108 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ  108 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence            4789999999999999999999999999999999976532      1222       234567777763           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++++ +
T Consensus       109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~  182 (301)
T TIGR03522       109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D  182 (301)
T ss_pred             HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence                 45667788888654333  24466654  4899999999  999999999999 9999999988 88888854 6


Q ss_pred             CeEEEEEecccccccChHHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      .+++++    +|...+...+|+.++.
T Consensus       183 ~tiii~----sH~l~~~~~~~d~i~~  204 (301)
T TIGR03522       183 KTIILS----THIMQEVEAICDRVII  204 (301)
T ss_pred             CEEEEE----cCCHHHHHHhCCEEEE
Confidence            676544    6777777777665433

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.1e-24  Score=186.47  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC---Cc-----ccChhhhhh---------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY---PV-----AMDIRELIS---------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y---~~-----~~~i~e~i~---------   58 (248)
                      .++|+||||||||||+++++|+++|++|.|.++|.+...        +.++|   .|     .-+|.+-+.         
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~  111 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP  111 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence            689999999999999999999999999999999977431        22222   11     224444442         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             ++++++.+|+.......  ...+++++  +++||.+|+.  +|+++||||||+ ||+.+++.++ +++++|.+
T Consensus       112 ~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~  186 (235)
T COG1122         112 REEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLKE  186 (235)
T ss_pred             HHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHh
Confidence                   77889999998764333  34566654  4999999999  999999999999 9999999999 99999987


Q ss_pred             C-CCeEEEEEecccccccChHHHHH
Q 025795          129 R-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      . |.+++++    +|.+.....+++
T Consensus       187 ~~~~tii~~----tHd~~~~~~~ad  207 (235)
T COG1122         187 EGGKTIIIV----THDLELVLEYAD  207 (235)
T ss_pred             cCCCeEEEE----eCcHHHHHhhCC
Confidence            6 6777655    566655555544

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.90  E-value=2.8e-23  Score=176.41  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE  106 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence            4689999999999999999999999999999999876422     12223       23457776653            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.+++.+. ++++++.+ .+
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  181 (213)
T cd03301         107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG  181 (213)
T ss_pred             HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34567778876432222  23455554  4899999999  999999999999 9999999999 88998875 47


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       182 ~tvi~~  187 (213)
T cd03301         182 TTTIYV  187 (213)
T ss_pred             CEEEEE
Confidence            777665

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.90  E-value=3.7e-23  Score=175.52  Aligned_cols=139  Identities=20%  Similarity=0.252  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-------CcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.|       .+..++++++.        
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~  106 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG  106 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence            4789999999999999999999999999999999875421         22333       22456666552        


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~  181 (213)
T cd03262         107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL  181 (213)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence                     34567777876532222  23455554  3899999999  999999999999 9999999988 889998


Q ss_pred             HhCCCeEEEEEecccccccChHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+.|.+++++    +|...+...+
T Consensus       182 ~~~~~tvi~~----sh~~~~~~~~  201 (213)
T cd03262         182 AEEGMTMVVV----THEMGFAREV  201 (213)
T ss_pred             HHcCCEEEEE----eCCHHHHHHh
Confidence            7667777655    3544433333

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=3e-24  Score=183.33  Aligned_cols=129  Identities=16%  Similarity=0.199  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~---------   58 (248)
                      -++++||||||||||++++++|+++|++|+|.+.|.|...               |....++++|+-|++.         
T Consensus        31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~  110 (250)
T COG0411          31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL  110 (250)
T ss_pred             eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence            4799999999999999999999999999999999987642               3344466788877764         


Q ss_pred             -------------------HHHHHHHhCCCCCCchhhhHHhhhhh-H-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDN-L-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        59 -------------------~~~~m~~~~L~~~~~~~~~~~~l~~~-~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                                         +.++++.+||.+.......  .++.+ + ++.||++|+.  +|++|++|||.+ +.+....
T Consensus       111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~  186 (250)
T COG0411         111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE  186 (250)
T ss_pred             hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence                               4567788899877554422  23333 2 2899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEE
Q 025795          117 PVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ++. ++++++++ .|.++++|
T Consensus       187 ~l~-~~i~~i~~~~g~tillI  206 (250)
T COG0411         187 ELA-ELIRELRDRGGVTILLI  206 (250)
T ss_pred             HHH-HHHHHHHhcCCcEEEEE
Confidence            999 99999987 46888777

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.90  E-value=4.2e-23  Score=174.31  Aligned_cols=129  Identities=18%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...      ..+.|       .+..++++++.          +
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  106 (201)
T cd03231          27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV  106 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence            4789999999999999999999999999999999876531      12222       23457777663          5


Q ss_pred             HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++++.+++.+.....  ...+++++  ++.+|++++.  +|+++|+||||+ ||+.+++.+. ++++++.++|.+++++
T Consensus       107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~  181 (201)
T cd03231         107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT  181 (201)
T ss_pred             HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            6778888887543222  34455554  4899999999  999999999999 9999999998 8888887667777655

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.90  E-value=2.4e-23  Score=176.61  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~  104 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE  104 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence            4789999999999999999999999999999999876421     11222       23456666542            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+ .+
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~  179 (211)
T cd03298         105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK  179 (211)
T ss_pred             HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45667788886532222  23455554  3899999999  999999999999 9999999999 88888865 47


Q ss_pred             CeEEEEEecccccccChHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .+++++    +|...+...++
T Consensus       180 ~tii~~----sH~~~~~~~~~  196 (211)
T cd03298         180 MTVLMV----THQPEDAKRLA  196 (211)
T ss_pred             CEEEEE----ecCHHHHHhhh
Confidence            787665    45554444433

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.90  E-value=3.4e-23  Score=189.17  Aligned_cols=141  Identities=14%  Similarity=0.163  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++....|.+++++++.            
T Consensus        31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~  110 (353)
T TIGR03265        31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE  110 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence            4689999999999999999999999999999999976532            2222345678888774            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+.....  ...+++++  +++|||+|+.  +|+++|+|||++ ||..++..+. +.++++.+ .|
T Consensus       111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~  185 (353)
T TIGR03265       111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG  185 (353)
T ss_pred             HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                56788889998754443  24566654  4999999999  999999999999 9999999988 88888765 48


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       186 ~tvi~v----THd~~ea~~l~d  203 (353)
T TIGR03265       186 VTTIMV----THDQEEALSMAD  203 (353)
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            888766    455554444433

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.8e-23  Score=189.15  Aligned_cols=143  Identities=15%  Similarity=0.207  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~  111 (343)
T PRK11153         32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG  111 (343)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999976531          22333       23467777664       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l  186 (343)
T PRK11153        112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI  186 (343)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34677888887543322  23466654  4899999999  999999999999 9999999999 999998


Q ss_pred             HhC-CCeEEEEEecccccccChHHHHHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      .++ |.+++++    +|...+...+++.+
T Consensus       187 ~~~~g~tiilv----tH~~~~i~~~~d~v  211 (343)
T PRK11153        187 NRELGLTIVLI----THEMDVVKRICDRV  211 (343)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCCEE
Confidence            654 7887665    46555545554433

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.4e-23  Score=181.20  Aligned_cols=141  Identities=14%  Similarity=0.185  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CcccChhhhhh---------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS---------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-------~~~~~i~e~i~---------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...  ..+.|       .+..++++++.               
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  107 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE  107 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence            4789999999999999999999999999999999876521  11222       23356666553               


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus       108 ~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv  182 (255)
T PRK11248        108 IAHQMLKKVGLEGAEKRY--IWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV  182 (255)
T ss_pred             HHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             45677888886532222  34566654  4899999999  999999999999 9999999999 88888854 57787


Q ss_pred             EEEEecccccccChHHHHH
Q 025795          134 CAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (248)
                      +++    +|...+...+++
T Consensus       183 iiv----sH~~~~~~~~~d  197 (255)
T PRK11248        183 LLI----THDIEEAVFMAT  197 (255)
T ss_pred             EEE----eCCHHHHHHhCC
Confidence            665    455544444443

>PRK10908 cell division protein FtsE; Provisional

Probab=99.90  E-value=3.2e-23  Score=177.31  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..          +.+.|       .+..++++++.       
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  108 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG  108 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence            4689999999999999999999999999999999875421          12222       23456666653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~  183 (222)
T PRK10908        109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF  183 (222)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence                     34567788886532222  23455554  4899999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      ++++.+++++
T Consensus       184 ~~~~~tiii~  193 (222)
T PRK10908        184 NRVGVTVLMA  193 (222)
T ss_pred             HHCCCEEEEE
Confidence            7667777665

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.90  E-value=3.2e-23  Score=178.57  Aligned_cols=141  Identities=16%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCcccChhhhhh---------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y~~~~~i~e~i~---------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         +...+.+..++++++.               
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~   91 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER   91 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            4789999999999999999999999999999999876532         1111223456666543               


Q ss_pred             ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CC
Q 025795           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF  131 (248)
Q Consensus        59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~  131 (248)
                         +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ |.
T Consensus        92 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~  166 (230)
T TIGR01184        92 RAIVEEHIALVGLTEAADKR--PGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV  166 (230)
T ss_pred             HHHHHHHHHHcCCHHHHcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence               34557777876432222  34466654  4899999999  999999999999 9999999999 888888654 77


Q ss_pred             eEEEEEecccccccChHHHHH
Q 025795          132 NVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       132 ~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++++    +|...+...+++
T Consensus       167 tii~~----sH~~~~~~~~~d  183 (230)
T TIGR01184       167 TVLMV----THDVDEALLLSD  183 (230)
T ss_pred             EEEEE----eCCHHHHHHhcC
Confidence            77665    455544444444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.90  E-value=5.5e-23  Score=176.96  Aligned_cols=139  Identities=15%  Similarity=0.204  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          ..+.|       .+..++++++.       
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~  111 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG  111 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999876421          12222       23457776653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++
T Consensus       112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~  186 (233)
T cd03258         112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI  186 (233)
T ss_pred             CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence                     34567778886543222  23455554  4899999999  999999999999 9999999999 888888


Q ss_pred             HhC-CCeEEEEEecccccccChHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .++ |.+++++    +|...+...+
T Consensus       187 ~~~~~~tvii~----sH~~~~~~~~  207 (233)
T cd03258         187 NRELGLTIVLI----THEMEVVKRI  207 (233)
T ss_pred             HHHcCCEEEEE----eCCHHHHHHh
Confidence            764 7787665    4554433333

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.90  E-value=3.3e-23  Score=179.22  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.|       .+..++++++.            
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  108 (239)
T cd03296          29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP  108 (239)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence            4689999999999999999999999999999999876421     12222       22356665543            


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              ++++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  183 (239)
T cd03296         109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH  183 (239)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    24557777876432222  23455554  4899999999  999999999999 9999999999 8999987


Q ss_pred             hC-CCeEEEE
Q 025795          128 SR-NFNVCAV  136 (248)
Q Consensus       128 ~~-~~~ii~v  136 (248)
                      ++ |.+++++
T Consensus       184 ~~~~~tvii~  193 (239)
T cd03296         184 DELHVTTVFV  193 (239)
T ss_pred             HHcCCEEEEE
Confidence            64 7787665

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.90  E-value=4.3e-23  Score=176.08  Aligned_cols=139  Identities=16%  Similarity=0.209  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..+.|       .+..++++++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  108 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS  108 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence            4689999999999999999999999999999999876421      11222       23456766653           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ +
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~  182 (220)
T cd03263         109 EIKEEVELLLRVLGLTDKANKR--ARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G  182 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence                 34567778886532222  23455554  4899999999  999999999999 9999999999 88888865 5


Q ss_pred             CeEEEEEecccccccChHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .+++++    +|.......++
T Consensus       183 ~tii~~----sH~~~~~~~~~  199 (220)
T cd03263         183 RSIILT----THSMDEAEALC  199 (220)
T ss_pred             CEEEEE----cCCHHHHHHhc
Confidence            666555    45554444443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.90  E-value=3.1e-23  Score=179.44  Aligned_cols=140  Identities=18%  Similarity=0.245  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK  108 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence            4789999999999999999999999999999999866421          11222       23456666552       


Q ss_pred             -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                       +.++++.+++.......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  184 (243)
T TIGR02315       109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV  184 (243)
T ss_pred             cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence                             34567777776432222  23455554  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccChHHHH
Q 025795          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      . ++++++.+ .|.+++++    +|.......++
T Consensus       185 ~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~  213 (243)
T TIGR02315       185 M-DYLKRINKEDGITVIIN----LHQVDLAKKYA  213 (243)
T ss_pred             H-HHHHHHHHHcCCEEEEE----eCCHHHHHHhc
Confidence            8 88888865 47777665    45554434443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=7.2e-23  Score=173.16  Aligned_cols=129  Identities=13%  Similarity=0.084  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCC-------CCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENF-------DYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~-------~y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...      +.+       .+.+..++++++.           
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~  107 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD  107 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence            4689999999999999999999999999999999876421      111       2233457776653           


Q ss_pred             --HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        59 --~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                        ++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++++.+.++
T Consensus       108 ~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti  182 (204)
T PRK13538        108 EALWEALAQVGLAGFEDVP--VRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV  182 (204)
T ss_pred             HHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence              45677888886432222  24455554  3899999999  999999999999 9999999998 8899887667777


Q ss_pred             EEE
Q 025795          134 CAV  136 (248)
Q Consensus       134 i~v  136 (248)
                      +++
T Consensus       183 ii~  185 (204)
T PRK13538        183 ILT  185 (204)
T ss_pred             EEE
Confidence            665

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=9.3e-23  Score=175.76  Aligned_cols=129  Identities=15%  Similarity=0.164  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..+.|       .+..++++++.      
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  115 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG  115 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999976421           22333       23457777653      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  190 (233)
T PRK11629        116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE  190 (233)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      35677888886543222  24466554  4899999999  999999999999 9999999999 88998


Q ss_pred             HHh-CCCeEEEE
Q 025795          126 LKS-RNFNVCAV  136 (248)
Q Consensus       126 l~~-~~~~ii~v  136 (248)
                      +.+ .|.+++++
T Consensus       191 ~~~~~g~tvii~  202 (233)
T PRK11629        191 LNRLQGTAFLVV  202 (233)
T ss_pred             HHHhCCCEEEEE
Confidence            865 47787766

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.90  E-value=3.7e-23  Score=189.44  Aligned_cols=139  Identities=16%  Similarity=0.272  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC--ceEEEeccCCCC------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~--G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++  |+|.++|.+...            ++....+.+++++++.          
T Consensus        32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~  111 (362)
T TIGR03258        32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK  111 (362)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence            3689999999999999999999999999  999999876531            2222345678888774          


Q ss_pred             ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                            ++++++.+++.+.....  ...+++++  +++||++|+.  +|+++|+|||++ ||+..+..+. +.++++.++
T Consensus       112 ~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~  186 (362)
T TIGR03258       112 ADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEE  186 (362)
T ss_pred             HHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHh
Confidence                  56778888998764443  34566654  4999999999  999999999999 9999999988 888888764


Q ss_pred             --CCeEEEEEecccccccChHHH
Q 025795          130 --NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       130 --~~~ii~v~l~d~~~~~d~~~~  150 (248)
                        |.++++|    +|...+...+
T Consensus       187 ~~g~til~v----THd~~ea~~l  205 (362)
T TIGR03258       187 LPELTILCV----THDQDDALTL  205 (362)
T ss_pred             CCCCEEEEE----eCCHHHHHHh
Confidence              6787665    4554443333

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.89  E-value=6.1e-23  Score=188.59  Aligned_cols=129  Identities=17%  Similarity=0.149  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.       +.+.+++++++.            
T Consensus        30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  109 (369)
T PRK11000         30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE  109 (369)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence            4689999999999999999999999999999999876421     1222       244567887764            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          ++++++.+++.......  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ |
T Consensus       110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g  184 (369)
T PRK11000        110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  184 (369)
T ss_pred             HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence                45677888887543333  24566654  4899999999  999999999999 9999999988 888888654 7


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       185 ~tvI~v  190 (369)
T PRK11000        185 RTMIYV  190 (369)
T ss_pred             CEEEEE
Confidence            787666

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=5.1e-23  Score=187.86  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++....+.+++++++.            
T Consensus        33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~  112 (351)
T PRK11432         33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE  112 (351)
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence            4789999999999999999999999999999999976421            2222345678888875            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          ++++++.+++.+.....  ...+++++  +++|||+++.  +|+++|+|||++ ||+.++..+. +.++++.++ |
T Consensus       113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  187 (351)
T PRK11432        113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN  187 (351)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                35677888887654433  23466654  4999999999  999999999999 9999999988 888888654 7


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       188 ~tii~v----THd~~e~~~laD  205 (351)
T PRK11432        188 ITSLYV----THDQSEAFAVSD  205 (351)
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            888666    455554444433

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.89  E-value=4.2e-23  Score=175.19  Aligned_cols=127  Identities=21%  Similarity=0.304  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~------------   58 (248)
                      +++|+||||||||||+++|+|+++|++|+|.++|.++..      ..+.|       .+..++++++.            
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE  106 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence            689999999999999999999999999999999976431      11222       23457776653            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (248)
                          +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~  180 (211)
T cd03264         107 VKARVDEVLELVNLGDRAKKK--IGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR  180 (211)
T ss_pred             HHHHHHHHHHHCCCHHHHhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence                34567777876432222  34466554  4899999999  999999999999 9999999998 88998865 56


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      +++++
T Consensus       181 tii~v  185 (211)
T cd03264         181 IVILS  185 (211)
T ss_pred             EEEEE
Confidence            66555

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.89  E-value=4.3e-23  Score=175.58  Aligned_cols=129  Identities=19%  Similarity=0.207  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...           ..+.|       .+..++++++.      
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            3689999999999999999999999999999998865421           12222       23456766653      


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.+++.+. ++++++.
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  178 (214)
T cd03297         104 RNREDRISVDELLDLLGLDHLLNRY--PAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIK  178 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    34567788886432222  23455554  4899999999  999999999999 9999999999 8899887


Q ss_pred             hC-CCeEEEE
Q 025795          128 SR-NFNVCAV  136 (248)
Q Consensus       128 ~~-~~~ii~v  136 (248)
                      ++ |.+++++
T Consensus       179 ~~~~~tiii~  188 (214)
T cd03297         179 KNLNIPVIFV  188 (214)
T ss_pred             HHcCcEEEEE
Confidence            54 7777655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.89  E-value=2e-23  Score=177.41  Aligned_cols=141  Identities=18%  Similarity=0.335  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCC-------C--cccChhhhhh-------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------P--VAMDIRELIS-------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y-------~--~~~~i~e~i~-------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.  ...+.|       .  ...++++++.             
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  105 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL  105 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence            478999999999999999999999999999999986531  111111       0  1235555432             


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             ++++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~  180 (213)
T cd03235         106 SKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR  180 (213)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence                   44567777776432222  23455554  4899999999  999999999999 9999999999 88888876


Q ss_pred             CCCeEEEEEecccccccChHHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +|.+++++    +|...+...+++
T Consensus       181 ~~~tvi~~----sH~~~~~~~~~d  200 (213)
T cd03235         181 EGMTILVV----THDLGLVLEYFD  200 (213)
T ss_pred             cCCEEEEE----eCCHHHHHHhcC
Confidence            67777655    455544444433

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.89  E-value=4.6e-23  Score=178.05  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++++++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  107 (241)
T cd03256          28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR  107 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence            4789999999999999999999999999999999876421          12222       23456666553       


Q ss_pred             -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                       +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  183 (241)
T cd03256         108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV  183 (241)
T ss_pred             hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence                             33456677776432222  23455554  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHh-CCCeEEEEEecccccccChHHH
Q 025795          119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      . ++++++.+ .|.+++++    +|...+...+
T Consensus       184 ~-~~l~~~~~~~~~tii~~----tH~~~~~~~~  211 (241)
T cd03256         184 M-DLLKRINREEGITVIVS----LHQVDLAREY  211 (241)
T ss_pred             H-HHHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence            9 88888865 47777665    4555433333

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.89  E-value=5.8e-23  Score=188.04  Aligned_cols=141  Identities=17%  Similarity=0.182  Sum_probs=108.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..|+++++.      
T Consensus        20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~   99 (363)
T TIGR01186        20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL   99 (363)
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999999999999999999976532           22333       44678888774      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+||.......  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. +.+.+
T Consensus       100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~  174 (363)
T TIGR01186       100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK  174 (363)
T ss_pred             CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence                      45678888886543333  23566654  4899999999  999999999999 9999999999 88888


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHHH
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.+ .+.+++++    +|.+.+..++++
T Consensus       175 l~~~~~~Tii~v----THd~~ea~~~~d  198 (363)
T TIGR01186       175 LQATLQKTIVFI----THDLDEAIRIGD  198 (363)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            865 47888766    355544444444

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=1.5e-22  Score=170.68  Aligned_cols=129  Identities=10%  Similarity=0.075  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|+++|.+...      +.+.|       .+..++++++.           
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~  107 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG  107 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence            4689999999999999999999999999999999876531      12222       34567877764           


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      +.++++.++++......  ...++++.  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++.+.++++
T Consensus       108 ~~~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii  182 (200)
T PRK13540        108 ITELCRLFSLEHLIDYP--CGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL  182 (200)
T ss_pred             HHHHHHHcCCchhhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence            46678888886432222  23455543  4899999999  999999999999 9999999998 888888666777766


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      +
T Consensus       183 ~  183 (200)
T PRK13540        183 T  183 (200)
T ss_pred             E
Confidence            6

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=4.5e-23  Score=178.36  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-------CcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         +.+.|       .+..++++++.        
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~  107 (240)
T PRK09493         28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG  107 (240)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence            4789999999999999999999999999999999876431         12222       23456665543        


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~  182 (240)
T PRK09493        108 ASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDL  182 (240)
T ss_pred             CCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                     34677788886543222  23455554  3899999999  999999999999 9999999999 889988


Q ss_pred             HhCCCeEEEEEecccccccChHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+++.+++++    +|...+...+
T Consensus       183 ~~~~~tiii~----sH~~~~~~~~  202 (240)
T PRK09493        183 AEEGMTMVIV----THEIGFAEKV  202 (240)
T ss_pred             HHcCCEEEEE----eCCHHHHHHh
Confidence            7667777655    4555444433

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.89  E-value=4.8e-23  Score=175.87  Aligned_cols=140  Identities=16%  Similarity=0.171  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+.+++++++.         
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~  106 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA  106 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence            4789999999999999999999999999999999865421        22333       23457777664         


Q ss_pred             -----HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 -----~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                           +.++++.+ ++.......  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++.+.
T Consensus       107 ~~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~  181 (222)
T cd03224         107 KRKARLERVYELFPRLKERRKQL--AGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE  181 (222)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence                 23445555 343322111  23455554  3899999999  999999999999 9999999999 888888766


Q ss_pred             CCeEEEEEecccccccChHHHH
Q 025795          130 NFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      +.+++++    +|...+...++
T Consensus       182 ~~tiii~----sH~~~~~~~~~  199 (222)
T cd03224         182 GVTILLV----EQNARFALEIA  199 (222)
T ss_pred             CCEEEEE----eCCHHHHHHhc
Confidence            7777665    45544434443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=1.1e-22  Score=173.41  Aligned_cols=141  Identities=15%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-------CcccChhhhhh-------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~-------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...    ..+.|       .+..++++++.             
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~  117 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM  117 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence            3689999999999999999999999999999999875421    11222       23457777653             


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.++|.++++
T Consensus       118 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii  192 (214)
T PRK13543        118 PGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALV  192 (214)
T ss_pred             HHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            34567778886543222  24455554  3899999999  999999999999 9999999988 889888777777765


Q ss_pred             EEecccccccChHHHHH
Q 025795          136 VYLLDSQFITDVTKFIS  152 (248)
Q Consensus       136 v~l~d~~~~~d~~~~~s  152 (248)
                      +    +|...+...+++
T Consensus       193 ~----sH~~~~~~~~~~  205 (214)
T PRK13543        193 T----THGAYAAPPVRT  205 (214)
T ss_pred             E----ecChhhhhhhcc
Confidence            5    466655555544

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.89  E-value=6.8e-23  Score=177.54  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK  107 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence            4689999999999999999999999999999999876421       12222       23457776653          


Q ss_pred             ------HHHHHHHhCCCC--CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 ------~~~~m~~~~L~~--~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                            +.++++.+++.+  .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.
T Consensus       108 ~~~~~~~~~~l~~l~l~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~  182 (242)
T cd03295         108 EKIRERADELLALVGLDPAEFADRY--PHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ  182 (242)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence                  456678888875  22221  24466654  3899999999  999999999999 9999999988 8888886


Q ss_pred             hC-CCeEEEE
Q 025795          128 SR-NFNVCAV  136 (248)
Q Consensus       128 ~~-~~~ii~v  136 (248)
                      ++ |.+++++
T Consensus       183 ~~~g~tvii~  192 (242)
T cd03295         183 QELGKTIVFV  192 (242)
T ss_pred             HHcCCEEEEE
Confidence            54 7777665

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.89  E-value=1e-22  Score=173.83  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..           ..+.|       .+..++++++.      
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  111 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG  111 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999876421           12333       23456776653      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~  186 (221)
T TIGR02211       112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE  186 (221)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence                      34677788886543222  24466654  4899999999  999999999999 9999999999 88888


Q ss_pred             HHh-CCCeEEEE
Q 025795          126 LKS-RNFNVCAV  136 (248)
Q Consensus       126 l~~-~~~~ii~v  136 (248)
                      +.+ .+.+++++
T Consensus       187 ~~~~~~~tii~~  198 (221)
T TIGR02211       187 LNRELNTSFLVV  198 (221)
T ss_pred             HHHhcCCEEEEE
Confidence            865 47777665

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.89  E-value=5.9e-23  Score=180.04  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCCCcccChhhhhh----------HHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS----------LEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y~~~~~i~e~i~----------~~~~m   63 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..  .       +...+.+..++++++.          +.+++
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l  118 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL  118 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence            478999999999999999999999999999998775431  1       2222233467777763          45678


Q ss_pred             HHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 025795           64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL  139 (248)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~  139 (248)
                      +.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++   
T Consensus       119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv---  190 (257)
T PRK11247        119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV---  190 (257)
T ss_pred             HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE---
Confidence            888887543222  24566654  3899999999  999999999999 9999999999 88888754 47777665   


Q ss_pred             ccccccChHHHHH
Q 025795          140 DSQFITDVTKFIS  152 (248)
Q Consensus       140 d~~~~~d~~~~~s  152 (248)
                       +|...+...+++
T Consensus       191 -sHd~~~~~~~~d  202 (257)
T PRK11247        191 -THDVSEAVAMAD  202 (257)
T ss_pred             -eCCHHHHHHhCC
Confidence             455544444444

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.89  E-value=8.6e-23  Score=186.53  Aligned_cols=141  Identities=16%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+       .+.+.+++++++.            
T Consensus        29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~  108 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP  108 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence            3689999999999999999999999999999999976531     122       2234556666553            


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. +.++++.
T Consensus       109 ~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~  183 (353)
T PRK10851        109 NAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLH  183 (353)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence                    34567888887654333  24466654  4999999999  999999999999 9999999988 8888887


Q ss_pred             hC-CCeEEEEEecccccccChHHHHH
Q 025795          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++ |.++++|    +|...+...+++
T Consensus       184 ~~~g~tii~v----THd~~ea~~~~D  205 (353)
T PRK10851        184 EELKFTSVFV----THDQEEAMEVAD  205 (353)
T ss_pred             HhcCCEEEEE----eCCHHHHHHhCC
Confidence            64 7787666    455544444433

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.89  E-value=5.9e-23  Score=180.97  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++++++.      
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  130 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  130 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999865421           12323       23457777653      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~  205 (269)
T cd03294         131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR  205 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence                      34567788886542222  23455554  4899999999  999999999999 9999999999 88888


Q ss_pred             HHhC-CCeEEEEEecccccccChHHH
Q 025795          126 LKSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +.++ |.+++++    +|...+...+
T Consensus       206 ~~~~~g~tiii~----tH~~~~~~~~  227 (269)
T cd03294         206 LQAELQKTIVFI----THDLDEALRL  227 (269)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHh
Confidence            8654 7777655    4555444444

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.6e-23  Score=182.15  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-------~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +       +..++++++.         
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~  111 (274)
T PRK13647         32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD  111 (274)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence            4789999999999999999999999999999999976531       12333 1       1236666653         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++++
T Consensus       112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~  186 (274)
T PRK13647        112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN  186 (274)
T ss_pred             HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence                   35667788886543332  24566654  4899999999  999999999999 9999999999 99999876


Q ss_pred             CCCeEEEEEecccccccChHHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +|.+++++    +|.......+++
T Consensus       187 ~g~tili~----tH~~~~~~~~~d  206 (274)
T PRK13647        187 QGKTVIVA----THDVDLAAEWAD  206 (274)
T ss_pred             CCCEEEEE----eCCHHHHHHhCC
Confidence            68887665    465554444444

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.7e-23  Score=182.50  Aligned_cols=140  Identities=16%  Similarity=0.150  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+..++++++.         
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  111 (255)
T PRK11300         32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT  111 (255)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence            4789999999999999999999999999999999876421        11222       22456666443         


Q ss_pred             ----------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795           59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (248)
Q Consensus        59 ----------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~  113 (248)
                                            +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~  187 (255)
T PRK11300        112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK  187 (255)
T ss_pred             hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence                                  23445667775432222  23455554  4899999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHH
Q 025795          114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       114 ~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      ++..+. +++.+++++ |.+++++    +|...+...++
T Consensus       188 ~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~  221 (255)
T PRK11300        188 ETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGIS  221 (255)
T ss_pred             HHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhC
Confidence            999998 888888764 7787665    45554444443

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.89  E-value=1.8e-22  Score=172.71  Aligned_cols=141  Identities=15%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CcccChhhhhh------------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~------------~~   60 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.++|.+...   ..+.|       .+..++++++.            +.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~  106 (223)
T TIGR03740        27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID  106 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence            4789999999999999999999999999999998865421   11222       23467777764            45


Q ss_pred             HHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795           61 DVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (248)
Q Consensus        61 ~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (248)
                      ++++.+|+.+.....  ...+++++  ++.+|++++.  +|+++|+|||++ ||+.++..+. ++++++.+.|.+++++ 
T Consensus       107 ~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~-  180 (223)
T TIGR03740       107 EVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS-  180 (223)
T ss_pred             HHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence            677888887543222  34455554  3899999999  999999999999 9999999998 8888887667777655 


Q ss_pred             ecccccccChHHHHH
Q 025795          138 LLDSQFITDVTKFIS  152 (248)
Q Consensus       138 l~d~~~~~d~~~~~s  152 (248)
                         +|...+...+++
T Consensus       181 ---sH~~~~~~~~~d  192 (223)
T TIGR03740       181 ---SHILSEVQQLAD  192 (223)
T ss_pred             ---cCCHHHHHHhcC
Confidence               455544444433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.89  E-value=2.2e-22  Score=169.41  Aligned_cols=129  Identities=19%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...      ..+.|       .+..++++++.           
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  106 (198)
T TIGR01189        27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR  106 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence            4689999999999999999999999999999999876421      11222       23467777653           


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (248)
                       +.++++.+++.+.....  ...+++++  +++||++++.  +|+++++||||+ ||+.++..+. ++++++.++|.+++
T Consensus       107 ~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii  181 (198)
T TIGR01189       107 TIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL  181 (198)
T ss_pred             HHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence             45567778886543222  24455554  3899999999  999999999999 9999999988 88888866677776


Q ss_pred             EE
Q 025795          135 AV  136 (248)
Q Consensus       135 ~v  136 (248)
                      ++
T Consensus       182 ~~  183 (198)
T TIGR01189       182 LT  183 (198)
T ss_pred             EE
Confidence            65

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.89  E-value=1.9e-22  Score=170.25  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+..           ...+.|       .+..++++++.      
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~  104 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK  104 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence            468999999999999999999999999999999987631           112332       23457776553      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+++.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  179 (206)
T TIGR03608       105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE  179 (206)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence                      35677888886543222  23455554  3899999999  999999999999 9999999999 88988


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+.|.+++++
T Consensus       180 ~~~~~~tii~~  190 (206)
T TIGR03608       180 LNDEGKTIIIV  190 (206)
T ss_pred             HHhcCCEEEEE
Confidence            87667777665

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.89  E-value=2.1e-22  Score=173.89  Aligned_cols=129  Identities=19%  Similarity=0.267  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..      ..+.|       .+..++++++.           
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~  107 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA  107 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence            4689999999999999999999999999999999875421      12222       23456666553           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-C
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R  129 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~  129 (248)
                           +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.+ .
T Consensus       108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~  182 (236)
T TIGR03864       108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ  182 (236)
T ss_pred             HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence                 35667788886543222  23455554  4899999999  999999999999 9999999999 88888864 5


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |.+++++
T Consensus       183 ~~tiii~  189 (236)
T TIGR03864       183 GLSVLWA  189 (236)
T ss_pred             CCEEEEE
Confidence            7777655

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.89  E-value=1.1e-22  Score=187.09  Aligned_cols=129  Identities=14%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            +...+.|.+++++++.            
T Consensus        41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~  120 (375)
T PRK09452         41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE  120 (375)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence            3689999999999999999999999999999999976521            2223355678888774            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+.....  ...+++++  +++|||+|+.  +|+++|+|||++ ||..++..+. +.++++.+ .|
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g  195 (375)
T PRK09452        121 ITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLG  195 (375)
T ss_pred             HHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcC
Confidence                35667788887654433  24566654  4999999999  999999999999 9999999988 88888865 48


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .++++|
T Consensus       196 ~tiI~v  201 (375)
T PRK09452        196 ITFVFV  201 (375)
T ss_pred             CEEEEE
Confidence            887766

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.89  E-value=8.2e-23  Score=173.81  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.|       .+..++++++.            
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~  104 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE  104 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence            4789999999999999999999999999999999876421     11222       23456666553            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ +
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~  179 (213)
T TIGR01277       105 QQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQ  179 (213)
T ss_pred             HHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence                34567778886432222  23455554  4899999999  999999999999 9999999999 888888654 7


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       180 ~tii~v  185 (213)
T TIGR01277       180 RTLLMV  185 (213)
T ss_pred             CEEEEE
Confidence            777666

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.3e-23  Score=188.42  Aligned_cols=141  Identities=21%  Similarity=0.212  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------------------------CCCCCC-C--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-P--   48 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-------------------------------~~~~~y-~--   48 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+..                               ...++| +  
T Consensus        34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~  113 (305)
T PRK13651         34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF  113 (305)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence            368999999999999999999999999999999865431                               011233 1  


Q ss_pred             -----cccChhhhhh----------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEE
Q 025795           49 -----VAMDIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVF  104 (248)
Q Consensus        49 -----~~~~i~e~i~----------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lil  104 (248)
                           ...++++++.                +.++++.+||. +.....  ...+++++  +++||++++.  +|+++|+
T Consensus       114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqrvalA~aL~~--~P~lLlL  189 (305)
T PRK13651        114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS--PFELSGGQKRRVALAGILAM--EPDFLVF  189 (305)
T ss_pred             cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence                 1236666653                56778889996 332222  34466654  4899999999  9999999


Q ss_pred             eCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ||||+ ||+.++..+. ++++++.+.|.+++++    +|.......+++
T Consensus       190 DEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv----tHd~~~~~~~ad  233 (305)
T PRK13651        190 DEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV----THDLDNVLEWTK  233 (305)
T ss_pred             eCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eeCHHHHHHhCC
Confidence            99999 9999999999 9999987678888766    455544444444

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.89  E-value=1.3e-22  Score=176.42  Aligned_cols=139  Identities=17%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCC-------CcccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y-------~~~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...               ..+.|       .+..++++++.  
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (250)
T PRK11264         30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence            4689999999999999999999999999999998865321               12222       23456766652  


Q ss_pred             ---------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                     +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-  184 (250)
T PRK11264        110 PVIVKGEPKEEATARARELLAKVGLAGKETSY--PRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL-  184 (250)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC--hhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                           34567777886532222  24455554  3899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.++|.+++++    +|...+...+
T Consensus       185 ~~l~~~~~~~~tvi~~----tH~~~~~~~~  210 (250)
T PRK11264        185 NTIRQLAQEKRTMVIV----THEMSFARDV  210 (250)
T ss_pred             HHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence            8899887667777655    4554433333

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=6.1e-23  Score=182.51  Aligned_cols=143  Identities=14%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..+.| ++       ..++++++.     
T Consensus        34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~  113 (287)
T PRK13641         34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN  113 (287)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence            4689999999999999999999999999999999976421           12333 11       246666653     


Q ss_pred             -----------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 -----------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                 +.++++.+|+. ......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l  188 (287)
T PRK13641        114 FGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLF  188 (287)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence                       45667788886 332222  23455554  4899999999  999999999999 9999999988 889


Q ss_pred             HHHHhCCCeEEEEEecccccccChHHHHHHH
Q 025795          124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      +++.+.|.+++++    +|...+...+++.+
T Consensus       189 ~~l~~~g~tvliv----sH~~~~~~~~~d~v  215 (287)
T PRK13641        189 KDYQKAGHTVILV----THNMDDVAEYADDV  215 (287)
T ss_pred             HHHHhCCCEEEEE----eCCHHHHHHhCCEE
Confidence            9987668888665    56665555555533

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.89  E-value=1.3e-22  Score=175.52  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~  108 (242)
T TIGR03411        29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV  108 (242)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence            4689999999999999999999999999999999976431        12333       23456665542         


Q ss_pred             ---------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                     +.++++.+|+.+.....  ...++++.  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-  183 (242)
T TIGR03411       109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA-  183 (242)
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence                           34567778887543222  23455553  4899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++.+ +.+++++    +|...+...+++
T Consensus       184 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d  210 (242)
T TIGR03411       184 ELLKSLAG-KHSVVVV----EHDMEFVRSIAD  210 (242)
T ss_pred             HHHHHHhc-CCEEEEE----ECCHHHHHHhCC
Confidence            89998865 6676655    455544444433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7.3e-23  Score=182.04  Aligned_cols=141  Identities=21%  Similarity=0.220  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..++| +       ...++++++.       
T Consensus        34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~  113 (287)
T PRK13637         34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG  113 (287)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence            3689999999999999999999999999999999976531         12333 1       1346777663       


Q ss_pred             ---------HHHHHHHhCCC--CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 ---------~~~~m~~~~L~--~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                               +.++++.+|+.  +.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++
T Consensus       114 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~  188 (287)
T PRK13637        114 LSEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIK  188 (287)
T ss_pred             CCHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence                     45778888996  222222  23455554  4899999999  999999999999 9999999999 9999


Q ss_pred             HHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          125 HLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++.++ |.+++++    +|...+...+++
T Consensus       189 ~l~~~~g~tvi~v----tHd~~~~~~~~d  213 (287)
T PRK13637        189 ELHKEYNMTIILV----SHSMEDVAKLAD  213 (287)
T ss_pred             HHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            98764 8888766    455544444444

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=176.06  Aligned_cols=129  Identities=16%  Similarity=0.243  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|       .+..++++++.         
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~  109 (241)
T PRK10895         30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL  109 (241)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence            4789999999999999999999999999999999876421        12222       22345655542         


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              +.++++.+++.......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++++
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  184 (241)
T PRK10895        110 SAEQREDRANELMEEFHIEHLRDSM--GQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR  184 (241)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHhhcc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45566777776432222  23455554  3899999999  999999999999 9999999988 8888887


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      ++|.+++++
T Consensus       185 ~~g~tiii~  193 (241)
T PRK10895        185 DSGLGVLIT  193 (241)
T ss_pred             hcCCEEEEE
Confidence            668787665

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.3e-23  Score=187.05  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..+.| ++       ..++.+++.     
T Consensus        33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~  112 (288)
T PRK13643         33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN  112 (288)
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence            3689999999999999999999999999999999976521           11222 11       236666553     


Q ss_pred             -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                 +.++++.+++.+ .....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l  187 (288)
T PRK13643        113 FGIPKEKAEKIAAEKLEMVGLADEFWEKS--PFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLF  187 (288)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhccCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH
Confidence                       456677788853 22222  23455554  4899999999  999999999999 9999999999 889


Q ss_pred             HHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++|.+++++    +|...+...+++
T Consensus       188 ~~l~~~g~til~v----tHd~~~~~~~~d  212 (288)
T PRK13643        188 ESIHQSGQTVVLV----THLMDDVADYAD  212 (288)
T ss_pred             HHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            9987678888766    455544444444

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.6e-23  Score=182.57  Aligned_cols=145  Identities=15%  Similarity=0.186  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc---CCCC-----CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~---d~~~-----~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -.++++|||||||||++|+|+|+..|+.|+|.++|.   |..+     ..++|       .+.+||.++|.         
T Consensus        29 e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~  108 (345)
T COG1118          29 ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER  108 (345)
T ss_pred             cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccC
Confidence            358999999999999999999999999999999998   5433     33333       55788888885         


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.++|+..+.+..  ..+++++  +++|||+++.  +|++|+||||+. ||...+.++- .-++++
T Consensus       109 p~~~~~r~rv~elL~lvqL~~la~ryP--~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~  183 (345)
T COG1118         109 PSEAEIRARVEELLRLVQLEGLADRYP--AQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKL  183 (345)
T ss_pred             CChhhHHHHHHHHHHHhcccchhhcCc--hhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHH
Confidence                     788899999988765543  3466654  4999999999  999999999998 9999998877 777777


Q ss_pred             HhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      .++ |.++++|    +|...+..++++.++.
T Consensus       184 ~~~~~~ttvfV----THD~eea~~ladrvvv  210 (345)
T COG1118         184 HDRLGVTTVFV----THDQEEALELADRVVV  210 (345)
T ss_pred             HHhhCceEEEE----eCCHHHHHhhcceEEE
Confidence            654 8888777    5777777777665443

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.89  E-value=1.4e-22  Score=178.45  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          ..+.|       .+..++.+++.       
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  113 (269)
T PRK11831         34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT  113 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999999999999999999865421          12222       23457777653       


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  188 (269)
T PRK11831        114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE  188 (269)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence                      22356778886533222  34566654  3899999999  999999999999 9999999999 88898


Q ss_pred             HHhC-CCeEEEEEecccccccChHHHHH
Q 025795          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++ |.+++++    +|...+...+++
T Consensus       189 ~~~~~g~tiiiv----sH~~~~~~~~~d  212 (269)
T PRK11831        189 LNSALGVTCVVV----SHDVPEVLSIAD  212 (269)
T ss_pred             HHHhcCcEEEEE----ecCHHHHHHhhC
Confidence            8654 7777665    455443344433

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.5e-22  Score=187.37  Aligned_cols=141  Identities=19%  Similarity=0.225  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++++++.      
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~  134 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA  134 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999876421           12333       33567877764      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~  209 (400)
T PRK10070        135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK  209 (400)
T ss_pred             CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence                      34577888887643332  23466654  4899999999  999999999999 9999999999 88888


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHHH
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.+ .+.+++++    +|...+..++++
T Consensus       210 l~~~~g~TIIiv----THd~~~~~~~~D  233 (400)
T PRK10070        210 LQAKHQRTIVFI----SHDLDEAMRIGD  233 (400)
T ss_pred             HHHHCCCeEEEE----ECCHHHHHHhCC
Confidence            864 47787666    344443344433

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.89  E-value=1e-22  Score=177.39  Aligned_cols=141  Identities=15%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y~~~~~i~e~i~------------~~~~m~~~~L   68 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|...+  .+........++++++.            ..++++.+++
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l  105 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI  105 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999875322  12222233457777653            3457777887


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 025795           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI  144 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~  144 (248)
                      .......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++    +|..
T Consensus       106 ~~~~~~~--~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sHd~  176 (246)
T cd03237         106 EQILDRE--VPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV----EHDI  176 (246)
T ss_pred             HHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCH
Confidence            6432222  34466554  4899999999  999999999999 9999999998 88888865 47777666    4555


Q ss_pred             cChHHHHH
Q 025795          145 TDVTKFIS  152 (248)
Q Consensus       145 ~d~~~~~s  152 (248)
                      .....+++
T Consensus       177 ~~~~~~~d  184 (246)
T cd03237         177 IMIDYLAD  184 (246)
T ss_pred             HHHHHhCC
Confidence            44444433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.89  E-value=5.3e-22  Score=166.76  Aligned_cols=129  Identities=13%  Similarity=0.046  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCCCcccChhhhhh-----------HHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS-----------LED   61 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y~~~~~i~e~i~-----------~~~   61 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...          +...+.+..++++++.           +.+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  106 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA  106 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence            4789999999999999999999999999999999976421          1122234567877764           345


Q ss_pred             HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           62 VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        62 ~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++.+++.+.....  ...+++++  ++.+|++++.  +|+++|+|||++ +|+.++..+. ++++...+.+.+++++
T Consensus       107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~  179 (195)
T PRK13541        107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLS  179 (195)
T ss_pred             HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            56777876432222  23455544  3889999999  999999999999 9999998888 8887665567777665

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=185.56  Aligned_cols=129  Identities=15%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..           ...+.|       .+.+++++++.      
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  104 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS  104 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence            478999999999999999999999999999999886542           112222       34568888774      


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          ++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ |
T Consensus       105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g  179 (352)
T PRK11144        105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN  179 (352)
T ss_pred             hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                56788889997643332  23466554  4999999999  999999999999 9999999998 888888754 7


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       180 ~tii~v  185 (352)
T PRK11144        180 IPILYV  185 (352)
T ss_pred             CeEEEE
Confidence            777665

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.88  E-value=1.3e-22  Score=185.48  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+.+++++++.      
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  103 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA  103 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence            4789999999999999999999999999999999876421           11222       33567877764      


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              ++++++.+++.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.
T Consensus       104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~  178 (354)
T TIGR02142       104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH  178 (354)
T ss_pred             ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence                    45678888887643333  24466654  4899999999  999999999999 9999999999 8888887


Q ss_pred             hC-CCeEEEEEecccccccChHHHHH
Q 025795          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++ |.+++++    +|...+...+++
T Consensus       179 ~~~g~tiiiv----tH~~~~~~~~~d  200 (354)
T TIGR02142       179 AEFGIPILYV----SHSLQEVLRLAD  200 (354)
T ss_pred             HhcCCEEEEE----ecCHHHHHHhCC
Confidence            64 7777665    454444444443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.9e-22  Score=173.52  Aligned_cols=129  Identities=19%  Similarity=0.251  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------CCCCCC-------CcccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-------PVAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-------------~~~~~y-------~~~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.             ...+.|       .+..++++++.    
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~  108 (242)
T PRK11124         29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC  108 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence            468999999999999999999999999999999987641             112333       22457776653    


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                   +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~  183 (242)
T PRK11124        109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI  183 (242)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence                         34567778886543222  23455554  4899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      ++++++.|.+++++
T Consensus       184 l~~~~~~~~tii~~  197 (242)
T PRK11124        184 IRELAETGITQVIV  197 (242)
T ss_pred             HHHHHHcCCEEEEE
Confidence            99887667777655

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.88  E-value=1.8e-22  Score=172.84  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|         .+..++++++.     
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~  111 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI  111 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence            4789999999999999999999999999999999876421          12222         22456666652     


Q ss_pred             -------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 -------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                   +.++++.+++. +.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~  186 (228)
T cd03257         112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRY--PHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D  186 (228)
T ss_pred             ccCCcHHHHHHHHHHHHHHHCCCChhHhhCC--chhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence                         12455667774 221111  23455554  4899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhC-CCeEEEE
Q 025795          122 FVDHLKSR-NFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~-~~~ii~v  136 (248)
                      +++++.++ |.+++++
T Consensus       187 ~l~~~~~~~~~tii~~  202 (228)
T cd03257         187 LLKKLQEELGLTLLFI  202 (228)
T ss_pred             HHHHHHHHcCCEEEEE
Confidence            88888764 7777665

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.88  E-value=1.6e-22  Score=173.68  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  106 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR  106 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence            4789999999999999999999999999999999865421        12333       23457776664         


Q ss_pred             ----HHHHHHHhC-CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795           59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (248)
Q Consensus        59 ----~~~~m~~~~-L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (248)
                          ..++++.++ ++......  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ 
T Consensus       107 ~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~  181 (230)
T TIGR03410       107 SRKIPDEIYELFPVLKEMLGRR--GGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG  181 (230)
T ss_pred             hHHHHHHHHHHHHhHHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence                234455554 33221111  23455554  3899999999  999999999999 9999999999 888888764 


Q ss_pred             CCeEEEEEecccccccChHHH
Q 025795          130 NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +.+++++    +|...+...+
T Consensus       182 ~~tii~~----sH~~~~~~~~  198 (230)
T TIGR03410       182 GMAILLV----EQYLDFAREL  198 (230)
T ss_pred             CcEEEEE----eCCHHHHHHh
Confidence            7777665    4555433333

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.88  E-value=2.1e-22  Score=176.39  Aligned_cols=141  Identities=18%  Similarity=0.266  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  108 (258)
T PRK13548         29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR  108 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence            4789999999999999999999999999999999875421       11222       23456776653          


Q ss_pred             ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                            +.++++.+++.+.....  ...+++++  +++||++++      .  +|+++|+||||+ ||+.++..+. +++
T Consensus       109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  183 (258)
T PRK13548        109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA  183 (258)
T ss_pred             HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence                  34567777886532222  23455554  489999999      5  899999999999 9999999999 888


Q ss_pred             HHHH-hCCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLK-SRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++. +.|.+++++    +|...+...+++
T Consensus       184 ~~~~~~~~~tiii~----sH~~~~~~~~~d  209 (258)
T PRK13548        184 RQLAHERGLAVIVV----LHDLNLAARYAD  209 (258)
T ss_pred             HHHHHhcCCEEEEE----ECCHHHHHHhcC
Confidence            8887 567777665    455544444433

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.6e-22  Score=174.15  Aligned_cols=139  Identities=17%  Similarity=0.249  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...     ..+.|       .+..++++++.            
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  105 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA  105 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence            4789999999999999999999999999999999876421     11222       22346665543            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~  180 (232)
T PRK10771        106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ  180 (232)
T ss_pred             HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45567777776432222  23455554  3899999999  999999999999 9999999999 88888865 47


Q ss_pred             CeEEEEEecccccccChHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+++++    +|...+...+
T Consensus       181 ~tiii~----sH~~~~~~~~  196 (232)
T PRK10771        181 LTLLMV----SHSLEDAARI  196 (232)
T ss_pred             CEEEEE----ECCHHHHHHh
Confidence            777665    4555433333

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.9e-23  Score=182.96  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~~-------~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.| ++       ..++.+++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~  107 (271)
T PRK13638         28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG  107 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999976421         12333 11       123444332       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  182 (271)
T PRK13638        108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI  182 (271)
T ss_pred             CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34567777876533222  23455554  4899999999  999999999999 9999999999 889988


Q ss_pred             HhCCCeEEEEEecccccccChHHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++|.+++++    +|...+...+++
T Consensus       183 ~~~g~tii~v----tH~~~~~~~~~d  204 (271)
T PRK13638        183 VAQGNHVIIS----SHDIDLIYEISD  204 (271)
T ss_pred             HHCCCEEEEE----eCCHHHHHHhCC
Confidence            7667777665    455544444433

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=6e-22  Score=167.97  Aligned_cols=129  Identities=21%  Similarity=0.232  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-------CcccChhhhhh------------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~------------~   59 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...    ..+.|       .+..++++++.            +
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~  108 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI  108 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence            4789999999999999999999999999999999876321    11222       23457776653            4


Q ss_pred             HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus       109 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~  183 (207)
T PRK13539        109 AAALEAVGLAPLAHLP--FGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA  183 (207)
T ss_pred             HHHHHHcCCHHHHcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            6678888886532222  23455543  4899999999  999999999999 9999999998 8888886668887665

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.88  E-value=4.3e-22  Score=172.19  Aligned_cols=139  Identities=18%  Similarity=0.234  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC--------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y--------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..      ..+.|        .+..++++++.          
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  127 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP  127 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence            4789999999999999999999999999999998865321      11222        23456666553          


Q ss_pred             ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                            +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~  202 (236)
T cd03267         128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE  202 (236)
T ss_pred             HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence                  34566777776432222  23455554  3889999999  999999999999 9999999999 888888654


Q ss_pred             -CCeEEEEEecccccccChHHH
Q 025795          130 -NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       130 -~~~ii~v~l~d~~~~~d~~~~  150 (248)
                       +.+++++    +|...+...+
T Consensus       203 ~~~tiiiv----sH~~~~~~~~  220 (236)
T cd03267         203 RGTTVLLT----SHYMKDIEAL  220 (236)
T ss_pred             CCCEEEEE----ecCHHHHHHh
Confidence             6777665    4554433333

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.1e-22  Score=178.15  Aligned_cols=141  Identities=18%  Similarity=0.214  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|        ....++++++.         
T Consensus        31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~  110 (277)
T PRK13652         31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD  110 (277)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence            4789999999999999999999999999999999976532       11222        11346666653         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~  185 (277)
T PRK13652        111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE  185 (277)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   45667788887543333  23455554  4899999999  999999999999 9999999999 99999876


Q ss_pred             C-CCeEEEEEecccccccChHHHHH
Q 025795          129 R-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      + |.+++++    +|...+..++++
T Consensus       186 ~~g~tvli~----tH~~~~~~~~~d  206 (277)
T PRK13652        186 TYGMTVIFS----THQLDLVPEMAD  206 (277)
T ss_pred             hcCCEEEEE----ecCHHHHHHhCC
Confidence            4 7777655    455554444444

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.88  E-value=5.8e-22  Score=170.08  Aligned_cols=129  Identities=20%  Similarity=0.230  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+..++.+++.      
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~  116 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR  116 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999865421           12332       23456666653      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  191 (228)
T PRK10584        117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS  191 (228)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      35567788886432222  23455554  4899999999  999999999999 9999999998 88888


Q ss_pred             HHhC-CCeEEEE
Q 025795          126 LKSR-NFNVCAV  136 (248)
Q Consensus       126 l~~~-~~~ii~v  136 (248)
                      +.++ |.+++++
T Consensus       192 ~~~~~~~tii~~  203 (228)
T PRK10584        192 LNREHGTTLILV  203 (228)
T ss_pred             HHHhcCCEEEEE
Confidence            8654 7777665

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.9e-22  Score=183.60  Aligned_cols=141  Identities=13%  Similarity=0.122  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...            ++....+.+++.|++.            
T Consensus        46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~  125 (377)
T PRK11607         46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE  125 (377)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999976421            2223355678888875            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+++.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||...+..+. +.++++.+ .|
T Consensus       126 ~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  200 (377)
T PRK11607        126 IASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVG  200 (377)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                45678888987654443  23466654  4999999999  999999999999 9999999988 66777654 57


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       201 ~tii~v----THd~~ea~~laD  218 (377)
T PRK11607        201 VTCVMV----THDQEEAMTMAG  218 (377)
T ss_pred             CEEEEE----cCCHHHHHHhCC
Confidence            787666    455544444444

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.3e-23  Score=184.10  Aligned_cols=141  Identities=16%  Similarity=0.218  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..++| ++       ..++++++.     
T Consensus        34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~  113 (286)
T PRK13646         34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN  113 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence            4689999999999999999999999999999999976521           12333 11       126666553     


Q ss_pred             -----------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 -----------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                 +.++++.+|+. +.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l  188 (286)
T PRK13646        114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL  188 (286)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence                       45677788885 322221  23455554  4899999999  999999999999 9999999999 999


Q ss_pred             HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++.+ .|.+++++    +|...+...+++
T Consensus       189 ~~l~~~~g~tvl~v----tH~~~~~~~~~d  214 (286)
T PRK13646        189 KSLQTDENKTIILV----SHDMNEVARYAD  214 (286)
T ss_pred             HHHHHhCCCEEEEE----ecCHHHHHHhCC
Confidence            99865 48888766    455544444433

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.9e-22  Score=184.39  Aligned_cols=142  Identities=18%  Similarity=0.217  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc----CCCC-----------CCCC-------CCcccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFD-------YPVAMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~----d~~~-----------~~~~-------y~~~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.    ++..           ..+.       +.+..++++++.  
T Consensus        51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~  130 (382)
T TIGR03415        51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG  130 (382)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence            468999999999999999999999999999999985    3210           1222       244567877764  


Q ss_pred             --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                    +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. +
T Consensus       131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~  205 (382)
T TIGR03415       131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D  205 (382)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence                          45678888987654333  23466654  4899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhC-CCeEEEEEecccccccChHHHHHH
Q 025795          122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISG  153 (248)
Q Consensus       122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~  153 (248)
                      .+.+++++ +.+++++    +|...+..++++.
T Consensus       206 ~L~~l~~~~~~TII~i----THdl~e~~~l~Dr  234 (382)
T TIGR03415       206 ELLELQAKLNKTIIFV----SHDLDEALKIGNR  234 (382)
T ss_pred             HHHHHHHhcCCEEEEE----eCCHHHHHHhCCE
Confidence            88888764 7888766    4555444444443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.8e-22  Score=174.36  Aligned_cols=140  Identities=16%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  111 (237)
T PRK11614         32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD  111 (237)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence            4789999999999999999999999999999999976421        12222       22356766653         


Q ss_pred             -----HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 -----~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                           ++++++.+ ++.+....  ....+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus       112 ~~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~  186 (237)
T PRK11614        112 QFQERIKWVYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ  186 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence                 23334444 24322111  123455554  3899999999  999999999999 9999999998 888888766


Q ss_pred             CCeEEEEEecccccccChHHHH
Q 025795          130 NFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      |.+++++    +|...+..+++
T Consensus       187 ~~tiii~----sH~~~~~~~~~  204 (237)
T PRK11614        187 GMTIFLV----EQNANQALKLA  204 (237)
T ss_pred             CCEEEEE----eCcHHHHHhhC
Confidence            8787655    45554444443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.7e-22  Score=179.97  Aligned_cols=141  Identities=18%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..           ..+.| ++       ..++++++.     
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~  113 (290)
T PRK13634         34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN  113 (290)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence            4789999999999999999999999999999999976521           12333 11       246666653     


Q ss_pred             -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                 ++++++.++|.+ .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L  188 (290)
T PRK13634        114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF  188 (290)
T ss_pred             cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence                       456778888863 22222  23455554  4899999999  999999999999 9999999999 889


Q ss_pred             HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++.+ .|.+++++    +|...+...+++
T Consensus       189 ~~l~~~~g~tviii----tHd~~~~~~~~d  214 (290)
T PRK13634        189 YKLHKEKGLTTVLV----THSMEDAARYAD  214 (290)
T ss_pred             HHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            99865 48888766    466555455544

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.9e-22  Score=178.50  Aligned_cols=141  Identities=15%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C-------cccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P-------VAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~-------~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.| +       ...++++++.     
T Consensus        34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~  113 (280)
T PRK13649         34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN  113 (280)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence            4789999999999999999999999999999999865421           12333 1       1236666653     


Q ss_pred             -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                 ++++++.+++.+ .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  188 (280)
T PRK13649        114 FGVSQEEAEALAREKLALVGISESLFEKN--PFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLF  188 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence                       345567778863 21111  23455554  4899999999  999999999999 9999999998 888


Q ss_pred             HHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++++.+.+++++    +|...+...+++
T Consensus       189 ~~~~~~~~tiiiv----sH~~~~~~~~~d  213 (280)
T PRK13649        189 KKLHQSGMTIVLV----THLMDDVANYAD  213 (280)
T ss_pred             HHHHHCCCEEEEE----eccHHHHHHhCC
Confidence            8887667787665    455444444433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=190.75  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+.+++++++.         
T Consensus        31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  110 (501)
T PRK10762         31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF  110 (501)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence            4789999999999999999999999999999999866421        12333       23456655432         


Q ss_pred             -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                                 +.++++.+|+++.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~  185 (501)
T PRK10762        111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR  185 (501)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence                       45678888887654332  34566664  4899999999  999999999999 9999999999 8999


Q ss_pred             HHHhCCCeEEEE
Q 025795          125 HLKSRNFNVCAV  136 (248)
Q Consensus       125 ~l~~~~~~ii~v  136 (248)
                      ++++.|.+++++
T Consensus       186 ~l~~~~~tvii~  197 (501)
T PRK10762        186 ELKSQGRGIVYI  197 (501)
T ss_pred             HHHHCCCEEEEE
Confidence            987667777665

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.88  E-value=6.8e-22  Score=169.54  Aligned_cols=141  Identities=15%  Similarity=0.264  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-C--------cccChhhhh--------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-P--------VAMDIRELI--------------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-~--------~~~~i~e~i--------------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..  ..+.| +        ...++++++              
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~   86 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP   86 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence            4789999999999999999999999999999999976521  11222 1        123454432              


Q ss_pred             ------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        58 ------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                            .+.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus        87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~  161 (223)
T TIGR03771        87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG  161 (223)
T ss_pred             cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                  145677888887643332  23455554  4899999999  999999999999 9999999999 88888876


Q ss_pred             CCCeEEEEEecccccccChHHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +|.+++++    +|...+..++++
T Consensus       162 ~~~tvii~----sH~~~~~~~~~d  181 (223)
T TIGR03771       162 AGTAILMT----THDLAQAMATCD  181 (223)
T ss_pred             cCCEEEEE----eCCHHHHHHhCC
Confidence            68887666    455544444433

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.3e-22  Score=177.13  Aligned_cols=129  Identities=13%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|        .+..++++++.         
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~  113 (279)
T PRK13650         34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP  113 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence            4689999999999999999999999999999999977532       12233        12346666653         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.+++.++ ++++++.+
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~  188 (279)
T PRK13650        114 HEEMKERVNEALELVGMQDFKERE--PARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRD  188 (279)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence                   46678888887543322  23455543  4899999999  999999999999 9999999999 98999876


Q ss_pred             C-CCeEEEE
Q 025795          129 R-NFNVCAV  136 (248)
Q Consensus       129 ~-~~~ii~v  136 (248)
                      + |.+++++
T Consensus       189 ~~g~tiliv  197 (279)
T PRK13650        189 DYQMTVISI  197 (279)
T ss_pred             hcCCEEEEE
Confidence            4 8888766

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.88  E-value=3e-22  Score=184.99  Aligned_cols=145  Identities=13%  Similarity=0.191  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---------------CCCCCCCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---------------~~~~~y~~~~~i~e~i~---------   58 (248)
                      -+++++|.||+|||||+++|.|+++|++|+|.++|+...               .|++...+.+|+.|++-         
T Consensus        31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~  110 (501)
T COG3845          31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG  110 (501)
T ss_pred             cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence            479999999999999999999999999999999997542               26777788889988874         


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                                ++++++++|+.-+......--....++++.|-++|..  +|++|||||||+ |-|....+++ ++++.++
T Consensus       111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~  187 (501)
T COG3845         111 LIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRLA  187 (501)
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence                      7888999998754333322112334566999999999  999999999999 9999999999 9999999


Q ss_pred             hCCCeEEEEEecccccccChHHHHHHH
Q 025795          128 SRNFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      +.|++|++|    +|-+.+...+++.+
T Consensus       188 ~~G~tIi~I----THKL~Ev~~iaDrv  210 (501)
T COG3845         188 AEGKTIIFI----THKLKEVMAIADRV  210 (501)
T ss_pred             HCCCEEEEE----eccHHHHHHhhCee
Confidence            999999877    56666666655533

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4e-23  Score=186.45  Aligned_cols=141  Identities=17%  Similarity=0.167  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------------CCCCC-Cc-------cc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM   51 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------------~~~~y-~~-------~~   51 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                       ..+.| ++       ..
T Consensus        53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~  132 (320)
T PRK13631         53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD  132 (320)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence            4789999999999999999999999999999999865321                       11222 11       22


Q ss_pred             Chhhhhh----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795           52 DIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE  111 (248)
Q Consensus        52 ~i~e~i~----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD  111 (248)
                      ++++++.                +.++++.+|++. .....  ...+++++  +++||++++.  +|+++|+||||+ ||
T Consensus       133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD  208 (320)
T PRK13631        133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD  208 (320)
T ss_pred             hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence            6666552                456778888862 22221  23455554  4999999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++..+. ++++++.++|.+++++    +|.......+++
T Consensus       209 ~~~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~ad  244 (320)
T PRK13631        209 PKGEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVAD  244 (320)
T ss_pred             HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            99999999 8898887668887766    455544444443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.4e-22  Score=177.65  Aligned_cols=141  Identities=14%  Similarity=0.189  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.+...         ..+.| +       ...++++++.       
T Consensus        29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~  108 (275)
T PRK13639         29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG  108 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999976421         12233 1       1236666553       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l  183 (275)
T PRK13639        109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL  183 (275)
T ss_pred             CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence                     44677788886543333  23455554  3899999999  999999999999 9999999999 888988


Q ss_pred             HhCCCeEEEEEecccccccChHHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++|.+++++    +|...+...+++
T Consensus       184 ~~~~~til~v----tH~~~~~~~~~d  205 (275)
T PRK13639        184 NKEGITIIIS----THDVDLVPVYAD  205 (275)
T ss_pred             HHCCCEEEEE----ecCHHHHHHhCC
Confidence            7668887766    455544444444

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=3.1e-23  Score=172.40  Aligned_cols=141  Identities=16%  Similarity=0.258  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~------~~~i~e~i~---------   58 (248)
                      -++|++||||+||||.+.++.|+.+|++|+|.+++.|...        -.++| +|      .++|+|++.         
T Consensus        31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d  110 (243)
T COG1137          31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD  110 (243)
T ss_pred             cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence            4799999999999999999999999999999999998743        34566 33      567787774         


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +++.++++++.+.....  ...++++-  ++.|||+|+.  +|++++||||++ +||.+..++. ++++.|
T Consensus       111 ~~~~~~~~~l~~LL~ef~i~hlr~~~--a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L  185 (243)
T COG1137         111 LKKAERKEELDALLEEFHITHLRDSK--AYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHL  185 (243)
T ss_pred             hhHHHHHHHHHHHHHHhchHHHhcCc--ccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHH
Confidence                     55788888887654433  23455543  4999999999  999999999999 9999999988 999999


Q ss_pred             HhCCCeEEEEEecccccccChHHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +..|..++++    .|...+--.+|+
T Consensus       186 ~~rgiGvLIT----DHNVREtL~i~d  207 (243)
T COG1137         186 KDRGIGVLIT----DHNVRETLDICD  207 (243)
T ss_pred             HhCCceEEEc----cccHHHHHhhhh
Confidence            9889888544    566665555544

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.88  E-value=2.7e-22  Score=175.33  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE   55 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~y-------~~~~~i~e   55 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..                    .+.+.|       .+..++++
T Consensus        32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e  111 (257)
T PRK10619         32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  111 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence            478999999999999999999999999999999986542                    112333       22357777


Q ss_pred             hhh-----------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795           56 LIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (248)
Q Consensus        56 ~i~-----------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~  114 (248)
                      ++.                 +.++++.+|+.... ...  ...+++++  ++.||++++.  +|+++|+||||+ ||+.+
T Consensus       112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~  187 (257)
T PRK10619        112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL  187 (257)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence            753                 34667888886531 111  23455554  4899999999  999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEE
Q 025795          115 HVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       115 ~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +..+. ++++++++.|.+++++
T Consensus       188 ~~~l~-~~l~~l~~~g~tiiiv  208 (257)
T PRK10619        188 VGEVL-RIMQQLAEEGKTMVVV  208 (257)
T ss_pred             HHHHH-HHHHHHHhcCCEEEEE
Confidence            99999 8999987668888766

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.88  E-value=3.4e-22  Score=175.87  Aligned_cols=140  Identities=18%  Similarity=0.215  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---------CcccChhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---------PVAMDIRELI---------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---------~~~~~i~e~i---------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|         .+..++.+++         
T Consensus        40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~  119 (267)
T PRK15112         40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD  119 (267)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence            4789999999999999999999999999999999876431       11222         1122333332         


Q ss_pred             --------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        58 --------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                              .+.++++.+|+.+...... ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~  195 (267)
T PRK15112        120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL  195 (267)
T ss_pred             CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence                    1456788888853321111 23455554  3899999999  999999999999 9999999988 888888


Q ss_pred             HhC-CCeEEEEEecccccccChHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .++ |.+++++    +|...+...+
T Consensus       196 ~~~~g~tviiv----sH~~~~~~~~  216 (267)
T PRK15112        196 QEKQGISYIYV----TQHLGMMKHI  216 (267)
T ss_pred             HHHcCcEEEEE----eCCHHHHHHh
Confidence            754 7777655    4555444443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.88  E-value=4.1e-22  Score=180.62  Aligned_cols=142  Identities=18%  Similarity=0.262  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCC---------CCcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD---------YPVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~---------y~~~~~i~e~i~-----   58 (248)
                      -+++|+|+||||||||+++|+|+++|++|+|.++|.+...          ..+.         +.+.+++.+++.     
T Consensus        48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~  127 (331)
T PRK15079         48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT  127 (331)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999977531          1222         233456766642     


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                   +.++++.+++.+.....+. ..+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~l  203 (331)
T PRK15079        128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-HEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NL  203 (331)
T ss_pred             hccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                         4567888888543222222 3466654  4899999999  999999999999 9999999999 99


Q ss_pred             HHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++ .|.++++|    +|.+.....+++
T Consensus       204 L~~l~~~~~~til~i----THdl~~~~~~~d  230 (331)
T PRK15079        204 LQQLQREMGLSLIFI----AHDLAVVKHISD  230 (331)
T ss_pred             HHHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence            999876 48888766    465554444443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.88  E-value=3.6e-22  Score=171.87  Aligned_cols=139  Identities=14%  Similarity=0.194  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~y---------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|    ++|+|.++|.++..     ..+.|         .+.+++.+++.      
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~   92 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL   92 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence            47899999999999999999999999    89999999976421     12222         22345444321      


Q ss_pred             ----------HHHHHHHhCCCC---CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGP---NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 ----------~~~~m~~~~L~~---~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                +.++++.+++..   ....  ....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus        93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~  167 (230)
T TIGR02770        93 GKLSKQARALILEALEAVGLPDPEEVLKK--YPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KL  167 (230)
T ss_pred             CccHHHHHHHHHHHHHHcCCCchHHHHhC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HH
Confidence                      456677788862   1111  123455554  4899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccChHHH
Q 025795          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++.++ +.+++++    +|...+...+
T Consensus       168 l~~~~~~~~~tiii~----sH~~~~~~~~  192 (230)
T TIGR02770       168 LRELRQLFGTGILLI----THDLGVVARI  192 (230)
T ss_pred             HHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence            8888653 7777655    4555444443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.9e-22  Score=176.12  Aligned_cols=141  Identities=26%  Similarity=0.400  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL  117 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence            4789999999999999999999999999999999865421       11222       22345555442          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.+++.+. +++++
T Consensus       118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~  192 (265)
T PRK10575        118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR  192 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      34566777775432222  23455554  4899999999  999999999999 9999999999 88888


Q ss_pred             HHhC-CCeEEEEEecccccccChHHHHH
Q 025795          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.+. |.+++++    +|.......+++
T Consensus       193 l~~~~~~tiii~----sH~~~~i~~~~d  216 (265)
T PRK10575        193 LSQERGLTVIAV----LHDINMAARYCD  216 (265)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            8654 7777655    455544444433

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.88  E-value=5e-22  Score=171.81  Aligned_cols=130  Identities=15%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|++  +|++|+|.++|.+...        ..+.|       .+..++++++.       
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~  106 (243)
T TIGR01978        27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR  106 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence            478999999999999999999995  7999999999876421        11233       12334444331       


Q ss_pred             ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                      +.++++.+++.+ ...... ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l  183 (243)
T TIGR01978       107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-NEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV  183 (243)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhccccc-ccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence                            345666777763 222211 11255554  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025795          119 LRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (248)
                      . ++++++.++|.+++++
T Consensus       184 ~-~~l~~~~~~~~tvi~v  200 (243)
T TIGR01978       184 A-EGINRLREPDRSFLII  200 (243)
T ss_pred             H-HHHHHHHHCCcEEEEE
Confidence            9 9999987667777665

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.88  E-value=2.8e-22  Score=181.32  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=102.9

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh----------------
Q 025795            7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS----------------   58 (248)
Q Consensus         7 iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~----------------   58 (248)
                      |+||||||||||+++|+|+++|++|+|.++|.+...     ..+.       +.+.+++++++.                
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            689999999999999999999999999999876421     1222       234567777764                


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC  134 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii  134 (248)
                      ++++++.+++.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ |.+++
T Consensus        81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii  155 (325)
T TIGR01187        81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV  155 (325)
T ss_pred             HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence            35677888887654333  24566654  4999999999  999999999999 9999999988 888888654 78876


Q ss_pred             EEEecccccccChHHHHH
Q 025795          135 AVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       135 ~v~l~d~~~~~d~~~~~s  152 (248)
                      ++    +|...+...+++
T Consensus       156 iv----THd~~e~~~~~d  169 (325)
T TIGR01187       156 FV----THDQEEAMTMSD  169 (325)
T ss_pred             EE----eCCHHHHHHhCC
Confidence            65    455544444433

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.88  E-value=5.7e-22  Score=174.21  Aligned_cols=139  Identities=17%  Similarity=0.261  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          +.+.|         .+..++++++.     
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~  117 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH  117 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999875421          12222         23356665441     


Q ss_pred             ------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 ------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                  +.++++.+|+.+ .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~  192 (265)
T TIGR02769       118 LTSLDESEQKARIAELLDMVGLRSEDADKL--PRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-EL  192 (265)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        456777888853 21111  23455554  4899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccChHHH
Q 025795          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++.+. |.+++++    +|.......+
T Consensus       193 l~~~~~~~g~tiiiv----sH~~~~~~~~  217 (265)
T TIGR02769       193 LRKLQQAFGTAYLFI----THDLRLVQSF  217 (265)
T ss_pred             HHHHHHhcCcEEEEE----eCCHHHHHHH
Confidence            8888754 7787666    4555433333

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.88  E-value=8.2e-22  Score=163.97  Aligned_cols=125  Identities=15%  Similarity=0.241  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhhHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELISLEDVME   64 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~~~~~m~   64 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|          .+..+++|++.....  
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--  104 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL--  104 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence            4689999999999999999999999999999999876532        12223          223455554432110  


Q ss_pred             HhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025795           65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS  141 (248)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~  141 (248)
                                      ++++  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+++.+++++    +
T Consensus       105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----s  161 (182)
T cd03215         105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----S  161 (182)
T ss_pred             ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----e
Confidence                            3333  34899999999  999999999999 9999999999 8888886667777655    4


Q ss_pred             ccccChHHHHH
Q 025795          142 QFITDVTKFIS  152 (248)
Q Consensus       142 ~~~~d~~~~~s  152 (248)
                      |...+..++++
T Consensus       162 h~~~~~~~~~d  172 (182)
T cd03215         162 SELDELLGLCD  172 (182)
T ss_pred             CCHHHHHHhCC
Confidence            55544444443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.88  E-value=4.7e-22  Score=189.74  Aligned_cols=129  Identities=16%  Similarity=0.137  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..        ..+.|       .+.+++++++.         
T Consensus        38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  117 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS  117 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence            4689999999999999999999999999999999876421        12223       23467777653         


Q ss_pred             ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795           59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                         +.++++.+++.......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++|.+
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t  192 (510)
T PRK15439        118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG  192 (510)
T ss_pred             HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence               45678889987543333  34566654  4899999999  999999999999 9999999999 889998777888


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      ++++
T Consensus       193 iiiv  196 (510)
T PRK15439        193 IVFI  196 (510)
T ss_pred             EEEE
Confidence            7765

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.87  E-value=8.5e-22  Score=162.59  Aligned_cols=109  Identities=19%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-C------cccChhhhhhHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELISLEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-~------~~~~i~e~i~~~~~m~~~~L~   69 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.+...      ..+.| +      +..++++++.           
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----------   95 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-----------   95 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence            4689999999999999999999999999999999875431      12222 1      2234444332           


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                                 ++++  +++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++|.+++++
T Consensus        96 -----------LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~  151 (173)
T cd03230          96 -----------LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS  151 (173)
T ss_pred             -----------cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence                       3333  44899999999  999999999999 9999999999 8899987667777655

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.6e-22  Score=174.36  Aligned_cols=141  Identities=19%  Similarity=0.338  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~  108 (255)
T PRK11231         29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW  108 (255)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence            4689999999999999999999999999999999865321       11222       22345555543          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~  183 (255)
T PRK11231        109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE  183 (255)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                      34556667775432222  23455554  4899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEEEecccccccChHHHHH
Q 025795          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++|.+++++    +|...+..++++
T Consensus       184 l~~~~~tiii~----tH~~~~~~~~~d  206 (255)
T PRK11231        184 LNTQGKTVVTV----LHDLNQASRYCD  206 (255)
T ss_pred             HHHCCCEEEEE----ECCHHHHHHhcC
Confidence            87667777655    465554444444

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.7e-22  Score=173.03  Aligned_cols=139  Identities=18%  Similarity=0.269  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| ++     ..++++++.           
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  109 (241)
T PRK14250         30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV  109 (241)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence            4689999999999999999999999999999999876421       12222 11     135655543           


Q ss_pred             -HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025795           59 -LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN  132 (248)
Q Consensus        59 -~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~  132 (248)
                       +.++++.+++.+ .....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++++ .|.+
T Consensus       110 ~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t  184 (241)
T PRK14250        110 DVEYYLSIVGLNKEYATRD--VKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLT  184 (241)
T ss_pred             HHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence             456778888852 22221  23455554  4899999999  999999999999 9999999988 88888876 4788


Q ss_pred             EEEEEecccccccChHHH
Q 025795          133 VCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       133 ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++    +|...+...+
T Consensus       185 ii~~----sH~~~~~~~~  198 (241)
T PRK14250        185 VIWI----THNMEQAKRI  198 (241)
T ss_pred             EEEE----eccHHHHHHh
Confidence            7665    4554433333

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.7e-22  Score=176.48  Aligned_cols=141  Identities=13%  Similarity=0.157  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC--------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY--------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y--------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.|        ....++++++.       
T Consensus        33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~  112 (283)
T PRK13636         33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK  112 (283)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence            4789999999999999999999999999999999976521         12233        11346666653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               ++++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l  187 (283)
T PRK13636        113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM  187 (283)
T ss_pred             CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence                     45667888886543332  34456554  4899999999  999999999999 9999999999 888988


Q ss_pred             HhC-CCeEEEEEecccccccChHHHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++ |.+++++    +|...+...+++
T Consensus       188 ~~~~g~tillv----sH~~~~~~~~~d  210 (283)
T PRK13636        188 QKELGLTIIIA----THDIDIVPLYCD  210 (283)
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCC
Confidence            764 7888666    466654444444

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.87  E-value=3.5e-22  Score=171.30  Aligned_cols=140  Identities=18%  Similarity=0.226  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC-----CCCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l-----~~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|++     +|++|+|.+.|.+...         ..+.| ++     ..++++++.    
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  106 (227)
T cd03260          27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR  106 (227)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence            468999999999999999999999     9999999999876421         12223 11     346666553    


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                   +.++++.+|+.+..........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~  183 (227)
T cd03260         107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL  183 (227)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                         345667778765322211013455554  4899999999  999999999999 9999999999 98


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++.++ .+++++    +|.......+
T Consensus       184 l~~~~~~-~tii~~----sH~~~~~~~~  206 (227)
T cd03260         184 IAELKKE-YTIVIV----THNMQQAARV  206 (227)
T ss_pred             HHHHhhC-cEEEEE----eccHHHHHHh
Confidence            9988665 666554    4554433333

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.6e-22  Score=174.81  Aligned_cols=141  Identities=18%  Similarity=0.380  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|       .+..++++++.          
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~  113 (265)
T PRK10253         34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF  113 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence            4689999999999999999999999999999999876421       11222       22345554432          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~  188 (265)
T PRK10253        114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE  188 (265)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence                      34567777876432222  23455554  4899999999  999999999999 9999999999 88888


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHHH
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.+ .|.+++++    +|.......+++
T Consensus       189 l~~~~~~tiii~----tH~~~~~~~~~d  212 (265)
T PRK10253        189 LNREKGYTLAAV----LHDLNQACRYAS  212 (265)
T ss_pred             HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            875 47777665    455554444444

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=1.7e-22  Score=165.81  Aligned_cols=128  Identities=20%  Similarity=0.285  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCCCcccChhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL   56 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~y~~~~~i~e~   56 (248)
                      ++.|||.+|||||||++||.=+.+|+.|.|.++|....-                           +++.....+|+-++
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN  113 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN  113 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence            678999999999999999999999999999999854310                           23333334455444


Q ss_pred             hh-----------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        57 i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                      +-                 ++..+.++|+..... .|+. .++++  ++++|||+|+.  +|++++|||||+ |||...-
T Consensus       114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~-~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVg  189 (256)
T COG4598         114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPA-HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVG  189 (256)
T ss_pred             HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCcc-ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHH
Confidence            42                 567788889887655 3433 34444  45999999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEE
Q 025795          117 PVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       117 ~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++ ++++.|+++|.|.++|
T Consensus       190 EVL-kv~~~LAeEgrTMv~V  208 (256)
T COG4598         190 EVL-KVMQDLAEEGRTMVVV  208 (256)
T ss_pred             HHH-HHHHHHHHhCCeEEEE
Confidence            999 9999999999998776

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.87  E-value=5.8e-22  Score=173.20  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (256)
T TIGR03873        28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW  107 (256)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence            4789999999999999999999999999999999865421       11222       22345665542          


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+++.......  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  182 (256)
T TIGR03873       108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE  182 (256)
T ss_pred             cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence                      33456667775432222  23355543  3899999999  999999999999 9999999998 88999


Q ss_pred             HHhCCCeEEEEEecccccccChHHHHH
Q 025795          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++|.+++++    +|...+...+++
T Consensus       183 ~~~~~~tiii~----sH~~~~~~~~~d  205 (256)
T TIGR03873       183 LAATGVTVVAA----LHDLNLAASYCD  205 (256)
T ss_pred             HHhcCCEEEEE----eCCHHHHHHhCC
Confidence            87667777655    455544444433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=8.3e-22  Score=165.42  Aligned_cols=140  Identities=18%  Similarity=0.287  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC-----ceEEEeccCCCCC---------CC------CCCcccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NF------DYPVAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~-----G~i~i~~~d~~~~---------~~------~y~~~~~i~e~i~----   58 (248)
                      -++++|||+|||||||+|++..+.....     |+|.+.|.+.-..         .+      |-+..++|+|++.    
T Consensus        34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r  113 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR  113 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence            5789999999999999999999876654     9999999876321         11      1122478888886    


Q ss_pred             ------------HHHHHHHhCCCCCCc--hhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~--~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                  +++.++...|.+.-.  +..+...++++  +++.|||+++.  +|++|++||||+ |||.+...+- +
T Consensus       114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e  190 (253)
T COG1117         114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E  190 (253)
T ss_pred             hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence                        444444444432110  11112235554  35899999999  999999999999 9999999987 9


Q ss_pred             HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++.+|+ +..||++|    +|.+...+.+
T Consensus       191 Li~eLk-~~yTIviV----THnmqQAaRv  214 (253)
T COG1117         191 LITELK-KKYTIVIV----THNMQQAARV  214 (253)
T ss_pred             HHHHHH-hccEEEEE----eCCHHHHHHH
Confidence            999996 57888777    4666544443

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.3e-21  Score=170.57  Aligned_cols=129  Identities=18%  Similarity=0.201  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE   55 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~y-------~~~~~i~e   55 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..                    ...+.|       .+..++++
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  106 (252)
T TIGR03005        27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD  106 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence            468999999999999999999999999999999986542                    112222       23456665


Q ss_pred             hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        56 ~i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                      ++.                 +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++
T Consensus       107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~  182 (252)
T TIGR03005       107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM--PAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV  182 (252)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence            553                 35667778876432221  23455554  3899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhC-CCeEEEE
Q 025795          116 VPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus       116 ~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ..+. ++++++.++ |.+++++
T Consensus       183 ~~l~-~~l~~~~~~~~~tiiiv  203 (252)
T TIGR03005       183 GEVL-NVIRRLASEHDLTMLLV  203 (252)
T ss_pred             HHHH-HHHHHHHHhcCcEEEEE
Confidence            9999 888888654 7787666

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.87  E-value=9.7e-22  Score=169.40  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      .+++|+||||||||||+++|+|.++|.+|+|.++|.+...     ..+.|       .+..++++++.            
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~  106 (232)
T cd03300          27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE  106 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence            4789999999999999999999999999999999875421     22222       22346666553            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+|||+. ||+.++..+. ++++++.++ |
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~  181 (232)
T cd03300         107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG  181 (232)
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence                34567778887543332  23455554  3899999999  999999999999 9999999998 889888764 7


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       182 ~tiii~  187 (232)
T cd03300         182 ITFVFV  187 (232)
T ss_pred             CEEEEE
Confidence            787665

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.87  E-value=1.3e-21  Score=167.18  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.|       .+..++.+++.       
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~  111 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP  111 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence            4789999999999999999999999999999998875421          12222       12345554332       


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+++.....  ...++.++  +++||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~  186 (220)
T TIGR02982       112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK  186 (220)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence                      56778888886543332  23455543  4899999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEE
Q 025795          126 LKS-RNFNVCAV  136 (248)
Q Consensus       126 l~~-~~~~ii~v  136 (248)
                      +.+ .+.+++++
T Consensus       187 ~~~~~~~tii~~  198 (220)
T TIGR02982       187 LAREQGCTILIV  198 (220)
T ss_pred             HHHHcCCEEEEE
Confidence            865 47777665

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-22  Score=183.31  Aligned_cols=142  Identities=19%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~-----   58 (248)
                      -+++|+|+||||||||+++|+|+++|++|+|.+.|.+...          ..+.|         .+.+++.+++.     
T Consensus        42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~  121 (327)
T PRK11308         42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI  121 (327)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999976521          12222         23345554432     


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  +.++++.+|+.+.....+. ..+++++  +++||++++.  +|++||+||||+ ||..++..++ +++
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL  197 (327)
T PRK11308        122 NTSLSAAERREKALAMMAKVGLRPEHYDRYP-HMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM  197 (327)
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCChHHhcCCC-ccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence                        5678888998653222222 3466654  4899999999  999999999999 9999999999 899


Q ss_pred             HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++++ .|.++++|    +|.+.....+++
T Consensus       198 ~~l~~~~g~til~i----THdl~~~~~~ad  223 (327)
T PRK11308        198 MDLQQELGLSYVFI----SHDLSVVEHIAD  223 (327)
T ss_pred             HHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence            99876 48888766    455544444433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.87  E-value=7.8e-22  Score=188.12  Aligned_cols=129  Identities=16%  Similarity=0.154  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..        ..+.|       .+.+++++++.         
T Consensus        32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  111 (510)
T PRK09700         32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV  111 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence            4789999999999999999999999999999999866421        12333       12345554432         


Q ss_pred             --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                    +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~  186 (510)
T PRK09700        112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L  186 (510)
T ss_pred             ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence                          34567788887543333  34566654  4999999999  999999999999 9999999999 9


Q ss_pred             HHHHHHhCCCeEEEE
Q 025795          122 FVDHLKSRNFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (248)
                      +++++++.|.+++++
T Consensus       187 ~l~~l~~~g~tiiiv  201 (510)
T PRK09700        187 IMNQLRKEGTAIVYI  201 (510)
T ss_pred             HHHHHHhCCCEEEEE
Confidence            999987778887665

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.5e-22  Score=187.73  Aligned_cols=129  Identities=17%  Similarity=0.171  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|+++|  ++|+|.++|.+...        ..+.|       .+.+++++++.       
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  111 (506)
T PRK13549         32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP  111 (506)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence            47899999999999999999999986  79999999876421        22333       22345555431       


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  ++++++.+++.......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l  186 (506)
T PRK13549        112 GGIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII  186 (506)
T ss_pred             cCCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence                        45678888986543332  34566654  4899999999  999999999999 9999999999 999


Q ss_pred             HHHHhCCCeEEEE
Q 025795          124 DHLKSRNFNVCAV  136 (248)
Q Consensus       124 ~~l~~~~~~ii~v  136 (248)
                      +++.++|.+++++
T Consensus       187 ~~l~~~~~tvi~~  199 (506)
T PRK13549        187 RDLKAHGIACIYI  199 (506)
T ss_pred             HHHHHCCCEEEEE
Confidence            9987677777665

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.87  E-value=4.5e-22  Score=165.22  Aligned_cols=124  Identities=21%  Similarity=0.290  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhh-HHHHHHHhCCCCCCchhhhHHhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~-~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+.....    +. ..+..+. +.++++.+|+.+.....  ...+
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~-~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L   98 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS----PK-ELARKIAYVPQALELLGLAHLADRP--FNEL   98 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----HH-HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence            468999999999999999999999999999999987653211    00 1122222 33478888887543222  2345


Q ss_pred             hhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        82 ~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++++++ +.+++++
T Consensus        99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~  154 (180)
T cd03214          99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV  154 (180)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence            5543  4899999999  999999999999 9999999988 888888665 6777655

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.87  E-value=7.2e-22  Score=170.60  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~  105 (235)
T cd03299          26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE  105 (235)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence            4789999999999999999999999999999999876532     11222       23456665553            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          +.++++.+++++.....  ...+++++  +++||++++.  +|+++++|||++ ||+.++..+. ++++++.++ +
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~  180 (235)
T cd03299         106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG  180 (235)
T ss_pred             HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                34567788886543222  23455543  4899999999  999999999999 9999999998 888888654 7


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       181 ~tili~  186 (235)
T cd03299         181 VTVLHV  186 (235)
T ss_pred             CEEEEE
Confidence            777655

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=171.88  Aligned_cols=141  Identities=17%  Similarity=0.076  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CCCCCCCCcccChhhhhh----------------HHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE   65 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~~~~~~y~~~~~i~e~i~----------------~~~~m~~   65 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|... ..+...+.+..++++++.                +.++++.
T Consensus        51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~  130 (264)
T PRK13546         51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF  130 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999988421 112223344456666553                2345566


Q ss_pred             hCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795           66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (248)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (248)
                      +++++.....  ...+++++  +++||++++.  +|+++|+|||++ ||+.++..+. +++.++++.|.+++++    +|
T Consensus       131 ~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii----sH  201 (264)
T PRK13546        131 SELGEFIYQP--VKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV----SH  201 (264)
T ss_pred             cCCchhhcCC--cccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE----cC
Confidence            6776532222  23455554  3889999999  999999999999 9999999998 8888887678888766    45


Q ss_pred             cccChHHHHH
Q 025795          143 FITDVTKFIS  152 (248)
Q Consensus       143 ~~~d~~~~~s  152 (248)
                      .......+++
T Consensus       202 ~~~~i~~~~d  211 (264)
T PRK13546        202 NLGQVRQFCT  211 (264)
T ss_pred             CHHHHHHHcC
Confidence            5544444433

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5e-22  Score=176.68  Aligned_cols=141  Identities=17%  Similarity=0.136  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC------------CCCCCC-Cc-------ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PV-------AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~------------~~~~~y-~~-------~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+..            ...+.| ++       ..++++++.    
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  117 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV  117 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence            468999999999999999999999999999999886532            112333 11       225665543    


Q ss_pred             ------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 ------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                  +.++++.+++. +.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       118 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~  192 (289)
T PRK13645        118 NLGENKQEAYKKVPELLKLVQLPEDYVKRS--PFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NL  192 (289)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        34567777773 222221  24466654  4899999999  999999999999 9999999998 88


Q ss_pred             HHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++.+ .|.+++++    +|...+...+++
T Consensus       193 l~~~~~~~~~tiiii----sH~~~~~~~~~d  219 (289)
T PRK13645        193 FERLNKEYKKRIIMV----THNMDQVLRIAD  219 (289)
T ss_pred             HHHHHHhcCCEEEEE----ecCHHHHHHhCC
Confidence            888865 47777665    455544444444

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.1e-21  Score=169.61  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.++..     ..+.|       .+..++++++.            
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~  106 (237)
T TIGR00968        27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK  106 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence            4789999999999999999999999999999999876532     12222       22346665553            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          +.++++.+++.+.....  ...++.++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ +
T Consensus       107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~  181 (237)
T TIGR00968       107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH  181 (237)
T ss_pred             HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                35667777776432222  23355543  3899999999  999999999999 9999999999 888888765 7


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .+++++    +|...+..++++
T Consensus       182 ~tvli~----sH~~~~~~~~~d  199 (237)
T TIGR00968       182 VTTVFV----THDQEEAMEVAD  199 (237)
T ss_pred             CEEEEE----eCCHHHHHhhcC
Confidence            777655    455544344333

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=172.47  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC--------CcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY--------PVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y--------~~~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..        ..+.|        ....++++++.        
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~  108 (274)
T PRK13644         29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL  108 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence            4789999999999999999999999999999999876531        11222        11246666553        


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              +.++++.+|+++.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ +++++++
T Consensus       109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~  183 (274)
T PRK13644        109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH  183 (274)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45567778886543222  23455554  4899999999  999999999999 9999999999 8899887


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      +.|.+++++
T Consensus       184 ~~g~til~~  192 (274)
T PRK13644        184 EKGKTIVYI  192 (274)
T ss_pred             hCCCEEEEE
Confidence            668887665

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.87  E-value=1.4e-21  Score=167.30  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe--cc--CCC-----------CCCCCC-------CcccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-------PVAMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~--~~--d~~-----------~~~~~y-------~~~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.  |.  +..           ...+.|       .+..++++++.  
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  114 (224)
T TIGR02324        35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP  114 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence            4689999999999999999999999999999997  32  321           112333       22345555542  


Q ss_pred             --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                    +.++++.+++.+..... ....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~  190 (224)
T TIGR02324       115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E  190 (224)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence                          34567778876421111 123455543  4899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025795          122 FVDHLKSRNFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (248)
                      ++++++++|.+++++
T Consensus       191 ~l~~~~~~g~tii~v  205 (224)
T TIGR02324       191 LIAEAKARGAALIGI  205 (224)
T ss_pred             HHHHHHhcCCEEEEE
Confidence            889887668787666

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.87  E-value=1.9e-21  Score=166.87  Aligned_cols=129  Identities=22%  Similarity=0.342  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC----CCCCC-------CcccChhhhhhH---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL---------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~---------   59 (248)
                      -+++|+||||||||||+++|+|+++   |++|+|.+.|.++..    ..+.|       .+.+++++++..         
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~  113 (226)
T cd03234          34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK  113 (226)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence            4789999999999999999999999   899999999876531    11222       334577776641         


Q ss_pred             ----------HH-HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        60 ----------~~-~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++ .++.+++.+.....  ...+++++  ++++|++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~  188 (226)
T cd03234         114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ  188 (226)
T ss_pred             cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence                      12 34445554332111  12344443  4899999999  999999999999 9999999999 88888


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+.+.+++++
T Consensus       189 ~~~~~~tiii~  199 (226)
T cd03234         189 LARRNRIVILT  199 (226)
T ss_pred             HHHCCCEEEEE
Confidence            87667777655

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.6e-21  Score=172.73  Aligned_cols=129  Identities=17%  Similarity=0.187  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|        ....++.+++.         
T Consensus        34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~  113 (279)
T PRK13635         34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP  113 (279)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence            4689999999999999999999999999999999976532       12222        12346777663         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++.+
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~  188 (279)
T PRK13635        114 REEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKE  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   45677788887643333  23566654  3899999999  999999999999 9999999999 99999876


Q ss_pred             C-CCeEEEE
Q 025795          129 R-NFNVCAV  136 (248)
Q Consensus       129 ~-~~~ii~v  136 (248)
                      . |.+++++
T Consensus       189 ~~~~tiliv  197 (279)
T PRK13635        189 QKGITVLSI  197 (279)
T ss_pred             cCCCEEEEE
Confidence            5 7787666

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=1.3e-21  Score=166.03  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhhHHH------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLED------   61 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~~~~------   61 (248)
                      -+++++||||+||||++|+|+|+.++.+|+|.+.|.|...        ..+.|       ++.+||+|++.+--      
T Consensus        30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~  109 (237)
T COG0410          30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK  109 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence            5799999999999999999999999999999999998753        23333       45778888875210      


Q ss_pred             ------HHHHhCCCCCCchh--hhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795           62 ------VMEELGLGPNGGLI--YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-  129 (248)
Q Consensus        62 ------~m~~~~L~~~~~~~--~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-  129 (248)
                            +-+.+.+-|.....  ...-.++++.+  ++|||+|+.  +|++|+||||+. |-|....+++ +.+++++++ 
T Consensus       110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~  186 (237)
T COG0410         110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEG  186 (237)
T ss_pred             ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcC
Confidence                  11122333321111  00123444322  889999999  999999999999 9999999999 999999865 


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |.+|+.|
T Consensus       187 g~tIlLV  193 (237)
T COG0410         187 GMTILLV  193 (237)
T ss_pred             CcEEEEE
Confidence            7788766

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=2.7e-22  Score=176.70  Aligned_cols=158  Identities=20%  Similarity=0.228  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+.+|+|-+|||||||+|++.++++|+.|+|.+.|.|+..                  |+++..|..||-+++.      
T Consensus        55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~  134 (386)
T COG4175          55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ  134 (386)
T ss_pred             eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence            4788999999999999999999999999999999998753                  5666677778887765      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+||.......  .+.+++++  ++-|||||+.  +|+++++|||++ |||-.+.++..+ +.+
T Consensus       135 Gv~~~er~~~a~~~l~~VgL~~~~~~y--p~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQde-Ll~  209 (386)
T COG4175         135 GVPKAEREERALEALELVGLEGYADKY--PNELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQDE-LLE  209 (386)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhhcC--cccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHHHH-HHH
Confidence                      78899999998775443  35677765  4899999999  999999999999 999999998844 445


Q ss_pred             HH-hCCCeEEEEEecccccccChHHHHHHH-HHHHHHHHhhCCCee
Q 025795          126 LK-SRNFNVCAVYLLDSQFITDVTKFISGC-MASLSAMVQLELPHV  169 (248)
Q Consensus       126 l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~-l~~~~~~~~~~~p~~  169 (248)
                      |+ +.++|+++|    +|.+.+.-++-+.+ ++-.+..+..|+|..
T Consensus       210 Lq~~l~KTIvFi----tHDLdEAlriG~rIaimkdG~ivQ~Gtp~e  251 (386)
T COG4175         210 LQAKLKKTIVFI----THDLDEALRIGDRIAIMKDGEIVQVGTPEE  251 (386)
T ss_pred             HHHHhCCeEEEE----ecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence            54 458888877    34444444433322 233344555666654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-21  Score=172.31  Aligned_cols=129  Identities=14%  Similarity=0.195  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|        .+..++++++.         
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~  115 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP  115 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence            4789999999999999999999999999999999976531       12333        12357777654         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..++ ++++++.+
T Consensus       116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~  190 (271)
T PRK13632        116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK  190 (271)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34567778886532222  23455554  3899999999  999999999999 9999999999 88998876


Q ss_pred             C-CCeEEEE
Q 025795          129 R-NFNVCAV  136 (248)
Q Consensus       129 ~-~~~ii~v  136 (248)
                      + +.+++++
T Consensus       191 ~~~~tiii~  199 (271)
T PRK13632        191 TRKKTLISI  199 (271)
T ss_pred             hcCcEEEEE
Confidence            5 4677655

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=185.69  Aligned_cols=129  Identities=12%  Similarity=0.189  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|       .+..++++++.         
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  104 (491)
T PRK10982         25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM  104 (491)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence            4789999999999999999999999999999999875421        12222       22345555432         


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+++.......  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  179 (491)
T PRK10982        105 FVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK  179 (491)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      45667778886443222  34566654  4899999999  999999999999 9999999999 88999


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+.|.+++++
T Consensus       180 l~~~g~tvii~  190 (491)
T PRK10982        180 LKERGCGIVYI  190 (491)
T ss_pred             HHhCCCEEEEE
Confidence            87778787665

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.87  E-value=7.7e-22  Score=163.56  Aligned_cols=117  Identities=23%  Similarity=0.282  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CcccChhhhhhHHHHHHHhCCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG   72 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~   72 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         ..+.| +++.......++.+.+.   +.   
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~---~~---  100 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA---LG---  100 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhee---ec---
Confidence            4789999999999999999999999999999999875421         11222 11111111111222111   10   


Q ss_pred             chhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           73 GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        73 ~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                              ++++  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ +.+++++
T Consensus       101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~  157 (178)
T cd03229         101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV  157 (178)
T ss_pred             --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence                    3333  44899999999  999999999999 9999999999 889988765 6777655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.87  E-value=7.6e-22  Score=187.29  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc--------------ccChhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI---   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~--------------~~~i~e~i---   57 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.+.|.++..       +.++| ++              ..++++++   
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  109 (490)
T PRK10938         30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE  109 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence            4689999999999999999999999999999988765421       11222 11              24666654   


Q ss_pred             -----hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        58 -----~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                           .++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++++++
T Consensus       110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~  184 (490)
T PRK10938        110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS  184 (490)
T ss_pred             hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence                 256788899997643332  34566654  4899999999  999999999999 9999999999 999998767


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |.+++++
T Consensus       185 g~tvii~  191 (490)
T PRK10938        185 GITLVLV  191 (490)
T ss_pred             CCeEEEE
Confidence            7787665

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.7e-21  Score=182.47  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=114.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~---------   58 (248)
                      -+++++|.||+|||||+|+|+|.++|++|+|.++|.....               |++...|+++|.|++.         
T Consensus        35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~  114 (500)
T COG1129          35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF  114 (500)
T ss_pred             eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence            5799999999999999999999999999999999975421               5566678889888884         


Q ss_pred             -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                                 +.++|+++++......  ....++-.+  -+.||+++..  +++++||||||+ |.......++ ++++
T Consensus       115 g~id~~~m~~~A~~~l~~lg~~~~~~~--~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir  189 (500)
T COG1129         115 GLIDRKAMRRRARELLARLGLDIDPDT--LVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR  189 (500)
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCChhh--hhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence                       6778888887521111  122233322  2899999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEEEecccccccChHHHHHHH
Q 025795          125 HLKSRNFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      +|+++|.++++|    ||.+.+...+++.+
T Consensus       190 ~Lk~~Gv~ii~I----SHrl~Ei~~i~Dri  215 (500)
T COG1129         190 RLKAQGVAIIYI----SHRLDEVFEIADRI  215 (500)
T ss_pred             HHHhCCCEEEEE----cCcHHHHHHhcCEE
Confidence            999999999877    67777776666644

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.6e-21  Score=169.50  Aligned_cols=138  Identities=20%  Similarity=0.264  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.+...         +.+.| ++     ..++++++.    
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~  107 (247)
T TIGR00972        28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR  107 (247)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence            478999999999999999999999998     9999999876531         12333 11     145665543    


Q ss_pred             -------------HHHHHHHhCCCC----CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 -------------LEDVMEELGLGP----NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 -------------~~~~m~~~~L~~----~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                   +.++++.+|+.+    ....  ....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l  183 (247)
T TIGR00972       108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHD--SALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI  183 (247)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence                         345667778862    2111  123455554  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      . ++++++++ +.+++++    +|...+...+
T Consensus       184 ~-~~l~~~~~-~~tiiiv----sH~~~~~~~~  209 (247)
T TIGR00972       184 E-ELIQELKK-KYTIVIV----THNMQQAARI  209 (247)
T ss_pred             H-HHHHHHHh-cCeEEEE----ecCHHHHHHh
Confidence            8 88998865 4666554    4555443433

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.86  E-value=1.2e-21  Score=171.02  Aligned_cols=141  Identities=18%  Similarity=0.236  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCcc--cChhhhh---------hHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVA--MDIRELI---------SLEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~--~~~~~y~~~--~~i~e~i---------~~~~~m~~~~L   68 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. .+  .+...+.+.  .++++++         .+.++++.+++
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl  110 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA  110 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999987631 10  111111121  2454443         25677888888


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 025795           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI  144 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~  144 (248)
                      .+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ |.+++++    +|..
T Consensus       111 ~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv----sH~~  181 (251)
T PRK09544        111 GHLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV----SHDL  181 (251)
T ss_pred             hHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ecCH
Confidence            7543222  34466554  4899999999  999999999999 9999999998 888888654 7787665    4555


Q ss_pred             cChHHHHH
Q 025795          145 TDVTKFIS  152 (248)
Q Consensus       145 ~d~~~~~s  152 (248)
                      .+...+++
T Consensus       182 ~~i~~~~d  189 (251)
T PRK09544        182 HLVMAKTD  189 (251)
T ss_pred             HHHHHhCC
Confidence            44444444

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.7e-21  Score=185.47  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...        ..+.|       .+..++++++.         
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  110 (501)
T PRK11288         31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG  110 (501)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence            4789999999999999999999999999999999876421        12333       22345555442         


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~  185 (501)
T PRK11288        111 IVNRRLLNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE  185 (501)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCcCCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence                      45677888886543332  34566654  4899999999  999999999999 9999999998 88898


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+.|.+++++
T Consensus       186 ~~~~g~tiiii  196 (501)
T PRK11288        186 LRAEGRVILYV  196 (501)
T ss_pred             HHhCCCEEEEE
Confidence            87678787766

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.7e-21  Score=185.82  Aligned_cols=141  Identities=15%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..        ..+.|          .+.+++++++.      
T Consensus       290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  369 (510)
T PRK09700        290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK  369 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence            4689999999999999999999999999999999865421        12222          22345555432      


Q ss_pred             -------------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        59 -------------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                                         +.++++.+++. ......  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~  445 (510)
T PRK09700        370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK  445 (510)
T ss_pred             cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence                               34677888885 332222  24566654  4899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ..+. +++++++++|.+++++    +|.......+++
T Consensus       446 ~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d  477 (510)
T PRK09700        446 AEIY-KVMRQLADDGKVILMV----SSELPEIITVCD  477 (510)
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence            9999 9999987778887666    566554455544

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.2e-21  Score=169.79  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|        .+..++++++.         
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~  115 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP  115 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence            4789999999999999999999999999999999976531       12333        11223443331         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~  190 (269)
T PRK13648        116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS  190 (269)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   45678888887543322  23455544  4899999999  999999999999 9999999999 88888865


Q ss_pred             C-CCeEEEE
Q 025795          129 R-NFNVCAV  136 (248)
Q Consensus       129 ~-~~~ii~v  136 (248)
                      + |.+++++
T Consensus       191 ~~~~tiiiv  199 (269)
T PRK13648        191 EHNITIISI  199 (269)
T ss_pred             hcCCEEEEE
Confidence            4 7787665

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.86  E-value=2.5e-21  Score=162.73  Aligned_cols=116  Identities=19%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC----CCCCC-------CcccChhhhhhHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~~~~m~~~~L~   69 (248)
                      -+++|+||||||||||+++|+|++  +|.+|+|.++|.++..    ..+.|       .+..++++++.....+   .  
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---~--  110 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---R--  110 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---c--
Confidence            468999999999999999999999  9999999999987532    12222       2345666655432111   0  


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                                .++++  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+++.+++++
T Consensus       111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~  167 (194)
T cd03213         111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS  167 (194)
T ss_pred             ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence                      24444  34899999999  999999999999 9999999988 8888887667787665

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=168.81  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-------CCCCC-------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+...       ..+.|       .+..++++++.     
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~  109 (250)
T PRK14247         30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence            47899999999999999999999974     69999999876421       12222       23456666653     


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  ++++|++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-  186 (250)
T PRK14247        110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE-  186 (250)
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         2345666777431  01111123455554  4899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|.......+
T Consensus       187 ~~l~~~~~-~~tiii~----sH~~~~~~~~  211 (250)
T PRK14247        187 SLFLELKK-DMTIVLV----THFPQQAARI  211 (250)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHh
Confidence            88888854 6676555    4555433333

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=170.85  Aligned_cols=139  Identities=14%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC------------CCCCC-------CcccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-------PVAMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~------------~~~~y-------~~~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+++|+   +|+|.++|.++..            ..+.|       .+..++++++.  
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  110 (262)
T PRK09984         31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG  110 (262)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence            478999999999999999999999886   4999999965421            11222       23356665542  


Q ss_pred             ----------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795           59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (248)
Q Consensus        59 ----------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~  113 (248)
                                            +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~  186 (262)
T PRK09984        111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--VSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE  186 (262)
T ss_pred             hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--ccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence                                  45567778876432222  23455543  4899999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHH
Q 025795          114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       114 ~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++..+. ++++++.+ .|.+++++    +|.......+
T Consensus       187 ~~~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~  219 (262)
T PRK09984        187 SARIVM-DTLRDINQNDGITVVVT----LHQVDYALRY  219 (262)
T ss_pred             HHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence            999998 88998875 47787665    4555433333

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.86  E-value=4.2e-21  Score=158.44  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhhhHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELISLEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~-----~~i~e~i~~~~~m~~~~L~   69 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +++     .++++++            
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------------   96 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------   96 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------------
Confidence            3689999999999999999999999999999999876421       12222 111     1333322            


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                                 ++++  +++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.++|.+++++
T Consensus        97 -----------LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~  152 (173)
T cd03246          97 -----------LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVI  152 (173)
T ss_pred             -----------cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence                       3333  45899999999  999999999999 9999999999 8888887667777665

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=3.3e-21  Score=168.55  Aligned_cols=139  Identities=15%  Similarity=0.200  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-C--------cccChhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-P--------VAMDIRELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~y-~--------~~~~i~e~i   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+     +..           ..+.| +        +..++++++
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i  112 (258)
T PRK11701         33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI  112 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence            4789999999999999999999999999999999976     321           12333 1        123333332


Q ss_pred             -----------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        58 -----------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                                       .+.++++.+++++ .....  ...+++++  +++||++++.  +|+++|+||||+ ||+.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~  188 (258)
T PRK11701        113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL--PTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA  188 (258)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence                             1456778888863 21111  23455554  4899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEEEecccccccChHHH
Q 025795          117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+. ++++++.++ |.+++++    +|.......+
T Consensus       189 ~l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~  218 (258)
T PRK11701        189 RLL-DLLRGLVRELGLAVVIV----THDLAVARLL  218 (258)
T ss_pred             HHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHh
Confidence            998 888888654 7777665    4555443333

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.86  E-value=4.8e-21  Score=164.44  Aligned_cols=129  Identities=18%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.+.|.++..       ..+.| +     ...++++++.           
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~  113 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD  113 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence            4689999999999999999999999999999999865421       12222 1     1236766653           


Q ss_pred             ---HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ---~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                         ++++++.+++.. .....  ...++++.  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~  188 (225)
T PRK10247        114 PAIFLDDLERFALPDTILTKN--IAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQN  188 (225)
T ss_pred             HHHHHHHHHHcCCChHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence               356777888852 11111  23455543  4899999999  999999999999 9999999888 88888865 47


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       189 ~tvii~  194 (225)
T PRK10247        189 IAVLWV  194 (225)
T ss_pred             CEEEEE
Confidence            777666

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=9.8e-22  Score=170.17  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCC------CCC--------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~------~~y--------~~~~~i~e~i~----------   58 (248)
                      -+++++||||+||||++|+|+|++.|++|.|.++|.+|..+.      +.+        .-++.+.+.+.          
T Consensus        51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd  130 (325)
T COG4586          51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD  130 (325)
T ss_pred             cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence            478999999999999999999999999999999999995421      111        00222333222          


Q ss_pred             ------HHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-
Q 025795           59 ------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-  128 (248)
Q Consensus        59 ------~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-  128 (248)
                            .+...+.+++++.....  +..++-  +++..||.+|.+  +|++++|||||- ||..++..+. +++++..+ 
T Consensus       131 ~~F~~r~~~l~eiLdl~~~lk~~--vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~  205 (325)
T COG4586         131 DEFAERLDFLTEILDLEGFLKWP--VRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE  205 (325)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhh--hhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence                  34455556776543322  344444  455899999999  999999999998 9999999988 99999875 


Q ss_pred             CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhC
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE  165 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~  165 (248)
                      .+.||+    ..+|.+.|...+|..+++...+.+..+
T Consensus       206 ~~aTVl----lTTH~~~di~~lc~rv~~I~~Gqlv~d  238 (325)
T COG4586         206 RQATVL----LTTHIFDDIATLCDRVLLIDQGQLVFD  238 (325)
T ss_pred             hCceEE----EEecchhhHHHhhhheEEeeCCcEeec
Confidence            577775    458999999999998877666655554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.1e-21  Score=184.80  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI-------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i-------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.|          .+..++.+++       
T Consensus       280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~  359 (501)
T PRK11288        280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH  359 (501)
T ss_pred             cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence            4789999999999999999999999999999998865421        11222          2224454442       


Q ss_pred             ---------------hHHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        58 ---------------~~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     .+.++++.+++. ......  ...+++++  ++.||++++.  +|+++|+||||+ ||+.+++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l  435 (501)
T PRK11288        360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI  435 (501)
T ss_pred             hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence                           145677788884 332222  34566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      + ++++++++.|.+++++    +|.......+++
T Consensus       436 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d  464 (501)
T PRK11288        436 Y-NVIYELAAQGVAVLFV----SSDLPEVLGVAD  464 (501)
T ss_pred             H-HHHHHHHhCCCEEEEE----CCCHHHHHhhCC
Confidence            9 9999998778888766    566655555544

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.86  E-value=2.5e-21  Score=171.01  Aligned_cols=141  Identities=20%  Similarity=0.184  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC--------CceEEEeccCCCC-------CCCCC-------CcccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--------~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+++|.        +|+|.++|.+...       ..+.|       .+..++++++.  
T Consensus        28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~  107 (272)
T PRK13547         28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG  107 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence            468999999999999999999999998        8999999875421       11111       12345665542  


Q ss_pred             ------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc---------cCCCCCEEEEeCCCc
Q 025795           59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD---------NYLDDDYLVFDCPGQ  109 (248)
Q Consensus        59 ------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~---------~~~~p~~lilDEPt~  109 (248)
                                        +.++++.+++.+.....  ...+++++  ++.||++++         .  +|+++|+||||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~  183 (272)
T PRK13547        108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA  183 (272)
T ss_pred             ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence                              34566677776543222  23455554  489999999         5  899999999999


Q ss_pred             -cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                       ||+.++..+. ++++++.++ |.+++++    +|...+..++++
T Consensus       184 ~LD~~~~~~l~-~~l~~~~~~~~~tviii----sH~~~~~~~~~d  223 (272)
T PRK13547        184 ALDLAHQHRLL-DTVRRLARDWNLGVLAI----VHDPNLAARHAD  223 (272)
T ss_pred             cCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence             9999999999 889988764 7787665    455544444433

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.86  E-value=1.9e-21  Score=183.96  Aligned_cols=142  Identities=18%  Similarity=0.119  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCcccChhhhhh----------------HHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE   65 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~----------------~~~~m~~   65 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+.+++++++.                +.++++.
T Consensus        51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~  130 (549)
T PRK13545         51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF  130 (549)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999886521 11122344567777653                2356777


Q ss_pred             hCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795           66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (248)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (248)
                      +++++.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ ++++++++.|.+++++    +|
T Consensus       131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV----SH  201 (549)
T PRK13545        131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI----SH  201 (549)
T ss_pred             cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----EC
Confidence            8886543222  23466654  4899999999  999999999999 9999999999 8888887667787665    45


Q ss_pred             cccChHHHHHH
Q 025795          143 FITDVTKFISG  153 (248)
Q Consensus       143 ~~~d~~~~~s~  153 (248)
                      .......+|+.
T Consensus       202 dl~~i~~l~Dr  212 (549)
T PRK13545        202 SLSQVKSFCTK  212 (549)
T ss_pred             CHHHHHHhCCE
Confidence            55444444443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.86  E-value=3.4e-21  Score=183.85  Aligned_cols=141  Identities=13%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI-------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i-------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...        ..+.|          .+..++.+++       
T Consensus       290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~  369 (510)
T PRK15439        290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR  369 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence            4789999999999999999999999999999998865421        12333          1223444432       


Q ss_pred             ------------hHHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        58 ------------~~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                  .++++++.+++. ......  ...+++++  ++.||++++.  +|++||+||||+ ||+.++..+. +
T Consensus       370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~  444 (510)
T PRK15439        370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q  444 (510)
T ss_pred             hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence                        145678888886 333222  24566654  4899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++++|.+++++    +|.......+++
T Consensus       445 ~l~~l~~~g~tiIiv----sHd~~~i~~~~d  471 (510)
T PRK15439        445 LIRSIAAQNVAVLFI----SSDLEEIEQMAD  471 (510)
T ss_pred             HHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence            999987778887666    566655555544

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.7e-21  Score=170.64  Aligned_cols=129  Identities=18%  Similarity=0.223  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC---ceEEEeccCCCC-------CCCCC--------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~---G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++   |+|.++|.+...       ..+.|        .+..++++++.      
T Consensus        34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~  113 (282)
T PRK13640         34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR  113 (282)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence            4789999999999999999999999987   899999976532       12333        12346777663      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~  188 (282)
T PRK13640        114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK  188 (282)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence                      34567778887543332  23455554  4899999999  999999999999 9999999999 88888


Q ss_pred             HHhC-CCeEEEE
Q 025795          126 LKSR-NFNVCAV  136 (248)
Q Consensus       126 l~~~-~~~ii~v  136 (248)
                      +.++ |.+++++
T Consensus       189 l~~~~g~tvli~  200 (282)
T PRK13640        189 LKKKNNLTVISI  200 (282)
T ss_pred             HHHhcCCEEEEE
Confidence            8754 7787665

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.86  E-value=6.8e-21  Score=166.33  Aligned_cols=141  Identities=15%  Similarity=0.241  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELI-------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~y---------~~~~~i~e~i-------   57 (248)
                      -+++|+||||||||||+++|+|+++|    ++|+|.++|.++..     ..+.|         .+..++.+++       
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~  109 (254)
T PRK10418         30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL  109 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence            47899999999999999999999999    99999999876421     11222         2223433322       


Q ss_pred             -------hHHHHHHHhCCCCCCc-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        58 -------~~~~~m~~~~L~~~~~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                             .+.++++.+++.+... .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~  186 (254)
T PRK10418        110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI  186 (254)
T ss_pred             CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence                   1566788888875210 011123455554  4899999999  999999999999 9999999998 888888


Q ss_pred             Hh-CCCeEEEEEecccccccChHHH
Q 025795          127 KS-RNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+ .|.+++++    +|...+...+
T Consensus       187 ~~~~g~til~~----sH~~~~~~~~  207 (254)
T PRK10418        187 VQKRALGMLLV----THDMGVVARL  207 (254)
T ss_pred             HHhcCcEEEEE----ecCHHHHHHh
Confidence            65 47787665    4555443333

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.1e-21  Score=169.44  Aligned_cols=141  Identities=15%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-Cc--------ccChhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELI------------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-~~--------~~~i~e~i------------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...    ..+.| ++        ..++++++            
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~  113 (272)
T PRK15056         34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR  113 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence            4689999999999999999999999999999998865321    11222 10        11222221            


Q ss_pred             --------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        58 --------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                              .+.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~  188 (272)
T PRK15056        114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL  188 (272)
T ss_pred             CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence                    245677888886543222  23455554  4899999999  999999999999 9999999998 889998


Q ss_pred             HhCCCeEEEEEecccccccChHHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +++|.+++++    +|...+...+++
T Consensus       189 ~~~g~tviiv----sH~~~~~~~~~d  210 (272)
T PRK15056        189 RDEGKTMLVS----THNLGSVTEFCD  210 (272)
T ss_pred             HhCCCEEEEE----eCCHHHHHHhCC
Confidence            7667777655    455544444444

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.86  E-value=3.1e-21  Score=183.67  Aligned_cols=141  Identities=16%  Similarity=0.254  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...        ..++|          .+.+++++++.      
T Consensus       279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~  358 (501)
T PRK10762        279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY  358 (501)
T ss_pred             cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence            4789999999999999999999999999999999865421        12333          12245554331      


Q ss_pred             ----------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ----------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                      ++++++.+++. +.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l  434 (501)
T PRK10762        359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI  434 (501)
T ss_pred             hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence                            45677888884 333322  34566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      . ++++++.++|.+++++    +|.......+++
T Consensus       435 ~-~~l~~~~~~g~tviiv----tHd~~~~~~~~d  463 (501)
T PRK10762        435 Y-QLINQFKAEGLSIILV----SSEMPEVLGMSD  463 (501)
T ss_pred             H-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence            9 9999987678887666    465554444443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.5e-21  Score=184.54  Aligned_cols=141  Identities=14%  Similarity=0.220  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+|+|+|+++ |++|+|.+.|.++..        ..+.|          .+.+++.+++.     
T Consensus       289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~  368 (506)
T PRK13549        289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD  368 (506)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence            4789999999999999999999998 599999999865421        11222          12345544331     


Q ss_pred             ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                      +.++++.+++.+ .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l  444 (506)
T PRK13549        369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELA--IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI  444 (506)
T ss_pred             hhccCcccChHHHHHHHHHHHHhcCccCCCcccc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence                            456778888853 32222  34566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      . +++++++++|.+++++    +|.......+++
T Consensus       445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d  473 (506)
T PRK13549        445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSD  473 (506)
T ss_pred             H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCC
Confidence            9 9999987778888665    566655555544

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.86  E-value=7e-22  Score=186.25  Aligned_cols=142  Identities=19%  Similarity=0.231  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CC----------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~----------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+++|+|++||||||+.|+|+|+.+|++|.|.++|.+.  ..                ......|..||++.+.      
T Consensus       318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~  397 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH  397 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence            47899999999999999999999999999999999762  10                1122256778887775      


Q ss_pred             -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                                 +.++++..||+++-...|+ ..+++++  +++||++|+.  +|+++++|||++ ||+-.+..+. +++.
T Consensus       398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~  473 (539)
T COG1123         398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK  473 (539)
T ss_pred             cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence                       6778999999986555555 4566654  4999999999  999999999999 9999999999 9999


Q ss_pred             HHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          125 HLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++ .|.+.++|    ||.+.-...+|+
T Consensus       474 ~lq~e~g~t~lfI----SHDl~vV~~i~d  498 (539)
T COG1123         474 DLQEELGLTYLFI----SHDLAVVRYIAD  498 (539)
T ss_pred             HHHHHhCCEEEEE----eCCHHHHHhhCc
Confidence            9986 48888777    455543333333

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=169.08  Aligned_cols=130  Identities=19%  Similarity=0.259  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  112 (253)
T PRK14242         33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR  112 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence            4789999999999999999999864     589999999876421         12333 11     136666654    


Q ss_pred             -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   ++++++.+++.+.- . .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  189 (253)
T PRK14242        113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE-  189 (253)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         23345566664310 0 001123355554  4899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       190 ~~l~~~~~-~~tvii~  204 (253)
T PRK14242        190 ELIHELKA-RYTIIIV  204 (253)
T ss_pred             HHHHHHhc-CCeEEEE
Confidence            88998854 6677655

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=6.9e-21  Score=165.95  Aligned_cols=129  Identities=17%  Similarity=0.207  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-C--------cccChhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-P--------VAMDIRELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~y-~--------~~~~i~e~i   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+     +..           ..+.| +        +..++.+++
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i  109 (253)
T TIGR02323        30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI  109 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence            4789999999999999999999999999999998865     210           12333 1        112333332


Q ss_pred             -----------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        58 -----------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                                       .+.++++.+++.+ ....  ....+++++  ++.||++++.  +|+++|+|||++ ||+.++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~  185 (253)
T TIGR02323       110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDD--LPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQA  185 (253)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhc--CchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence                             2456677888853 2111  124455554  4899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEE
Q 025795          117 PVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      .+. ++++++.+ .|.+++++
T Consensus       186 ~l~-~~l~~~~~~~~~tii~v  205 (253)
T TIGR02323       186 RLL-DLLRGLVRDLGLAVIIV  205 (253)
T ss_pred             HHH-HHHHHHHHhcCCEEEEE
Confidence            999 88888765 47888766

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=167.90  Aligned_cols=140  Identities=20%  Similarity=0.291  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-------CcccChhhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS---   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~---   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+...         ..+.|       .+..++++++.   
T Consensus        31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~  110 (258)
T PRK14241         31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL  110 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence            47899999999999999999999974     69999999876421         12222       22356666653   


Q ss_pred             --------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                    ++++++.+++.+.  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~  188 (258)
T PRK14241        111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE  188 (258)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence                          2345556666421  01111123455554  4899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                       ++++++++ +.+++++    +|...+..++
T Consensus       189 -~~l~~~~~-~~tviiv----sH~~~~~~~~  213 (258)
T PRK14241        189 -DLINELKQ-DYTIVIV----THNMQQAARV  213 (258)
T ss_pred             -HHHHHHhc-CCEEEEE----ecCHHHHHHh
Confidence             88888854 5666555    4555443433

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=4e-21  Score=167.39  Aligned_cols=142  Identities=20%  Similarity=0.277  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|++++ +|+|.++|.+...       ..+.|       .+..++++++.          
T Consensus        23 ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~  101 (248)
T PRK03695         23 EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE  101 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence            47899999999999999999999864 8999999976421       11222       22345665543          


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHcc-----CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~-----~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                           +.++++.+++.+.....  ...+++++  +++||++++.     -.+|+++|+|||++ ||+.++..+. +++++
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~  178 (248)
T PRK03695        102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE  178 (248)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence                 45677888886533222  23455554  4899999984     01469999999999 9999999988 99998


Q ss_pred             HHhCCCeEEEEEecccccccChHHHHH
Q 025795          126 LKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++|.+++++    +|...+...+++
T Consensus       179 ~~~~~~tvi~~----sH~~~~~~~~~d  201 (248)
T PRK03695        179 LCQQGIAVVMS----SHDLNHTLRHAD  201 (248)
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCC
Confidence            87667787665    455544444433

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.9e-22  Score=173.96  Aligned_cols=169  Identities=14%  Similarity=0.181  Sum_probs=136.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----------CCCCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-----------~~~~~~y-------~~~~~i~e~i~------   58 (248)
                      =++++.|++||||||++++|+|+.+|+.|.|.++|.-.           ....++|       +|.++|+.++.      
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~  104 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS  104 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence            36899999999999999999999999999999998532           2244555       45667777765      


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN  132 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~  132 (248)
                          .+++.+.+|+++...+...--.-.++++++|+|||..  .|+++++|||.+ ||...+++++ -.+++|.++ +..
T Consensus       105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~IP  181 (352)
T COG4148         105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEINIP  181 (352)
T ss_pred             chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCCC
Confidence                6788889999988655533222223467999999999  999999999998 9999999999 889999764 777


Q ss_pred             EEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccc
Q 025795          133 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV  178 (248)
Q Consensus       133 ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll  178 (248)
                      |+.|    ||.+.+.....+.+++.-.+.++...|...|++..|..
T Consensus       182 IlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~  223 (352)
T COG4148         182 ILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP  223 (352)
T ss_pred             EEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence            7666    68888888888888887788888778888888777764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.85  E-value=4.3e-21  Score=169.06  Aligned_cols=141  Identities=16%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCC---------CCcccChhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD---------YPVAMDIRELI------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~---------y~~~~~i~e~i------   57 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..          ..+.         +.+..++++++      
T Consensus        39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~  118 (268)
T PRK10419         39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH  118 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence            4789999999999999999999999999999999876421          1122         22334555443      


Q ss_pred             -----------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        58 -----------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                 .++++++.+|+.+ .....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++
T Consensus       119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~  193 (268)
T PRK10419        119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL  193 (268)
T ss_pred             hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence                       1456778888863 22221  23355543  4899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++.++ +.+++++    +|...+...+++
T Consensus       194 l~~~~~~~~~tiiiv----sH~~~~i~~~~d  220 (268)
T PRK10419        194 LKKLQQQFGTACLFI----THDLRLVERFCQ  220 (268)
T ss_pred             HHHHHHHcCcEEEEE----ECCHHHHHHhCC
Confidence            8888654 7777665    455544444433

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=5.8e-21  Score=172.82  Aligned_cols=142  Identities=13%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i~   58 (248)
                      -+++|+||||||||||+++|+|+++    +++|+|.++|.+...           ..+.|         .+.+++.+++.
T Consensus        34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~  113 (326)
T PRK11022         34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM  113 (326)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence            4789999999999999999999997    489999999987531           12222         23345544321


Q ss_pred             -----------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           59 -----------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                                       +.++++.+|+.+...  ..+ ...+++++  +++||++++.  +|+++|+||||+ ||+.++.
T Consensus       114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~  190 (326)
T PRK11022        114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQA  190 (326)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHH
Confidence                             567788899874211  112 23466654  4899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++ ++++++++ .|.++++|    +|.+.....+++
T Consensus       191 ~il-~lL~~l~~~~g~til~i----THdl~~~~~~ad  222 (326)
T PRK11022        191 QII-ELLLELQQKENMALVLI----THDLALVAEAAH  222 (326)
T ss_pred             HHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            999 99999875 48888766    455544444433

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.85  E-value=4.5e-21  Score=162.15  Aligned_cols=122  Identities=18%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC------CCCCC-------CcccChhhhhhHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL   66 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~~~~~m~~~   66 (248)
                      -+++|+||||||||||+++|+|+++   |++|+|.++|.+...      ..+.|       .+..++++++.....+.  
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--  111 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--  111 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence            4789999999999999999999999   899999999976532      12222       33467777765432111  


Q ss_pred             CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           67 GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        67 ~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                       ..    ..  ...++++.  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.++ +.+++++
T Consensus       112 -~~----~~--~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~  175 (202)
T cd03233         112 -GN----EF--VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS  175 (202)
T ss_pred             -cc----cc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence             11    11  23455543  4899999999  999999999999 9999999999 888988654 5555443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=7.4e-22  Score=174.91  Aligned_cols=129  Identities=16%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc-------ccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~-------~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...        ..+.| ++       ..++++++.        
T Consensus        37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~  116 (280)
T PRK13633         37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI  116 (280)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence            3689999999999999999999999999999999876531        12222 11       124554432        


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                              ++++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.
T Consensus       117 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~  191 (280)
T PRK13633        117 PPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELN  191 (280)
T ss_pred             CHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    45677788886543332  23455554  4899999999  999999999999 9999999999 8999986


Q ss_pred             h-CCCeEEEE
Q 025795          128 S-RNFNVCAV  136 (248)
Q Consensus       128 ~-~~~~ii~v  136 (248)
                      + .|.+++++
T Consensus       192 ~~~g~tillv  201 (280)
T PRK13633        192 KKYGITIILI  201 (280)
T ss_pred             HhcCCEEEEE
Confidence            5 48887665

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.85  E-value=1.8e-21  Score=166.04  Aligned_cols=130  Identities=21%  Similarity=0.193  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...       ..+.| +     ...++.+++.          +
T Consensus        31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  110 (220)
T cd03245          31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI  110 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999865421       11222 1     1236666652          3


Q ss_pred             HHHHHHhCCCCCCchhh---------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~---------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++.+++.+......         ....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.
T Consensus       111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~  187 (220)
T cd03245         111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL  187 (220)
T ss_pred             HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence            45566666643211100         012455544  4899999999  999999999999 9999999999 8888886


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.+++++
T Consensus       188 ~-~~tii~~  195 (220)
T cd03245         188 G-DKTLIII  195 (220)
T ss_pred             C-CCEEEEE
Confidence            5 3666555

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.85  E-value=3.6e-21  Score=165.69  Aligned_cols=128  Identities=20%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +     ...+++|++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~  108 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV  108 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence            4689999999999999999999999999999999865421       11222 1     1246666653           


Q ss_pred             --------HHHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 --------~~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                              +.++++.+  ++.......  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       109 ~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~  183 (234)
T cd03251         109 EEAARAANAHEFIMELPEGYDTVIGER--GVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALER  183 (234)
T ss_pred             HHHHHHcCcHHHHHhcccCcceeeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence                    11222222  222211111  23455543  4899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+ +.+++++
T Consensus       184 ~~~-~~tii~~  193 (234)
T cd03251         184 LMK-NRTTFVI  193 (234)
T ss_pred             hcC-CCEEEEE
Confidence            854 7777655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.4e-21  Score=165.39  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-------CcccChhhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS---   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-------~~~~~i~e~i~---   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++.         ...+.|       .+..++.+++.   
T Consensus        31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  110 (253)
T PRK14267         31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV  110 (253)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence            47899999999999999999999987     4999999987653         112333       22356666553   


Q ss_pred             ---------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     +.++++.+++.+.-  ........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l  188 (253)
T PRK14267        111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI  188 (253)
T ss_pred             HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence                           23455566664310  0111134455554  3899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      . ++++++.+ +.+++++    +|...+...+
T Consensus       189 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~  214 (253)
T PRK14267        189 E-ELLFELKK-EYTIVLV----THSPAQAARV  214 (253)
T ss_pred             H-HHHHHHhh-CCEEEEE----ECCHHHHHhh
Confidence            8 88888854 5666655    4554433333

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.85  E-value=5.2e-21  Score=156.64  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+....        +.++     ..-...++-+         .++
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--------~~~~-----~~~~~i~~~~---------qLS   84 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA--------SPRD-----ARRAGIAMVY---------QLS   84 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC--------CHHH-----HHhcCeEEEE---------ecC
Confidence            46899999999999999999999999999999998754321        0100     0000111100         033


Q ss_pred             hh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++  +++.+|++++.  +|+++|+|||++ ||+.+++.+. ++++++.+++.+++++
T Consensus        85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~  138 (163)
T cd03216          85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI  138 (163)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            33  34899999999  999999999999 9999999999 9999887667777665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=6.6e-21  Score=155.28  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh-------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~-------   58 (248)
                      .++|+||+|||||||+..++|+-.|++|+|.+.|.+...                  +.+..-|+++--|++.       
T Consensus        38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g  117 (228)
T COG4181          38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG  117 (228)
T ss_pred             eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence            579999999999999999999999999999999977632                  2222345666666653       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                               ..++++.+||+........--.-.++++++|||+++.  .|++++.||||- ||-.+-..+. +++-.+++
T Consensus       118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~lnr  194 (228)
T COG4181         118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFALNR  194 (228)
T ss_pred             CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHHhh
Confidence                     6788999999976543322111223466999999999  999999999997 9999999999 88888875


Q ss_pred             -CCCeEEEE
Q 025795          129 -RNFNVCAV  136 (248)
Q Consensus       129 -~~~~ii~v  136 (248)
                       .|.++++|
T Consensus       195 e~G~TlVlV  203 (228)
T COG4181         195 ERGTTLVLV  203 (228)
T ss_pred             hcCceEEEE
Confidence             58888777

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.85  E-value=1.2e-20  Score=158.25  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCC---CCCCCC-------CcccChhhhhhHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP   70 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~---~~~~~y-------~~~~~i~e~i~~~~~m~~~~L~~   70 (248)
                      -+++|+||||||||||+++|+|..  +|++|+|.++|.+..   ...+.|       .+..++++++.....++      
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------  107 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------  107 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence            478999999999999999999986  489999999987642   112222       33457777766432211      


Q ss_pred             CCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                               .++++  +++.||++++.  +|+++|+|||++ +|+.++..+. ++++++++.+.+++++
T Consensus       108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv  164 (192)
T cd03232         108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT  164 (192)
T ss_pred             ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence                     24443  34899999999  999999999999 9999999999 8888887667777665

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=9.7e-21  Score=167.53  Aligned_cols=129  Identities=13%  Similarity=0.148  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|        .+..++.+++.         
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~  113 (277)
T PRK13642         34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP  113 (277)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence            3689999999999999999999999999999999876531       12222        11235666553         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             ++++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus       114 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~  188 (277)
T PRK13642        114 REEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKE  188 (277)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence                   34566777776442222  23455543  4899999999  999999999999 9999999999 88888876


Q ss_pred             C-CCeEEEE
Q 025795          129 R-NFNVCAV  136 (248)
Q Consensus       129 ~-~~~ii~v  136 (248)
                      + |.+++++
T Consensus       189 ~~g~tiil~  197 (277)
T PRK13642        189 KYQLTVLSI  197 (277)
T ss_pred             hcCCEEEEE
Confidence            4 7887665

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.7e-21  Score=167.83  Aligned_cols=130  Identities=19%  Similarity=0.257  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+..         ...+.| ++     ..++++++.    
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  113 (254)
T PRK14273         34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK  113 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence            46899999999999999999999987     4899999987542         112333 11     256666553    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  +++||++++.  +|+++|+||||+ ||+.++..++ 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  190 (254)
T PRK14273        114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE-  190 (254)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-
Confidence                         2334455555311  00111123455544  4899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++++ +.+++++
T Consensus       191 ~~l~~~~~-~~tvii~  205 (254)
T PRK14273        191 ELIINLKE-SYTIIIV  205 (254)
T ss_pred             HHHHHHhc-CCEEEEE
Confidence            88999854 6676555

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.9e-21  Score=172.18  Aligned_cols=142  Identities=15%  Similarity=0.249  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhh-
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI-   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i-   57 (248)
                      -+++|+|+||||||||+++|+|+++    +++|+|.++|.+...           ..+.|         .+..++.+++ 
T Consensus        34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~  113 (330)
T PRK15093         34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM  113 (330)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence            4689999999999999999999986    588999999976521           12322         2223443332 


Q ss_pred             ---------------------hHHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795           58 ---------------------SLEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE  111 (248)
Q Consensus        58 ---------------------~~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD  111 (248)
                                           .+.++++.+||.+...  ..+ ...+++++  +++||++|+.  +|+++|+||||+ ||
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD  190 (330)
T PRK15093        114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTEGECQKVMIAIALAN--QPRLLIADEPTNAME  190 (330)
T ss_pred             HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence                                 2456788888875311  111 23455554  4899999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       112 ~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++..++ ++++++++ .|.++++|    +|.+.....+++
T Consensus       191 ~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~d  227 (330)
T PRK15093        191 PTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWAD  227 (330)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence            99999999 99999876 48888766    465554444443

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.3e-21  Score=187.16  Aligned_cols=142  Identities=16%  Similarity=0.213  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...          ..+.|         .+.+++.+++.     
T Consensus       351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~  430 (623)
T PRK10261        351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV  430 (623)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999875421          12222         23456665542     


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  +.++++.+|+.+.....+ ...+++++  +++||++++.  +|++||+||||+ ||+.++..++ +++
T Consensus       431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~ll  506 (623)
T PRK10261        431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NLL  506 (623)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence                        456788888863211112 24566654  4899999999  999999999999 9999999999 999


Q ss_pred             HHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          124 DHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++ |.++++|    +|.+.....+++
T Consensus       507 ~~l~~~~g~tvi~i----sHdl~~v~~~~d  532 (623)
T PRK10261        507 LDLQRDFGIAYLFI----SHDMAVVERISH  532 (623)
T ss_pred             HHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence            998764 7888766    465554444443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=164.78  Aligned_cols=140  Identities=19%  Similarity=0.308  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++.         ...+.| ++     ..++++++.    
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  118 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR  118 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence            46899999999999999999999875     7999999886542         112333 11     246666553    


Q ss_pred             ------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                  +.++++.+++.+.  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~  195 (258)
T PRK14268        119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D  195 (258)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence                        2446677776321  00111234455554  4899999999  999999999999 9999999998 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +++++.+ +.+++++    +|...+...+
T Consensus       196 ~l~~l~~-~~tiiiv----sH~~~~~~~~  219 (258)
T PRK14268        196 LIMNLKK-DYTIVIV----THNMQQAARI  219 (258)
T ss_pred             HHHHHhh-CCEEEEE----ECCHHHHHHh
Confidence            8888854 6777655    4555433333

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.85  E-value=7.9e-21  Score=166.40  Aligned_cols=141  Identities=17%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC-------C--CCCC-------Ccc---cC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-------PVA---MD   52 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~-------~--~~~y-------~~~---~~   52 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.           +.|.+...       .  .+.|       .+.   -+
T Consensus        27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  106 (255)
T cd03236          27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGK  106 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHH
Confidence            36899999999999999999999999999996           55655421       0  0111       110   01


Q ss_pred             hhhhh-------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        53 i~e~i-------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                      +.+++       .+.++++.+|+.+.....  ...+++++  ++.+|++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       107 i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~  181 (255)
T cd03236         107 VGELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RL  181 (255)
T ss_pred             HHHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence            11111       267888899987543222  23455543  4899999999  999999999999 9999999998 99


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++++.+++++    +|.......+++
T Consensus       182 l~~l~~~~~tIIii----SHd~~~~~~~ad  207 (255)
T cd03236         182 IRELAEDDNYVLVV----EHDLAVLDYLSD  207 (255)
T ss_pred             HHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence            99987667777665    354443333333

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.85  E-value=7.8e-21  Score=180.78  Aligned_cols=130  Identities=16%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|  ++|+|.++|.+...        ..+.|       .+.+++++++.       
T Consensus        28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  107 (500)
T TIGR02633        28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL  107 (500)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence            47899999999999999999999987  79999999865421        12333       22345544432       


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                   ++++++.+++.+..... ....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~  183 (500)
T TIGR02633       108 PGGRMAYNAMYLRAKNLLRELQLDADNVTR-PVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI  183 (500)
T ss_pred             cccccCHHHHHHHHHHHHHHcCCCCCcccC-chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence                         45677788886532111 134566654  4899999999  999999999999 9999999999 89


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      ++++++.|.+++++
T Consensus       184 l~~l~~~g~tviii  197 (500)
T TIGR02633       184 IRDLKAHGVACVYI  197 (500)
T ss_pred             HHHHHhCCCEEEEE
Confidence            99987778787665

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.85  E-value=9.5e-21  Score=164.87  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC------C--CCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~------~--~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+  ++|++|+|.+.|.+...      .  .+.|       .+..++.+++.       
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~  113 (252)
T CHL00131         34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR  113 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence            47899999999999999999998  57999999998865421      1  1111       11223333321       


Q ss_pred             ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                      +.++++.+++.+ ...... .+.+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l  190 (252)
T CHL00131        114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-NEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII  190 (252)
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCchhhhcccc-ccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence                            345677778763 211111 12255554  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025795          119 LRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (248)
                      . ++++++.+.|.+++++
T Consensus       191 ~-~~l~~~~~~g~tii~~  207 (252)
T CHL00131        191 A-EGINKLMTSENSIILI  207 (252)
T ss_pred             H-HHHHHHHhCCCEEEEE
Confidence            9 8898887667787665

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.85  E-value=1.2e-20  Score=162.91  Aligned_cols=130  Identities=17%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhhH----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELISL----------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~~----------   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +     ...++++++..          
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~  108 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV  108 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence            4689999999999999999999999999999999876421       11222 1     12466665531          


Q ss_pred             HHHHHHhCCCC---------CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGP---------NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~---------~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .+.++..++..         ..........+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.
T Consensus       109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  185 (237)
T cd03252         109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC  185 (237)
T ss_pred             HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence            11222222211         000001123455554  3899999999  999999999999 9999999999 8888885


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + |.+++++
T Consensus       186 ~-~~tiii~  193 (237)
T cd03252         186 A-GRTVIII  193 (237)
T ss_pred             C-CCEEEEE
Confidence            4 7777655

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.85  E-value=7.2e-21  Score=181.03  Aligned_cols=141  Identities=14%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC--------CCCCC----------CcccChhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i------   57 (248)
                      -+++|+||||||||||+++|+|+++| ++|+|.+.|.++..        ..+.|          .+.+++++++      
T Consensus       287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~  366 (500)
T TIGR02633       287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK  366 (500)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence            47899999999999999999999995 89999998865421        11222          2223343332      


Q ss_pred             ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     .++++++.+++.. .....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l  442 (500)
T TIGR02633       367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI  442 (500)
T ss_pred             hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence                           1456778888853 22222  24566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      + ++++++++.|.+++++    +|.......+++
T Consensus       443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d  471 (500)
T TIGR02633       443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSD  471 (500)
T ss_pred             H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence            9 8999997778887665    566655555544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.85  E-value=9.6e-21  Score=171.65  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC-----------CCCCC---------CcccChhhhhh-
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS-   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i~-   58 (248)
                      -+++|+|+||||||||+++|+|+++|.   +|+|.++|.+...           ..+.|         .+.+++.+++. 
T Consensus        43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~  122 (330)
T PRK09473         43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME  122 (330)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence            478999999999999999999999986   9999999987521           12322         23355555431 


Q ss_pred             ----------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795           59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (248)
Q Consensus        59 ----------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~  117 (248)
                                      +.++++.+++.+...  ..+ ...+++++  +++||++++.  +|+++|+||||+ ||..++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~  199 (330)
T PRK09473        123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ  199 (330)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence                            456778888864211  112 23456654  4999999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHhC-CCeEEEE
Q 025795          118 VLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus       118 ~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ++ +++++++++ |.++++|
T Consensus       200 i~-~lL~~l~~~~g~til~i  218 (330)
T PRK09473        200 IM-TLLNELKREFNTAIIMI  218 (330)
T ss_pred             HH-HHHHHHHHHcCCEEEEE
Confidence            99 999998764 8888766

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.84  E-value=7.7e-21  Score=157.91  Aligned_cols=98  Identities=18%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCC-cccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-VAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~-~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++     .|. +...                            +
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----~~~~q~~~----------------------------L   72 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----VYKPQYID----------------------------L   72 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----EEEcccCC----------------------------C
Confidence            47899999999999999999999999999999988542     231 1100                            3


Q ss_pred             hh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC-CeEEEE
Q 025795           82 ED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAV  136 (248)
Q Consensus        82 ~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~-~~ii~v  136 (248)
                      ++  ++++.+|++++.  +|+++++|||++ ||+.++..+. ++++++.+++ .+++++
T Consensus        73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv  128 (177)
T cd03222          73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV  128 (177)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE
Confidence            33  344899999999  999999999999 9999999998 8888886654 677655

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=2.3e-21  Score=185.30  Aligned_cols=143  Identities=14%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccC---CC----------CCCCCC-------CcccChhhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-------PVAMDIRELIS---   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-~~d---~~----------~~~~~y-------~~~~~i~e~i~---   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+. |.+   +.          ...++|       .+.+++++++.   
T Consensus       311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  390 (520)
T TIGR03269       311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI  390 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence            3689999999999999999999999999999995 421   10          112333       23457776663   


Q ss_pred             ------------HHHHHHHhCCCCCC---chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNG---GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~---~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                  +.++++.+++.+..   ........+++++  +++||++++.  +|+++|+||||+ ||+.+++.+. 
T Consensus       391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~-  467 (520)
T TIGR03269       391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT-  467 (520)
T ss_pred             HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                        34567788886410   0111235566664  4899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++.+ .|.+++++    +|.......+++
T Consensus       468 ~~l~~l~~~~g~tvi~v----sHd~~~~~~~~d  496 (520)
T TIGR03269       468 HSILKAREEMEQTFIIV----SHDMDFVLDVCD  496 (520)
T ss_pred             HHHHHHHHHcCcEEEEE----eCCHHHHHHhCC
Confidence            88888865 47887666    465554444443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=3.1e-21  Score=165.01  Aligned_cols=145  Identities=16%  Similarity=0.150  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh----------------HHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVME   64 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~----------------~~~~m~   64 (248)
                      -.+||+|+||||||||+|+|+|.++|++|+|.+.|.-.  -....++.|++|.||++.                ++++.+
T Consensus        54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIie  133 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIE  133 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999998532  234567788999999986                677777


Q ss_pred             HhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 025795           65 ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF  143 (248)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~  143 (248)
                      .-+||+.....  ...++.++...||-+++...+|++||+||-.+ -|..-++... +.++++.+++.++++|    ||.
T Consensus       134 FaELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V----SHd  206 (249)
T COG1134         134 FAELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV----SHD  206 (249)
T ss_pred             HHHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----ECC
Confidence            77888765444  45677777666666665555999999999999 9999888888 7788886667777766    566


Q ss_pred             ccChHHHHHHH
Q 025795          144 ITDVTKFISGC  154 (248)
Q Consensus       144 ~~d~~~~~s~~  154 (248)
                      ..-..++|+.+
T Consensus       207 ~~~I~~~Cd~~  217 (249)
T COG1134         207 LGAIKQYCDRA  217 (249)
T ss_pred             HHHHHHhcCee
Confidence            66666666643

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.5e-21  Score=165.93  Aligned_cols=140  Identities=18%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~  119 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR  119 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence            4689999999999999999999986     479999999876521         12323 11     246665543    


Q ss_pred             -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.. . .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  196 (260)
T PRK10744        120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE-  196 (260)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         34566777764310 0 011123455543  4899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|...+...+
T Consensus       197 ~~L~~~~~-~~tiii~----sH~~~~~~~~  221 (260)
T PRK10744        197 ELITELKQ-DYTVVIV----THNMQQAARC  221 (260)
T ss_pred             HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence            88888854 6666554    4554433333

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=164.50  Aligned_cols=142  Identities=18%  Similarity=0.282  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-------CcccChhhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS---   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~---   58 (248)
                      -+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..         ..+.|       .+..++++++.   
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  110 (252)
T PRK14256         31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY  110 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence            3689999999999999999999986  3   58999999976521         11222       22356666553   


Q ss_pred             --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                    +.++++.+++....  ........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~  188 (252)
T PRK14256        111 KLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE  188 (252)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence                          23455566764310  0001123455544  3899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                       ++++++.+ +.+++++    +|...+...+++
T Consensus       189 -~~l~~~~~-~~tiiiv----sH~~~~~~~~~d  215 (252)
T PRK14256        189 -ELIEELKE-KYTIIIV----THNMQQAARVSD  215 (252)
T ss_pred             -HHHHHHHh-CCcEEEE----ECCHHHHHhhCC
Confidence             88999865 5666555    455544444433

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=7.6e-21  Score=182.10  Aligned_cols=131  Identities=15%  Similarity=0.225  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCCCC-Cc--------ccChhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~y-~~--------~~~i~e~i   57 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.+.|.++..           ..++| ++        ..++++++
T Consensus        36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~  115 (529)
T PRK15134         36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL  115 (529)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence            46899999999999999999999986     79999998876421           12333 11        12333322


Q ss_pred             -----------------hHHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           58 -----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        58 -----------------~~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                                       .++++++.+|+.+.. ........+++++  +++||++++.  +|+++|+||||+ ||+.++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~  193 (529)
T PRK15134        116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQA  193 (529)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHH
Confidence                             145678888886421 0111234566654  4899999999  999999999999 9999999


Q ss_pred             HHHHHHHHHHHhC-CCeEEEE
Q 025795          117 PVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus       117 ~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      .+. +++++++++ |.++++|
T Consensus       194 ~l~-~~l~~l~~~~g~tvi~v  213 (529)
T PRK15134        194 QIL-QLLRELQQELNMGLLFI  213 (529)
T ss_pred             HHH-HHHHHHHHhcCCeEEEE
Confidence            999 999998754 7887666

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.84  E-value=8.6e-21  Score=163.80  Aligned_cols=128  Identities=17%  Similarity=0.168  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhhH----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL----------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~~----------   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.| ++     ..++++++..          
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~  109 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV  109 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence            4789999999999999999999999999999999865421       12333 11     2366665531          


Q ss_pred             HHHHHHhCCC-----------CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           60 EDVMEELGLG-----------PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        60 ~~~m~~~~L~-----------~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                      .+.++..++.           ......  ...+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. +++++
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~  184 (238)
T cd03249         110 EEAAKKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDR  184 (238)
T ss_pred             HHHHHHcChHHHHHhhccccceeeccC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence            1122222221           111111  12355543  3899999999  999999999999 9999999998 88888


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +. +|.+++++
T Consensus       185 ~~-~g~~vi~~  194 (238)
T cd03249         185 AM-KGRTTIVI  194 (238)
T ss_pred             hc-CCCEEEEE
Confidence            86 67777655

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.84  E-value=1.6e-20  Score=154.69  Aligned_cols=112  Identities=22%  Similarity=0.274  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCch
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL   74 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~   74 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.++..       ..+.| +++..+.+ .++.+.+           
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-----------   96 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-----------   96 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence            4689999999999999999999999999999999876431       11222 11111111 0111111           


Q ss_pred             hhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           75 IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        75 ~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                            ++++  +++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+ +.+++++
T Consensus        97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~  151 (171)
T cd03228          97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI  151 (171)
T ss_pred             ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence                  3333  44899999999  999999999999 9999999998 88888854 6666555

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.84  E-value=1.7e-20  Score=160.90  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.++..       ..+.| ++     ..++++++.          +
T Consensus        30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~  109 (229)
T cd03254          30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV  109 (229)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999865421       22333 11     125555543          2


Q ss_pred             HHHHHHhCCCCCCc---------hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~~~---------~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++.+++.+...         .......+++++  ++.||++++.  +|+++|+|||++ ||+.++..++ ++++++.
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  186 (229)
T cd03254         110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM  186 (229)
T ss_pred             HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence            23333333321100         000012355543  4899999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       ++.+++++
T Consensus       187 -~~~tii~~  194 (229)
T cd03254         187 -KGRTSIII  194 (229)
T ss_pred             -CCCEEEEE
Confidence             47777655

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.6e-21  Score=187.69  Aligned_cols=147  Identities=15%  Similarity=0.221  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---------------------CCCCCCC---------CcccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY---------PVAMD   52 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---------------------~~~~~~y---------~~~~~   52 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+.                     ....++|         .+.++
T Consensus        43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t  122 (623)
T PRK10261         43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT  122 (623)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence            46899999999999999999999999999999876411                     0012222         23467


Q ss_pred             hhhhhh-----------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795           53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE  111 (248)
Q Consensus        53 i~e~i~-----------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD  111 (248)
                      +++++.                 +.++++.+|+.+.. ........+++++  +++||++++.  +|++||+||||+ ||
T Consensus       123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD  200 (623)
T PRK10261        123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD  200 (623)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence            777653                 34567788885311 1111134566664  4899999999  999999999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795          112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      +.++..+. ++++++.++ |.++++|    +|.+.....+++.++.
T Consensus       201 ~~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~v  241 (623)
T PRK10261        201 VTIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLV  241 (623)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEE
Confidence            99999999 999999754 8888766    4555555555554433

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.84  E-value=1.1e-20  Score=200.72  Aligned_cols=145  Identities=14%  Similarity=0.098  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -++||+|||||||||++|+|+|+++|++|+|.+.|.++..      +.++|       .+.++++|++.           
T Consensus      1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257      1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999987631      22333       33578888764           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+++.+.....  ...+++|+  ++.+|++++.  +|+++|+||||+ ||+.+++.++ +++++++++|
T Consensus      2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257      2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence                 34567788887654333  34566654  3889999999  999999999999 9999999999 9999987778


Q ss_pred             CeEEEEEecccccccChHHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      .+++++    +|.+.+...+|+.++.
T Consensus      2121 ~TIILt----TH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257      2121 RAVVLT----SHSMEECEALCTRLAI 2142 (2272)
T ss_pred             CEEEEE----eCCHHHHHHhCCEEEE
Confidence            887655    6777777777665544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=162.70  Aligned_cols=140  Identities=14%  Similarity=0.240  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14251         31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence            4689999999999999999999987     479999999976421         12222 11     246666654    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++...  .........+++++  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-  187 (251)
T PRK14251        111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE-  187 (251)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-
Confidence                         2334555666311  00111234455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|...+...+
T Consensus       188 ~~l~~~~~-~~tiiii----sH~~~~~~~~  212 (251)
T PRK14251        188 ETLMELKH-QYTFIMV----THNLQQAGRI  212 (251)
T ss_pred             HHHHHHHc-CCeEEEE----ECCHHHHHhh
Confidence            88888854 5676655    4555443333

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=165.89  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  119 (269)
T PRK14259         40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR  119 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence            4689999999999999999999987     589999999876421         12333 11     126666553    


Q ss_pred             -----------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                 +.++++.+++...  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~  196 (269)
T PRK14259        120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET  196 (269)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence                       2334556665321  00011123455554  3899999999  999999999999 9999999998 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      ++++++ +.+++++    +|...+...++
T Consensus       197 l~~~~~-~~tiiiv----tH~~~~~~~~~  220 (269)
T PRK14259        197 MHELKK-NFTIVIV----THNMQQAVRVS  220 (269)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHHhc
Confidence            888854 6666555    45554444443

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.4e-20  Score=162.11  Aligned_cols=130  Identities=22%  Similarity=0.263  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+++|+|+++   |++|+|.++|.+...       ..+.| ++     ..++++++.        
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~  108 (246)
T PRK14269         29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM  108 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence            4689999999999999999999974   689999999876531       12233 11     136666552        


Q ss_pred             ----------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                +.++++.+++.+.- . .......+++++  ++++|++++.  +|+++|+|||++ ||+.++..+. +++
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l  185 (246)
T PRK14269        109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL  185 (246)
T ss_pred             ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence                      34567777885310 0 001123455544  4899999999  999999999999 9999999988 888


Q ss_pred             HHHHhCCCeEEEE
Q 025795          124 DHLKSRNFNVCAV  136 (248)
Q Consensus       124 ~~l~~~~~~ii~v  136 (248)
                      +++.+ +.+++++
T Consensus       186 ~~~~~-~~tiii~  197 (246)
T PRK14269        186 KELSH-NLSMIMV  197 (246)
T ss_pred             HHHhC-CCEEEEE
Confidence            88854 7777655

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=165.05  Aligned_cols=130  Identities=22%  Similarity=0.287  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  125 (267)
T PRK14235         46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR  125 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence            47899999999999999999999975     89999999876421         12333 11     125666553    


Q ss_pred             --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                    +.++++.+++.+.-  ........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~  203 (267)
T PRK14235        126 IHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE  203 (267)
T ss_pred             hcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH
Confidence                          23456667774310  0001123455543  4899999999  999999999999 9999999998


Q ss_pred             HHHHHHHHhCCCeEEEE
Q 025795          120 RNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v  136 (248)
                       ++++++.+ +.+++++
T Consensus       204 -~~L~~l~~-~~tiiiv  218 (267)
T PRK14235        204 -ELIDELRQ-NYTIVIV  218 (267)
T ss_pred             -HHHHHHhc-CCeEEEE
Confidence             88888855 6666555

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.84  E-value=3e-20  Score=158.98  Aligned_cols=135  Identities=19%  Similarity=0.286  Sum_probs=101.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------CCCC---------Cc------------------
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PV------------------   49 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~--------~~~y---------~~------------------   49 (248)
                      -+|+||||||||||+++++|...|++|.+.+.|......        .+++         .+                  
T Consensus        60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~  139 (257)
T COG1119          60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI  139 (257)
T ss_pred             EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence            379999999999999999999999999999998655331        1111         11                  


Q ss_pred             ---ccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           50 ---AMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        50 ---~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                         ..|-.+.-.+..+++.+|+....++.++  .++.+  .++.||||++.  +|++||||||++ ||+..+..+. +.+
T Consensus       140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l  214 (257)
T COG1119         140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL  214 (257)
T ss_pred             cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence               2222222337788999999887777654  45554  34899999999  999999999999 9999999998 778


Q ss_pred             HHHHhC--CCeEEEEEecccccccChH
Q 025795          124 DHLKSR--NFNVCAVYLLDSQFITDVT  148 (248)
Q Consensus       124 ~~l~~~--~~~ii~v~l~d~~~~~d~~  148 (248)
                      .++...  +.++++|    +|+..|..
T Consensus       215 ~~~~~~~~~~~ll~V----tHh~eEi~  237 (257)
T COG1119         215 EELAASPGAPALLFV----THHAEEIP  237 (257)
T ss_pred             HHHhcCCCCceEEEE----Ecchhhcc
Confidence            887643  5667666    56665544

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.84  E-value=2.6e-20  Score=160.49  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.++..       ..+.|      ....++++++.          +
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~  107 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV  107 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence            4689999999999999999999999999999998865421       11222      11246666553          1


Q ss_pred             HHHHHHhCCCCC------C--c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPN------G--G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~------~--~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .+.++..++.+.      +  . .......+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++++++.
T Consensus       108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~  184 (236)
T cd03253         108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS  184 (236)
T ss_pred             HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence            222222222110      0  0 000012355543  4899999999  999999999999 9999999998 8888886


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + |.+++++
T Consensus       185 ~-~~tiii~  192 (236)
T cd03253         185 K-GRTTIVI  192 (236)
T ss_pred             C-CCEEEEE
Confidence            6 7777655

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.84  E-value=1.1e-20  Score=182.92  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh-----------HHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~-----------~~~~m~~~~L~   69 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+. ...  ..+.....+..++++++.           +.++++.+++.
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~  444 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE  444 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence            4789999999999999999999999999999874 211  112222234567777654           35678888886


Q ss_pred             CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 025795           70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT  145 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~  145 (248)
                      +.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+ .|.++++|    +|...
T Consensus       445 ~~~~~~--~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv----sHD~~  515 (590)
T PRK13409        445 RLLDKN--VKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV----DHDIY  515 (590)
T ss_pred             HHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence            433222  34566654  4899999999  999999999999 9999999999 99999875 47787666    45554


Q ss_pred             ChHHHHH
Q 025795          146 DVTKFIS  152 (248)
Q Consensus       146 d~~~~~s  152 (248)
                      ....+++
T Consensus       516 ~~~~~aD  522 (590)
T PRK13409        516 MIDYISD  522 (590)
T ss_pred             HHHHhCC
Confidence            4444433

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=162.62  Aligned_cols=140  Identities=16%  Similarity=0.271  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+|     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14270         31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence            47899999999999999999999875     78999999876521         11222 11     246666553    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-  187 (251)
T PRK14270        111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE-  187 (251)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2345666666321  00011123455544  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|...+...+
T Consensus       188 ~~L~~~~~-~~tiiiv----sH~~~~~~~~  212 (251)
T PRK14270        188 DLMVELKK-EYTIVIV----THNMQQASRV  212 (251)
T ss_pred             HHHHHHHh-CCeEEEE----EcCHHHHHHh
Confidence            88888865 5666555    4555433333

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=1.3e-20  Score=180.21  Aligned_cols=129  Identities=16%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEe-----------------------ccCC-------C---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A---------   41 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~-----------------------~~d~-------~---------   41 (248)
                      -+++|+||||||||||+++|+|++  +|++|+|.+.                       |.+.       .         
T Consensus        27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  106 (520)
T TIGR03269        27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR  106 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence            468999999999999999999997  7999999986                       2111       0         


Q ss_pred             -CCCCCC--------CcccChhhhhh----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc
Q 025795           42 -AENFDY--------PVAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD   94 (248)
Q Consensus        42 -~~~~~y--------~~~~~i~e~i~----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~   94 (248)
                       ...+.|        .+..++++++.                +.++++.+|+.+.....  ...+++++  +++||++++
T Consensus       107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~iA~al~  184 (520)
T TIGR03269       107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLA  184 (520)
T ss_pred             hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHHHHHHHHHHh
Confidence             011222        22346666553                45678888886543222  34566664  489999999


Q ss_pred             cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        95 ~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      .  +|+++|+||||+ ||+.++..+. ++++++.+ .|.++++|
T Consensus       185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv  225 (520)
T TIGR03269       185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT  225 (520)
T ss_pred             c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence            9  999999999999 9999999999 88999865 47887766

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.5e-20  Score=162.13  Aligned_cols=130  Identities=18%  Similarity=0.281  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-C-----cccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P-----VAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~-----~~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.++..         ..+.| +     ...++++++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  109 (250)
T PRK14262         30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence            46899999999999999999999874     89999999866421         12222 1     1246666554    


Q ss_pred             -------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.-.  .......+++++  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~-  186 (250)
T PRK14262        110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE-  186 (250)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence                         223455566643100  011123455543  4899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       187 ~~l~~~~~-~~tili~  201 (250)
T PRK14262        187 KLLEELSE-NYTIVIV  201 (250)
T ss_pred             HHHHHHhc-CcEEEEE
Confidence            88888864 6666555

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.6e-20  Score=162.08  Aligned_cols=140  Identities=18%  Similarity=0.260  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC---CCC--CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~---l~~--~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+   .++  ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~  109 (250)
T PRK14245         30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence            46899999999999999999997   454  58999999876421         12333 11     135555543    


Q ss_pred             -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.-  ........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  186 (250)
T PRK14245        110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE-  186 (250)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         34556667774311  1111123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++. ++.+++++    +|...+...+
T Consensus       187 ~~l~~~~-~~~tiiiv----tH~~~~~~~~  211 (250)
T PRK14245        187 ELIHELK-KDYTIVIV----THNMQQAARV  211 (250)
T ss_pred             HHHHHHh-cCCeEEEE----eCCHHHHHhh
Confidence            8888885 46676655    4554433333

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.83  E-value=2e-20  Score=160.33  Aligned_cols=128  Identities=17%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| ++     ..++++++.           
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~  120 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV  120 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence            4689999999999999999999999999999999865421       11222 11     124554442           


Q ss_pred             --------HHHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 --------~~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                              +.++++.+  |+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~  195 (226)
T cd03248         121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD  195 (226)
T ss_pred             HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence                    23445555  454332221  23455543  4899999999  999999999999 9999999988 88888


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+ +.+++++
T Consensus       196 ~~~-~~tii~~  205 (226)
T cd03248         196 WPE-RRTVLVI  205 (226)
T ss_pred             HcC-CCEEEEE
Confidence            854 5666555

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.1e-20  Score=164.49  Aligned_cols=130  Identities=19%  Similarity=0.283  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  127 (268)
T PRK14248         48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK  127 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            4689999999999999999999864     689999999876421         12333 11     125666543    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++...  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  204 (268)
T PRK14248        128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE-  204 (268)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence                         2234445555321  00111123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       205 ~~l~~~~~-~~tiii~  219 (268)
T PRK14248        205 ELITELKE-EYSIIIV  219 (268)
T ss_pred             HHHHHHhc-CCEEEEE
Confidence            88998854 5666554

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.5e-20  Score=154.82  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=102.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---C------CCCCCCcccChhhhhh----------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---A------ENFDYPVAMDIRELIS----------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---~------~~~~y~~~~~i~e~i~----------------   58 (248)
                      .++++||+||||||++++++|+.+|..|+|.++|....   .      ++-...|.+++.|++.                
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~  112 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI  112 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            57899999999999999999999999999999997542   1      3334456678888875                


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      +.+.+..+||+...... . -.++++++  +-+||+++.  +|+++++|||+. +|..+++.+..-++.-+++.|+.+++
T Consensus       113 a~q~l~~VgL~~~~~~~-i-~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll  188 (259)
T COG4525         113 AHQMLALVGLEGAEHKY-I-WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL  188 (259)
T ss_pred             HHHHHHHhCcccccccc-e-EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence            67788899998776332 2 24666654  889999999  999999999998 99999999883444445566887766


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      |
T Consensus       189 i  189 (259)
T COG4525         189 I  189 (259)
T ss_pred             E
Confidence            5

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=178.32  Aligned_cols=141  Identities=13%  Similarity=0.173  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhh-----h--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIREL-----I--   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~-----i--   57 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.+.|.++..        ..++|          .++.++.++     +  
T Consensus       275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  354 (491)
T PRK10982        275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN  354 (491)
T ss_pred             cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence            4789999999999999999999999999999999866531        11222          112232221     1  


Q ss_pred             ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     .+.++++.++++. .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~  430 (491)
T PRK10982        355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--IGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEI  430 (491)
T ss_pred             hcccccccCcHHHHHHHHHHHHhcCccCCCcccc--cccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHH
Confidence                           1456677777752 22222  34566654  4899999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      + ++++++.+.|.+++++    +|...+...+++
T Consensus       431 ~-~~l~~l~~~~~tvi~v----sHd~~~~~~~~d  459 (491)
T PRK10982        431 Y-QLIAELAKKDKGIIII----SSEMPELLGITD  459 (491)
T ss_pred             H-HHHHHHHHCCCEEEEE----CCChHHHHhhCC
Confidence            9 8999987778888766    576665555544

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.4e-20  Score=163.22  Aligned_cols=130  Identities=19%  Similarity=0.282  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|.++  |   ++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  118 (259)
T PRK14274         39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR  118 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence            3689999999999999999999987  3   58999999876421         12333 11     126665553    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  195 (259)
T PRK14274        119 IHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE-  195 (259)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence                         2234556666431  00111123455544  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       196 ~~l~~~~~-~~tiiiv  210 (259)
T PRK14274        196 ELILKLKE-KYTIVIV  210 (259)
T ss_pred             HHHHHHhc-CCEEEEE
Confidence            88888864 6666555

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.83  E-value=2.4e-20  Score=159.08  Aligned_cols=132  Identities=16%  Similarity=0.259  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C-----cccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P-----VAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~-----~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.++..           ..+.| +     .+.++++++.       
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~  107 (218)
T cd03290          28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK  107 (218)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence            3689999999999999999999999999999998865321           12323 1     1346666664       


Q ss_pred             --HHHHHHHhCCCCCCc---------hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH-HH
Q 025795           59 --LEDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV  123 (248)
Q Consensus        59 --~~~~m~~~~L~~~~~---------~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~-ll  123 (248)
                        ..++++.+++.+.-.         .......+++++  +++||++++.  +|+++|+||||+ ||+.++..+++. ++
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll  185 (218)
T cd03290         108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL  185 (218)
T ss_pred             HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence              234455555432100         000123355543  4899999999  999999999999 999999998832 77


Q ss_pred             HHHHhCCCeEEEE
Q 025795          124 DHLKSRNFNVCAV  136 (248)
Q Consensus       124 ~~l~~~~~~ii~v  136 (248)
                      +.+++.|.+++++
T Consensus       186 ~~~~~~~~tii~~  198 (218)
T cd03290         186 KFLQDDKRTLVLV  198 (218)
T ss_pred             HHHhcCCCEEEEE
Confidence            7776667777665

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.83  E-value=9.9e-21  Score=183.30  Aligned_cols=128  Identities=23%  Similarity=0.269  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC---------CCCC----C---Ccc---cC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFD----Y---PVA---MD   52 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~---------~~~~----y---~~~---~~   52 (248)
                      -+++|+||||||||||+|+|+|+++|+.|+|.           +.|.+...         ..+.    |   .+.   .+
T Consensus       100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t  179 (590)
T PRK13409        100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK  179 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence            47899999999999999999999999999997           77755311         1111    1   111   26


Q ss_pred             hhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        53 i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                      +++++.       ++++++.+++.......  ...+++++  +++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus       180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~  254 (590)
T PRK13409        180 VRELLKKVDERGKLDEVVERLGLENILDRD--ISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL  254 (590)
T ss_pred             HHHHHHhhhHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence            666653       57788899997543332  34566654  4899999999  999999999999 9999999999 89


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      ++++.+ |.+++++
T Consensus       255 i~~l~~-g~tvIiv  267 (590)
T PRK13409        255 IRELAE-GKYVLVV  267 (590)
T ss_pred             HHHHHC-CCEEEEE
Confidence            999977 8887766

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.83  E-value=4.7e-20  Score=157.26  Aligned_cols=138  Identities=9%  Similarity=-0.103  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-EeccCCCC-CCCCCCcccChhhhhhH------------H-HHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG   67 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-i~~~d~~~-~~~~y~~~~~i~e~i~~------------~-~~m~~~~   67 (248)
                      -+++|+||||||||||+++|+|+++|++|+|. +.|..... ....+.+.+++++++..            . .+.+..+
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~   93 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ   93 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999997 66543211 12223566788887752            1 1123344


Q ss_pred             CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795           68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI  144 (248)
Q Consensus        68 L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~  144 (248)
                      +++....  ....+++++  ++++|++++.  +|+++|+|||++ +|+.++..+. +.+.+..+ +.+++++    +|..
T Consensus        94 l~~~~~~--~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~-~~~ii~v----sH~~  163 (213)
T PRK15177         94 LEQCYTD--RVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ-QKGLIVL----THNP  163 (213)
T ss_pred             hhHHhhc--hHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh-CCcEEEE----ECCH
Confidence            4432211  123455544  3889999999  999999999998 9999998888 65543323 3455444    5666


Q ss_pred             cChHHH
Q 025795          145 TDVTKF  150 (248)
Q Consensus       145 ~d~~~~  150 (248)
                      .....+
T Consensus       164 ~~~~~~  169 (213)
T PRK15177        164 RLIKEH  169 (213)
T ss_pred             HHHHHh
Confidence            544444

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.83  E-value=2.4e-20  Score=154.51  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-Cc-----ccChhhhhhHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELISLEDVMEELGLGP   70 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-~~-----~~~i~e~i~~~~~m~~~~L~~   70 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.++..      ..+.| ++     ..++++++             
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i-------------   95 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL-------------   95 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-------------
Confidence            4689999999999999999999999999999999875421      12223 11     12344333             


Q ss_pred             CCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                             ...++++  +++.||++++.  +|+++|+|||++ ||+.++..++ ++++++. ++.+++++
T Consensus        96 -------~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~  153 (178)
T cd03247          96 -------GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWI  153 (178)
T ss_pred             -------cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence                   1224443  34899999999  999999999999 9999999988 8888885 46777655

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.83  E-value=4e-20  Score=160.46  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-Ccc------cChhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELI--------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~y-~~~------~~i~e~i--------   57 (248)
                      -+++|+||||||||||+++|+|+.  +|++|+|.++|.+...        ..+.| +++      .+...+.        
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  107 (248)
T PRK09580         28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  107 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence            468999999999999999999995  6999999999876421        12322 111      1111100        


Q ss_pred             ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     .++++++.+++.+ ...... ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l  184 (248)
T PRK09580        108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIV  184 (248)
T ss_pred             cccccccchHHHHHHHHHHHHHHcCCChhhcccCC-CCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence                           1344555666632 111111 01355543  4899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025795          119 LRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (248)
                      . ++++++++.+.+++++
T Consensus       185 ~-~~l~~l~~~~~tiii~  201 (248)
T PRK09580        185 A-DGVNSLRDGKRSFIIV  201 (248)
T ss_pred             H-HHHHHHHhCCCEEEEE
Confidence            8 8888887667777665

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.2e-20  Score=162.94  Aligned_cols=142  Identities=18%  Similarity=0.265  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC------CcccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y------~~~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|     .+|+|.++|.+...         ..+.|      ....++++++.    
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  114 (261)
T PRK14263         35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR  114 (261)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence            47899999999999999999999986     79999999976421         12222      11356766653    


Q ss_pred             -----------HHHHHHHhCCCCCCchh--hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPNGGLI--YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~~~~~--~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                 +.++++.+++.+.....  .....+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~  191 (261)
T PRK14263        115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL  191 (261)
T ss_pred             hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                       34567777775421111  1123455543  4899999999  999999999999 9999999999 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++. ++.+++++    +|...+..++++
T Consensus       192 l~~~~-~~~tii~i----sH~~~~i~~~~d  216 (261)
T PRK14263        192 MVELK-KDYTIALV----THNMQQAIRVAD  216 (261)
T ss_pred             HHHHh-cCCeEEEE----eCCHHHHHHhCC
Confidence            88885 46666554    455544444433

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.4e-20  Score=161.50  Aligned_cols=130  Identities=22%  Similarity=0.309  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.+.|.+..         ...+.| ++     ..++++++.    
T Consensus        32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~  111 (251)
T PRK14244         32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK  111 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence            4689999999999999999999986     46999999886531         112223 11     125555442    


Q ss_pred             --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                    +.++++.+|+.+.-  ........+++++  +++||++++.  +|+++|+||||+ ||+.++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~  189 (251)
T PRK14244        112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE  189 (251)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence                          23557777875410  0011123455554  3899999999  999999999999 9999999988


Q ss_pred             HHHHHHHHhCCCeEEEE
Q 025795          120 RNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v  136 (248)
                       ++++++. ++.+++++
T Consensus       190 -~~l~~~~-~~~tiiii  204 (251)
T PRK14244        190 -NLIQELK-KNFTIIVV  204 (251)
T ss_pred             -HHHHHHh-cCCeEEEE
Confidence             8888885 47777655

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.83  E-value=4e-20  Score=156.08  Aligned_cols=120  Identities=17%  Similarity=0.181  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-CcccChhhhhhHHHHHHHhCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN   71 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~   71 (248)
                      -+++|+||||||||||+++|+|+  ++|++|+|.++|.++..        ..+.| +++.......++.+.++..     
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~-----  101 (200)
T cd03217          27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV-----  101 (200)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc-----
Confidence            46899999999999999999999  47999999999976532        12333 2221111122233333211     


Q ss_pred             CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           72 GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        72 ~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                            ...++++  +++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.+++.+++++
T Consensus       102 ------~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~  160 (200)
T cd03217         102 ------NEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII  160 (200)
T ss_pred             ------cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence                  0234444  34899999999  999999999999 9999999998 8888887667777665

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.2e-20  Score=161.42  Aligned_cols=130  Identities=19%  Similarity=0.301  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|+.++     ++|+|.++|.++..         ..+.| ++     ..++++++..   
T Consensus        30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~  109 (250)
T PRK14240         30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            46899999999999999999998763     68999999876431         12223 11     2466666542   


Q ss_pred             --------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        60 --------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                    .++++.+++.+.  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-  186 (250)
T PRK14240        110 THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE-  186 (250)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                          223444554310  00001123355543  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       187 ~~l~~~~~-~~tiii~  201 (250)
T PRK14240        187 ELIQELKK-DYTIVIV  201 (250)
T ss_pred             HHHHHHhc-CCeEEEE
Confidence            88888854 6676655

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=164.03  Aligned_cols=140  Identities=23%  Similarity=0.300  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.+..         .+.+.| ++     ..++++++.    
T Consensus        47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  126 (267)
T PRK14237         47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE  126 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence            4689999999999999999999986     57999999987652         112333 11     136666654    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  203 (267)
T PRK14237        127 RAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE-  203 (267)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2233556666321  00001123355543  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|...+...+
T Consensus       204 ~~l~~~~~-~~tiii~----tH~~~~~~~~  228 (267)
T PRK14237        204 ETMFELKK-NYTIIIV----THNMQQAARA  228 (267)
T ss_pred             HHHHHHhc-CCEEEEE----ecCHHHHHHh
Confidence            88888854 6666555    4544433333

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.6e-20  Score=161.24  Aligned_cols=140  Identities=17%  Similarity=0.216  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CC---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~---~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.  +|   ++|+|.++|.++.         ...+.| ++     ..++++++.    
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  111 (252)
T PRK14239         32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR  111 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence            468999999999999999999985  36   4899999987642         112333 11     246776654    


Q ss_pred             -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.- . .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  188 (252)
T PRK14239        112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE-  188 (252)
T ss_pred             HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence                         12244455553210 0 001123355543  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|...+...+
T Consensus       189 ~~l~~~~~-~~tii~~----sH~~~~~~~~  213 (252)
T PRK14239        189 ETLLGLKD-DYTMLLV----TRSMQQASRI  213 (252)
T ss_pred             HHHHHHhh-CCeEEEE----ECCHHHHHHh
Confidence            88888854 5666555    4555433333

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4e-20  Score=161.02  Aligned_cols=140  Identities=18%  Similarity=0.265  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|+++|.     +|+|.++|.++..         ..+.| ++     ..++++++..   
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  110 (251)
T PRK14249         31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR  110 (251)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence            468999999999999999999999987     6999999876421         12223 11     1256665531   


Q ss_pred             --------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        60 --------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                    +++++.+++.+.  .........+++++  +++||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  187 (251)
T PRK14249        111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE-  187 (251)
T ss_pred             hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                          223334554321  00001123355543  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++. ++.+++++    +|...+...+
T Consensus       188 ~~l~~~~-~~~tiliv----sh~~~~~~~~  212 (251)
T PRK14249        188 ELMQELK-QNYTIAIV----THNMQQAARA  212 (251)
T ss_pred             HHHHHHh-cCCEEEEE----eCCHHHHHhh
Confidence            8888884 57777655    4555444443

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.83  E-value=5.7e-20  Score=155.25  Aligned_cols=131  Identities=23%  Similarity=0.223  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLG---   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~---   69 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|. ....+...+ ...++++++.         ..+..+.+++.   
T Consensus        32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l-~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~  110 (204)
T cd03250          32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWI-QNGTIRENILFGKPFDEERYEKVIKACALEPDL  110 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchh-ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHH
Confidence            468999999999999999999999999999998771 111111111 1345555553         12333333321   


Q ss_pred             ---CCCc---hhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 ---PNGG---LIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ---~~~~---~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         |.+-   .......++.+  ++++||++++.  +|+++|+|||++ ||+.+++.+.+.+++.+.+.+.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~  184 (204)
T cd03250         111 EILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV  184 (204)
T ss_pred             HhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence               1100   00001234444  34899999999  999999999999 999999988834667665557777766

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=1.1e-20  Score=158.94  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC----------------CCCCCcccChhhhhh---------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS---------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~----------------~~~y~~~~~i~e~i~---------   58 (248)
                      ++.|+|.||||||||+++++|.+.|++|+|.++|.|....                ..+-.+.+||.|++.         
T Consensus        34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r  113 (263)
T COG1101          34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR  113 (263)
T ss_pred             eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence            5779999999999999999999999999999999887431                112245789999885         


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                                   ..+-++.+++|-..-+-..+..++++++++++..++.+..|+++++||-|+ |||.+...++ ++-.
T Consensus       114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm-~lT~  192 (263)
T COG1101         114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM-ELTA  192 (263)
T ss_pred             ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHH-HHHH
Confidence                         445555666553333334478899998866665555554999999999999 9999999999 8777


Q ss_pred             HHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHh
Q 025795          125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ  163 (248)
Q Consensus       125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~  163 (248)
                      ++.+ .+.|.++|    +|.+.+..+|=.+.++..++.+.
T Consensus       193 kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~Iv  228 (263)
T COG1101         193 KIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIV  228 (263)
T ss_pred             HHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEE
Confidence            7764 57777666    68898888887766555555433

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.83  E-value=1.7e-20  Score=179.75  Aligned_cols=140  Identities=18%  Similarity=0.238  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----------CCCCCC---------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY---------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----------~~~~~y---------~~~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++ ++|+|+++|.++.          ...+.|         .+..++++++.     
T Consensus       313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~  391 (529)
T PRK15134        313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV  391 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence            4689999999999999999999985 8999999986542          112333         12346665542     


Q ss_pred             -------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 -------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                   +.++++.+++.+ .....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..++ +
T Consensus       392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~  466 (529)
T PRK15134        392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRY--PAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A  466 (529)
T ss_pred             ccccCChHHHHHHHHHHHHHcCCCHHHHhcC--CccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence                         345677788853 22211  24566654  4899999999  999999999999 9999999999 9


Q ss_pred             HHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++++ |.+++++    +|.......+++
T Consensus       467 ~l~~~~~~~~~tvi~v----sHd~~~~~~~~d  494 (529)
T PRK15134        467 LLKSLQQKHQLAYLFI----SHDLHVVRALCH  494 (529)
T ss_pred             HHHHHHHhhCCEEEEE----eCCHHHHHHhcC
Confidence            99998764 7787766    465554444433

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.83  E-value=2.7e-20  Score=158.87  Aligned_cols=130  Identities=21%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~---------~~   60 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...       ..+.|      ....++++++.         +.
T Consensus        31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~  110 (221)
T cd03244          31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW  110 (221)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence            4689999999999999999999999999999999865421       12222      11236666653         34


Q ss_pred             HHHHHhCCCCCCch---------hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGPNGGL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~~~~~---------~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      +.++.+++.+....         ......++.++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus       111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~  187 (221)
T cd03244         111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK  187 (221)
T ss_pred             HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence            45555555321100         00123355443  4899999999  999999999999 9999999988 88888754


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                       +.+++++
T Consensus       188 -~~tii~~  194 (221)
T cd03244         188 -DCTVLTI  194 (221)
T ss_pred             -CCEEEEE
Confidence             5666544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.7e-20  Score=162.93  Aligned_cols=141  Identities=16%  Similarity=0.262  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  145 (285)
T PRK14254         66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK  145 (285)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence            4689999999999999999999987     689999998866421         11222 11     126666553    


Q ss_pred             -----------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -----------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                 +.++++.+++.+.-  ........+++++  +++||++++.  +|+++|+|||++ ||+.++..+. ++
T Consensus       146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~  222 (285)
T PRK14254        146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL  222 (285)
T ss_pred             HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence                       34556677774321  0111123455554  4899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      ++++.+ +.+++++    +|...+...++
T Consensus       223 L~~~~~-~~tiii~----tH~~~~i~~~~  246 (285)
T PRK14254        223 IEELAE-EYTVVIV----THNMQQAARIS  246 (285)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHhhc
Confidence            999865 4566544    45554434333

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.7e-20  Score=161.71  Aligned_cols=143  Identities=18%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|+     +|+|.++|.++.         ...+.| ++     ..++++++.    
T Consensus        34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~  113 (261)
T PRK14258         34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK  113 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence            478999999999999999999999985     799999887642         011222 11     146665543    


Q ss_pred             -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.-  ........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~-  190 (261)
T PRK14258        114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE-  190 (261)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         23455566663210  0011123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++++ .+.+++++    +|...+...+++
T Consensus       191 ~~l~~l~~~~~~tiiiv----sH~~~~i~~~~d  219 (261)
T PRK14258        191 SLIQSLRLRSELTMVIV----SHNLHQVSRLSD  219 (261)
T ss_pred             HHHHHHHHhCCCEEEEE----ECCHHHHHHhcC
Confidence            88888764 47777666    455554444443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.83  E-value=4e-20  Score=196.43  Aligned_cols=142  Identities=15%  Similarity=0.204  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|.+...      +.++|       .+.++++|++.           
T Consensus       957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257       957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred             cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999987532      22333       34578888764           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++++|+.+.....  ...+++|++  ++||++++.  +|+++|+||||+ ||+.+++.++ +++++++ +|
T Consensus      1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257      1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred             HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence                 45678888987653333  345666654  899999999  999999999999 9999999999 9999985 57


Q ss_pred             CeEEEEEecccccccChHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      .+++++    +|.+.+...+++.+
T Consensus      1111 ~TIIlt----THdmdea~~laDrI 1130 (2272)
T TIGR01257      1111 RTIIMS----THHMDEADLLGDRI 1130 (2272)
T ss_pred             CEEEEE----ECCHHHHHHhCCEE
Confidence            777655    45555555444433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=159.73  Aligned_cols=140  Identities=16%  Similarity=0.222  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-------CcccChhhhhhH--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-------PVAMDIRELISL--   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~~--   59 (248)
                      -+++|+||||||||||+++|+|.++|.     +|+|.++|.+...         ..+.|       .+..++++++..  
T Consensus        31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~  110 (252)
T PRK14272         31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL  110 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence            368999999999999999999999874     7999999876421         12333       223567766641  


Q ss_pred             ---------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           60 ---------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        60 ---------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                     .++++.+++...  .........+++++  +++||++++.  +|+++|+|||++ ||+.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~  188 (252)
T PRK14272        111 KLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE  188 (252)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence                           111222333210  00011123455554  3899999999  999999999999 9999999988


Q ss_pred             HHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                       ++++++++ +.+++++    +|.......+
T Consensus       189 -~~l~~~~~-~~tiii~----sH~~~~~~~~  213 (252)
T PRK14272        189 -DLMTDLKK-VTTIIIV----THNMHQAARV  213 (252)
T ss_pred             -HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence             88888854 6666555    4554433333

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.82  E-value=9.8e-20  Score=154.15  Aligned_cols=124  Identities=20%  Similarity=0.213  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh------HHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS------LEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~------~~~~m   63 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.+...       ..+.|      ....++++++.      .+++.
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~  114 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY  114 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence            4689999999999999999999999999999999875421       12222      11236666653      22333


Q ss_pred             HHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           64 EELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+++...      ...++++  ++++||++++.  +|+++|+|||++ ||+.++..+. ++++++. ++.+++++
T Consensus       115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~  180 (207)
T cd03369         115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI  180 (207)
T ss_pred             HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE
Confidence            33443222      2335554  34899999999  999999999999 9999999888 8888874 47777655

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.82  E-value=2.6e-20  Score=182.49  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCC---CCCCC-------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|..+|.  +|+|.++|.+...   ..+.|       .+.+|++|++.            
T Consensus        95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~  174 (659)
T PLN03211         95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT  174 (659)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence            478999999999999999999999885  8999999976521   12333       33567877764            


Q ss_pred             -------HHHHHHHhCCCCCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                             ++++++.+||.+......   ....+++++  ++.||++++.  +|+++++||||+ ||..++..+. +++++
T Consensus       175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~  251 (659)
T PLN03211        175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS  251 (659)
T ss_pred             HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence                   355777888865321100   012355543  4999999999  999999999999 9999999999 89999


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      ++++|.+++++
T Consensus       252 l~~~g~TvI~~  262 (659)
T PLN03211        252 LAQKGKTIVTS  262 (659)
T ss_pred             HHhCCCEEEEE
Confidence            97778887655

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.9e-20  Score=162.07  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|++++     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  131 (272)
T PRK14236         52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR  131 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence            47899999999999999999999874     89999999876531         12222 11     126666553    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.  .........+++++  +++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-  208 (272)
T PRK14236        132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE-  208 (272)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         2334455566431  00001123455543  4899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++++ +.+++++
T Consensus       209 ~~L~~~~~-~~tiiiv  223 (272)
T PRK14236        209 ELITELKS-KYTIVIV  223 (272)
T ss_pred             HHHHHHHh-CCeEEEE
Confidence            88998865 6666554

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=7.9e-20  Score=160.10  Aligned_cols=140  Identities=21%  Similarity=0.266  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec------cCCC-------CCCCCC-------CcccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~------~d~~-------~~~~~y-------~~~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.|      .+..       ...+.|       .+..++++++.    
T Consensus        37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~  116 (257)
T PRK14246         37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK  116 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence            47899999999999999999999999987766554      3321       111222       23456666553    


Q ss_pred             -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+..  ........++.++  +..||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~-  193 (257)
T PRK14246        117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE-  193 (257)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         24456667775310  0001123344443  4899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +++.++.+ +.+++++    +|.......+
T Consensus       194 ~~l~~~~~-~~tiilv----sh~~~~~~~~  218 (257)
T PRK14246        194 KLITELKN-EIAIVIV----SHNPQQVARV  218 (257)
T ss_pred             HHHHHHhc-CcEEEEE----ECCHHHHHHh
Confidence            88888854 5676655    4555433333

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=6.8e-20  Score=159.30  Aligned_cols=140  Identities=19%  Similarity=0.257  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC--------CCCCC-Cc-----ccChhhhhhH----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELISL----   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~y-~~-----~~~i~e~i~~----   59 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.+.|.+...        ..+.| ++     ..++++++..    
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~  109 (249)
T PRK14253         30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA  109 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence            47899999999999999999999986     58999999865421        12223 11     2466665531    


Q ss_pred             -------------HHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           60 -------------EDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        60 -------------~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                   .++++.+++.+.- . .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~  186 (249)
T PRK14253        110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E  186 (249)
T ss_pred             cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence                         2233445543210 0 001122344443  4899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +++++.+ +.+++++    +|...+...+
T Consensus       187 ~l~~~~~-~~tii~~----sh~~~~~~~~  210 (249)
T PRK14253        187 LMEELKK-NYTIVIV----THSMQQARRI  210 (249)
T ss_pred             HHHHHhc-CCeEEEE----ecCHHHHHHh
Confidence            9999865 5666555    4554433433

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.6e-20  Score=162.20  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+|+||||||||+++|+|+++     |++|+|.++|.+..         ...+.| ++     ..++++++..   
T Consensus        51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~  130 (271)
T PRK14238         51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK  130 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence            4789999999999999999999987     69999999987642         112223 11     1366666541   


Q ss_pred             --------------HHHHHHhCCCCC-C-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           60 --------------EDVMEELGLGPN-G-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        60 --------------~~~m~~~~L~~~-~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                    .++++.+++... . ........++++.  +++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-  207 (271)
T PRK14238        131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE-  207 (271)
T ss_pred             hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence                          122223322100 0 0001123354443  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|.......+
T Consensus       208 ~~l~~~~~-~~tiiiv----sH~~~~i~~~  232 (271)
T PRK14238        208 ELVQELKK-DYSIIIV----THNMQQAARI  232 (271)
T ss_pred             HHHHHHHc-CCEEEEE----EcCHHHHHHh
Confidence            88888865 6666555    4555433333

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.7e-19  Score=148.69  Aligned_cols=126  Identities=14%  Similarity=0.064  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------------CCCCCcccChhhhhh------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~-------------~~~y~~~~~i~e~i~------------   58 (248)
                      .+.|.||||||||||+|+++|+++|++|+|++.|..+..+             ..+..+.+|++|++.            
T Consensus        30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~  109 (209)
T COG4133          30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA  109 (209)
T ss_pred             EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence            5679999999999999999999999999999998765432             122345788888875            


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (248)
                       +.++++.+||........  .+++.+++  ++||+-++.  .+++.|+|||+. ||......+- .++..-.+.|..|+
T Consensus       110 ~i~~Al~~vgL~g~~dlp~--~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiVl  184 (209)
T COG4133         110 TIWEALAQVGLAGLEDLPV--GQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIVL  184 (209)
T ss_pred             hHHHHHHHcCcccccccch--hhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEEE
Confidence             678899999987766553  35665543  999999998  999999999998 9999987776 76666555544443

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=159.02  Aligned_cols=142  Identities=20%  Similarity=0.290  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+|+||||||||+++|+|+++|     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  113 (259)
T PRK14260         34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR  113 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence            47899999999999999999999885     48999999875421         12222 11     246666653    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++...  .........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-  190 (259)
T PRK14260        114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE-  190 (259)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         2344555666321  00011123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++.+ +.+++++    +|...+...+++
T Consensus       191 ~~l~~~~~-~~tiii~----tH~~~~i~~~~d  217 (259)
T PRK14260        191 ELIHSLRS-ELTIAIV----THNMQQATRVSD  217 (259)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence            88888854 5666655    465554444433

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.82  E-value=7.3e-20  Score=150.26  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+..-   ..+.. +.+..++++++...        .        ..
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~-~~~~~tv~~nl~~~--------~--------~~   90 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRP-YLPLGTLREQLIYP--------W--------DD   90 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCC-ccccccHHHHhhcc--------C--------CC
Confidence            46899999999999999999999999999999876310   01111 11234666655321        0        12


Q ss_pred             hhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        80 ~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .++++  +++.+|++++.  +|+++|+|||++ ||+.++..+. ++++++   +.+++++
T Consensus        91 ~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv  144 (166)
T cd03223          91 VLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV  144 (166)
T ss_pred             CCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE
Confidence            34444  34899999999  999999999999 9999998888 777765   4566555

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.3e-20  Score=176.37  Aligned_cols=139  Identities=16%  Similarity=0.150  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhh---------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS---------------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~---------------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. .  ..+.....+..++++++.                     
T Consensus        28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  107 (530)
T PRK15064         28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE  107 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence            4689999999999999999999999999999987521 1  011112223344443322                     


Q ss_pred             ---------------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795           59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        59 ---------------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                                                 +.++++.+|+...... .....+++++  +++||++++.  +|+++|+||||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~  184 (530)
T PRK15064        108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY-GLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN  184 (530)
T ss_pred             cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc-CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence                                       3456777777532111 1235566665  4899999999  999999999999


Q ss_pred             -cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                       ||+.++..+. ++++   +.+.++++|    +|.......+++
T Consensus       185 ~LD~~~~~~l~-~~l~---~~~~tiiiv----sHd~~~~~~~~d  220 (530)
T PRK15064        185 NLDINTIRWLE-DVLN---ERNSTMIII----SHDRHFLNSVCT  220 (530)
T ss_pred             ccCHHHHHHHH-HHHH---hCCCeEEEE----eCCHHHHHhhcc
Confidence             9999998877 6654   347777665    455544444443

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=9.2e-20  Score=162.08  Aligned_cols=140  Identities=17%  Similarity=0.279  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++.         ...+.| ++     ..+++|++.    
T Consensus        66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  145 (286)
T PRK14275         66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR  145 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence            4789999999999999999999864     48999999986542         112333 11     126666553    


Q ss_pred             -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++...  .........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~-  222 (286)
T PRK14275        146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE-  222 (286)
T ss_pred             hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence                         2234455555310  00111123455554  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++++.+ +.+++++    +|.......+
T Consensus       223 ~~L~~~~~-~~tvIiv----sH~~~~~~~~  247 (286)
T PRK14275        223 DLIQELRG-SYTIMIV----THNMQQASRV  247 (286)
T ss_pred             HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence            88888854 5666554    4555433333

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.7e-20  Score=161.48  Aligned_cols=142  Identities=16%  Similarity=0.227  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++..   
T Consensus        37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~  116 (264)
T PRK14243         37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR  116 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence            4789999999999999999999976     378999999876421         12222 11     1366665531   


Q ss_pred             ------------HHHHHHhCCCCC-C-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           60 ------------EDVMEELGLGPN-G-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        60 ------------~~~m~~~~L~~~-~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                  .++++.+++... . ........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. ++
T Consensus       117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~  193 (264)
T PRK14243        117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL  193 (264)
T ss_pred             hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence                        223444454210 0 0001122355543  4899999999  999999999999 9999999988 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++.+ +.+++++    +|...+...+++
T Consensus       194 L~~~~~-~~tvi~v----tH~~~~~~~~~d  218 (264)
T PRK14243        194 MHELKE-QYTIIIV----THNMQQAARVSD  218 (264)
T ss_pred             HHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence            998865 4666555    455544444433

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.3e-19  Score=160.41  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC--------CCCCCC-Cc-----ccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~--------~~~~~y-~~-----~~~i~e~i~-----   58 (248)
                      -+++|+||||||||||+++|+|+++|     ++|+|.++|.+..        ...+.| ++     ..++++++.     
T Consensus        48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~  127 (276)
T PRK14271         48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA  127 (276)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence            46899999999999999999999985     6999999886532        112222 11     246666553     


Q ss_pred             ------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                  +.++++.+++.....  .......+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +
T Consensus       128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~  204 (276)
T PRK14271        128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E  204 (276)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence                        133456667653110  011123455554  4899999999  999999999999 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      +++++.+ +.+++++    +|...+...+
T Consensus       205 ~L~~~~~-~~tiiiv----sH~~~~~~~~  228 (276)
T PRK14271        205 FIRSLAD-RLTVIIV----THNLAQAARI  228 (276)
T ss_pred             HHHHHhc-CCEEEEE----eCCHHHHHHh
Confidence            8888865 4666655    4554433333

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=1e-19  Score=158.18  Aligned_cols=122  Identities=18%  Similarity=0.190  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhh-hHHHHHHHhCCCCCCchhhhHHhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i-~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      -++||+|.+||||||+-|++.|+++|++|+|++.|.|...-.        ..+.. .+.++++.+|+.+.-...|.. .+
T Consensus        40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPh-el  110 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPH-EL  110 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCc-cc
Confidence            468999999999999999999999999999999998854322        22222 388999999998876666664 45


Q ss_pred             hhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        82 ~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ++++  ++.||||++.  +|+++++|||++ ||.-.+.++. +++.++++ .|.+.+++
T Consensus       111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI  166 (268)
T COG4608         111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI  166 (268)
T ss_pred             CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE
Confidence            5554  4899999999  999999999999 9999999999 99999985 48887766

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.81  E-value=7.1e-20  Score=179.60  Aligned_cols=123  Identities=23%  Similarity=0.283  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-------HHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM   63 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-------~~~~m   63 (248)
                      .++|+|+||||||||+|+|+|+++|..|+|.++|.|.+.       +.+.| ++     +-+|+|+++       .++++
T Consensus       501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~  580 (709)
T COG2274         501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII  580 (709)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence            589999999999999999999999999999999998753       44555 22     347888886       23333


Q ss_pred             HHh---C---------------CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           64 EEL---G---------------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        64 ~~~---~---------------L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                      +..   |               ++..|      ..+++|+  +.+|||++..  +|+++|+||||+ ||..+.+.+. +-
T Consensus       581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G------~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~  651 (709)
T COG2274         581 EAAQLAGAHEFIENLPMGYDTPVGEGG------ANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QN  651 (709)
T ss_pred             HHHHHhCcHHHHHhcccccccccccCC------CCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HH
Confidence            222   1               12222      1255554  4899999999  999999999999 9999999988 66


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      +.++.+ |.|+++|
T Consensus       652 L~~~~~-~~T~I~I  664 (709)
T COG2274         652 LLQILQ-GRTVIII  664 (709)
T ss_pred             HHHHhc-CCeEEEE
Confidence            666643 5665554

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=157.45  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.++     ++|+|.++|.+...         ..+.| ++     ..++++++.    
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~  112 (253)
T PRK14261         33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR  112 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence            46899999999999999999998753     48999999866421         11222 11     125555543    


Q ss_pred             -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+.- . .......+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~-  189 (253)
T PRK14261        113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE-  189 (253)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         23344555553210 0 011123455554  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       190 ~~l~~~~~-~~tvii~  204 (253)
T PRK14261        190 DLIEDLKK-EYTVIIV  204 (253)
T ss_pred             HHHHHHhh-CceEEEE
Confidence            88888865 5666554

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.5e-19  Score=159.80  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|++++     .+|+|.++|.+...         ..+.| ++     ..++.+++..   
T Consensus        47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~  126 (274)
T PRK14265         47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR  126 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence            46899999999999999999999863     58999999876421         12223 11     1256666532   


Q ss_pred             ------------HHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        60 ------------~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                  .+.++.+++.....  .......+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++
T Consensus       127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~  203 (274)
T PRK14265        127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL  203 (274)
T ss_pred             hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence                        23344555531100  001123355543  4899999999  999999999999 9999999999 88


Q ss_pred             HHHHHhCCCeEEEEEecccccccChHHH
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++++.+ +.+++++    +|.......+
T Consensus       204 L~~~~~-~~tiii~----sH~~~~~~~~  226 (274)
T PRK14265        204 CLELKE-QYTIIMV----THNMQQASRV  226 (274)
T ss_pred             HHHHhc-CCEEEEE----eCCHHHHHHh
Confidence            888864 5666555    4555444443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=156.52  Aligned_cols=130  Identities=19%  Similarity=0.272  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|+.+  |   ++|+|.++|.++..         ..+.| ++     ..++++++..   
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~  111 (252)
T PRK14255         32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR  111 (252)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence            4689999999999999999999865  4   58999999876421         12222 11     1366665541   


Q ss_pred             --------------HHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           60 --------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        60 --------------~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                    .+.++.+++...-  ........+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-  188 (252)
T PRK14255        112 LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE-  188 (252)
T ss_pred             HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                          1223444442110  0011123455543  3899999999  999999999999 9999999998 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++.+ +.+++++
T Consensus       189 ~~l~~~~~-~~tii~v  203 (252)
T PRK14255        189 NMLLELRD-QYTIILV  203 (252)
T ss_pred             HHHHHHHh-CCEEEEE
Confidence            88888865 4666655

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.81  E-value=2.3e-19  Score=173.72  Aligned_cols=129  Identities=17%  Similarity=0.235  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||+|||||||+++|+|++ |++|+|.++|.|...       +.+.|      -.+-|++|++.          +
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei  455 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL  455 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence            358999999999999999999999 999999999987642       23333      22458888885          3


Q ss_pred             HHHHHHhCCC------CCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |+|-...   .-..+++|+  |.+|||++..  +|+++||||||+ ||..+.+.+. +.++++.
T Consensus       456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~  532 (588)
T PRK11174        456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS  532 (588)
T ss_pred             HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence            3344443332      1111000   012355554  4899999999  999999999999 9999999998 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.|+++|
T Consensus       533 -~~~TvIiI  540 (588)
T PRK11174        533 -RRQTTLMV  540 (588)
T ss_pred             -CCCEEEEE
Confidence             46676655

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.81  E-value=1.9e-19  Score=174.07  Aligned_cols=130  Identities=18%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     +-|+++++.           
T Consensus       370 ~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~  449 (582)
T PRK11176        370 KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ  449 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHH
Confidence            3589999999999999999999999999999999987532       23344 22     347777775           


Q ss_pred             HHHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++++..++.+      +|-..   ..-..+++|+  +.+|||++..  +|+++|+||||+ ||+.+...+. +.+.++
T Consensus       450 i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~  526 (582)
T PRK11176        450 IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL  526 (582)
T ss_pred             HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence            334444444321      11000   0012355554  4899999999  999999999999 9999999988 777776


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      . ++.|+++|
T Consensus       527 ~-~~~tvI~V  535 (582)
T PRK11176        527 Q-KNRTSLVI  535 (582)
T ss_pred             h-CCCEEEEE
Confidence            4 45676665

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.6e-19  Score=168.67  Aligned_cols=130  Identities=22%  Similarity=0.262  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC------CCCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF------DYPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~------~y~~~~~i~e~i~----------~   59 (248)
                      -.++|+|+||||||||++.|+|+.+|+.|+|.++|.+..+       +++      ||-..-|+||++.          +
T Consensus       348 ~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i  427 (559)
T COG4988         348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEI  427 (559)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHH
Confidence            3579999999999999999999999999999999987643       222      3433458999985          5


Q ss_pred             HHHHHHhCCCCCC----chhhhH----Hhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           60 EDVMEELGLGPNG----GLIYCM----EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        60 ~~~m~~~~L~~~~----~~~~~~----~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      .+++++.|+.+.-    +.-...    .-++++  +|+++||++..  +++++||||||+ ||.++...+. +.+.++.+
T Consensus       428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~  504 (559)
T COG4988         428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAK  504 (559)
T ss_pred             HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHh
Confidence            5666666553211    111111    113443  45999999999  999999999999 9999999988 88888865


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      + ++++++
T Consensus       505 ~-ktvl~i  511 (559)
T COG4988         505 Q-KTVLVI  511 (559)
T ss_pred             C-CeEEEE
Confidence            4 666655

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.80  E-value=1.5e-19  Score=145.17  Aligned_cols=94  Identities=19%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+++|+||||||||||+++|+|+++|++|+|.++|.    ..+.|.+.                              ++
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------lS   72 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------LS   72 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc------------------------------CC
Confidence            478999999999999999999999999999999873    22333211                              22


Q ss_pred             h--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 D--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .  .+++.||++++.  +|+++|+|||++ +|+.++..+. ++++++   +.+++++
T Consensus        73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~  123 (144)
T cd03221          73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV  123 (144)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence            2  244899999999  999999999999 9999998888 777766   3466554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.80  E-value=1.9e-19  Score=172.35  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC------CcccChhhhhh----------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY------PVAMDIRELIS----------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y------~~~~~i~e~i~----------~~   60 (248)
                      -.++|+||+|||||||++.|+|+++|++|+|.++|.|...      +.+.|      -.+-|++|++.          +.
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~  441 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW  441 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence            3689999999999999999999999999999999977542      23333      22448888876          34


Q ss_pred             HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..++.+      +|-...   .-..+++|+  |.+|||++..  +|+++||||||+ ||..+.+.+. +.++++. 
T Consensus       442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~~-  517 (529)
T TIGR02868       442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAAL-  517 (529)
T ss_pred             HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-
Confidence            5555555431      110000   002355544  4899999999  999999999999 9999999988 6666653 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      ++.|+++|
T Consensus       518 ~~~TvIiI  525 (529)
T TIGR02868       518 SGKTVVVI  525 (529)
T ss_pred             CCCEEEEE
Confidence            46677665

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.5e-19  Score=159.05  Aligned_cols=140  Identities=20%  Similarity=0.286  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL---   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~---   59 (248)
                      -+++|+||||||||||+++|+|+++     |++|+|.++|.++..         ..+.| ++     ..++++++..   
T Consensus        72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~  151 (305)
T PRK14264         72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR  151 (305)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence            4689999999999999999999986     689999999876431         12333 11     1356655542   


Q ss_pred             --------------------------HHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795           60 --------------------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        60 --------------------------~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                                                .++++.+++.+..  ........+++++  ++.||++++.  +|+++|+|||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPts  229 (305)
T PRK14264        152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPAS  229 (305)
T ss_pred             hcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcc
Confidence                                      2233444442100  0000112345543  4899999999  999999999999


Q ss_pred             -cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                       ||+.++..+. ++++++.+ +.+++++    +|.......+
T Consensus       230 gLD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~  265 (305)
T PRK14264        230 ALDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARI  265 (305)
T ss_pred             cCCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHh
Confidence             9999999998 88998865 4566544    4555433333

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4e-19  Score=154.54  Aligned_cols=130  Identities=17%  Similarity=0.268  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.++..         ..+.| ++     ..++++++.    
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~  109 (250)
T PRK14266         30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR  109 (250)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence            4789999999999999999999864     389999999976421         12232 11     124555443    


Q ss_pred             -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++...-  ........+++++  ++.||++++.  +|+++|+|||++ ||+.++..+. 
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~-  186 (250)
T PRK14266        110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE-  186 (250)
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence                         23345555653210  0001123345543  3899999999  999999999999 9999999988 


Q ss_pred             HHHHHHHhCCCeEEEE
Q 025795          121 NFVDHLKSRNFNVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v  136 (248)
                      ++++++++ +.+++++
T Consensus       187 ~~l~~~~~-~~tiii~  201 (250)
T PRK14266        187 DLIHKLKE-DYTIVIV  201 (250)
T ss_pred             HHHHHHhc-CCeEEEE
Confidence            88888854 6677655

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.80  E-value=5e-19  Score=168.00  Aligned_cols=129  Identities=20%  Similarity=0.278  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC--------CCCCC-Cc--------ccChhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY-PV--------AMDIRELI-------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~y-~~--------~~~i~e~i-------   57 (248)
                      -+++|+||||||||||+++|+|+.++ ++|+|++.|.+...        ..+.| ++        ..++++.+       
T Consensus       287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~  366 (490)
T PRK10938        287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS  366 (490)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence            47899999999999999999998775 69999999865311        12333 11        11233221       


Q ss_pred             -------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        58 -------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   .++++++.+++.+ .....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. 
T Consensus       367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-  441 (490)
T PRK10938        367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAP--FHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR-  441 (490)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCCchhhccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence                         2457788888875 33222  34566654  4899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCC-eEEEE
Q 025795          121 NFVDHLKSRNF-NVCAV  136 (248)
Q Consensus       121 ~ll~~l~~~~~-~ii~v  136 (248)
                      ++++++++++. +++++
T Consensus       442 ~~L~~l~~~~~~tviiv  458 (490)
T PRK10938        442 RFVDVLISEGETQLLFV  458 (490)
T ss_pred             HHHHHHHhcCCcEEEEE
Confidence            99999876654 46555

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.80  E-value=4.1e-19  Score=170.70  Aligned_cols=129  Identities=23%  Similarity=0.291  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-+++|++.          +
T Consensus       345 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~  424 (544)
T TIGR01842       345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI  424 (544)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999976532       12222      11337777764          1


Q ss_pred             ---------HHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           60 ---------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        60 ---------~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                               .+.++.+  |+...-+..  ...+++++  +++|||++..  +|+++|+||||+ ||..+...+. +.+++
T Consensus       425 ~~~~~~~~~~~~i~~l~~gl~t~~~~~--g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~  499 (544)
T TIGR01842       425 IEAAKLAGVHELILRLPDGYDTVIGPG--GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKA  499 (544)
T ss_pred             HHHHHHhChHHHHHhCccccccccCCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHH
Confidence                     2233333  222111110  12355554  4899999999  999999999999 9999999988 77888


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +.+.+.+++++
T Consensus       500 ~~~~~~tvi~i  510 (544)
T TIGR01842       500 LKARGITVVVI  510 (544)
T ss_pred             HhhCCCEEEEE
Confidence            75456777655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=157.56  Aligned_cols=130  Identities=19%  Similarity=0.266  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC-----------CCCCCC-Cc-----ccChhhhhh--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PV-----AMDIRELIS--   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~-----------~~~~~y-~~-----~~~i~e~i~--   58 (248)
                      -+++|+||||||||||+++|+|+.+|     ++|+|.++|.+..           ...+.| ++     ..++++++.  
T Consensus        43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~  122 (265)
T PRK14252         43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG  122 (265)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence            47899999999999999999999875     7899999875431           112333 11     126666553  


Q ss_pred             ---------------HHHHHHHhCCCCC--CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~--~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                     +.++++.+++.+.  .........++++  +++.||++++.  +|+++|+||||+ ||+.++..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l  200 (265)
T PRK14252        123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI  200 (265)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence                           1233444555320  0000111234444  34899999999  999999999999 999999998


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025795          119 LRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (248)
                      . ++++++++ +.+++++
T Consensus       201 ~-~~l~~l~~-~~tiiiv  216 (265)
T PRK14252        201 E-ELISDLKN-KVTILIV  216 (265)
T ss_pred             H-HHHHHHHh-CCEEEEE
Confidence            8 88888865 5666655

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.80  E-value=3e-19  Score=170.16  Aligned_cols=133  Identities=18%  Similarity=0.182  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CC--CCCCCCCCcccChhhhhh---------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS---------------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~--~~~~~~y~~~~~i~e~i~---------------------   58 (248)
                      -.+||||+||+|||||+|+|+|...|++|+|...+- ..  -.|..+.....++.+.+.                     
T Consensus        30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~  109 (530)
T COG0488          30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA  109 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence            368999999999999999999999999999988652 11  123333333334444332                     


Q ss_pred             -------------------------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-c
Q 025795           59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I  110 (248)
Q Consensus        59 -------------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-L  110 (248)
                                               ++.++..+|+.+. .  ..+..++++++  +.||++|..  +||+|+|||||+ |
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~--~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL  184 (530)
T COG0488         110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D--RPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL  184 (530)
T ss_pred             cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c--CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence                                     2334444555554 2  22566777764  999999999  999999999999 9


Q ss_pred             CHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025795          111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT  145 (248)
Q Consensus       111 D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~  145 (248)
                      |..+...+- +.+.+.  .| ++|+|. ||-+|+.
T Consensus       185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd  214 (530)
T COG0488         185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLD  214 (530)
T ss_pred             CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHH
Confidence            999875544 444432  35 776663 6666654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.80  E-value=3e-19  Score=170.94  Aligned_cols=130  Identities=22%  Similarity=0.249  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-|++|++.          +
T Consensus       349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i  428 (529)
T TIGR02857       349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI  428 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence            3689999999999999999999999999999999987542       12333      22458888876          3


Q ss_pred             HHHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.+      +|-...   .-..+++++  +.++||++..  +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus       429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~  505 (529)
T TIGR02857       429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA  505 (529)
T ss_pred             HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence            45555555532      110000   012355544  4899999999  999999999999 9999999998 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.++++|
T Consensus       506 -~~~t~i~i  513 (529)
T TIGR02857       506 -QGRTVLLV  513 (529)
T ss_pred             -CCCEEEEE
Confidence             46676655

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.80  E-value=3.8e-19  Score=144.25  Aligned_cols=117  Identities=23%  Similarity=0.250  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+++|+||||||||||+++|+|.+++.+|+++++|.+.....              ..++....++-+.         ++
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS   82 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS   82 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence            478999999999999999999999999999999986543210              0001111111100         33


Q ss_pred             hh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHH
Q 025795           83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK  149 (248)
Q Consensus        83 ~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~  149 (248)
                      ++  .++.++++++.  +|+++++|||++ +|..++..+. ++++++.+.+.+++++    +|...+...
T Consensus        83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~  145 (157)
T cd00267          83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAEL  145 (157)
T ss_pred             HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHH
Confidence            33  34889999999  999999999999 9999999888 8888876656666555    455443333

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=3.1e-19  Score=171.02  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCC--CCCcccChhhhhh-----------HHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEEL   66 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~--~y~~~~~i~e~i~-----------~~~~m~~~   66 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+...   -.+..  .+.+..++++++.           +.++++.+
T Consensus       346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~  425 (530)
T PRK15064        346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL  425 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence            47899999999999999999999999999999876321   11221  1333456666542           45678888


Q ss_pred             CCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795           67 GLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (248)
Q Consensus        67 ~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (248)
                      ++. +.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++   +.+++++    +|
T Consensus       426 ~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sH  493 (530)
T PRK15064        426 LFSQDDIKKS--VKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SH  493 (530)
T ss_pred             CCChhHhcCc--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eC
Confidence            884 222222  34566654  4899999999  999999999999 9999998888 777765   3466555    45


Q ss_pred             cccChHHH
Q 025795          143 FITDVTKF  150 (248)
Q Consensus       143 ~~~d~~~~  150 (248)
                      .......+
T Consensus       494 d~~~~~~~  501 (530)
T PRK15064        494 DREFVSSL  501 (530)
T ss_pred             CHHHHHHh
Confidence            55433333

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=3.2e-19  Score=171.93  Aligned_cols=135  Identities=18%  Similarity=0.084  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhhH--------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL--------------------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~~--------------------   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+.. .  ..+...+.+.+++++++..                    
T Consensus        34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~  113 (556)
T PRK11819         34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA  113 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999886321 1  1122222334566665531                    


Q ss_pred             --------------------------------HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEe
Q 025795           60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFD  105 (248)
Q Consensus        60 --------------------------------~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilD  105 (248)
                                                      .++++.+|+.. ...  ....+++++  ++.||++++.  +|+++|+|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~vlLLD  188 (556)
T PRK11819        114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA--KVTKLSGGERRRVALCRLLLE--KPDMLLLD  188 (556)
T ss_pred             cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence                                            22344555532 111  234566664  4899999999  99999999


Q ss_pred             CCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795          106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      |||+ ||+.+...+. ++++++.   .+++++    +|.......+
T Consensus       189 EPt~~LD~~~~~~l~-~~L~~~~---~tviii----sHd~~~~~~~  226 (556)
T PRK11819        189 EPTNHLDAESVAWLE-QFLHDYP---GTVVAV----THDRYFLDNV  226 (556)
T ss_pred             CCCCcCChHHHHHHH-HHHHhCC---CeEEEE----eCCHHHHHhh
Confidence            9999 9999998888 7777662   366544    4554433333

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.80  E-value=5.4e-19  Score=143.08  Aligned_cols=128  Identities=18%  Similarity=0.273  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC------CC--------------CCCCCCcccChhhhhh-----
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA--------------ENFDYPVAMDIRELIS-----   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~------~~--------------~~~~y~~~~~i~e~i~-----   58 (248)
                      .++++||+|+|||||+|.+.=+.-|.+|+..+-|...      .+              +.....|.++|-+++-     
T Consensus        30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k  109 (242)
T COG4161          30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR  109 (242)
T ss_pred             EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence            4689999999999999999999999999999977432      11              1112245566665542     


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  ..++++++.|.+..++.. +. ++++  ++++|||++++  +|++++|||||. |||+....+. +++
T Consensus       110 v~gl~~~qa~~~a~ellkrlrl~~~adr~p-lh-lsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii  184 (242)
T COG4161         110 VLGLSKDQALARAEKLLKRLRLKPYADRYP-LH-LSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII  184 (242)
T ss_pred             HhCCCHHHHHHHHHHHHHHhccccccccCc-ee-cccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence                        567788888887765442 22 3443  45999999999  999999999999 9999999999 999


Q ss_pred             HHHHhCCCeEEEE
Q 025795          124 DHLKSRNFNVCAV  136 (248)
Q Consensus       124 ~~l~~~~~~ii~v  136 (248)
                      ++|...|.+-++|
T Consensus       185 kel~~tgitqviv  197 (242)
T COG4161         185 KELAETGITQVIV  197 (242)
T ss_pred             HHHHhcCceEEEE
Confidence            9998889886555

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.79  E-value=4.9e-19  Score=171.26  Aligned_cols=130  Identities=20%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-+++|++.          +
T Consensus       367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i  446 (574)
T PRK11160        367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL  446 (574)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence            3689999999999999999999999999999999987542       22333      12447888875          4


Q ss_pred             HHHHHHhCCCC-----CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           60 EDVMEELGLGP-----NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        60 ~~~m~~~~L~~-----~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      .++++..++.+     +|-.-.   .-..+++++  +.+|||++..  +|+++|+||||+ +|..+...+. +.++++. 
T Consensus       447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~-  522 (574)
T PRK11160        447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA-  522 (574)
T ss_pred             HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence            56677777653     211100   012355544  4899999999  999999999999 9999999988 7777774 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      ++.+++++
T Consensus       523 ~~~tviii  530 (574)
T PRK11160        523 QNKTVLMI  530 (574)
T ss_pred             CCCEEEEE
Confidence            46676655

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.79  E-value=7.5e-19  Score=153.74  Aligned_cols=128  Identities=18%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~---------~~   60 (248)
                      -+++|+||||||||||+++|+|+++|.+|+|.++|.+...       ..+.|      ....++++++.         +.
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~  127 (257)
T cd03288          48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW  127 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence            4689999999999999999999999999999999876421       11222      11124444332         22


Q ss_pred             HHHHHhCCC-----------CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           61 DVMEELGLG-----------PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        61 ~~m~~~~L~-----------~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      ++++..++.           +....  ....++++  +++.||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       128 ~~l~~~~l~~~~~~~~~~l~~~~~~--~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~  202 (257)
T cd03288         128 EALEIAQLKNMVKSLPGGLDAVVTE--GGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTA  202 (257)
T ss_pred             HHHHHhCcHHHHhhcccccCcEecc--CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh
Confidence            333333332           11000  01234444  34899999999  999999999999 9999998888 888877


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      . ++.+++++
T Consensus       203 ~-~~~tiii~  211 (257)
T cd03288         203 F-ADRTVVTI  211 (257)
T ss_pred             c-CCCEEEEE
Confidence            4 46777655

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=5e-19  Score=171.54  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -.++|+|+||||||||+++|+|+++|++|+|.++|.+...       +.+.| +|     +-|+++++.         +.
T Consensus       368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~  447 (592)
T PRK10790        368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW  447 (592)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence            3589999999999999999999999999999999987542       23333 22     347888875         45


Q ss_pred             HHHHHhCCCC------CCchh---hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGLI---YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~---~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..|+..      +|-..   ..-..++++  ++.+|||++..  +|+++|+||||+ ||+.+.+.+. +.++++.+
T Consensus       448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~  524 (592)
T PRK10790        448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE  524 (592)
T ss_pred             HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence            5566555431      11000   001235554  44899999999  999999999999 9999999988 77777754


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                       +.++++|
T Consensus       525 -~~tvIiv  531 (592)
T PRK10790        525 -HTTLVVI  531 (592)
T ss_pred             -CCEEEEE
Confidence             5666555

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.79  E-value=1.2e-19  Score=171.19  Aligned_cols=142  Identities=19%  Similarity=0.250  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCCCC-----------CCC---------CCCcccChhhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENF---------DYPVAMDIRELIS   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~----~G~i~i~~~d~~~-----------~~~---------~y~~~~~i~e~i~   58 (248)
                      -++||+|.+||||||+.+++.|++++.    +|+|.++|.|...           ..+         .+.|-++|.+++.
T Consensus        36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~  115 (539)
T COG1123          36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR  115 (539)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence            478999999999999999999999887    7999999976521           111         2245567777664


Q ss_pred             -----------------HHHHHHHhCCCCCCch-hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795           59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~-~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~  117 (248)
                                       +.++++++|+.+.... .|+ ..+++++  ++.||++++.  +|++||+||||. ||+.++.+
T Consensus       116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q  192 (539)
T COG1123         116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ  192 (539)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence                             6788899999876543 355 4566765  4899999999  999999999998 99999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795          118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++ ++++++.+ .|.++++|    +|.+.=.+.+++
T Consensus       193 IL-~llk~l~~e~g~a~l~I----THDl~Vva~~aD  223 (539)
T COG1123         193 IL-DLLKDLQRELGMAVLFI----THDLGVVAELAD  223 (539)
T ss_pred             HH-HHHHHHHHHcCcEEEEE----cCCHHHHHHhcC
Confidence            99 99999984 68888776    455543333333

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.79  E-value=1.1e-18  Score=144.86  Aligned_cols=116  Identities=20%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhhHHHHHHHhCCCCC-CchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~~~~~m~~~~L~~~-~~~~~~~~   79 (248)
                      -+++|+||||||||||++++.+    .+|++.+.+..+..  +.+.|.     .+    .++++.+++++. ....  ..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~   86 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS   86 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence            4689999999999999999853    68999987664322  112221     11    578899998753 2222  23


Q ss_pred             hhhhhH--HHHHHHHHccCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           80 HLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        80 ~l~~~~--~~~La~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .++.++  ++.+|++++.  +  |+++|+|||++ +|+.++..+. +.++++.+.|.+++++
T Consensus        87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIiv  145 (176)
T cd03238          87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI  145 (176)
T ss_pred             cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            455543  4899999999  9  99999999999 9999999998 8888886678888766

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.79  E-value=2.9e-19  Score=174.23  Aligned_cols=131  Identities=20%  Similarity=0.260  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~----------   58 (248)
                      -.++|+||||||||||+++|+|..++.   +|+|.++|.+...    +.+.|       .+.+||+|++.          
T Consensus        52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~  131 (617)
T TIGR00955        52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR  131 (617)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence            468999999999999999999998874   7999999986531    12223       44678888774          


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhH----HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~----~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                               ++++++.+|+.+.......-    ..+++++  ++.||+++..  +|+++++||||+ ||..+...++ +.
T Consensus       132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~  208 (617)
T TIGR00955       132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV  208 (617)
T ss_pred             CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence                     67788889987643332221    1255543  4899999999  999999999999 9999999999 88


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      ++++++.|.+++++
T Consensus       209 L~~l~~~g~tvi~~  222 (617)
T TIGR00955       209 LKGLAQKGKTIICT  222 (617)
T ss_pred             HHHHHhCCCEEEEE
Confidence            89987778777655

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.9e-19  Score=160.40  Aligned_cols=139  Identities=17%  Similarity=0.291  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC------CcccChhhhhh----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y------~~~~~i~e~i~----   58 (248)
                      -+++|+||||||||||+++|+|+.+     |++|+|.++|.+...         ..+.|      ....++++++.    
T Consensus       109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~  188 (329)
T PRK14257        109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR  188 (329)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence            4689999999999999999999986     579999999987631         12222      12457777765    


Q ss_pred             -------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                   +.++++.+++.+...  .-.....+++++  +++|||+++.  +|+++|+||||+ ||+.+...+. 
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~-  265 (329)
T PRK14257        189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE-  265 (329)
T ss_pred             hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence                         123355666532100  001123345543  4899999999  999999999999 9999999977 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTK  149 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~  149 (248)
                      +.++.+.+ +.+++++    +|.......
T Consensus       266 ~~i~~l~~-~~Tii~i----TH~l~~i~~  289 (329)
T PRK14257        266 ELILELKK-KYSIIIV----THSMAQAQR  289 (329)
T ss_pred             HHHHHHhc-CCEEEEE----eCCHHHHHH
Confidence            88888865 5777655    455543333

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.79  E-value=5.1e-19  Score=174.49  Aligned_cols=130  Identities=22%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.| ++     +-|++|++.          +
T Consensus       492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i  571 (694)
T TIGR03375       492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI  571 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHH
Confidence            3589999999999999999999999999999999987642       23334 22     347888875          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-..   ..-..+++|+  +.+|||++..  +|+++|+||||+ ||+.+...+. +.++++.
T Consensus       572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~  648 (694)
T TIGR03375       572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWL  648 (694)
T ss_pred             HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHh
Confidence            3444444432      111000   0002355544  4899999999  999999999999 9999999998 7777775


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.|+++|
T Consensus       649 ~-~~T~iiI  656 (694)
T TIGR03375       649 A-GKTLVLV  656 (694)
T ss_pred             C-CCEEEEE
Confidence            4 5666655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.79  E-value=8.3e-20  Score=180.46  Aligned_cols=128  Identities=14%  Similarity=0.117  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.| +     .+-|++|++.          +
T Consensus       506 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i  585 (710)
T TIGR03796       506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL  585 (710)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHH
Confidence            3589999999999999999999999999999999987632       23344 1     2447888885          3


Q ss_pred             HHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.+      +|-..   ..-..+++|+  +++|||++..  +|+++||||||+ ||..+.+.+. +.+++  
T Consensus       586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~--  660 (710)
T TIGR03796       586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR--  660 (710)
T ss_pred             HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh--
Confidence            44455444421      11000   0012355554  4899999999  999999999999 9999998888 54443  


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.|+++|
T Consensus       661 -~~~T~Iii  668 (710)
T TIGR03796       661 -RGCTCIIV  668 (710)
T ss_pred             -cCCEEEEE
Confidence             46777655

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.79  E-value=6.4e-19  Score=169.74  Aligned_cols=125  Identities=18%  Similarity=0.094  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhhH--------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL--------------------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~~--------------------   59 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+.. .  ..+.....+++++++++..                    
T Consensus        32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~  111 (552)
T TIGR03719        32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA  111 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999886421 1  1122222345566666532                    


Q ss_pred             --------------------------------HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEe
Q 025795           60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFD  105 (248)
Q Consensus        60 --------------------------------~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilD  105 (248)
                                                      .++++.+|+.. ...  ....+++++  +++||++++.  +|+++|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~lLLLD  186 (552)
T TIGR03719       112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA--DVTKLSGGERRRVALCRLLLS--KPDMLLLD  186 (552)
T ss_pred             cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence                                            12233444532 111  234566664  4899999999  99999999


Q ss_pred             CCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795          106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      |||+ ||+.++..+. ++++++   +.++|+|
T Consensus       187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIii  214 (552)
T TIGR03719       187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAV  214 (552)
T ss_pred             CCCCCCChHHHHHHH-HHHHhC---CCeEEEE
Confidence            9999 9999998887 776665   2366554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.79  E-value=5.1e-19  Score=170.42  Aligned_cols=135  Identities=18%  Similarity=0.148  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--C--CCCC-CCCcccChhhhhh--------------HHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~--~~~~-~y~~~~~i~e~i~--------------~~~~m   63 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+ +.  +  .+.. .+.+..++++++.              ..+++
T Consensus       349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  427 (552)
T TIGR03719       349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV  427 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence            47899999999999999999999999999998843 21  0  1221 1334456666553              34577


Q ss_pred             HHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025795           64 EELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL  139 (248)
Q Consensus        64 ~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~  139 (248)
                      +.+++.. .....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.  + +++++   
T Consensus       428 ~~~~l~~~~~~~~--~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv---  496 (552)
T TIGR03719       428 GRFNFKGSDQQKK--VGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI---  496 (552)
T ss_pred             HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE---
Confidence            8888853 21222  24566654  4899999999  999999999999 9999999988 8888762  3 55544   


Q ss_pred             ccccccChHHH
Q 025795          140 DSQFITDVTKF  150 (248)
Q Consensus       140 d~~~~~d~~~~  150 (248)
                       +|.......+
T Consensus       497 -sHd~~~~~~~  506 (552)
T TIGR03719       497 -SHDRWFLDRI  506 (552)
T ss_pred             -eCCHHHHHHh
Confidence             4555444444

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.8e-19  Score=159.75  Aligned_cols=141  Identities=16%  Similarity=0.239  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-C----CCceEEEeccCCCC-----------CCCCC---------CcccChhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~----~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i   57 (248)
                      -++||+|.+||||||+.+++.|+++ +    .+|+|.+.|.|...           ..+.+         .|-++|.+++
T Consensus        32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi  111 (316)
T COG0444          32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI  111 (316)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence            4789999999999999999999997 3    57899999986522           11211         3344554443


Q ss_pred             h------------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795           58 S------------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (248)
Q Consensus        58 ~------------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~  114 (248)
                      .                  +.++++.+|+.+..  ...|. ..+++++  |+.||.+++.  +|++||.||||+ ||...
T Consensus       112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~  188 (316)
T COG0444         112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV  188 (316)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence            2                  45677888887642  23344 3466664  4889999999  999999999998 99999


Q ss_pred             HHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHH
Q 025795          115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       115 ~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      +.+++ ++++++++ .|.++++|    +|.+.=.+.++
T Consensus       189 QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~a  221 (316)
T COG0444         189 QAQIL-DLLKELQREKGTALILI----THDLGVVAEIA  221 (316)
T ss_pred             HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhc
Confidence            99999 99999986 58888777    45554333333

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.79  E-value=4.7e-19  Score=170.82  Aligned_cols=135  Identities=16%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----CCCCC-CCCcccChhhhhh--------------HHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~----~~~~~-~y~~~~~i~e~i~--------------~~~~m   63 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+ +.    ..+.. .+.+..++++++.              ..+++
T Consensus       351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  429 (556)
T PRK11819        351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV  429 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence            47899999999999999999999999999999843 21    11221 2334556766653              24577


Q ss_pred             HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025795           64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL  139 (248)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~  139 (248)
                      +.+++.+. ....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++..+. ++++++.  + +++++   
T Consensus       430 ~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v---  498 (556)
T PRK11819        430 GRFNFKGGDQQKK--VGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI---  498 (556)
T ss_pred             HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE---
Confidence            88888532 1222  34566664  4899999999  999999999999 9999999988 8887762  4 55444   


Q ss_pred             ccccccChHHH
Q 025795          140 DSQFITDVTKF  150 (248)
Q Consensus       140 d~~~~~d~~~~  150 (248)
                       +|.......+
T Consensus       499 -tHd~~~~~~~  508 (556)
T PRK11819        499 -SHDRWFLDRI  508 (556)
T ss_pred             -ECCHHHHHHh
Confidence             4555444443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.79  E-value=8.8e-19  Score=169.79  Aligned_cols=130  Identities=21%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~   59 (248)
                      -.++|+|+||||||||+++|+|+++|.+|+|.++|.+...       +.+.| +     .+-|++|++.          +
T Consensus       362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i  441 (588)
T PRK13657        362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM  441 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999987642       23344 1     2347888876          3


Q ss_pred             HHHHHHhCCC------CCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-...   .-..+++|  ++.+|||++..  +|+++||||||+ ||+.+...+. +.++++.
T Consensus       442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~  518 (588)
T PRK13657        442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM  518 (588)
T ss_pred             HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence            3344444432      1110000   00124444  45899999999  999999999999 9999999998 7677764


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .++++++|
T Consensus       519 -~~~tvIii  526 (588)
T PRK13657        519 -KGRTTFII  526 (588)
T ss_pred             -cCCEEEEE
Confidence             46676655

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.79  E-value=5.7e-19  Score=172.68  Aligned_cols=125  Identities=15%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCC-CCCcccChhhhhh--------------HHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~-~y~~~~~i~e~i~--------------~~~~m   63 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.+ |.+..    .+.. .+.+..++.+++.              +.+++
T Consensus       346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l  424 (635)
T PRK11147        346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL  424 (635)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence            368999999999999999999999999999988 43221    1211 2344556666553              34456


Q ss_pred             HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+++.+. ...  ....++++.  +++||++++.  +|++||+||||+ ||+.++..+. ++++++   +.++++|
T Consensus       425 ~~~~l~~~~~~~--~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v  493 (635)
T PRK11147        425 QDFLFHPKRAMT--PVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLV  493 (635)
T ss_pred             HhcCCCHHHHhC--hhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEE
Confidence            67777431 111  134566664  4899999999  999999999999 9999987777 766665   3366555

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.79  E-value=1.6e-19  Score=163.68  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCC---CcccChhhhhh------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PVAMDIRELIS------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y---~~~~~i~e~i~------   58 (248)
                      .+||+|.+|||||||-++|.+++++. |+|.+.|.+...                -.-||   .|.++|.+.|.      
T Consensus       315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh  393 (534)
T COG4172         315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH  393 (534)
T ss_pred             eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence            57999999999999999999999886 999999987642                01234   56788888775      


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  +.++|++.||.|+.-..|+.+ +++++  +.+|||++..  +|+++++||||+ ||...+.++. +++
T Consensus       394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE-FSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LL  469 (534)
T COG4172         394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-FSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLL  469 (534)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc-cCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHH
Confidence                        789999999999987777754 55554  4899999999  999999999999 9999999999 999


Q ss_pred             HHHHh-CCCeEEEE
Q 025795          124 DHLKS-RNFNVCAV  136 (248)
Q Consensus       124 ~~l~~-~~~~ii~v  136 (248)
                      ++|++ .|.+-+++
T Consensus       470 r~LQ~k~~LsYLFI  483 (534)
T COG4172         470 RDLQQKHGLSYLFI  483 (534)
T ss_pred             HHHHHHhCCeEEEE
Confidence            99975 46665554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.5e-19  Score=172.82  Aligned_cols=126  Identities=15%  Similarity=0.131  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCC--CCC--CCCCcccChhhhh----------hHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AEN--FDYPVAMDIRELI----------SLEDVMEELG   67 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~--~~~--~~y~~~~~i~e~i----------~~~~~m~~~~   67 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+ ...+  .+.  ....+..++.+.+          .+.++++.++
T Consensus       339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  418 (638)
T PRK10636        339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG  418 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence            46899999999999999999999999999999852 1111  111  0112222333332          2567888888


Q ss_pred             CCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           68 LGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        68 L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+. ....  ...++++.  +++||++++.  +|++|||||||+ ||+.++..+. ++++++  .| ++++|
T Consensus       419 l~~~~~~~~--~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~v  483 (638)
T PRK10636        419 FQGDKVTEE--TRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVV  483 (638)
T ss_pred             CChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEE
Confidence            8542 2222  34566664  4899999999  999999999999 9999999888 877776  24 66555

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.78  E-value=8.3e-19  Score=169.07  Aligned_cols=130  Identities=18%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -.++|+|+||||||||+++|+|+++|++|+|.++|.+...       +.+.|      -.+-|++|++.           
T Consensus       359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~  438 (571)
T TIGR02203       359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE  438 (571)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence            3689999999999999999999999999999999976532       23333      22457887765           


Q ss_pred             HHHHHHHhCCCC------CCch--h-hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGP------NGGL--I-YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~------~~~~--~-~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++++..|+.+      +|-.  + ..-..+++|  ++.+|||++..  +|+++++||||+ ||..+.+.+. +.++++
T Consensus       439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~  515 (571)
T TIGR02203       439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL  515 (571)
T ss_pred             HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence            344555555431      1100  0 000235554  44899999999  999999999999 9999999998 777777


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      . .++++++|
T Consensus       516 ~-~~~tiIii  524 (571)
T TIGR02203       516 M-QGRTTLVI  524 (571)
T ss_pred             h-CCCEEEEE
Confidence            4 45676655

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.78  E-value=1.2e-18  Score=154.81  Aligned_cols=130  Identities=19%  Similarity=0.142  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHhCCCCC-
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN-   71 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~~-   71 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.++|. ....+...+.+ .++++++.         +.+.++.+++.+. 
T Consensus        64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l  142 (282)
T cd03291          64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI  142 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence            468999999999999999999999999999998762 00111111122 26666543         1333444444211 


Q ss_pred             -----Cc---hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           72 -----GG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        72 -----~~---~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                           +.   .......+++++  ++.||++++.  +|+++|+|||++ ||+.++..+...+++.+. .+.+++++
T Consensus       143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiii  215 (282)
T cd03291         143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILV  215 (282)
T ss_pred             HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence                 00   000012345543  4899999999  999999999999 999999888833455664 46676655

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=170.40  Aligned_cols=129  Identities=21%  Similarity=0.289  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|.++|++|++.++|.++..           +.+.|       .+..++.|++.      
T Consensus        35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~  114 (648)
T PRK10535         35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA  114 (648)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999976431           12222       23446565543      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  ++.||++++.  +|+++|+|||+. ||+.+++.+. +++++
T Consensus       115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~  189 (648)
T PRK10535        115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ  189 (648)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence                      45667778876542222  23455543  4899999999  999999999999 9999999999 99999


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +++++.+++++
T Consensus       190 l~~~g~tiliv  200 (648)
T PRK10535        190 LRDRGHTVIIV  200 (648)
T ss_pred             HHhcCCEEEEE
Confidence            87667787665

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.78  E-value=6.6e-19  Score=155.88  Aligned_cols=129  Identities=20%  Similarity=0.201  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -+++|+||||||||||+++|+|+++ .+|+|.++|.+++.       ..+.| ++     ..++++++.         +.
T Consensus        31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~  109 (275)
T cd03289          31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW  109 (275)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence            4689999999999999999999998 78999999976532       12222 11     226666663         45


Q ss_pred             HHHHHhCCCCCCchhhh-H--------HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGPNGGLIYC-M--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~~~~~~~~-~--------~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++.+|+.+....... +        ..++.++  ++.||++++.  +|+++|+||||+ ||+.+...+. +.++++. 
T Consensus       110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~-  185 (275)
T cd03289         110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF-  185 (275)
T ss_pred             HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-
Confidence            56777777532111000 0        0144443  4899999999  999999999999 9999998888 8788764 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      .+.++++|
T Consensus       186 ~~~tii~i  193 (275)
T cd03289         186 ADCTVILS  193 (275)
T ss_pred             CCCEEEEE
Confidence            47777666

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.78  E-value=1.2e-18  Score=167.93  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhh-------hHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELI-------SLEDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i-------~~~~~   62 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| ++     +-+++++.       .+.++
T Consensus       369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~  448 (555)
T TIGR01194       369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY  448 (555)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence            4689999999999999999999999999999999987642       22333 12     12444432       25667


Q ss_pred             HHHhCCCCCCchh----hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           63 MEELGLGPNGGLI----YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        63 m~~~~L~~~~~~~----~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      ++.+++.+.-...    .....+++++  +++|||++..  +|+++|+||||+ ||+.+.+.+.+.+++.++..+.++++
T Consensus       449 ~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii  526 (555)
T TIGR01194       449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII  526 (555)
T ss_pred             HHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            8888876431110    0013465554  4899999999  999999999999 99999999884566556556778766


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      +
T Consensus       527 i  527 (555)
T TIGR01194       527 I  527 (555)
T ss_pred             E
Confidence            6

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.78  E-value=1.4e-18  Score=171.13  Aligned_cols=128  Identities=20%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~---------~~   60 (248)
                      -.++|+||||||||||+|+|+|+++|++|+|.++|.|...       +.+.| +     .+-|++|++.         +.
T Consensus       480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~  559 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW  559 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence            3689999999999999999999999999999999987643       23444 2     2347888885         34


Q ss_pred             HHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..++.+      .|-..   ..-..+++++  +.+|||++..  +|+++||||||+ ||+.+.+.+. +.++++  
T Consensus       560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~--  634 (686)
T TIGR03797       560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL--  634 (686)
T ss_pred             HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence            4555555431      11000   0012355554  4899999999  999999999999 9999998888 656655  


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                       +.|+++|
T Consensus       635 -~~T~IiI  641 (686)
T TIGR03797       635 -KVTRIVI  641 (686)
T ss_pred             -CCeEEEE
Confidence             4566555

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.78  E-value=7.6e-19  Score=177.14  Aligned_cols=157  Identities=17%  Similarity=0.251  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~------~~~i~e~i~---------   58 (248)
                      -|.|++|||||||||+++++.|..+|++|++.+.|.+...        +.++| |+      .+|.||.+.         
T Consensus       592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~  671 (885)
T KOG0059|consen  592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP  671 (885)
T ss_pred             ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999987743        44677 32      567888774         


Q ss_pred             -------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                             ++..++.++|.+.+...  ...++++.+  ..+|.++..  +|+++++|||++ +||.+++.++ ++++++++
T Consensus       672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k  746 (885)
T KOG0059|consen  672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK  746 (885)
T ss_pred             hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence                   67788889999887665  344666543  777778888  999999999999 9999999999 99999988


Q ss_pred             CCCeEEEEEecccccccChHHHHHHHHHHHHHHH-hhCCCe
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPH  168 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~-~~~~p~  168 (248)
                      +|..++    +.+|.+.+.+-.|+++.....+++ .+|.|+
T Consensus       747 ~g~aii----LTSHsMeE~EaLCtR~aImv~G~l~ciGs~q  783 (885)
T KOG0059|consen  747 NGKAII----LTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ  783 (885)
T ss_pred             cCCEEE----EEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence            766664    448999999999888766554444 335544

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.78  E-value=1.4e-18  Score=167.71  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|.+|+|.++|.+...       +.+.|      ..+-|++|++.          +
T Consensus       367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~  446 (576)
T TIGR02204       367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV  446 (576)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHH
Confidence            3589999999999999999999999999999999976532       23444      12447888776          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |+|-..   ..-..+++|  ++..+||++..  +|+++|+||||+ +|..+.+.+. +.++++.
T Consensus       447 ~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~  523 (576)
T TIGR02204       447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM  523 (576)
T ss_pred             HHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh
Confidence            3444444442      111000   001235554  44899999999  999999999999 9999998888 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.++++|
T Consensus       524 -~~~t~Iii  531 (576)
T TIGR02204       524 -KGRTTLII  531 (576)
T ss_pred             -CCCEEEEE
Confidence             46676655

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.78  E-value=1.4e-18  Score=167.97  Aligned_cols=130  Identities=18%  Similarity=0.164  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-|++|++.          +
T Consensus       342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~  421 (569)
T PRK10789        342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI  421 (569)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999976532       12223      11347888775          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-..   .....+++++  +.+|||++..  +|+++|+||||+ ||+.+...+. +.++++.
T Consensus       422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~  498 (569)
T PRK10789        422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG  498 (569)
T ss_pred             HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence            4445544442      111000   0012355544  4899999999  999999999999 9999999998 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       ++.+++++
T Consensus       499 -~~~tii~i  506 (569)
T PRK10789        499 -EGRTVIIS  506 (569)
T ss_pred             -CCCEEEEE
Confidence             46777655

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=169.65  Aligned_cols=126  Identities=14%  Similarity=0.154  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCC-C-------CCCC-c------ccCh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-N-------FDYP-V------AMDI-----------   53 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~-~-------~~y~-~------~~~i-----------   53 (248)
                      -+++|+||||||||||+|+|+|.++|++|+|.+.|...   ..+ .       +.|. +      .++.           
T Consensus        28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~  107 (638)
T PRK10636         28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG  107 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence            46899999999999999999999999999999876421   000 0       0110 0      0000           


Q ss_pred             ------hh----------hhhHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795           54 ------RE----------LISLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF  113 (248)
Q Consensus        54 ------~e----------~i~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~  113 (248)
                            ..          .-.+.++++.+|+.+ .....  ...+++++  ++.||++|+.  +|++|||||||+ ||+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~  183 (638)
T PRK10636        108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--VSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD  183 (638)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence                  00          002456778888853 22222  35566765  4899999999  999999999999 9999


Q ss_pred             hHHHHHHHHHHHHHhCCCeEEEE
Q 025795          114 THVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       114 ~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +...+. ++++++   +.++++|
T Consensus       184 ~~~~L~-~~L~~~---~~tviiv  202 (638)
T PRK10636        184 AVIWLE-KWLKSY---QGTLILI  202 (638)
T ss_pred             HHHHHH-HHHHhC---CCeEEEE
Confidence            997766 666554   4566655

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.77  E-value=2e-18  Score=167.43  Aligned_cols=130  Identities=21%  Similarity=0.226  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-+++|++.          +
T Consensus       362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~  441 (585)
T TIGR01192       362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV  441 (585)
T ss_pred             CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999876432       12222      22447787775          2


Q ss_pred             HHHHHHhCCC------CCCch---hhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGL---IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~---~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |+|-.   -.....++++  +++.|||++..  +|+++|+||||+ ||..+.+.+. +.++++.
T Consensus       442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~  518 (585)
T TIGR01192       442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR  518 (585)
T ss_pred             HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh
Confidence            2223322221      11100   0001235554  34899999999  999999999999 9999999988 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.+++++
T Consensus       519 -~~~tvI~i  526 (585)
T TIGR01192       519 -KNRTTFII  526 (585)
T ss_pred             -CCCEEEEE
Confidence             46777665

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.77  E-value=1.7e-18  Score=166.63  Aligned_cols=131  Identities=18%  Similarity=0.084  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhh---h---hHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIREL---I---SLEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~---i---~~~~~m   63 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     +-+++++   .   .+.+++
T Consensus       350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~  429 (547)
T PRK10522        350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL  429 (547)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence            4689999999999999999999999999999999987542       23333 22     2234433   1   256677


Q ss_pred             HHhCCCCCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025795           64 EELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV  136 (248)
Q Consensus        64 ~~~~L~~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v  136 (248)
                      +.++++..-....   .-..+++++  +.+|||++..  +|+++|+||||+ ||+.+...+. +.+.+ +++.+.++++|
T Consensus       430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~-~~l~~~~~~~~~tvi~i  506 (547)
T PRK10522        430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFY-QVLLPLLQEMGKTIFAI  506 (547)
T ss_pred             HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence            7777764311100   012355554  4899999999  999999999999 9999999888 55544 33347777665

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.77  E-value=2.2e-18  Score=166.41  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      -.++|+||+||||||+++.|.|+++|++|+|.++|.|...       +.++| +|     +-||++++.          +
T Consensus       356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei  435 (567)
T COG1132         356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI  435 (567)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence            3589999999999999999999999999999999987643       33333 21     347888876          2


Q ss_pred             HHHHHHhCCC------CCCchhhh---HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~~~---~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |+|-....   -..++++  ++.+|||++..  +|+++||||||+ +|..+...+. +.++++.
T Consensus       436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~l~  512 (567)
T COG1132         436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKKLL  512 (567)
T ss_pred             HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHHHh
Confidence            2233222110      21110000   1234444  44899999999  999999999999 9999999988 7777775


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       +++|+++|
T Consensus       513 -~~rT~iiI  520 (567)
T COG1132         513 -KGRTTLII  520 (567)
T ss_pred             -cCCEEEEE
Confidence             45455444

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.77  E-value=1.2e-18  Score=172.29  Aligned_cols=129  Identities=19%  Similarity=0.212  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~-----------   58 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.| +     .+-|++|++.           
T Consensus       501 ~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~  580 (708)
T TIGR01193       501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE  580 (708)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHH
Confidence            3589999999999999999999999999999999987532       23333 1     2347777765           


Q ss_pred             HHHHHHHhCCC------CCCch--h-hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLG------PNGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~------~~~~~--~-~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++++..++.      |.|-.  + ..-..+++++  +.+|||++..  +|+++||||||+ ||..+...+. +.++++
T Consensus       581 i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~  657 (708)
T TIGR01193       581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL  657 (708)
T ss_pred             HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh
Confidence            23344444432      11100  0 0012345544  4899999999  999999999999 9999999888 666665


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                        .+.|+++|
T Consensus       658 --~~~T~Iii  665 (708)
T TIGR01193       658 --QDKTIIFV  665 (708)
T ss_pred             --cCCEEEEE
Confidence              35676655

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.77  E-value=5.7e-19  Score=139.43  Aligned_cols=105  Identities=25%  Similarity=0.267  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhh---hHHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE   65 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i---~~~~~m~~   65 (248)
                      -+++|+||||||||||+++|+|..+|.+|+|.++|.+...       ..+.|       .+..+++++.   .++++++.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~   91 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK   91 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999999999999999999877643       12222       2345677664   37788888


Q ss_pred             hCCCCCCchhh--hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795           66 LGLGPNGGLIY--CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        66 ~~L~~~~~~~~--~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      +++........  ....++.+.  +++||+++..  +|+++|+||||+
T Consensus        92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~  137 (137)
T PF00005_consen   92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN  137 (137)
T ss_dssp             TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence            88765322221  114455543  4899999999  999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.77  E-value=2.2e-18  Score=170.06  Aligned_cols=130  Identities=19%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+-|++|++.          +
T Consensus       484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i  563 (694)
T TIGR01846       484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV  563 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999987642       22333      12347788775          2


Q ss_pred             HHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.+      +|-..   ..-..+++++  +.+|||++..  +|+++|+||||+ ||..+...+. +.++++.
T Consensus       564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~  640 (694)
T TIGR01846       564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC  640 (694)
T ss_pred             HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence            33344433321      11000   0012355554  4899999999  999999999999 9999999998 7777774


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.+++++
T Consensus       641 -~~~t~i~i  648 (694)
T TIGR01846       641 -RGRTVIII  648 (694)
T ss_pred             -CCCEEEEE
Confidence             46777655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=7.5e-19  Score=145.92  Aligned_cols=137  Identities=18%  Similarity=0.294  Sum_probs=103.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCCC---------------CCCCCCcccChhhhhh---------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA---------------ENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~~---------------~~~~y~~~~~i~e~i~---------   58 (248)
                      .-+||||||+||||++..|+|--+|+.|++++.| .|...               +....+.+++|+|++.         
T Consensus        33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v  112 (249)
T COG4674          33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV  112 (249)
T ss_pred             EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence            4579999999999999999999999999999998 66532               1112245778888875         


Q ss_pred             ---------------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                     ++++++..||++.....  ...++.++++||.-.+....+|++|++|||.+ +--....+.. ++
T Consensus       113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~--A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL  189 (249)
T COG4674         113 FASLFARLRAEERRRIDELLATIGLGDERDRL--AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL  189 (249)
T ss_pred             HHHhhhhcChhHHHHHHHHHHHcccchhhhhh--hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence                           78999999999887665  34577777677655444333999999999998 7666667778 89


Q ss_pred             HHHHHhCCCeEEEEEeccccccc
Q 025795          123 VDHLKSRNFNVCAVYLLDSQFIT  145 (248)
Q Consensus       123 l~~l~~~~~~ii~v~l~d~~~~~  145 (248)
                      ++.+++ +.++++| -+|..|+.
T Consensus       190 l~~la~-~hsilVV-EHDM~Fvr  210 (249)
T COG4674         190 LKSLAG-KHSILVV-EHDMGFVR  210 (249)
T ss_pred             HHHHhc-CceEEEE-eccHHHHH
Confidence            999854 5666555 46666654

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1.6e-18  Score=168.42  Aligned_cols=133  Identities=21%  Similarity=0.288  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC-----------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~---~~G~i~i~~~d~~~-----------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+.||+||+|||||||+++|+|....   .+|+|.++|.....           |.-.+.+.+||+|.+.          
T Consensus        57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~  136 (613)
T KOG0061|consen   57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS  136 (613)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence            47899999999999999999999864   68999999954322           3333456789999885          


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhH---Hhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCM---EHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~---~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                               ++++++++||..-...+..-   .-+++  +.|+.+|..+..  +|.++++||||+ ||..+...++ +++
T Consensus       137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L  213 (613)
T KOG0061|consen  137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL  213 (613)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence                     88999999987432211100   11222  334999999999  999999999999 9999999999 999


Q ss_pred             HHHHhCCCeEEEE-Ee
Q 025795          124 DHLKSRNFNVCAV-YL  138 (248)
Q Consensus       124 ~~l~~~~~~ii~v-~l  138 (248)
                      +++++.|.+||++ |-
T Consensus       214 k~lA~~grtVi~tIHQ  229 (613)
T KOG0061|consen  214 KRLARSGRTVICTIHQ  229 (613)
T ss_pred             HHHHhCCCEEEEEEeC
Confidence            9999888887754 53

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.77  E-value=2e-18  Score=168.84  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC--------CCCCCCCC-Cccc----------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM----------------------   51 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d--------~~~~~~~y-~~~~----------------------   51 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+..        +......+ .+.+                      
T Consensus        30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (635)
T PRK11147         30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE  109 (635)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999987621        00000111 0000                      


Q ss_pred             --Chhhh--------------------hhHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCC
Q 025795           52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCP  107 (248)
Q Consensus        52 --~i~e~--------------------i~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEP  107 (248)
                        +..++                    -.+.++++.+|+.++  .  ....+++++  +++||++|+.  +|++||+|||
T Consensus       110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~--~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP  183 (635)
T PRK11147        110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD--A--ALSSLSGGWLRKAALGRALVS--NPDVLLLDEP  183 (635)
T ss_pred             cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC--C--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence              00000                    024566777777532  2  234566664  4999999999  9999999999


Q ss_pred             Cc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795          108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       108 t~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      |+ ||+.+...+. ++++++   +.++++|
T Consensus       184 t~~LD~~~~~~L~-~~L~~~---~~tvliv  209 (635)
T PRK11147        184 TNHLDIETIEWLE-GFLKTF---QGSIIFI  209 (635)
T ss_pred             CCccCHHHHHHHH-HHHHhC---CCEEEEE
Confidence            99 9999998877 777766   2466555

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.76  E-value=2.3e-18  Score=170.39  Aligned_cols=128  Identities=16%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -.++|+|||||||||++++|.|+++|++|+|.++|.+...       +.+.|      ..+-|+||++.          +
T Consensus       508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i  587 (711)
T TIGR00958       508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI  587 (711)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence            3689999999999999999999999999999999977532       22333      22458888886          3


Q ss_pred             HHHHHHhCCCC------CCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGP------NGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~------~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.+      +|-...   .-..++++  ++.+|||++..  +|+++|+||||+ ||..+.+.+. + ..  .
T Consensus       588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~~--~  661 (711)
T TIGR00958       588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-SR--S  661 (711)
T ss_pred             HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-hh--c
Confidence            34455444421      110000   00234444  45899999999  999999999999 9999987777 4 21  2


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      ..++|+++|
T Consensus       662 ~~~~TvIiI  670 (711)
T TIGR00958       662 RASRTVLLI  670 (711)
T ss_pred             cCCCeEEEE
Confidence            346777665

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=6.1e-18  Score=143.56  Aligned_cols=131  Identities=21%  Similarity=0.270  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCCC------------CCCCC---cccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAAE------------NFDYP---VAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~~------------~~~y~---~~~~i~e~i~-------   58 (248)
                      .+++|+||||||||||.++|+|+-  ++++|+|.++|.|...-            .+.||   |.+++.+++.       
T Consensus        31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~  110 (251)
T COG0396          31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR  110 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence            578999999999999999999985  78999999999887430            12233   2344444443       


Q ss_pred             ------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                                  +++.++.+++.+.-..++.-+-++++  -|..|...++.  +|++.|||||-+ ||..+-+.+. +-+
T Consensus       111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i  187 (251)
T COG0396         111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI  187 (251)
T ss_pred             ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence                        56778888888732222222334433  23778888888  999999999999 9999998888 999


Q ss_pred             HHHHhCCCeEEEE
Q 025795          124 DHLKSRNFNVCAV  136 (248)
Q Consensus       124 ~~l~~~~~~ii~v  136 (248)
                      +++++.|.+++++
T Consensus       188 ~~lr~~~~~~liI  200 (251)
T COG0396         188 NALREEGRGVLII  200 (251)
T ss_pred             HHHhcCCCeEEEE
Confidence            9998888887665

>PLN03140 ABC transporter G family member; Provisional

Probab=99.76  E-value=2.7e-18  Score=179.97  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|..++  .+|+|.++|.+...    ..++|       .+.+||+|++.           
T Consensus       907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~  986 (1470)
T PLN03140        907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV  986 (1470)
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence            46899999999999999999999763  68999999976531    12223       34568887763           


Q ss_pred             --------HHHHHHHhCCCCCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                              ++++++.++|.+.......   ...+++++  ++.||++|+.  +|+++++||||+ ||..+...++ ++++
T Consensus       987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140        987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred             CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence                    4567888888754332211   12355544  4899999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025795          125 HLKSRNFNVCAV  136 (248)
Q Consensus       125 ~l~~~~~~ii~v  136 (248)
                      ++++.|.+++++
T Consensus      1064 ~l~~~g~tVI~t 1075 (1470)
T PLN03140       1064 NTVDTGRTVVCT 1075 (1470)
T ss_pred             HHHHCCCEEEEE
Confidence            998778887655

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.76  E-value=5.2e-18  Score=177.73  Aligned_cols=131  Identities=16%  Similarity=0.201  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC---CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|..+   +++|+|.++|.+...   +.++|       .+..|++|++.           
T Consensus       790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~  869 (1394)
T TIGR00956       790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV  869 (1394)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence            4689999999999999999999987   688999999977531   22333       33568888764           


Q ss_pred             --------HHHHHHHhCCCCCCchhhh--HHhhhhhH--HHHHHHHHccCCCCC-EEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNL--DDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~--~~~l~~~~--~~~La~~l~~~~~p~-~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                              ++++++.+++.+.......  ...+++++  ++.||++++.  +|+ ++++||||+ ||..+...++ ++++
T Consensus       870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~  946 (1394)
T TIGR00956       870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR  946 (1394)
T ss_pred             CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence                    3567888888754332211  01244443  4899999999  997 999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025795          125 HLKSRNFNVCAV  136 (248)
Q Consensus       125 ~l~~~~~~ii~v  136 (248)
                      +++++|.+++++
T Consensus       947 ~la~~g~tvI~t  958 (1394)
T TIGR00956       947 KLADHGQAILCT  958 (1394)
T ss_pred             HHHHcCCEEEEE
Confidence            997778887655

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.75  E-value=3.6e-18  Score=158.43  Aligned_cols=125  Identities=25%  Similarity=0.313  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cccc-----Chhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~~-----~i~e~i~-----------   58 (248)
                      -.++||||+|||||||.|.|.|..+|.+|.|.++|-|...       ++++| +|++     ||.|+|.           
T Consensus       363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI  442 (580)
T COG4618         363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV  442 (580)
T ss_pred             ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence            3689999999999999999999999999999999977643       57788 4443     7888875           


Q ss_pred             --------HHHHHHHhC------CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------~~~~m~~~~------L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                              +.|++-.+-      +|+-|      ..+++++  +..|||++..  +|.+++||||-+ ||......+. +
T Consensus       443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~  513 (580)
T COG4618         443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A  513 (580)
T ss_pred             HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence                    333333221      23333      2355554  4889999999  999999999998 9999999988 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025795          122 FVDHLKSRNFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (248)
                      .+..++++|.++++|
T Consensus       514 Ai~~~k~rG~~vvvi  528 (580)
T COG4618         514 AILAAKARGGTVVVI  528 (580)
T ss_pred             HHHHHHHcCCEEEEE
Confidence            888888888777665

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=4.8e-18  Score=171.29  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------CCC------CCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFD------YPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~-------~~~------y~~~~~i~e~i~----------~   59 (248)
                      ..++++||+||||||++++|.+++.|++|+|.++|.|...-       .++      ...+.||+|+|.          +
T Consensus       380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i  459 (1228)
T KOG0055|consen  380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI  459 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence            46899999999999999999999999999999999887541       121      222567888875          2


Q ss_pred             HHHHHHhC---------------CCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           60 EDVMEELG---------------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        60 ~~~m~~~~---------------L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                      +++.+..+               .|+.|.      .++++  +|++|||++..  +|++|||||||+ ||+.+.+.+. +
T Consensus       460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~  530 (1228)
T KOG0055|consen  460 EEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E  530 (1228)
T ss_pred             HHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence            22222111               233331      14554  45999999999  999999999999 9999998887 8


Q ss_pred             HHHHHHhCCCeEEEEEeccc
Q 025795          122 FVDHLKSRNFNVCAVYLLDS  141 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~l~d~  141 (248)
                      .+++..+...|+++.|-+++
T Consensus       531 ALd~~~~grTTivVaHRLSt  550 (1228)
T KOG0055|consen  531 ALDKASKGRTTIVVAHRLST  550 (1228)
T ss_pred             HHHHhhcCCeEEEEeeehhh
Confidence            88887543344444555444

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=1.7e-17  Score=134.98  Aligned_cols=129  Identities=15%  Similarity=0.143  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhhh------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~~---~~~i~e~i~------------   58 (248)
                      .++|+||+|||||||+|+++-++.|++|.+++.|.+...       +.+.|   .|   .-+|+|++-            
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr  110 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR  110 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence            578999999999999999999999999999999987643       22333   11   125555542            


Q ss_pred             --HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCe
Q 025795           59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFN  132 (248)
Q Consensus        59 --~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~  132 (248)
                        +.+.+++++++..--. .....++++  ++.+|+|.|..  -|++|++||||+ ||+.+.+.+- +++.++. .++..
T Consensus       111 ~aa~~llar~~l~~~~L~-k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vA  186 (223)
T COG4619         111 AAALDLLARFALPDSILT-KNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVA  186 (223)
T ss_pred             HHHHHHHHHcCCchhhhc-chhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceE
Confidence              6788889998764211 112334443  45899999988  999999999999 9999999988 8888876 45666


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      ++.|
T Consensus       187 v~Wi  190 (223)
T COG4619         187 VLWI  190 (223)
T ss_pred             EEEE
Confidence            6655

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.75  E-value=2e-17  Score=136.43  Aligned_cols=131  Identities=18%  Similarity=0.184  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCCCcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y~~~~~i~e~i~--------   58 (248)
                      -.++|||.||||||||.|+++|.++|++|+|.+++.....                .+..+.|.+.|...+.        
T Consensus        40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~  119 (267)
T COG4167          40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD  119 (267)
T ss_pred             cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence            3579999999999999999999999999999999865432                1122233333333222        


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhH-HhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~-~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                               +-+-++.+||-|..+..+.. -..+.++++++|||+..  +|+++|.||.-. ||...+.++. ++.-+|+
T Consensus       120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeLQ  196 (267)
T COG4167         120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLELQ  196 (267)
T ss_pred             CChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHHH
Confidence                     67788899998887666542 22233466999999999  999999999987 9999999999 8888887


Q ss_pred             h-CCCeEEEE
Q 025795          128 S-RNFNVCAV  136 (248)
Q Consensus       128 ~-~~~~ii~v  136 (248)
                      + .|.+-+.|
T Consensus       197 ek~GiSyiYV  206 (267)
T COG4167         197 EKQGISYIYV  206 (267)
T ss_pred             HHhCceEEEE
Confidence            5 47666544

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=6.2e-18  Score=158.02  Aligned_cols=131  Identities=22%  Similarity=0.230  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~~   60 (248)
                      -+||+|+|||||||++|+|.+++. .+|+|.++|+|...       +.++| ||     +-||..++.          +.
T Consensus       380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~  458 (591)
T KOG0057|consen  380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV  458 (591)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence            489999999999999999999999 99999999998743       34455 33     235555554          44


Q ss_pred             HHHHHhCCCC------CC-----chhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           61 DVMEELGLGP------NG-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        61 ~~m~~~~L~~------~~-----~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      ++.+++|+.+      .|     +..  ...++++  ++++++|++..  +|+++++||||+ ||..+.++++ +.+...
T Consensus       459 e~~k~a~~hd~i~~l~~GY~T~VGer--G~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~  533 (591)
T KOG0057|consen  459 EACKRAGLHDVISRLPDGYQTLVGER--GLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV  533 (591)
T ss_pred             HHHHHcCcHHHHHhccccchhhHhhc--ccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh
Confidence            4445555432      11     111  1234443  55999999999  999999999999 9999999999 666663


Q ss_pred             HhCCCeEEEE-Eeccc
Q 025795          127 KSRNFNVCAV-YLLDS  141 (248)
Q Consensus       127 ~~~~~~ii~v-~l~d~  141 (248)
                       ..++|+|+| |.+|.
T Consensus       534 -~~~rTvI~IvH~l~l  548 (591)
T KOG0057|consen  534 -MSGRTVIMIVHRLDL  548 (591)
T ss_pred             -cCCCeEEEEEecchh
Confidence             346676654 65443

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3e-17  Score=157.79  Aligned_cols=124  Identities=21%  Similarity=0.283  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~~---~~~i~e~i~-----------   58 (248)
                      -+++++||+||||||..+.|..++.|++|+|.++|.|...       +.+++   .|   .-+|+|+|.           
T Consensus       495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i  574 (716)
T KOG0058|consen  495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI  574 (716)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence            4799999999999999999999999999999999988743       22222   11   347777775           


Q ss_pred             --------HHHHHHHh------CCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------LEDVMEEL------GLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------~~~~m~~~------~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                              +.+.+..+      ..|+.|.      .++++  +|.+|||||..  +|.+|||||.|+ ||..+...+- +
T Consensus       575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~  645 (716)
T KOG0058|consen  575 EAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-E  645 (716)
T ss_pred             HHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-H
Confidence                    22222222      1334442      34554  45899999999  999999999999 9999987776 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025795          122 FVDHLKSRNFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (248)
                      .+.++.+ +.|+++|
T Consensus       646 aL~~~~~-~rTVlvI  659 (716)
T KOG0058|consen  646 ALDRLMQ-GRTVLVI  659 (716)
T ss_pred             HHHHhhc-CCeEEEE
Confidence            8887755 4677655

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.74  E-value=1.5e-17  Score=174.86  Aligned_cols=131  Identities=18%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC------------------------------------------------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~------------------------------------------------------   28 (248)
                      -.++|+||+||||||++++|.|++.|                                                      
T Consensus      1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265       1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            46899999999999999999999998                                                      


Q ss_pred             CCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------HHHHHHHhCCC------CCCchhh---
Q 025795           29 VRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------LEDVMEELGLG------PNGGLIY---   76 (248)
Q Consensus        29 ~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~~~~m~~~~L~------~~~~~~~---   76 (248)
                      ++|+|.++|.|...       +.+.|      -.+-||+|++.          ++++++..++.      |+|-.-.   
T Consensus      1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265       1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred             CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence            59999999988642       33444      22568999886          44445444432      1110000   


Q ss_pred             hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025795           77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV  136 (248)
Q Consensus        77 ~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v  136 (248)
                      .-..+++|+  |.+|||||..  +|++|||||||+ ||..+.+.+. +.+.++. ..+.|+|+|
T Consensus      1355 ~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265       1355 YGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred             CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence            002355554  5899999999  999999999999 9999998888 7777775 357777665

>PLN03073 ABC transporter F family; Provisional

Probab=99.73  E-value=8.3e-18  Score=166.04  Aligned_cols=122  Identities=17%  Similarity=0.151  Sum_probs=84.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-C----cccChhhh--------------hhHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P----VAMDIREL--------------ISLEDVM   63 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-~----~~~~i~e~--------------i~~~~~m   63 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+..    .+.| +    ..+++.+.              -.+.+++
T Consensus       536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L  611 (718)
T PLN03073        536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL  611 (718)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence            3689999999999999999999999999999875421    1111 0    01111111              1256788


Q ss_pred             HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+++.+. ....  ...+++++  +++||++++.  +|++||+||||+ ||+.+...+. +.+.+.  .+ ++++|
T Consensus       612 ~~~gl~~~~~~~~--~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIiv  680 (718)
T PLN03073        612 GSFGVTGNLALQP--MYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMV  680 (718)
T ss_pred             HHCCCChHHhcCC--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEE
Confidence            88888642 1111  24566654  4899999999  999999999999 9999987776 555443  24 66555

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.73  E-value=2.9e-17  Score=161.24  Aligned_cols=127  Identities=15%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCCCCCcccChhhhhh-----------------HHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~~y~~~~~i~e~i~-----------------~~~~   62 (248)
                      -+++|+||||||||||+++|+|+++|++|++.+.+..-   -.++ ++.+..+++|++.                 +.++
T Consensus       479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~  557 (659)
T TIGR00954       479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQR-PYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQI  557 (659)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCC-CCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence            36899999999999999999999999999988754210   0111 1211226666653                 3456


Q ss_pred             HHHhCCCCCCchhh-------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795           63 MEELGLGPNGGLIY-------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        63 m~~~~L~~~~~~~~-------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                      ++.+++.+......       ....+++++  +++|||++..  +|+++|+||||+ ||+.+...+. +.+++   .|.+
T Consensus       558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t  631 (659)
T TIGR00954       558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT  631 (659)
T ss_pred             HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence            77777754321100       012455554  4899999999  999999999999 9999988777 55544   3777


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      ++++
T Consensus       632 vI~i  635 (659)
T TIGR00954       632 LFSV  635 (659)
T ss_pred             EEEE
Confidence            7665

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.72  E-value=3.5e-17  Score=172.03  Aligned_cols=131  Identities=15%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccCCCC-------CCCCC-Cc-----ccChhhhhhH---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PV-----AMDIRELISL---------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-~~d~~~-------~~~~y-~~-----~~~i~e~i~~---------   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++ |.+...       +.++| ++     +.+++|++..         
T Consensus       412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~  491 (1466)
T PTZ00265        412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE  491 (1466)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence            4689999999999999999999999999999995 454421       23333 11     2366666643         


Q ss_pred             ----------------------------------------------------------HHHHHHhCCCC------CCch-
Q 025795           60 ----------------------------------------------------------EDVMEELGLGP------NGGL-   74 (248)
Q Consensus        60 ----------------------------------------------------------~~~m~~~~L~~------~~~~-   74 (248)
                                                                                .++++..++.+      .+-. 
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT  571 (1466)
T PTZ00265        492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET  571 (1466)
T ss_pred             hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence                                                                      22233333321      1100 


Q ss_pred             --hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           75 --IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        75 --~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                        -.....+++++  +++|||+++.  +|++|||||||+ ||+.+...+. +.++++.+ .|.++++|
T Consensus       572 ~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI  636 (1466)
T PTZ00265        572 LVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII  636 (1466)
T ss_pred             eeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence              00012355543  4899999999  999999999999 9999999988 88888864 47777665

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6e-17  Score=151.28  Aligned_cols=137  Identities=19%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE   60 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~~   60 (248)
                      -++|+|++||||||+++.+.|.+.|++|+|..+|.+++.       +.+.+ .|     +-|+|+++.          +.
T Consensus       366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~  445 (573)
T COG4987         366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW  445 (573)
T ss_pred             eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence            479999999999999999999999999999999987643       12222 11     336777775          44


Q ss_pred             HHHHHhCCCCCCc-----hhhh----HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGPNGG-----LIYC----MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~~~~-----~~~~----~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++.+||.+.-.     ....    -+.++++  .|.+|||++.+  +.+++|+||||. ||+.+.++++ +++.+-. 
T Consensus       446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~-  521 (573)
T COG4987         446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA-  521 (573)
T ss_pred             HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence            5566666542100     0000    0223343  34899999999  999999999998 9999999999 6555543 


Q ss_pred             CCCeEEEEEecccccccChH
Q 025795          129 RNFNVCAVYLLDSQFITDVT  148 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~  148 (248)
                      +|+|+++|    +|.....+
T Consensus       522 ~~kTll~v----THrL~~le  537 (573)
T COG4987         522 EGKTLLMV----THRLRGLE  537 (573)
T ss_pred             cCCeEEEE----ecccccHh
Confidence            48898877    46665444

>PLN03232 ABC transporter C family member; Provisional

Probab=99.71  E-value=4.3e-17  Score=172.07  Aligned_cols=130  Identities=20%  Similarity=0.170  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -.+||+||+|||||||+++|.|+++|++|+|.++|.|...       +.+.+ +|     +-|+|+++.         +.
T Consensus      1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232       1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence            3589999999999999999999999999999999988743       22333 22     347888875         44


Q ss_pred             HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..++.+      .|-...   .-..+++|+  +.+|||++..  +|+++||||||+ +|..+.+.+. +.+++.. 
T Consensus      1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~- 1418 (1495)
T PLN03232       1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF- 1418 (1495)
T ss_pred             HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence            5566555432      110000   002355544  4899999999  999999999999 9999988877 7777763 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      ++.|+++|
T Consensus      1419 ~~~TvI~I 1426 (1495)
T PLN03232       1419 KSCTMLVI 1426 (1495)
T ss_pred             CCCEEEEE
Confidence            46777666

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.71  E-value=4.6e-17  Score=170.69  Aligned_cols=131  Identities=14%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC----CCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l----~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|..    +|.+|+|.++|.++..      ..+.|       .+.+||+|++.       
T Consensus        88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~  167 (1394)
T TIGR00956        88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT  167 (1394)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence            468999999999999999999986    5689999999976521      11333       23567777653       


Q ss_pred             -----------------HHHHHHHhCCCCCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           59 -----------------LEDVMEELGLGPNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        59 -----------------~~~~m~~~~L~~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                                       ++++++.+||.+......   ....++++  +++.||++++.  +|+++++||||+ ||+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~  245 (1394)
T TIGR00956       168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA  245 (1394)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence                             133677788875432211   01234554  34999999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHh-CCCeEEEE
Q 025795          116 VPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus       116 ~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ..++ ++++++.+ .|.+++++
T Consensus       246 ~~i~-~~L~~la~~~g~tvii~  266 (1394)
T TIGR00956       246 LEFI-RALKTSANILDTTPLVA  266 (1394)
T ss_pred             HHHH-HHHHHHHHhcCCEEEEE
Confidence            9999 99999976 47777655

>PLN03140 ABC transporter G family member; Provisional

Probab=99.70  E-value=3.4e-17  Score=171.80  Aligned_cols=131  Identities=15%  Similarity=0.184  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CcccChhhhhhH---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL---------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~---------   59 (248)
                      -.++|+||||||||||+++|+|.++|+   +|+|.++|.+...    ..+.|       .+.+||+|++..         
T Consensus       192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~  271 (1470)
T PLN03140        192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT  271 (1470)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999998   9999999976521    22333       335677776541         


Q ss_pred             -----------------------------------------HHHHHHhCCCCCCchh---hhHHhhhhhH--HHHHHHHH
Q 025795           60 -----------------------------------------EDVMEELGLGPNGGLI---YCMEHLEDNL--DDWLAEEL   93 (248)
Q Consensus        60 -----------------------------------------~~~m~~~~L~~~~~~~---~~~~~l~~~~--~~~La~~l   93 (248)
                                                               +++++.+||..-....   .....+++++  ++.+|+++
T Consensus       272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL  351 (1470)
T PLN03140        272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI  351 (1470)
T ss_pred             cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence                                                     2356677776421100   0012355554  38999999


Q ss_pred             ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      +.  +|+++++||||+ ||..+..+++ +.++++.+ .|.+++++
T Consensus       352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis  393 (1470)
T PLN03140        352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMS  393 (1470)
T ss_pred             cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence            99  999999999999 9999999999 99999875 47777655

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=4.1e-17  Score=133.10  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----C-----------CCCCCC-Cccc------Chhhhh---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----A-----------AENFDY-PVAM------DIRELI---   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~----~-----------~~~~~y-~~~~------~i~e~i---   57 (248)
                      -|+++-||+||||||++|++.|.+.|++|+|.+.-.+-    .           .+.++| .+.+      .--|.+   
T Consensus        38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP  117 (235)
T COG4778          38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP  117 (235)
T ss_pred             cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence            58999999999999999999999999999999854321    1           123344 1111      100111   


Q ss_pred             -------------hHHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           58 -------------SLEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        58 -------------~~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                   .+.+.+.++++.+........ .+++  ++++.|||.+..  +-+++++||||+ ||..++..+. +
T Consensus       118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-e  193 (235)
T COG4778         118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-E  193 (235)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-H
Confidence                         156777888877654433332 2333  356999999999  999999999998 9999999999 9


Q ss_pred             HHHHHHhCCCeEEEEE
Q 025795          122 FVDHLKSRNFNVCAVY  137 (248)
Q Consensus       122 ll~~l~~~~~~ii~v~  137 (248)
                      ++++-++.|..++-+|
T Consensus       194 li~e~Ka~GaAlvGIF  209 (235)
T COG4778         194 LIREAKARGAALVGIF  209 (235)
T ss_pred             HHHHHHhcCceEEEee
Confidence            9999888899998885

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.70  E-value=1.1e-16  Score=152.77  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCC--CCCC-CCCcccChhhhh----------hHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENF-DYPVAMDIRELI----------SLEDVMEELGLG   69 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~--~~~~-~y~~~~~i~e~i----------~~~~~m~~~~L~   69 (248)
                      -++|+||||+|||||+|+|+|...|.+|.|.+... ..+  .|+. .+.++.++-+.+          .+...+..+++.
T Consensus       350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~  429 (530)
T COG0488         350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT  429 (530)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999987431 110  0100 111222333333          367788899998


Q ss_pred             CCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795           70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI  144 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~  144 (248)
                      +.... .....++++.+  +.||..+..  +|.+|||||||+ ||+.+...+- +.+..   ...++++|. ||-+++
T Consensus       430 ~~~~~-~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL~~---f~Gtvl~VS-HDr~Fl  499 (530)
T COG0488         430 GEDQE-KPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EALLD---FEGTVLLVS-HDRYFL  499 (530)
T ss_pred             hHHHh-CchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHHHh---CCCeEEEEe-CCHHHH
Confidence            76542 33466777764  788888888  999999999999 9999986655 44444   344676663 454444

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.69  E-value=1.4e-16  Score=168.55  Aligned_cols=130  Identities=20%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -.+||+|++|||||||+++|.|+++|++|+|.++|.|...       ..+.+ +|     +-|||+++.         +.
T Consensus      1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957      1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence            3589999999999999999999999999999999998753       23333 22     337888875         44


Q ss_pred             HHHHHhCCCC------CCch--h-hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~--~-~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..++.+      .|-.  + ..-..+++|+  +.+|||++..  +|+++||||||+ +|..+...+. +.+++.. 
T Consensus      1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~- 1468 (1522)
T TIGR00957      1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF- 1468 (1522)
T ss_pred             HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence            5566555431      1100  0 0002345544  4899999999  999999999999 9999988777 7777763 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      ++.|+++|
T Consensus      1469 ~~~TvI~I 1476 (1522)
T TIGR00957      1469 EDCTVLTI 1476 (1522)
T ss_pred             CCCEEEEE
Confidence            46777665

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.69  E-value=1.1e-16  Score=169.59  Aligned_cols=130  Identities=19%  Similarity=0.170  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -.+||+||+||||||++++|.|+++|++|+|.++|.|...       +.+.+ +|     +-|||+++.         +.
T Consensus      1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130       1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence            3589999999999999999999999999999999988753       23333 22     337888875         44


Q ss_pred             HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++..++.+      .|-...   .-..+++|+  +.+|||++..  +|++|||||||+ +|..+.+.+. +.+++.. 
T Consensus      1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130       1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred             HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence            5555554421      110000   002355544  4899999999  999999999999 9999998887 7788764 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      .+.|+++|
T Consensus      1422 ~~~TvI~I 1429 (1622)
T PLN03130       1422 KSCTMLII 1429 (1622)
T ss_pred             CCCEEEEE
Confidence            46777665

>PTZ00243 ABC transporter; Provisional

Probab=99.69  E-value=1.6e-16  Score=168.01  Aligned_cols=130  Identities=18%  Similarity=0.189  Sum_probs=95.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~   60 (248)
                      -.+||+|++|||||||+++|.|+++|++|+|.++|.|...       +.+.| +|     +-|||+++.         +.
T Consensus      1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243       1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence            3589999999999999999999999999999999988753       23333 22     348888886         45


Q ss_pred             HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      ++++..++.+      +|-...   .-..+++++  +.+|||++..  + |++|||||||+ +|..+.+.+. +.+++..
T Consensus      1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~ 1493 (1560)
T PTZ00243       1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF 1493 (1560)
T ss_pred             HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC
Confidence            6666666532      110000   002355554  3899999998  7 89999999999 9999998888 7777753


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       .+.|+|+|
T Consensus      1494 -~~~TvI~I 1501 (1560)
T PTZ00243       1494 -SAYTVITI 1501 (1560)
T ss_pred             -CCCEEEEE
Confidence             46777665

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=2.7e-16  Score=126.03  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCC----CC-CCCC-------CCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFD-------YPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~----~~-~~~~-------y~~~~~i~e~i~---------   58 (248)
                      -++-++||+|||||||+..+.|++.+.   .|++++++.+.    ++ +.++       ..|.++|.+++-         
T Consensus        29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG  108 (213)
T COG4136          29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG  108 (213)
T ss_pred             cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence            467899999999999999999999764   79999998764    22 1111       134445555442         


Q ss_pred             ------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                            +...+++.||...-..-  .+.++++++  +++-|++..  +|+.+++|||++ ||..-+.+.-+....+.+..
T Consensus       109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a  184 (213)
T COG4136         109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA  184 (213)
T ss_pred             HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence                  67889999887543222  356777765  889999999  999999999999 99999988886667777778


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |..++.|
T Consensus       185 giPtv~V  191 (213)
T COG4136         185 GIPTVQV  191 (213)
T ss_pred             CCCeEEE
Confidence            9888776

>PLN03073 ABC transporter F family; Provisional

Probab=99.67  E-value=2.5e-16  Score=155.62  Aligned_cols=127  Identities=14%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC---CCCCceEEEeccCCCCCCC---------------------CC-Cc--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAENF---------------------DY-PV--------   49 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l---~~~~G~i~i~~~d~~~~~~---------------------~y-~~--------   49 (248)
                      -.+||+||||||||||+++|+|..   .|.+|+|.+.++.+.....                     .+ .+        
T Consensus       204 e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~  283 (718)
T PLN03073        204 RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFET  283 (718)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            368999999999999999999864   5788999876654211100                     00 00        


Q ss_pred             --------------ccChhhhh-----------------hHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccC
Q 025795           50 --------------AMDIRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY   96 (248)
Q Consensus        50 --------------~~~i~e~i-----------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~   96 (248)
                                    .-.+.+.+                 .+.++++.+|+.+.. .......++++++  ++||++++. 
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~-  361 (718)
T PLN03073        284 ETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI-  361 (718)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc-
Confidence                          00000000                 133455556664221 1112345666653  899999999 


Q ss_pred             CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        97 ~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                       +|+++||||||+ ||+.+...+. ++++++   +.++++|
T Consensus       362 -~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv  397 (718)
T PLN03073        362 -EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV  397 (718)
T ss_pred             -CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence             999999999999 9999998877 776665   5676655

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.67  E-value=3.4e-16  Score=165.22  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG---   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~---   69 (248)
                      -.++|+||||||||||+++|.|.++|.+|+|.++|.- ...+. ++..+.|++|++.         ++++++..++.   
T Consensus       453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l  531 (1490)
T TIGR01271       453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI  531 (1490)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence            3689999999999999999999999999999987721 11122 2222347888775         23344333321   


Q ss_pred             ---CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 ---PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ---~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         |.+...   .....+++|+  +++|||++..  +|+++|||||++ ||+.+...+++.++..+. ++.+++++
T Consensus       532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilv  604 (1490)
T TIGR01271       532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILV  604 (1490)
T ss_pred             HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence               222110   0012355554  4899999999  999999999999 999999999955666664 46777665

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.67  E-value=7e-16  Score=139.80  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCC-CC-------cccChhhh----------hhHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIREL----------ISLEDVME   64 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~-y~-------~~~~i~e~----------i~~~~~m~   64 (248)
                      -++.++|.|||||||||+.+.|+++|++|+|.++|.+...++.. |.       .+.-..+.          -.++.+++
T Consensus       350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq  429 (546)
T COG4615         350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ  429 (546)
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence            46889999999999999999999999999999999876543321 10       00000000          01566777


Q ss_pred             HhCCCCC---CchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795           65 ELGLGPN---GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL  138 (248)
Q Consensus        65 ~~~L~~~---~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l  138 (248)
                      ++.+...   .+..++.-+++.+++  +++-.++..  +.++++|||--. -||.-++.+.+.++-.+++.|+||+.|. 
T Consensus       430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs-  506 (546)
T COG4615         430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS-  506 (546)
T ss_pred             HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence            6665432   111223345667765  555566777  999999999999 9999999999888999988999998874 


Q ss_pred             ccccccc
Q 025795          139 LDSQFIT  145 (248)
Q Consensus       139 ~d~~~~~  145 (248)
                      +|.|++.
T Consensus       507 HDd~YF~  513 (546)
T COG4615         507 HDDHYFI  513 (546)
T ss_pred             cCchhhh
Confidence            6777663

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.66  E-value=7.2e-16  Score=133.35  Aligned_cols=130  Identities=16%  Similarity=0.166  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH----------------hCCCCCCc--------eEEEeccCCC----CC------CCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----AE------NFDYP   48 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~----------------g~l~~~~G--------~i~i~~~d~~----~~------~~~y~   48 (248)
                      -+++|+||||||||||+++|+                +++.+.+|        ++.+.|.+..    .+      .++|.
T Consensus        24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~  103 (243)
T cd03272          24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK  103 (243)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence            368999999999999999998                44555555        5555553211    01      12221


Q ss_pred             -c-------ccChhhhhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHHcc--CCC
Q 025795           49 -V-------AMDIRELISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN--YLD   98 (248)
Q Consensus        49 -~-------~~~i~e~i~~~~~m~~~~L~~~~~------------------~~~~~~~l~~~~--~~~La~~l~~--~~~   98 (248)
                       .       ..+..   .+...++.+++.+...                  .......+++++  ++.||++++.  ..+
T Consensus       104 ~~~~~l~~~~~t~~---ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~  180 (243)
T cd03272         104 KDEYFLDKKNVTKN---DVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP  180 (243)
T ss_pred             CCEEEECCeEcCHH---HHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence             1       11222   2445666666654210                  001123455553  3889999962  116


Q ss_pred             CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795           99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (248)
Q Consensus        99 p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (248)
                      |+++|+|||++ +|+.+...+. +.++++.+ +.+++++|
T Consensus       181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~  218 (243)
T cd03272         181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT  218 (243)
T ss_pred             CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence            89999999999 9999999988 88888854 66666554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.65  E-value=2.1e-16  Score=137.89  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEecc-CC---C-----C--------CC---------CCCCcccChhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---A-----A--------EN---------FDYPVAMDIRE   55 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~-d~---~-----~--------~~---------~~y~~~~~i~e   55 (248)
                      -+.+|+|||||||||++++|++.+.+. .|.+.+.+. +.   .     .        ++         ....+.++|.+
T Consensus        26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r  105 (251)
T cd03273          26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR  105 (251)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence            357999999999999999999998765 345555443 10   0     0        00         00011111111


Q ss_pred             ------------------hhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHHcc--
Q 025795           56 ------------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN--   95 (248)
Q Consensus        56 ------------------~i~~~~~m~~~~L~~~~~------------------~~~~~~~l~~~~--~~~La~~l~~--   95 (248)
                                        .-.+.++++.+++..+..                  .......++.++  ++++|++++.  
T Consensus       106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~  185 (251)
T cd03273         106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL  185 (251)
T ss_pred             EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence                              113677888999873311                  001122344443  3788888862  


Q ss_pred             CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           96 YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        96 ~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+|+++++||||+ +|+.....+. ++++++. .|.+++++
T Consensus       186 ~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~i  225 (251)
T cd03273         186 FKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVV  225 (251)
T ss_pred             ccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence            11789999999999 9999999988 8888884 47766655

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=1.1e-15  Score=154.44  Aligned_cols=134  Identities=22%  Similarity=0.212  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---C---cccChhhhhh-------HHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---P---VAMDIRELIS-------LEDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~---~~~~i~e~i~-------~~~~   62 (248)
                      ..++++||+||||||.+.+|-.++.|++|.|.++|.|...       ++++.   .   .+-||||+|.       .+|+
T Consensus      1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence            4589999999999999999999999999999999988754       12222   1   2558888875       2333


Q ss_pred             HHHhCC---------CCCCchhhh---HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           63 MEELGL---------GPNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        63 m~~~~L---------~~~~~~~~~---~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      ++...+         -|+|-.-.+   --.++++  +|.+||||+..  +|++|||||.|+ ||..+.+.+- +.+++..
T Consensus      1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM 1173 (1228)
T ss_pred             HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh
Confidence            332221         122211110   0124444  45999999999  999999999999 9999987776 8888885


Q ss_pred             hCCCeEEEEEec
Q 025795          128 SRNFNVCAVYLL  139 (248)
Q Consensus       128 ~~~~~ii~v~l~  139 (248)
                      ....++++.|-+
T Consensus      1174 ~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRL 1185 (1228)
T ss_pred             cCCcEEEEecch
Confidence            433344444543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.65  E-value=7.1e-16  Score=163.56  Aligned_cols=131  Identities=16%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG---   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~---   69 (248)
                      -.++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-||||+|.         ++++++..++.   
T Consensus       644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di  723 (1622)
T PLN03130        644 SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL  723 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence            3589999999999999999999999999 8988754211111223444568998886         45555555542   


Q ss_pred             ---CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 ---PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ---~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         |.|....-   -..+++|+  |++||||+..  +|+++|||||++ ||..+.+.++++.++.+. +++|+|+|
T Consensus       724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlV  796 (1622)
T PLN03130        724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLV  796 (1622)
T ss_pred             HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEE
Confidence               22211100   12355554  4899999999  999999999999 999999888867776653 45665554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.65  E-value=9.3e-16  Score=129.45  Aligned_cols=126  Identities=12%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC---------ceEEEeccCCCC----CCCCC-CcccC----hhhhhhHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMD----IRELISLEDVMEE   65 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~---------G~i~i~~~d~~~----~~~~y-~~~~~----i~e~i~~~~~m~~   65 (248)
                      +++|+||||||||||+++|+|++++..         |++.+.|.++..    ..+.| +++.+    ....-.++++++.
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~  103 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA  103 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence            678999999999999999999986552         346555655321    12222 11111    1111235666666


Q ss_pred             hCCCCCCchhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         ......  ....+++++  ++++|++++.  ..+|+++++|||++ +|+.....+. ++++++.+ +.+++++
T Consensus       104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii  172 (197)
T cd03278         104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI  172 (197)
T ss_pred             ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence               211111  234566654  3788888752  11679999999999 9999999999 88888854 5666555

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.64  E-value=2.2e-15  Score=129.69  Aligned_cols=72  Identities=17%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             HHHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        60 ~~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                      .+.++.+++.+. ....  ...+++++  ++.||++++.  +|  +++|+||||+ +|+.++..+. ++++++++.|.++
T Consensus       118 ~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~ti  192 (226)
T cd03270         118 LGFLVDVGLGYLTLSRS--APTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTV  192 (226)
T ss_pred             HHHHHHCCCCcccccCc--cCcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence            456777888652 2222  13355543  4899999998  87  6999999999 9999999999 8888887678887


Q ss_pred             EEE
Q 025795          134 CAV  136 (248)
Q Consensus       134 i~v  136 (248)
                      +++
T Consensus       193 i~i  195 (226)
T cd03270         193 LVV  195 (226)
T ss_pred             EEE
Confidence            666

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.64  E-value=1.3e-15  Score=160.87  Aligned_cols=128  Identities=23%  Similarity=0.257  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED   61 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~~   61 (248)
                      .+||+|++|||||||+++|.|+++ .+|+|.++|.|...       +.+.| +|     .-|||+++.         +.+
T Consensus      1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271      1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence            589999999999999999999997 79999999988743       23333 11     348888885         456


Q ss_pred             HHHHhCCCCC-----CchhhhH----HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           62 VMEELGLGPN-----GGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        62 ~m~~~~L~~~-----~~~~~~~----~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                      +++..++.+.     ++.-...    ..+++|+  +.+|||++..  +|++|||||||+ +|..+...+. +.+++.. .
T Consensus      1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271      1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred             HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence            6777666321     0000000    1244444  3899999999  999999999999 9999998888 7777753 4


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      +.|+++|
T Consensus      1402 ~~TvI~I 1408 (1490)
T TIGR01271      1402 NCTVILS 1408 (1490)
T ss_pred             CCEEEEE
Confidence            6777766

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.64  E-value=1.3e-15  Score=160.82  Aligned_cols=131  Identities=15%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLG---   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~---   69 (248)
                      -.++|+||+|||||||+++|.|.++|.+|.+.......+ ...-++-.+-||||+|.         ++++++..++.   
T Consensus       644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di  723 (1495)
T PLN03232        644 SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDL  723 (1495)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence            358999999999999999999999999876543221111 01123333558888886         55566655542   


Q ss_pred             ---CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 ---PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ---~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         |.|..-..   -..+++|+  |++||||+..  +|+++|||||++ ||..+.+.+++++++.+. +++|+|+|
T Consensus       724 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv  796 (1495)
T PLN03232        724 DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV  796 (1495)
T ss_pred             HhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence               22211100   02355554  4899999999  999999999999 999999888867676653 45665554

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=9.1e-16  Score=142.64  Aligned_cols=129  Identities=20%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-------ccCCCCCCCCCCcccChhhhhh-------------HHH-HH
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS-------------LED-VM   63 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-------~~d~~~~~~~y~~~~~i~e~i~-------------~~~-~m   63 (248)
                      +|++||||+|||||+|+|+.      |.|...       |-+.....-....+..+.+++.             +.. ++
T Consensus       109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L  182 (582)
T KOG0062|consen  109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL  182 (582)
T ss_pred             cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence            68999999999999999997      222221       1111000000011112222221             222 66


Q ss_pred             HHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025795           64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD  140 (248)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d  140 (248)
                      ..+|+.+..... +...++++++  ++||||+..  +||+|+|||||+ ||..+...    +-..|+.++.|+++|. +|
T Consensus       183 ~glGFt~emq~~-pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~W----Le~yL~t~~~T~liVS-HD  254 (582)
T KOG0062|consen  183 AGLGFTPEMQLQ-PTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAW----LENYLQTWKITSLIVS-HD  254 (582)
T ss_pred             HhCCCCHHHHhc-cccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHH----HHHHHhhCCceEEEEe-cc
Confidence            678877653222 2456778754  999999999  999999999999 99977633    3344555666777663 67


Q ss_pred             cccccCh
Q 025795          141 SQFITDV  147 (248)
Q Consensus       141 ~~~~~d~  147 (248)
                      +.|+...
T Consensus       255 r~FLn~V  261 (582)
T KOG0062|consen  255 RNFLNTV  261 (582)
T ss_pred             HHHHHHH
Confidence            7776543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.62  E-value=1.8e-15  Score=160.06  Aligned_cols=130  Identities=20%  Similarity=0.240  Sum_probs=88.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEEL------   66 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~------   66 (248)
                      -.++|+||||||||||+++|.|+++|.+|+|.++|.- ...|. ++..+.|++|++.         .+++++..      
T Consensus       665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l  743 (1522)
T TIGR00957       665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL  743 (1522)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence            3689999999999999999999999999999987621 11121 2323457888875         23333332      


Q ss_pred             CCCCCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH--HHHhCCCeEEEE
Q 025795           67 GLGPNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAV  136 (248)
Q Consensus        67 ~L~~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~--~l~~~~~~ii~v  136 (248)
                      +.-|.|..-   .....+++|+  +++|||++..  +|+++|+|||++ ||+.+.+.+++.+..  .+ .++.+++++
T Consensus       744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlv  818 (1522)
T TIGR00957       744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILV  818 (1522)
T ss_pred             HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEE
Confidence            222332110   0012355554  4899999999  999999999999 999999999944432  22 246676655

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.62  E-value=2e-15  Score=159.76  Aligned_cols=128  Identities=20%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEEL------   66 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~------   66 (248)
                      -+++|+||||||||||+++|+|.++|++|+|.+.+. ....+. ++..+.+++|++.         ++++++..      
T Consensus       687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l  765 (1560)
T PTZ00243        687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL  765 (1560)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence            368999999999999999999999999999986421 000111 1222457887774         22233322      


Q ss_pred             -----CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           67 -----GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        67 -----~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                           |+....+..  ...+++++  +++|||++..  +|+++|||||++ ||+.+...+++.++.... .|.+++++
T Consensus       766 ~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlv  838 (1560)
T PTZ00243        766 AQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA  838 (1560)
T ss_pred             HHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence                 221110111  13455554  4899999999  999999999999 999998888855554432 46676655

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=9.3e-15  Score=119.87  Aligned_cols=130  Identities=16%  Similarity=0.189  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCC---Cc----------ccCh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PV----------AMDI   53 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y---~~----------~~~i   53 (248)
                      -+.+|+|.+|||||||+++|++.+.|+.|+|.+...+-..                ...++   .|          .-+|
T Consensus        33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni  112 (258)
T COG4107          33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI  112 (258)
T ss_pred             cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence            4789999999999999999999999999999997643211                01111   00          1112


Q ss_pred             hhhh-------------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795           54 RELI-------------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (248)
Q Consensus        54 ~e~i-------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~  117 (248)
                      .|..             ...++++++.+++..-.-.+ ..+++++  +..||+-+..  .|.++++||||. ||...+..
T Consensus       113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR  189 (258)
T COG4107         113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR  189 (258)
T ss_pred             chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence            2211             26789999988765422211 2355554  4889999999  999999999998 99999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEE
Q 025795          118 VLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus       118 ~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ++ ++++.|.. .+..+++|
T Consensus       190 LL-DllrgLv~~l~la~viV  208 (258)
T COG4107         190 LL-DLLRGLVRELGLAVVIV  208 (258)
T ss_pred             HH-HHHHHHHHhcCceEEEE
Confidence            99 99999875 47777666

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.61  E-value=7.7e-15  Score=124.46  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHH----hCCCCCCceEEEec----cCCCCCCCCC------------CcccChhhhhh---HH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY------------PVAMDIRELIS---LE   60 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~----g~l~~~~G~i~i~~----~d~~~~~~~y------------~~~~~i~e~i~---~~   60 (248)
                      +++|+||||||||||+++|.    |...+.+|.+....    .......+.+            ...+++.+++.   -.
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~  103 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG  103 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence            68999999999999999995    88888777554111    1110001100            01123333331   01


Q ss_pred             HHHHHhCCCCCCchhhhHHhhhhhHH--------HHHHHHHccCCCCCEEEEeCCCc-cCHHhHH-HHHHHHHHHHHhC-
Q 025795           61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR-  129 (248)
Q Consensus        61 ~~m~~~~L~~~~~~~~~~~~l~~~~~--------~~La~~l~~~~~p~~lilDEPt~-LD~~~~~-~~~~~ll~~l~~~-  129 (248)
                      ++-+.+.-.        ...++.+++        +++++++..  +|+++++|||++ ||+..+. .+. ++++++.++ 
T Consensus       104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~  172 (204)
T cd03240         104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK  172 (204)
T ss_pred             HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence            111111000        122333322        467888888  999999999999 9999998 777 888888765 


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      +.+++++
T Consensus       173 ~~~iiii  179 (204)
T cd03240         173 NFQLIVI  179 (204)
T ss_pred             CCEEEEE
Confidence            6676655

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.61  E-value=2.7e-15  Score=138.02  Aligned_cols=132  Identities=15%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC--CCCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d--~~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L   68 (248)
                      -+++++||||-|||||+++|+|.++|++|.  ..++.  ...|.+.-..+.||++.+.            -.++++-+++
T Consensus       368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l  445 (591)
T COG1245         368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL  445 (591)
T ss_pred             eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence            478999999999999999999999999997  11111  1122222233557777664            2345555555


Q ss_pred             CCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccc
Q 025795           69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQ  142 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~  142 (248)
                      .+.-.+.  ...++++  +++++|.+|..  ++|++++|||.+ ||...+..+. +.|++...+ +.+.++| .+|-.
T Consensus       446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV-dHDi~  517 (591)
T COG1245         446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV-DHDIY  517 (591)
T ss_pred             HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE-eccee
Confidence            5432222  2234443  45999999999  999999999999 9999988877 889998754 5555444 34443

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.59  E-value=4.3e-15  Score=126.60  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEec----cCCCC--CCCCC-------------CcccChhhhhhHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVN----LDPAA--ENFDY-------------PVAMDIRELISLEDVM   63 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~----~d~~~--~~~~y-------------~~~~~i~e~i~~~~~m   63 (248)
                      +++|+|||||||||++++|++. +.+..+......    .....  ..+.+             ...++..+..... .+
T Consensus        30 ~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l  108 (213)
T cd03279          30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LL  108 (213)
T ss_pred             EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hh
Confidence            7899999999999999999963 333333332210    00010  01111             0111221111100 11


Q ss_pred             HHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795           64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        64 ~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                      +..++.+.....  ...+++++  ++.+|++++..        .+|+++|+|||++ +|+.+...+. ++++++++++.+
T Consensus       109 ~~g~l~~~l~~~--~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~t  185 (213)
T cd03279         109 PQGEFDRFLARP--VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRM  185 (213)
T ss_pred             hhcchHHHhcCC--ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCE
Confidence            222222211111  12344443  38889988741        1578999999999 9999999988 888888766777


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      ++++
T Consensus       186 ii~i  189 (213)
T cd03279         186 VGVI  189 (213)
T ss_pred             EEEE
Confidence            7665

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=4.3e-15  Score=129.37  Aligned_cols=132  Identities=17%  Similarity=0.230  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-------C-----CC---------CC--------------CCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AA---------EN--------------FDYP   48 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-------~-----~~---------~~--------------~~y~   48 (248)
                      +++|+|||||||||++.+|++.+.+..|.+...+.+       .     ..         +.              ..|.
T Consensus        24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~  103 (247)
T cd03275          24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR  103 (247)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence            578999999999999999999887655555432210       0     00         00              0000


Q ss_pred             cccChhhhhhHHHHHHHhCCCCCCc--------------------hhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEE
Q 025795           49 VAMDIRELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVF  104 (248)
Q Consensus        49 ~~~~i~e~i~~~~~m~~~~L~~~~~--------------------~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lil  104 (248)
                      .+-.....-.++++++.+|+.+...                    .......+++++  ++.|+++++.  ..+|+++|+
T Consensus       104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll  183 (247)
T cd03275         104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL  183 (247)
T ss_pred             ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            0000000112578888888864311                    111123445543  3788988875  014899999


Q ss_pred             eCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795          105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      |||++ ||+..+..+. ++++++.++|.+++++
T Consensus       184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~i  215 (247)
T cd03275         184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVI  215 (247)
T ss_pred             ecccccCCHHHHHHHH-HHHHHhccCCcEEEEE
Confidence            99999 9999999988 8888887667777766

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=1e-15  Score=130.61  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=47.2

Q ss_pred             HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (248)
                      .++.+.+++.......  ...++.++  ++.+|++++.  ..+|+++++|||++ +|+.++..+. ++++++.+ +.+++
T Consensus       109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~i  184 (212)
T cd03274         109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFI  184 (212)
T ss_pred             CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEE
Confidence            3444555554322221  23344443  3788888853  11589999999999 9999999888 88888854 44444


Q ss_pred             EE
Q 025795          135 AV  136 (248)
Q Consensus       135 ~v  136 (248)
                      ++
T Consensus       185 iv  186 (212)
T cd03274         185 VI  186 (212)
T ss_pred             EE
Confidence            44

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.58  E-value=5.1e-15  Score=138.43  Aligned_cols=126  Identities=18%  Similarity=0.250  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-C--CC----CCCCCc---------ccChhhhhhHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AE----NFDYPV---------AMDIRELISLEDVMEELG   67 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~--~~----~~~y~~---------~~~i~e~i~~~~~m~~~~   67 (248)
                      -+++|||||+|||||+|+++|.+.|..|.|.-..-.. +  ++    ..+|..         .-+.++.-.+..++.++|
T Consensus       418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg  497 (614)
T KOG0927|consen  418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG  497 (614)
T ss_pred             ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence            3789999999999999999999999999886542111 1  11    111100         001233334778899999


Q ss_pred             CCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        68 L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      |.... ....+..++.+++  +.+|+.+..  +|.+|+|||||| ||..+...+. +.+.+.   ..++++|
T Consensus       498 Ltgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe~---~Ggvv~v  562 (614)
T KOG0927|consen  498 LTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINEF---PGGVVLV  562 (614)
T ss_pred             CCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhcc---CCceeee
Confidence            98553 2334667777764  788888888  999999999999 9999986655 554443   3345555

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.57  E-value=2.6e-14  Score=125.52  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             HHHHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795           59 LEDVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (248)
Q Consensus        59 ~~~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (248)
                      ..++++.+||+.. .+..  ...++++  +++.||+++..  +   |+++|+||||+ ||+.....+. ++++++.++|.
T Consensus       149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~  223 (261)
T cd03271         149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN  223 (261)
T ss_pred             HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            3456778888762 2222  2345554  44899999988  6   79999999999 9999999999 88999887788


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      +++++
T Consensus       224 tvIii  228 (261)
T cd03271         224 TVVVI  228 (261)
T ss_pred             EEEEE
Confidence            88766

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.56  E-value=4.5e-14  Score=128.49  Aligned_cols=156  Identities=18%  Similarity=0.272  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCC---------CCCcccChhhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENF---------DYPVAMDIRELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~---------~y~~~~~i~e~i   57 (248)
                      -.++++|.+|||||-..+.+.|+++.     -+|+|.+.|.|.-.           ..+         ...|-.+|..++
T Consensus        37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi  116 (534)
T COG4172          37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL  116 (534)
T ss_pred             CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence            36899999999999999999999865     36899999987622           111         113344555554


Q ss_pred             h-----------------HHHHHHHhCCCCCCchh--hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           58 S-----------------LEDVMEELGLGPNGGLI--YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        58 ~-----------------~~~~m~~~~L~~~~~~~--~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                      .                 +.++++.+|+..-..+.  |+ ..+++++  ++.||.|++.  +|++||.||||. ||...+
T Consensus       117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP-HeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQ  193 (534)
T COG4172         117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQ  193 (534)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-cccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhH
Confidence            3                 56788888886543332  33 3455654  4899999999  999999999998 999999


Q ss_pred             HHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccch
Q 025795          116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (248)
Q Consensus       116 ~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~~  181 (248)
                      .+++ +++++|++ .|+.++++    +|.+.=..+|.+               .|.|+.+.+.++..
T Consensus       194 aQIL-~Ll~~Lq~~~gMa~lfI----THDL~iVr~~AD---------------rV~VM~~G~ivE~~  240 (534)
T COG4172         194 AQIL-DLLKELQAELGMAILFI----THDLGIVRKFAD---------------RVYVMQHGEIVETG  240 (534)
T ss_pred             HHHH-HHHHHHHHHhCcEEEEE----eccHHHHHHhhh---------------hEEEEeccEEeecC
Confidence            9999 99999985 58888776    355443333333               34677777766643

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=3.4e-15  Score=151.21  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      ..++++|++|||||||+++|+|-..  ..+|+|.++|.....    +..+|       .+.+||||.+.           
T Consensus       818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v  897 (1391)
T KOG0065|consen  818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV  897 (1391)
T ss_pred             ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence            4589999999999999999999743  346899999976542    23344       24678888775           


Q ss_pred             --------HHHHHHHhCCCCCCchhhhH--HhhhhhHH--HHHHHHHccCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~--~~l~~~~~--~~La~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                              ++++|+.++|++....+...  .-++..+|  +.|+-.|+.  +| .+|++||||+ ||..+.-.++ ++++
T Consensus       898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr  974 (1391)
T KOG0065|consen  898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR  974 (1391)
T ss_pred             CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence                    89999999998654333211  00122222  667777778  99 8999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE-Eeccc
Q 025795          125 HLKSRNFNVCAV-YLLDS  141 (248)
Q Consensus       125 ~l~~~~~~ii~v-~l~d~  141 (248)
                      ++...|.+|+++ |--++
T Consensus       975 kla~tGqtIlCTIHQPS~  992 (1391)
T KOG0065|consen  975 KLADTGQTILCTIHQPSI  992 (1391)
T ss_pred             HHHhcCCeEEEEecCCcH
Confidence            999889987764 53333

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.54  E-value=1.9e-14  Score=118.10  Aligned_cols=135  Identities=19%  Similarity=0.272  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----------   58 (248)
                      .+.-+|||||+|||||+..++|+++ -+|+|.+.|.+...       ++-.|       +..+.|..+++          
T Consensus        26 e~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~  104 (248)
T COG4138          26 EILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE  104 (248)
T ss_pred             eEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHH
Confidence            3556899999999999999999974 58999999987632       00011       11233444443          


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCC---C--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYL---D--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~---~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                       +.++...+++++...+.  .+.++++  +++.+|....+..   +  .+++++|||-+ ||......+- +++.++.+.
T Consensus       105 ~i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~  181 (248)
T COG4138         105 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQ  181 (248)
T ss_pred             HHHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhC
Confidence             67778888888775554  3455554  3466665554431   2  36999999999 9998876666 999999989


Q ss_pred             CCeEEEEEeccccccc
Q 025795          130 NFNVCAVYLLDSQFIT  145 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~  145 (248)
                      |.+||+.    +|.+.
T Consensus       182 G~~vims----~HDLN  193 (248)
T COG4138         182 GLAIVMS----SHDLN  193 (248)
T ss_pred             CcEEEEe----ccchh
Confidence            9998654    45554

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.54  E-value=4.9e-14  Score=130.78  Aligned_cols=135  Identities=17%  Similarity=0.194  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      ..++++||+|+||||.+|++..++...+|.|.++|+|..+       ..++. |+     +-||-.+|.          +
T Consensus       565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev  644 (790)
T KOG0056|consen  565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV  644 (790)
T ss_pred             cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence            4689999999999999999999999999999999999743       22222 11     112222222          1


Q ss_pred             HHHHHH-------hCC--------CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           60 EDVMEE-------LGL--------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        60 ~~~m~~-------~~L--------~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                      .++.+.       +++        |+.| ++   -...+++++++||++..  .|.++++||.|+ ||..+.+.+. ..+
T Consensus       645 yaAAkAA~IHdrIl~fPegY~t~VGERG-Lk---LSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL  717 (790)
T KOG0056|consen  645 YAAAKAAQIHDRILQFPEGYNTRVGERG-LK---LSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AAL  717 (790)
T ss_pred             HHHHHHhhHHHHHhcCchhhhhhhhhcc-cc---cCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHH
Confidence            111111       111        2222 11   01223467999999999  999999999999 9999999988 888


Q ss_pred             HHHHhCCCeEEEEEecccccc
Q 025795          124 DHLKSRNFNVCAVYLLDSQFI  144 (248)
Q Consensus       124 ~~l~~~~~~ii~v~l~d~~~~  144 (248)
                      .++.+...++++.|-+++..-
T Consensus       718 ~rlca~RTtIVvAHRLSTivn  738 (790)
T KOG0056|consen  718 ARLCANRTTIVVAHRLSTIVN  738 (790)
T ss_pred             HHHhcCCceEEEeeeehheec
Confidence            888776677777776554433

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.53  E-value=4.6e-14  Score=129.98  Aligned_cols=126  Identities=22%  Similarity=0.244  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------------------CCCCCCc---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------------------ENFDYPV---   49 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------------------~~~~y~~---   49 (248)
                      .++||+||||-||||-+|+|+|.+.|.=|+..   -+|..                              |.+.+-|   
T Consensus       101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~  177 (591)
T COG1245         101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV  177 (591)
T ss_pred             cEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence            58999999999999999999999999877531   11211                              1111111   


Q ss_pred             ccChhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        50 ~~~i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                      .=++++.+.       .+++++.++|.....+-  .+.++++  ++++||.++..  ++++++||||++ ||...+-.+.
T Consensus       178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a  253 (591)
T COG1245         178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA  253 (591)
T ss_pred             cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence            114555554       78899999998764443  3445554  46899999999  999999999999 9999999999


Q ss_pred             HHHHHHHHhCCCeEEEE
Q 025795          120 RNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       120 ~~ll~~l~~~~~~ii~v  136 (248)
                       +++++|.+.++.+++|
T Consensus       254 -r~Irel~~~~k~ViVV  269 (591)
T COG1245         254 -RVIRELAEDGKYVIVV  269 (591)
T ss_pred             -HHHHHHhccCCeEEEE
Confidence             9999998777888777

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.51  E-value=4.5e-14  Score=119.36  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|+||||||||||+|.++|.... ..|. .+......-+.....+.++++|.+..       ++...      .... 
T Consensus        27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------~~e~-   91 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------YAEL-   91 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecCccCcccceEEEeccchhcccc-------ccChH------HHHH-
Confidence            6789999999999999999986531 1222 11111100010001223344443321       11111      0111 


Q ss_pred             hhHHHHHHHHHccCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+.    ...+....  +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus        92 ~~~----~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv  144 (199)
T cd03283          92 RRL----KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS  144 (199)
T ss_pred             HHH----HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            122    22222222  899999999999 999998877646788887667776555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.48  E-value=8.6e-14  Score=117.46  Aligned_cols=106  Identities=12%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH--------hCCCCCCceEEEeccCCCCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCch
Q 025795            4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL   74 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~--------g~l~~~~G~i~i~~~d~~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~   74 (248)
                      +++|+||||||||||++.+.        |..-|....+          .++| .+.++            .++.....  
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~------------~lg~~~~l--   85 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA------------DIGDEQSI--   85 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE------------ecCchhhh--
Confidence            58999999999999999998        5443322111          1232 11111            11111000  


Q ss_pred             hhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        75 ~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ...+..++.+++  ..++++ +.  +|+++++|||+. +|+..+..+...+++.+.+.+.+++++
T Consensus        86 ~~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~  147 (200)
T cd03280          86 EQSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT  147 (200)
T ss_pred             hcCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            000123444442  344444 34  899999999999 999999988756788887667776555

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.9e-13  Score=124.84  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      ..++++||+|+||||+.+.+..++.+.+|.|.++|+|...       ..++. |+     +-++..++.          +
T Consensus       290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev  369 (497)
T COG5265         290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV  369 (497)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence            3589999999999999999999999999999999988632       11111 11     112222222          1


Q ss_pred             HHHHHH------hCCCCCCc-----hhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEE------LGLGPNGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~------~~L~~~~~-----~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      ..+.+.      ..-.|.|-     .+.-.-+..+++++++||.+..  +|++++|||.|+ ||..+.+.+. .-+++..
T Consensus       370 ~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~  446 (497)
T COG5265         370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVS  446 (497)
T ss_pred             HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh
Confidence            111111      12223221     1111112334577999999999  999999999999 9999998888 7788876


Q ss_pred             hCCCeEEEEEecc
Q 025795          128 SRNFNVCAVYLLD  140 (248)
Q Consensus       128 ~~~~~ii~v~l~d  140 (248)
                      +...++++.|-++
T Consensus       447 ~~rttlviahrls  459 (497)
T COG5265         447 AGRTTLVIAHRLS  459 (497)
T ss_pred             CCCeEEEEeehhh
Confidence            5445555556443

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=3.9e-13  Score=138.56  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP---   70 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~---   70 (248)
                      ..++|+||-|||||+|+.+|.|.++..+|++.+.|.-.-....||-++-||||+|-         ++++++...|.+   
T Consensus       548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle  627 (1381)
T KOG0054|consen  548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE  627 (1381)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence            45899999999999999999999999999999998622122334555779999985         677777666543   


Q ss_pred             ---CCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ---~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         .|+.-.-   --.+++|+  |+.||||+.+  ++|+++||.|.+ +|....+.++++.++.+-+ ++|+|.|
T Consensus       628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV  699 (1381)
T KOG0054|consen  628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV  699 (1381)
T ss_pred             hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence               2221100   01245554  4899999999  999999999999 9999999999888866644 4555544

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.45  E-value=1.2e-12  Score=110.50  Aligned_cols=117  Identities=10%  Similarity=0.057  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC-----ce----EEEeccCCCC-----CCCCCCc-ccChhhhhhHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL   68 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-----G~----i~i~~~d~~~-----~~~~y~~-~~~i~e~i~~~~~m~~~~L   68 (248)
                      +.+|+|||||||||++.+|...+....     |.    +.-.|.+.+.     ++-...+ .....+.-.++++++.   
T Consensus        23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---   99 (198)
T cd03276          23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS---   99 (198)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence            468999999999999999985432221     10    0000000000     0000000 0111112235666665   


Q ss_pred             CCCCchhhhHHhhhhhHH--HHHHHHH----ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~--~~La~~l----~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ......  ....++.+++  +.+++++    +.  +|+++|+|||++ +|+..+..+. ++++++.+
T Consensus       100 ~~~~~~--~~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~  161 (198)
T cd03276         100 NKAAVR--DVKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAK  161 (198)
T ss_pred             ccccCC--cccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHh
Confidence            221111  1234555543  7888888    46  999999999999 9999999998 77777654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.45  E-value=7.4e-13  Score=126.90  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C-CCCCCCCCcccChhhhhh------------HHHHHHHhCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP   70 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~-~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L~~   70 (248)
                      +.|.||||||||||+|+|+|+-+--+|+|..-.-. . --..-||.|.-+.||.+.            +.+++.++||++
T Consensus       422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~  501 (604)
T COG4178         422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD  501 (604)
T ss_pred             EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence            57999999999999999999998888988765110 0 002235544446666653            778888999886


Q ss_pred             CCchhh------hHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           71 NGGLIY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ~~~~~~------~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ...+..      ..-...+++++++||.+.+  +|+++++||-|+ ||..+...+. +++++-. .+.++|.|
T Consensus       502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV  570 (604)
T COG4178         502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV  570 (604)
T ss_pred             HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence            432211      1111223466999999999  999999999999 9999998888 5554421 46777766

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.44  E-value=1.7e-13  Score=141.12  Aligned_cols=129  Identities=18%  Similarity=0.201  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC---CCCc---ccChhhhhh---------HHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF---DYPV---AMDIRELIS---------LED   61 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~---~y~~---~~~i~e~i~---------~~~   61 (248)
                      -+||+|..|||||||.++|-.+..|.+|+|.++|.|...       ..+   |-.|   .=|+|.++.         +-+
T Consensus      1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence            489999999999999999999999999999999998754       111   2111   125555553         334


Q ss_pred             HHHHhCCCC------CC--chh-hhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           62 VMEELGLGP------NG--GLI-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        62 ~m~~~~L~~------~~--~~~-~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                      ++++.+|.+      .+  ..+ ..-+.++-|+|  +.||||+..  +.+++++||.|+ +|+.+-.-+. +.|++-= +
T Consensus      1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred             HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence            444443321      00  000 00022333343  899999999  999999999998 9999976555 6666532 4


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      +.|++.+
T Consensus      1324 dcTVltI 1330 (1381)
T KOG0054|consen 1324 DCTVLTI 1330 (1381)
T ss_pred             CCeEEEE
Confidence            6777765

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.2e-12  Score=123.24  Aligned_cols=142  Identities=16%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------   58 (248)
                      -++||-|--|||+|=++++|.|.-++.+|+|.++|.....        ..+.|          .++.+|+++++      
T Consensus       286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~  365 (500)
T COG1129         286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR  365 (500)
T ss_pred             cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence            4789999999999999999999999999999999975432        12333          23556777765      


Q ss_pred             ---------------HHHHHHHhCCCCCCchhhhHHhhhh-h-HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795           59 ---------------LEDVMEELGLGPNGGLIYCMEHLED-N-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR  120 (248)
Q Consensus        59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~-~-~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~  120 (248)
                                     ++++.+.+++........ ...+++ | +++.||+.|..  +|++||+||||. +|.-++.++. 
T Consensus       366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy-  441 (500)
T COG1129         366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY-  441 (500)
T ss_pred             hccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence                           344455555533222111 233444 3 45899999999  999999999999 9999999999 


Q ss_pred             HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++++++.++|.+++++    |..+.+....|+
T Consensus       442 ~li~~lA~~G~ail~i----SSElpEll~~~D  469 (500)
T COG1129         442 RLIRELAAEGKAILMI----SSELPELLGLSD  469 (500)
T ss_pred             HHHHHHHHCCCEEEEE----eCChHHHHhhCC
Confidence            9999999999999877    344444443333

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=9.7e-13  Score=120.99  Aligned_cols=126  Identities=20%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec------cCC-CCCCCCCCcccChhhhh---------hHHHHHHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDP-AAENFDYPVAMDIRELI---------SLEDVMEE   65 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~------~d~-~~~~~~y~~~~~i~e~i---------~~~~~m~~   65 (248)
                      -.-++|+||||.|||||++.|.|-+.|..|+..-+-      .|- +++.+.-  .-+.-+++         .++..+..
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~--Eetp~EyLqr~FNlpyq~ARK~LG~  690 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG--EETPVEYLQRKFNLPYQEARKQLGT  690 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc--ccCHHHHHHHhcCCChHHHHHHhhh
Confidence            345899999999999999999999999998754321      110 0011100  00111211         25556667


Q ss_pred             hCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +||......+. +..+++++.  +++|..-..  .|++|||||||+ ||+.+...+. +.|++..  | .+|+|
T Consensus       691 fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney~--G-gVi~V  757 (807)
T KOG0066|consen  691 FGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEYN--G-GVIMV  757 (807)
T ss_pred             hhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhcc--C-cEEEE
Confidence            77765543332 334666653  777765556  999999999999 9999987777 6666652  3 45555

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.38  E-value=3.8e-13  Score=112.31  Aligned_cols=114  Identities=13%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795            5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~   83 (248)
                      ++|.||||||||||+|.+. ..+.+..|.....    ..-.+++           +++++..++........  ...++.
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----~~~~~~~-----------~d~il~~~~~~d~~~~~--~s~fs~   64 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----ESAELPV-----------FDRIFTRIGASDSLAQG--LSTFMV   64 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----hheEecc-----------cceEEEEeCCCCchhcc--ccHHHH
Confidence            6799999999999999998 3333344432111    0111222           11122223332221111  223445


Q ss_pred             hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        84 ~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ++ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus        65 ~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~  118 (185)
T smart00534       65 EM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA  118 (185)
T ss_pred             HH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            55 44555555444899999999999 99998888776788888663 6665443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.38  E-value=3.1e-12  Score=119.93  Aligned_cols=117  Identities=21%  Similarity=0.315  Sum_probs=68.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc----CCCC----C-----------CCCC-----C---cc------c
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA----E-----------NFDY-----P---VA------M   51 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~----d~~~----~-----------~~~y-----~---~~------~   51 (248)
                      +||+|||||||||++++++|-..|..-++-+--+    .|..    +           .+.|     .   .+      .
T Consensus       104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~  183 (614)
T KOG0927|consen  104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD  183 (614)
T ss_pred             EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence            6999999999999999999988876544333111    1100    0           0000     0   00      0


Q ss_pred             Chhhh--------hh--HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           52 DIREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        52 ~i~e~--------i~--~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                      ++.+.        +.  +..+|..+|..+.-..... ..+++|+  |.+||++|..  +|++|++||||+ ||+.+..-+
T Consensus       184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL  260 (614)
T KOG0927|consen  184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-KDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL  260 (614)
T ss_pred             HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-hccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence            00000        00  3334444444433322222 2355554  4999999999  999999999999 999987544


Q ss_pred             HHHHHHH
Q 025795          119 LRNFVDH  125 (248)
Q Consensus       119 ~~~ll~~  125 (248)
                      - +.+.+
T Consensus       261 e-e~L~k  266 (614)
T KOG0927|consen  261 E-EYLAK  266 (614)
T ss_pred             H-HHHHh
Confidence            3 44443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.37  E-value=6.9e-13  Score=112.06  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-CCCCceEEEeccCCC-CCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l-~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +++|+||||||||||++++++.. .+..|...     |+ ...+++..           .++..++.......  .+..+
T Consensus        31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-----~~~~~~i~~~d-----------qi~~~~~~~d~i~~--~~s~~   92 (202)
T cd03243          31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-----PAESASIPLVD-----------RIFTRIGAEDSISD--GRSTF   92 (202)
T ss_pred             EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-----cccccccCCcC-----------EEEEEecCcccccC--CceeH
Confidence            68999999999999999999532 22333211     11 11222211           00011111100000  01122


Q ss_pred             hhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..++ +...+.+...  +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus        93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~  147 (202)
T cd03243          93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA  147 (202)
T ss_pred             HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            2233 1222233345  899999999999 999988887756777776667776655

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.30  E-value=1.6e-11  Score=103.24  Aligned_cols=134  Identities=17%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-----------CcccChhhhhhHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-----------PVAMDIRELISLEDVMEEL   66 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-----------~~~~~i~e~i~~~~~m~~~   66 (248)
                      ..++|.||||||||+|+++|-.-...|.|.+.|.++-.       ..+.|           .-++.+.-.+++++.+.-.
T Consensus        43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV  122 (291)
T KOG2355|consen   43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV  122 (291)
T ss_pred             EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence            46899999999999999999777777999999988733       11122           0011111223333333322


Q ss_pred             CCC-CC----------CchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCC
Q 025795           67 GLG-PN----------GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNF  131 (248)
Q Consensus        67 ~L~-~~----------~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~  131 (248)
                      +-. |.          -.....|...+.+++  +.|+..|..  .-+++++||-|- ||..++..++ +++++-. ++|.
T Consensus       123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~Rga  199 (291)
T KOG2355|consen  123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGA  199 (291)
T ss_pred             cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCc
Confidence            211 10          011233556666654  788888877  679999999998 9999999999 8777765 4688


Q ss_pred             eEEE-EEeccc
Q 025795          132 NVCA-VYLLDS  141 (248)
Q Consensus       132 ~ii~-v~l~d~  141 (248)
                      +|+. +|++|.
T Consensus       200 tIVYATHIFDG  210 (291)
T KOG2355|consen  200 TIVYATHIFDG  210 (291)
T ss_pred             EEEEEeeeccc
Confidence            8764 466664

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.3e-11  Score=115.27  Aligned_cols=121  Identities=20%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCc-------ccCh--hhhh----------hHHHHHHH
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-------AMDI--RELI----------SLEDVMEE   65 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~-------~~~i--~e~i----------~~~~~m~~   65 (248)
                      ++++|+||.||||+++++.|-++|..|.+.+...    ..+.|..       +..+  -+..          .++.-+..
T Consensus       393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~  468 (582)
T KOG0062|consen  393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS  468 (582)
T ss_pred             hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence            5789999999999999999999999998877642    2222311       0111  0111          15667778


Q ss_pred             hCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        66 ~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +|+....+... +..+++++.  +++|.....  +|.+|+|||||+ ||..+...+.    +.++..+..||+|
T Consensus       469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~V  535 (582)
T KOG0062|consen  469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLV  535 (582)
T ss_pred             cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEE
Confidence            88877655544 566888765  788887778  999999999999 9998875555    4455444456666

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.29  E-value=1.5e-11  Score=100.54  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|+|||||||||+++.+....-...|..... .+.   ..++ .+...+.    .  +....+             ++
T Consensus        23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~-------------lS   79 (162)
T cd03227          23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ-------------LS   79 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence            678999999999999999876655444433331 110   0111 1111100    0  111111             22


Q ss_pred             hh--HHHHHHHHHccCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DN--LDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~--~~~~La~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+  .+..+++++....  +|+++|+|||+. +|+.....+. +.+.++.+++.+++++
T Consensus        80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~  137 (162)
T cd03227          80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI  137 (162)
T ss_pred             ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            22  2267788886522  689999999999 9999999988 6666654446666544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.26  E-value=1.2e-11  Score=105.05  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|+|||||||||+++++++..--  +++   |.- |+.     .+.+++.     +.++..++...+....  ...++
T Consensus        31 ~~~l~G~n~~GKstll~~i~~~~~l--a~~---G~~vpa~-----~~~l~~~-----d~I~~~~~~~d~~~~~--~S~fs   93 (204)
T cd03282          31 FHIITGPNMSGKSTYLKQIALLAIM--AQI---GCFVPAE-----YATLPIF-----NRLLSRLSNDDSMERN--LSTFA   93 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH--HHc---CCCcchh-----hcCccCh-----hheeEecCCccccchh--hhHHH
Confidence            5899999999999999999876411  000   111 111     1122222     2344455554432222  23444


Q ss_pred             hhHH-HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~~~-~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+++ ...+..++.  +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus        94 ~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~  147 (204)
T cd03282          94 SEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA  147 (204)
T ss_pred             HHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            5542 222223345  899999999998 999877777657888887777776554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.25  E-value=1.8e-11  Score=103.42  Aligned_cols=140  Identities=16%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCC-----CC------CCCCC---------CcccChh-hhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDP-----AA------ENFDY---------PVAMDIR-ELI   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~----~G~i~i~~~d~-----~~------~~~~y---------~~~~~i~-e~i   57 (248)
                      -+-|++|.+|||||-..|.|+|..+..    .-+..+++.|.     ..      +++..         .|.-+|. +.+
T Consensus        34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI  113 (330)
T COG4170          34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI  113 (330)
T ss_pred             eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence            467899999999999999999987642    22333444332     11      11111         1111111 111


Q ss_pred             h---------------------HHHHHHHhCCCCCCchhhhHHhhhh------hHHHHHHHHHccCCCCCEEEEeCCCc-
Q 025795           58 S---------------------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-  109 (248)
Q Consensus        58 ~---------------------~~~~m~~~~L~~~~~~~~~~~~l~~------~~~~~La~~l~~~~~p~~lilDEPt~-  109 (248)
                      .                     +-+++.++|+.+..+..   ..+..      .+++.||.|++.  +|.++|.||||+ 
T Consensus       114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM---~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~  188 (330)
T COG4170         114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM---RSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNS  188 (330)
T ss_pred             hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH---HhCcchhccCcceeeeeehhhcc--CCceEeccCCCcc
Confidence            1                     55677788887665443   22222      244889999999  999999999999 


Q ss_pred             cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795          110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       110 LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +|+.++.+++ +++.++.+. |.+++.+    +|.+...+++++
T Consensus       189 ~e~~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d  227 (330)
T COG4170         189 MEPTTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWAD  227 (330)
T ss_pred             cCccHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhh
Confidence            9999999999 999999874 6666544    566666666655

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.25  E-value=3.8e-11  Score=99.83  Aligned_cols=50  Identities=10%  Similarity=0.071  Sum_probs=40.0

Q ss_pred             HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           86 DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        86 ~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++.++++++.  ..+|+++++|||++ +|+.....+. +.++++.+.|.+++++
T Consensus       102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii  154 (178)
T cd03239         102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI  154 (178)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            3788888752  12899999999999 9999999988 7888886666776655

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.24  E-value=8.2e-11  Score=124.45  Aligned_cols=71  Identities=20%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             HHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHc---cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        61 ~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~---~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                      ++++.+|++.. .+..  ...+++++  ++.||++++   .  +|+++||||||+ ||+.....++ ++++++.++|.++
T Consensus       791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV  865 (1809)
T PRK00635        791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV  865 (1809)
T ss_pred             HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence            36677888753 2222  23455543  489999997   5  899999999999 9999999999 9999998778887


Q ss_pred             EEE
Q 025795          134 CAV  136 (248)
Q Consensus       134 i~v  136 (248)
                      +++
T Consensus       866 IiI  868 (1809)
T PRK00635        866 VII  868 (1809)
T ss_pred             EEE
Confidence            766

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.23  E-value=3.4e-11  Score=102.87  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh--CCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      -.++|.||||+|||||+|.+..  .+ +..|......    .-.++|...           ++..  +++..........
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----~~~~~~~d~-----------i~~~--l~~~~si~~~~S~   91 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----SATIGLVDK-----------IFTR--MSSRESVSSGQSA   91 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----CcEEeeeee-----------eeee--eCCccChhhccch
Confidence            3578999999999999999983  33 4445433221    011222110           0000  0111000000112


Q ss_pred             hhhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           81 LEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        81 l~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                      +...+ ++.++.+++.  +|.++|+|||+. +|+.....+...+++++.+.
T Consensus        92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~  140 (213)
T cd03281          92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR  140 (213)
T ss_pred             HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence            22222 2555666666  999999999999 99987666654788888654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.21  E-value=2.5e-11  Score=103.72  Aligned_cols=40  Identities=10%  Similarity=0.067  Sum_probs=32.5

Q ss_pred             ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 025795           94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV  136 (248)
Q Consensus        94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~~ii~v  136 (248)
                      +.  +|+++++|||++ +|+.++..++ +++.++.++ | .+++++
T Consensus       146 ~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii  188 (213)
T cd03277         146 LT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI  188 (213)
T ss_pred             cc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence            46  999999999999 9999999999 888887655 5 345544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.21  E-value=2e-10  Score=116.32  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=54.1

Q ss_pred             HHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           61 DVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        61 ~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                      +.++.+||+.. .+..  ...++++  +++.||+++..  +|   +++|||||++ ||+.....++ ++++++.+.|.++
T Consensus       812 ~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TV  886 (943)
T PRK00349        812 QTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTV  886 (943)
T ss_pred             HHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence            45566777642 1222  2345555  34889999998  88   9999999999 9999999999 8899987778888


Q ss_pred             EEE
Q 025795          134 CAV  136 (248)
Q Consensus       134 i~v  136 (248)
                      +++
T Consensus       887 Iii  889 (943)
T PRK00349        887 VVI  889 (943)
T ss_pred             EEE
Confidence            766

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.20  E-value=2e-10  Score=101.41  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      ..++|+||||||||||++.++|.+++..|++.+.|.+..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence            467999999999999999999999999999999988753

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.19  E-value=7.5e-11  Score=100.12  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             HHHHHHHccCCCCCEEEEeCCC-----c-cCHHhHHHHHHHHHHHHHh
Q 025795           87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        87 ~~La~~l~~~~~p~~lilDEPt-----~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      .+||+++..  +|+++++||||     + ||+.+.+.+. ++++++++
T Consensus       161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~  205 (215)
T PTZ00132        161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN  205 (215)
T ss_pred             HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence            799999999  99999999999     9 9999999999 88888864

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.16  E-value=2.3e-10  Score=104.84  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=95.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC--------CCCCceEEEeccCCCCC-CCCCCcc---cChhhhhh--------HHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPAAE-NFDYPVA---MDIRELIS--------LED   61 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l--------~~~~G~i~i~~~d~~~~-~~~y~~~---~~i~e~i~--------~~~   61 (248)
                      .-+++|+|++||||||++++++|..        +|++|.|.+.-...++- .-.+.|.   .++-+++.        ..+
T Consensus       409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave  488 (593)
T COG2401         409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE  488 (593)
T ss_pred             CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence            3468999999999999999999964        68889888754332211 0112222   23444432        678


Q ss_pred             HHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        62 ~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ++++.|+++---.......++.++.  ..||..++.  .|.+++.||-.+ ||..+...+. +-+.++.+ .|.|++++
T Consensus       489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivv  564 (593)
T COG2401         489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVV  564 (593)
T ss_pred             HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence            9999999865433444566776664  789999999  999999999999 9999999999 55667764 58887766

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.16  E-value=3.8e-10  Score=114.15  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             HHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        61 ~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      ++++.+||+.. .+..  ...++++.  ++.||+++..- .+|+++|||||++ ||+.....+. ++++++.+.|.++++
T Consensus       810 ~~L~~~gL~~l~l~~~--~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIv  886 (924)
T TIGR00630       810 QTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVV  886 (924)
T ss_pred             HHHHHcCCCchhhcCc--cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            45566677642 1121  23455553  48889999851 1489999999999 9999999999 889999777888876


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      +
T Consensus       887 i  887 (924)
T TIGR00630       887 I  887 (924)
T ss_pred             E
Confidence            6

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.14  E-value=1.4e-10  Score=99.65  Aligned_cols=110  Identities=12%  Similarity=0.106  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-CCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l-~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|.||||||||||++.+.-.. -...|-     .-|+.. .    .+.     .+++++..+++.+....  ....+.
T Consensus        32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-~----~~~-----~~~~il~~~~l~d~~~~--~lS~~~   94 (222)
T cd03285          32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-A----DIP-----IVDCILARVGASDSQLK--GVSTFM   94 (222)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-E----EEe-----ccceeEeeeccccchhc--CcChHH
Confidence            68999999999999999987320 000110     001100 0    000     13445566666544311  122333


Q ss_pred             hhHHHHHHHHH--ccCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l--~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      .++ ..+++++  +.  +|+++|+|||   |+ +|......   .+++.+.+ .+.+++++
T Consensus        95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis  149 (222)
T cd03285          95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA  149 (222)
T ss_pred             HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence            344 6677777  45  9999999999   88 99887743   44566654 35665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.13  E-value=3.1e-10  Score=107.41  Aligned_cols=127  Identities=14%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC-C---CCCCCCcccChhhhh-----------------hHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-A---ENFDYPVAMDIRELI-----------------SLED   61 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~-~---~~~~y~~~~~i~e~i-----------------~~~~   61 (248)
                      -+.|.||||||||+|+|.+.|+-+..+|++..-... |. .   ..-||.+.=|.||++                 .+..
T Consensus       463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r  542 (659)
T KOG0060|consen  463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR  542 (659)
T ss_pred             eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence            467999999999999999999998888887654321 01 0   112232222334433                 2455


Q ss_pred             HHHHhCCCCCCch---------hhhHHhhh--hhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           62 VMEELGLGPNGGL---------IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        62 ~m~~~~L~~~~~~---------~~~~~~l~--~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                      .++.++|++...+         ..=++.++  +++|.++||.+..  +|++-||||-|+ ++......+. +.   .++.
T Consensus       543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~  616 (659)
T KOG0060|consen  543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM  616 (659)
T ss_pred             HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence            5555555532111         11123333  4567899999999  999999999999 9988776655 43   4455


Q ss_pred             CCeEEEE
Q 025795          130 NFNVCAV  136 (248)
Q Consensus       130 ~~~ii~v  136 (248)
                      |+|.+.|
T Consensus       617 giT~iSV  623 (659)
T KOG0060|consen  617 GITFISV  623 (659)
T ss_pred             CCeEEEe
Confidence            8887766

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.11  E-value=3e-10  Score=97.24  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhhhH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM   78 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~   78 (248)
                      +++|+||||||||||+|.+++..-. ..|..    .......+++.    +.+++++.+.         .+        .
T Consensus        32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g--------~   90 (216)
T cd03284          32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLA---------GG--------R   90 (216)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhc---------cC--------c
Confidence            5789999999999999999864311 11210    01111222221    1222222211         00        0


Q ss_pred             HhhhhhHHHHHHHHHccCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        79 ~~l~~~~~~~La~~l~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ..+...+ ..++.++....+|+++|+|||   |+ +|....   ...+++.+.+. +.+++++
T Consensus        91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~il~~l~~~~~~~vi~~  149 (216)
T cd03284          91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAIVEYLHEKIGAKTLFA  149 (216)
T ss_pred             chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHHHHHHHhccCCcEEEE
Confidence            1122222 345555543338999999999   77 887542   22566766654 6666544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.3e-10  Score=105.49  Aligned_cols=132  Identities=17%  Similarity=0.172  Sum_probs=78.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCCCCCCC--------------------------CcccChhhh
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFDY--------------------------PVAMDIREL   56 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~~~~~y--------------------------~~~~~i~e~   56 (248)
                      +|++||||-|||||++.|+.-  --|..=.+.+..+...+...+-                          .-+.++.+.
T Consensus       293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr  372 (807)
T KOG0066|consen  293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER  372 (807)
T ss_pred             ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            589999999999999999863  2333445555444332111000                          001112111


Q ss_pred             hh-----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795           57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV  116 (248)
Q Consensus        57 i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~  116 (248)
                      +.                 ++.++.-+|+.+.-....+ ..+++++  ++.|||+|..  +|-+|.|||||+ ||+-...
T Consensus       373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI  449 (807)
T KOG0066|consen  373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI  449 (807)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence            11                 3455555565554333333 3456654  4999999999  999999999999 9997653


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795          117 PVLRNFVDHLKSRNFNVCAVYLLDSQFI  144 (248)
Q Consensus       117 ~~~~~ll~~l~~~~~~ii~v~l~d~~~~  144 (248)
                      .+- +   .|+.+..|+++|. +|-.|+
T Consensus       450 WLd-N---YLQgWkKTLLIVS-HDQgFL  472 (807)
T KOG0066|consen  450 WLD-N---YLQGWKKTLLIVS-HDQGFL  472 (807)
T ss_pred             ehh-h---HHhhhhheeEEEe-cccchH
Confidence            322 3   3444566777663 444443

>TIGR01069 mutS2 MutS2 family protein

Probab=99.06  E-value=3.2e-10  Score=113.07  Aligned_cols=116  Identities=13%  Similarity=0.160  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CCCCCc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      -.++|.||||+|||||+|.++|. +.+..| .|....    ...++|...      +     ..  .+++.......+..
T Consensus       323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~------i-----~~--~i~~~~si~~~LSt  385 (771)
T TIGR01069       323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEE------I-----FA--DIGDEQSIEQNLST  385 (771)
T ss_pred             eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhh------e-----ee--ecChHhHHhhhhhH
Confidence            36799999999999999999998 455555 221110    012333111      0     00  11111111111334


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++.++ ..++..+....+|.++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus       386 fS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit  441 (771)
T TIGR01069       386 FSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT  441 (771)
T ss_pred             HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            55555 33333333323899999999999 999999988657888887777766554

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.06  E-value=6.4e-10  Score=95.64  Aligned_cols=115  Identities=15%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh-CCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g-~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|+||||+||||+++.+++ .+.+..|...+.. .   -.++|...+           +..++-..+  .......+.
T Consensus        33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i-----------~~~~~~~d~--~~~~~StF~   95 (222)
T cd03287          33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV-----------LTRMGASDS--IQHGMSTFM   95 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE-----------EEEecCccc--cccccchHH
Confidence            578999999999999999999 6677788754331 1   112332110           001111000  000012233


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ..+ ..++..+....++.++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus        96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~  150 (222)
T cd03287          96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV  150 (222)
T ss_pred             HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence            333 44444444434899999999987 77666666544778888765 6555544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.00  E-value=3.6e-09  Score=90.11  Aligned_cols=68  Identities=19%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHH--HHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLA--EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV  133 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La--~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i  133 (248)
                      +.+.+...++.+.        .+++|.+  .+||  -|+....+.++++||||.+ ||...+..+. ++++++.+ +..+
T Consensus       123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~  192 (220)
T PF02463_consen  123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF  192 (220)
T ss_dssp             HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred             ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence            5566777777665        4556543  2222  2333443778999999999 9999999998 88888854 3455


Q ss_pred             EEE
Q 025795          134 CAV  136 (248)
Q Consensus       134 i~v  136 (248)
                      +++
T Consensus       193 ii~  195 (220)
T PF02463_consen  193 IIT  195 (220)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            544

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.98  E-value=1.6e-09  Score=99.74  Aligned_cols=126  Identities=16%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCCCCCcccChhhhhh------------HHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L~   69 (248)
                      .++..+|.||.|||||++.++|.++|+.| ++-..+.....+.+.-...-++|+.+.            +.++|+-+.+.
T Consensus       368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie  447 (592)
T KOG0063|consen  368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE  447 (592)
T ss_pred             eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence            35778999999999999999999999875 444444333333332222335555443            55666655443


Q ss_pred             CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeE
Q 025795           70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNV  133 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~i  133 (248)
                      .--+.-  ...++++  +|++++.++..  .+++++.|||.. +|...+.... +.+++.. ..+++-
T Consensus       448 ~i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkta  510 (592)
T KOG0063|consen  448 NIIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTA  510 (592)
T ss_pred             HHHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchh
Confidence            321111  2233333  45888888888  899999999999 9999988877 6666643 444444

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.91  E-value=7e-09  Score=82.66  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhh---HHhh
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEHL   81 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~---~~~l   81 (248)
                      ++|.||||+||||+++.+++...+.++.+.+...+.....        .....   ......+...+......   ....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   70 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPAA   70 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCcH
Confidence            6899999999999999999998888888888765432111        00000   00111111000000000   0001


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY  137 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~---------~~~~~~~ll~~l~~~~~~ii~v~  137 (248)
                      ......+.+.+...  +|+++++|||+. ++...         ....+.++....++.+.+++++.
T Consensus        71 ~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~  134 (165)
T cd01120          71 ARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL  134 (165)
T ss_pred             HHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence            00111344555555  899999999997 54432         12333366666655688877764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.91  E-value=3.4e-09  Score=91.56  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             CCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795           98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVYL  138 (248)
Q Consensus        98 ~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~~~~~ii~v~l  138 (248)
                      +|+++++|||++ +    |+...+.+. ++++.+++.|.+++++|.
T Consensus       117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~~  161 (230)
T PRK08533        117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTAN  161 (230)
T ss_pred             CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEec
Confidence            799999999998 7    677777777 888888777777766653

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.86  E-value=4.3e-09  Score=93.20  Aligned_cols=54  Identities=17%  Similarity=-0.060  Sum_probs=38.8

Q ss_pred             hhhhHH--HHHHHHHccC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~~~--~~La~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++++++  +.+|++++..  .+|+++++|||++ +|+.....+. ++++++.+ +.+++++
T Consensus       171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i  229 (276)
T cd03241         171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI  229 (276)
T ss_pred             cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence            445433  5666544321  2899999999999 9999999998 88888754 5666555

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.86  E-value=8.1e-09  Score=97.18  Aligned_cols=123  Identities=19%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC---Cccc---Chhhhhh-----------------HH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY---PVAM---DIRELIS-----------------LE   60 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y---~~~~---~i~e~i~-----------------~~   60 (248)
                      -+.|+||||||||+|+|+|.|+-+...|...+-    ..+.+-|   .|.+   +.||+|-                 ++
T Consensus       510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~  585 (728)
T KOG0064|consen  510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE  585 (728)
T ss_pred             eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence            367999999999999999999988777765431    1111111   1111   2222221                 22


Q ss_pred             HHHHHhCCCC-----CC--chhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           61 DVMEELGLGP-----NG--GLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        61 ~~m~~~~L~~-----~~--~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                      .++..+.|..     .|  +...-.+.+++  +++..+||.+.+  +|+|.++||-|+ +-+.....+.    +..+..|
T Consensus       586 ~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~g  659 (728)
T KOG0064|consen  586 AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAG  659 (728)
T ss_pred             HHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcC
Confidence            2333222211     00  01111234444  356888999988  999999999998 7666654444    4444568


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++.|
T Consensus       660 i~llsi  665 (728)
T KOG0064|consen  660 ISLLSI  665 (728)
T ss_pred             ceEEEe
Confidence            887655

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.86  E-value=2.1e-08  Score=93.63  Aligned_cols=130  Identities=16%  Similarity=0.172  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CC--------CCCCC----------CcccChhhhhh-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY----------PVAMDIRELIS-----   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~~--------~~~~y----------~~~~~i~e~i~-----   58 (248)
                      -++||.|-.|-|-+.|+.+|+|+.++.+|+|.+.|.|. ..        ..+.|          .+++++.+++-     
T Consensus       285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~  364 (501)
T COG3845         285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD  364 (501)
T ss_pred             cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence            47999999999999999999999998899999999885 11        12333          22455555542     


Q ss_pred             ------------------HHHHHHHhCCCCCCchhhhHHhhhh-h-HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795           59 ------------------LEDVMEELGLGPNGGLIYCMEHLED-N-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (248)
Q Consensus        59 ------------------~~~~m~~~~L~~~~~~~~~~~~l~~-~-~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~  117 (248)
                                        ..+++++|+.-+.+.... ...+++ | +++.+||.+..  +|++||+-.||. ||..+...
T Consensus       365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~  441 (501)
T COG3845         365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF  441 (501)
T ss_pred             ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-hhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence                              678888998874433332 234444 3 45889999999  999999999999 99999988


Q ss_pred             HHHHHHHHHHhCCCeEEEE
Q 025795          118 VLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       118 ~~~~ll~~l~~~~~~ii~v  136 (248)
                      +. +.+.+.++.|..++++
T Consensus       442 I~-~~l~e~r~~G~AVLLi  459 (501)
T COG3845         442 IH-ERLLELRDAGKAVLLI  459 (501)
T ss_pred             HH-HHHHHHHhcCCEEEEE
Confidence            87 6666777789888766

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.82  E-value=5.4e-08  Score=81.03  Aligned_cols=124  Identities=14%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEec-cCCCC------------CCCCCCcccChhhhhh----HHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPAA------------ENFDYPVAMDIRELIS----LEDVME   64 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~-~d~~~------------~~~~y~~~~~i~e~i~----~~~~m~   64 (248)
                      ++.|+|.||||||||+..|+--...  .+|.=-+.+ .|+..            ...+-.-.+.......    ++|+..
T Consensus        39 IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~  118 (233)
T COG3910          39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEADG  118 (233)
T ss_pred             eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhhh
Confidence            6889999999999999999754422  222211111 11110            0000000112222222    455554


Q ss_pred             HhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +-+.+++.     +...+.+-+  ..+.+.+.   ..-++|+|||-+ |-+..+-+++ .+++.+.+.|..+|++
T Consensus       119 e~~~~~~s-----Lh~~SHGEsf~~i~~~rf~---~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA  184 (233)
T COG3910         119 EANYGGRS-----LHHMSHGESFLAIFHNRFN---GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA  184 (233)
T ss_pred             hcccCCcc-----hhhhccchHHHHHHHHHhc---cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence            44544432     233333321  33344433   568999999999 9999999999 9999998888766654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.82  E-value=1.2e-07  Score=85.70  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=36.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++++|||||||||++..|++++.+.+++|.+.+.|+
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            368999999999999999999999999889999998886

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.81  E-value=7e-08  Score=81.39  Aligned_cols=102  Identities=21%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .++|.||+||||||+++.+.+.+.+. +|.|...+.++.   ......   +..      ......+..          .
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E---~~~~~~---~~~------i~q~~vg~~----------~   60 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE---FVHESK---RSL------INQREVGLD----------T   60 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc---ccccCc---cce------eeecccCCC----------c
Confidence            47899999999999999999888654 567766543221   111100   000      001111111          0


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+...+++++..  +|+++++|||.  |.....    ..++ ....|..++.+
T Consensus        61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t  105 (198)
T cd01131          61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST  105 (198)
T ss_pred             cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence            1233667888888  99999999997  333222    3333 33567765543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.79  E-value=1.5e-09  Score=91.80  Aligned_cols=122  Identities=25%  Similarity=0.315  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCchhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC   77 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-----~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~   77 (248)
                      +-++++|+.|+|||||++.+.+...+......+.+..++....++     .+..|++.+..++.++..+..++++.....
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            678999999999999999999998887777666666665544444     345677888888999999999998866533


Q ss_pred             HHhhhhh----HHHHHHHHHccCCC-CCEEEEeCCCccCHHhHHHHHHHHHHHH
Q 025795           78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL  126 (248)
Q Consensus        78 ~~~l~~~----~~~~La~~l~~~~~-p~~lilDEPt~LD~~~~~~~~~~ll~~l  126 (248)
                      .......    ...|+......  . +++.+++-|.+.|.+.+......+.+.+
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~  137 (219)
T COG1100          86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQL  137 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhh
Confidence            2222122    11444433333  3 4799999999999999887773444443

>PRK13695 putative NTPase; Provisional

Probab=98.77  E-value=1.2e-08  Score=84.03  Aligned_cols=122  Identities=17%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----CCCCCCCCcccChhhhh-hHHHHHHHhCC-CCCC--ch
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELI-SLEDVMEELGL-GPNG--GL   74 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-----~~~~~~y~~~~~i~e~i-~~~~~m~~~~L-~~~~--~~   74 (248)
                      .++|+|++|||||||++.+.+.+.+ .|. .+.+.-.     ......+    ++.+.. .....+...+. +...  ..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~   75 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-KVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY   75 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence            4789999999999999999887665 342 2222211     0111111    111110 00111222222 1111  11


Q ss_pred             hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        75 ~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ....+-+ +.....+++....  +|+++++|||+.++... .... +.+..+.+.+.+++++
T Consensus        76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v  132 (174)
T PRK13695         76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIAT  132 (174)
T ss_pred             EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEE
Confidence            1111111 1111344444445  89999999987666555 3344 6666665667777665

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.73  E-value=2.3e-08  Score=102.37  Aligned_cols=128  Identities=18%  Similarity=0.244  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS-----------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~---~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~-----------   58 (248)
                      .+.++||+|||||||+++++|-...   ..|+|.++|.+...    ....|       .|.+|||+.+.           
T Consensus       143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r  222 (1391)
T KOG0065|consen  143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR  222 (1391)
T ss_pred             eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence            3679999999999999999997643   35689999977521    11222       23456666553           


Q ss_pred             -------------HHHHHHHhCCCCCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                                   .+.+++.+||..-.+-...   ..-.+++.  |+.++..++.  ++.+++.||+|. ||..+.-++.
T Consensus       223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~ii  300 (1391)
T KOG0065|consen  223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQII  300 (1391)
T ss_pred             cccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHHH
Confidence                         4578888998653322211   11122333  3888888888  999999999999 9999999999


Q ss_pred             HHHHHHHHhC-CCeEE
Q 025795          120 RNFVDHLKSR-NFNVC  134 (248)
Q Consensus       120 ~~ll~~l~~~-~~~ii  134 (248)
                       +.++.+... +.+.+
T Consensus       301 -k~lr~~a~~~~~t~~  315 (1391)
T KOG0065|consen  301 -KALRQLAHITGATAL  315 (1391)
T ss_pred             -HHHHHHHhhhcceEE
Confidence             888888754 44443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.72  E-value=4.2e-08  Score=98.28  Aligned_cols=112  Identities=15%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccCCCCC--CCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~d~~~~--~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      +++|.|||++||||++|.+... +-+..|-.     -|+.+  .+++..      .+     +.  .+|...........
T Consensus       329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~~--~ig~~~si~~~lSt  390 (782)
T PRK00409        329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----FA--DIGDEQSIEQSLST  390 (782)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----EE--ecCCccchhhchhH
Confidence            5789999999999999998643 12222210     02221  233311      11     11  12222111112334


Q ss_pred             hhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++.++.  ..+++++ .  +|.++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus       391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit  446 (782)
T PRK00409        391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT  446 (782)
T ss_pred             HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            555552  3344443 3  899999999999 999998888757888887767666554

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.72  E-value=1.3e-07  Score=100.82  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=53.2

Q ss_pred             HHHHHhCCCCC--CchhhhHHhhhhh--HHHHHHHHHccC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795           61 DVMEELGLGPN--GGLIYCMEHLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC  134 (248)
Q Consensus        61 ~~m~~~~L~~~--~~~~~~~~~l~~~--~~~~La~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii  134 (248)
                      +.|.++|||-.  |..   ...++++  +|+.||..|..- ..+.+++|||||. |++.....++ +++++|...|.|++
T Consensus      1681 ~~L~~vGLgYl~LGq~---~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvi 1756 (1809)
T PRK00635       1681 QALIDNGLGYLPLGQN---LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVI 1756 (1809)
T ss_pred             HHHHHcCCCeeeCCCc---CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEE
Confidence            44556666632  211   2345554  568899888751 1268999999999 9999999999 99999998899998


Q ss_pred             EE
Q 025795          135 AV  136 (248)
Q Consensus       135 ~v  136 (248)
                      +|
T Consensus      1757 vi 1758 (1809)
T PRK00635       1757 YI 1758 (1809)
T ss_pred             EE
Confidence            77

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.72  E-value=1.7e-07  Score=92.16  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             hhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE-Eecccc
Q 025795           80 HLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLDSQ  142 (248)
Q Consensus        80 ~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d~~  142 (248)
                      .++++  +|+.||..|..  +.   .++||||||. |-..-...++ +++++|...|.||++| |.+|..
T Consensus       822 TLSGGEaQRvKLA~EL~k--~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVI  888 (935)
T COG0178         822 TLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVI  888 (935)
T ss_pred             cccchHHHHHHHHHHHhh--ccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceE
Confidence            34443  56889999886  44   8999999999 9999999999 9999999899999887 555543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.70  E-value=9.2e-08  Score=82.06  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCC-CCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~-~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +++|.||||+||||+++.+.+..-. .-|-     .-|+.. .+++.      +.     ++..++-..+  .......+
T Consensus        32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~-----~vpa~~~~i~~~------~~-----i~~~~~~~d~--~~~~~StF   93 (218)
T cd03286          32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-----DVPAKSMRLSLV------DR-----IFTRIGARDD--IMKGESTF   93 (218)
T ss_pred             EEEEECCCCCchHHHHHHHHHHHHHHHcCC-----ccCccccEeccc------cE-----EEEecCcccc--cccCcchH
Confidence            5789999999999999999886321 1121     001110 11111      00     0111111111  00001123


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ...+ ..+++.+....+|.++++|||+. .++.....+...+++.+.+. +.+++++
T Consensus        94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~  149 (218)
T cd03286          94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS  149 (218)
T ss_pred             HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            2333 33444444333899999999998 99999888886668888764 6666544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.69  E-value=2.1e-06  Score=68.21  Aligned_cols=20  Identities=25%  Similarity=0.322  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++++|++|||||||++.+.+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68999999999999999994

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.69  E-value=1.3e-07  Score=77.91  Aligned_cols=38  Identities=11%  Similarity=0.068  Sum_probs=30.7

Q ss_pred             CCCEEEEeCCCc-cC---HHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        98 ~p~~lilDEPt~-LD---~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +|+++++|||+. +|   ...+..+. ++++.+++.|.+++++
T Consensus        95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v  136 (187)
T cd01124          95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLT  136 (187)
T ss_pred             CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            899999999999 88   65555555 7888887778887766

A related protein is found in archaea.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.67  E-value=1.4e-07  Score=84.91  Aligned_cols=100  Identities=19%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      ..++|.||+|||||||++++.+++++..|.+.+.  |+..-.+..+....+   . ..    .   ...+.       ..
T Consensus       145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l---~-~~----~---~~~~~-------~~  204 (308)
T TIGR02788       145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHL---F-YS----K---GGQGL-------AK  204 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEE---E-ec----C---CCCCc-------Cc
Confidence            4689999999999999999999999988877664  221111111000000   0 00    0   00000       00


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCe
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                      -.+...+..++..  +|+++++|||..      .+.+ .+++.+. .|..
T Consensus       205 ~~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~~  244 (308)
T TIGR02788       205 VTPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGHP  244 (308)
T ss_pred             cCHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCCC
Confidence            1122556667777  999999999996      3444 6667765 4543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd04163 Era Era subfamily

Probab=98.65  E-value=2.7e-06  Score=67.33  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ..++++|++|||||||++.+.|.
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999874

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=98.65  E-value=1.3e-06  Score=77.70  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|++|||||||++.+.|.
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~   28 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQ   28 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999873

>cd00880 Era_like Era (E

Probab=98.64  E-value=5.3e-07  Score=70.38  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=41.5

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl  177 (248)
                      ..++.++|.|+.-+..............+.+. ... +++.+|+..........     ........+.|.+-|+||+|+
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~  116 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL  116 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence            46899999999844433332211233333332 222 23345554443222221     233344568899999999999


Q ss_pred             ccch
Q 025795          178 VTNK  181 (248)
Q Consensus       178 l~~~  181 (248)
                      ....
T Consensus       117 ~~~~  120 (163)
T cd00880         117 LPEE  120 (163)
T ss_pred             CChh
Confidence            7643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01898 Obg Obg subfamily

Probab=98.64  E-value=9.9e-07  Score=71.10  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++|+|++|||||||++.+.|.
T Consensus         3 v~ivG~~~~GKStl~~~l~~~   23 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNA   23 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999863

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.63  E-value=3.2e-07  Score=70.16  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      -.+.|+||+||||||+++.+++.+......+.+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~   36 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI   36 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence            4678999999999999999999987765334443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.58  E-value=2.8e-06  Score=77.38  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=33.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +++++++||||+||||++..++.++...+.+|.+.+-|+
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt  178 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT  178 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            478999999999999999999998887777888876553

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.58  E-value=4.2e-08  Score=87.54  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~   40 (248)
                      ++++||.|||||||||+++.|.+++.  +.+|+|.+.+.|.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            58999999999999999999999987  6788998887764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.58  E-value=1.1e-07  Score=83.89  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=32.9

Q ss_pred             HhhhhhHH--HHHHHHHc---------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           79 EHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        79 ~~l~~~~~--~~La~~l~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++.+++  ..++++++         .  +|+++++|||++ ||+..+..+. +.++++
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~--~~~illlDEp~a~LD~~~~~~l~-~~l~~~  238 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSG--EYPVLLLDDVLAELDLGRQAALL-DAIEGR  238 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhC--CCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence            44455543  56676654         5  899999999999 9999998777 655543

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.57  E-value=1.2e-06  Score=71.91  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      |++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~   38 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT   38 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            57899999999999999999987766666788887775

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.56  E-value=1.7e-07  Score=86.63  Aligned_cols=131  Identities=19%  Similarity=0.149  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------CCCCCC--------------Ccc---------c
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVA---------M   51 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------~~~~~y--------------~~~---------~   51 (248)
                      -+.+++|.||-||||-+++++|-++|.-|.-. .+.+..        .+-..|              ++.         .
T Consensus       101 ~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~  179 (592)
T KOG0063|consen  101 QVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKG  179 (592)
T ss_pred             hhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHH
Confidence            35789999999999999999999999876531 111100        000011              000         0


Q ss_pred             Chhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           52 DIRELIS-------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        52 ~i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                      ++++.+.       .+++++.+.|+....+-  .+.+++  .++.++|.+..+  +.++.+||||.+ ||...+.... .
T Consensus       180 ~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~  254 (592)
T KOG0063|consen  180 TVGSLLDRKDERDNKEEVCDQLDLNNLLDRE--VEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-I  254 (592)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHhhHHHhh--hhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-H
Confidence            1121111       34555555554332222  122322  344778888888  999999999999 9999999888 8


Q ss_pred             HHHHHHhCC-CeEEEEEec
Q 025795          122 FVDHLKSRN-FNVCAVYLL  139 (248)
Q Consensus       122 ll~~l~~~~-~~ii~v~l~  139 (248)
                      .++.+..-+ ..+++.|.+
T Consensus       255 ~IRsl~~p~~YiIVVEHDL  273 (592)
T KOG0063|consen  255 TIRSLINPDRYIIVVEHDL  273 (592)
T ss_pred             HHHHhhCCCCeEEEEEeec
Confidence            888887644 334344543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.56  E-value=5.2e-07  Score=72.96  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=17.7

Q ss_pred             EEcCCCCcHHHHHHHHHhC
Q 025795            7 VIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         7 iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+|++|+|||||++.+.|.
T Consensus         1 iiG~~~~GKStll~~l~~~   19 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNA   19 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcC
Confidence            5899999999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.55  E-value=8.7e-07  Score=80.94  Aligned_cols=102  Identities=23%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+.|.||+||||||+++.+.+.+.. .+++|.....++..   .++..   ...+      .....+..          .
T Consensus       124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~---~~~i------~q~evg~~----------~  181 (343)
T TIGR01420       124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNK---RSLI------NQREVGLD----------T  181 (343)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCc---cceE------EccccCCC----------C
Confidence            5789999999999999999997764 46777666432110   01000   0000      00011111          0


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+...++.++..  +|+++++||+.  |..+....+    +. ...|..++.+
T Consensus       182 ~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~a-a~tGh~v~~T  226 (343)
T TIGR01420       182 LSFANALRAALRE--DPDVILIGEMR--DLETVELAL----TA-AETGHLVFGT  226 (343)
T ss_pred             cCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----HH-HHcCCcEEEE
Confidence            1233667778888  99999999997  655553323    33 3567776544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.55  E-value=9.2e-06  Score=67.21  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .-++|+|++|+|||||++.+.+
T Consensus        25 ~~v~ivG~~~~GKSsli~~l~~   46 (196)
T PRK00454         25 PEIAFAGRSNVGKSSLINALTN   46 (196)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            3589999999999999999997

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.53  E-value=5.1e-06  Score=70.07  Aligned_cols=23  Identities=30%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|+|++|+|||||+++|+|..
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~   24 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVW   24 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999874

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.52  E-value=6.3e-07  Score=75.64  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.+++++||+|+||||.+.-|+..+...+.+|.+...|..+          +.-.-.++.+.+.+|+.-......  +.-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----------~ga~eQL~~~a~~l~vp~~~~~~~--~~~   68 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----------IGAVEQLKTYAEILGVPFYVARTE--SDP   68 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----------THHHHHHHHHHHHHTEEEEESSTT--SCH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----------ccHHHHHHHHHHHhccccchhhcc--hhh
Confidence            57899999999999999999998877667788887766421          111112344445555431110000  000


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (248)
                      .+-.+.++...-..  +-+++++|.||-  -|.....++. ++++..  ....+++|  +++..-.+.  . .   ....
T Consensus        69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~--~~~~~~LV--lsa~~~~~~--~-~---~~~~  135 (196)
T PF00448_consen   69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL--NPDEVHLV--LSATMGQED--L-E---QALA  135 (196)
T ss_dssp             HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH--SSSEEEEE--EEGGGGGHH--H-H---HHHH
T ss_pred             HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc--CCccceEE--EecccChHH--H-H---HHHH
Confidence            00011222222223  568999999995  5655555544 666655  23334333  333322211  1 1   1111


Q ss_pred             HHHhhCCCeeeeecccccccchh
Q 025795          160 AMVQLELPHVNILSKMDLVTNKK  182 (248)
Q Consensus       160 ~~~~~~~p~~~vlsk~dll~~~~  182 (248)
                      ..-..+...+ |+||.|-..+.+
T Consensus       136 ~~~~~~~~~l-IlTKlDet~~~G  157 (196)
T PF00448_consen  136 FYEAFGIDGL-ILTKLDETARLG  157 (196)
T ss_dssp             HHHHSSTCEE-EEESTTSSSTTH
T ss_pred             HhhcccCceE-EEEeecCCCCcc
Confidence            1122344454 899999877654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.52  E-value=1.9e-06  Score=85.46  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~   40 (248)
                      -+++++||||+||||++..|++.+....|  +|.+...|.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt  225 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS  225 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence            47899999999999999999999865554  787776663

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.48  E-value=1.1e-07  Score=81.95  Aligned_cols=38  Identities=29%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE-eccC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD   39 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i-~~~d   39 (248)
                      ++++||.||||||||||++.|++.+++.+|.+.+ ...|
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D   71 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD   71 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence            4789999999999999999999999999998665 4443

>TIGR00436 era GTP-binding protein Era

Probab=98.47  E-value=6e-06  Score=72.78  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|++|+|||||++.+.|-
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~   23 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ   23 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999974

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.47  E-value=1.4e-06  Score=73.26  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      ++-++|+|++|+|||||++.|.|...+..|.+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~   34 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT   34 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence            3568999999999999999999987776666543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.47  E-value=1.5e-06  Score=77.98  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=36.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      +.+++|+||+|||||||+..+.+.+...+.++.+.+.||..
T Consensus        34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS   74 (300)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            46789999999999999999999988888899999988753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00053 DYNc Dynamin, GTPase

Probab=98.47  E-value=7.1e-06  Score=71.39  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC--CCCCCceEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH   34 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~   34 (248)
                      .++|+|++||||||++++++|.  .+...|.+.
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t   60 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence            4789999999999999999997  555566554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.45  E-value=2.1e-06  Score=80.77  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -.++|+|+||+|||||+++|+|..+++.|.+.+.|...
T Consensus       159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg  196 (438)
T PRK07721        159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG  196 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence            35799999999999999999999999999999887654

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.44  E-value=2.9e-06  Score=68.23  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ++|+|++|+|||||++.+.+...
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~~   24 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFS   24 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhcc
Confidence            68999999999999999988543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.43  E-value=1.4e-06  Score=69.42  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |-++++|++|+|||||++.+.+.
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999843

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.43  E-value=1.5e-06  Score=70.81  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +++|+|++|||||||++.+.+..+
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~   25 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQH   25 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhccc
Confidence            467999999999999999887643

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=2.6e-06  Score=78.47  Aligned_cols=91  Identities=19%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      -+++++||||+||||++..|++.+....|  +|.+...|.-.        ....|+  +..+.+.+|+.-...      .
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~  201 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K  201 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence            47889999999999999999987543323  56666544311        011222  223334445422110      0


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF  113 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~  113 (248)
                      -...+    ..++..+.+.+++|+|+||-  .|..
T Consensus       202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~  232 (374)
T PRK14722        202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT  232 (374)
T ss_pred             CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence            00111    22233222789999999994  6655

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.42  E-value=2.7e-07  Score=76.94  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      ..++|+|||||||||++++++|+++++.|.+.+.+
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            46899999999999999999999999999888754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.42  E-value=6.7e-07  Score=75.03  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=36.4

Q ss_pred             hhhHH--HHHHHHHccCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~~--~~La~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.|.+  ..+...+....+. .++++|||-+ |.|...+.++ ++++.+.+.+..++++
T Consensus       238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit  295 (303)
T PF13304_consen  238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT  295 (303)
T ss_dssp             -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe
Confidence            44443  2455555542233 8999999998 9999999999 8887775545556544

>cd01895 EngA2 EngA2 subfamily

Probab=98.41  E-value=1.1e-05  Score=64.58  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ..++++|+.|+|||||++.+.+.
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCc
Confidence            46899999999999999999864

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.40  E-value=7.3e-07  Score=74.14  Aligned_cols=112  Identities=18%  Similarity=0.423  Sum_probs=62.2

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl  177 (248)
                      ...+-++|+||..|.      ..+..+.+...+..++   ++|+..-..+..     .-........+.|.+-|+||+|+
T Consensus        69 ~~~i~~iDtPG~~~f------~~~~~~~~~~~D~ail---vVda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~  134 (188)
T PF00009_consen   69 NRKITLIDTPGHEDF------IKEMIRGLRQADIAIL---VVDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL  134 (188)
T ss_dssp             SEEEEEEEESSSHHH------HHHHHHHHTTSSEEEE---EEETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred             ccceeecccccccce------eecccceeccccccee---eeeccccccccc-----ccccccccccccceEEeeeeccc
Confidence            567999999997542      2244445544444333   355543332221     12233445778899999999999


Q ss_pred             ccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccccH--HHHHHHHhh
Q 025795          178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKES--RRLLSQIMK  244 (248)
Q Consensus       178 l~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~--~~~~f~~l~~~~~~--~~~~~~id~  244 (248)
                      ++.+  +++.                   ..++...+.+-...-  ..+.++|+|.....  ..|+..+.+
T Consensus       135 ~~~~--~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~  184 (188)
T PF00009_consen  135 IEKE--LEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE  184 (188)
T ss_dssp             SHHH--HHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             hhhh--HHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence            8221  2111                   112222222222111  35789999999988  777777765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.39  E-value=1.3e-06  Score=75.26  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i~~~   38 (248)
                      .++.|.|++|||||||+..++ +.++ .++++.+...
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~   61 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT   61 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence            578899999999999999984 4343 4667777665

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.38  E-value=1.8e-05  Score=61.60  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++++|++|||||||++.+.+-.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            458999999999999999998743

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.36  E-value=3.5e-06  Score=72.86  Aligned_cols=119  Identities=19%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh------------CCCCCCceEEEecc-CCCCCCCCCCcccChhhhhhHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVNL-DPAAENFDYPVAMDIRELISLEDVMEELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g------------~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~   69 (248)
                      ++..|+||+|+|||||+-.++=            ......|+|.+... ++..         .+.+  .+..+...+++.
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~---------~i~~--Rl~~i~~~~~~~   70 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE---------EIHR--RLEAILQHLEPD   70 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH---------HHHH--HHHHHHhhcCCc
Confidence            4678999999999999988863            22334566655542 2211         0111  133333333322


Q ss_pred             CCCchhh---------hH-----HhhhhhHHHHHHHHH-ccCCCCCEEEEeCCCc-------cCHHhHHHHHHHHHHHHH
Q 025795           70 PNGGLIY---------CM-----EHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        70 ~~~~~~~---------~~-----~~l~~~~~~~La~~l-~~~~~p~~lilDEPt~-------LD~~~~~~~~~~ll~~l~  127 (248)
                      +...+.+         +.     ......+ ..+...+ ..  +|+++++| |.+       .|......++ +.++++.
T Consensus        71 ~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~--~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a  145 (239)
T cd01125          71 DAGDRLFIDSGRIQPISIAREGRIIVVPEF-ERIIEQLLIR--RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIA  145 (239)
T ss_pred             CcccceEEeccCCCceecccCCcccccHHH-HHHHHHHHhc--CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHH
Confidence            2111000         00     0011122 3333333 34  89999999 753       4777777777 6666665


Q ss_pred             h-CCCeEEEEE
Q 025795          128 S-RNFNVCAVY  137 (248)
Q Consensus       128 ~-~~~~ii~v~  137 (248)
                      + .|.+++++|
T Consensus       146 ~~~g~avl~v~  156 (239)
T cd01125         146 AQTGAAILLVH  156 (239)
T ss_pred             HHhCCEEEEEe
Confidence            4 588888886

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK09866 hypothetical protein; Provisional

Probab=98.36  E-value=6e-05  Score=73.47  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++++|+|++|+|||||+++|.|..
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~   93 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTE   93 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCc
Confidence            678999999999999999999964

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.36  E-value=3.8e-06  Score=68.40  Aligned_cols=118  Identities=20%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~   83 (248)
                      -++++|.+-+|||||++.|+|..      ..+.|.          |..|+.-                         ..+
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~----------pG~Tv~~-------------------------~~g   40 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW----------PGTTVEK-------------------------KEG   40 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS------EEEEES----------TTSSSEE-------------------------EEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC------ceecCC----------CCCCeee-------------------------eeE
Confidence            37899999999999999999974      333332          1112210                         000


Q ss_pred             hHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHH
Q 025795           84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM  161 (248)
Q Consensus        84 ~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~  161 (248)
                      .+       -..  +.++.++|-||.  +...+..+.+  ..+.+.... .=++++.+|+....       .-+......
T Consensus        41 ~~-------~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~-~D~ii~VvDa~~l~-------r~l~l~~ql  101 (156)
T PF02421_consen   41 IF-------KLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEK-PDLIIVVVDATNLE-------RNLYLTLQL  101 (156)
T ss_dssp             EE-------EET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHHTS-SSEEEEEEEGGGHH-------HHHHHHHHH
T ss_pred             EE-------Eec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhhcC-CCEEEEECCCCCHH-------HHHHHHHHH
Confidence            00       002  567999999994  7777654432  122232333 33466678887653       223445566


Q ss_pred             HhhCCCeeeeecccccccch
Q 025795          162 VQLELPHVNILSKMDLVTNK  181 (248)
Q Consensus       162 ~~~~~p~~~vlsk~dll~~~  181 (248)
                      ..++.|.+-|+||+|+++++
T Consensus       102 ~e~g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen  102 LELGIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             HHTTSSEEEEEETHHHHHHT
T ss_pred             HHcCCCEEEEEeCHHHHHHc
Confidence            68899999999999998765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.36  E-value=1.9e-06  Score=75.34  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      .++|+||+|+||||+++.+.+.+....+
T Consensus        18 r~~I~G~~G~GKTTLlr~I~n~l~~~~f   45 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAITKNHP   45 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccccccC
Confidence            5789999999999999999998877543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.36  E-value=2e-05  Score=64.25  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      ++|+|..|||||||++.+.+...+
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~   25 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGD   25 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCC
Confidence            689999999999999999987544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.35  E-value=2.5e-07  Score=79.41  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD   39 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d   39 (248)
                      ++||.||||||||||++.|.+.+.+  .++++.+...|
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D   38 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD   38 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence            4799999999999999999999875  56777775544

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.35  E-value=2e-06  Score=66.39  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      .+.|.||+|+||||+++.+...+...+..+.+.
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            578999999999999999999876444444444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd00157 Rho Rho (Ras homology) family

Probab=98.34  E-value=3.6e-06  Score=67.80  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++++|++|||||||++.+.+.-
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            46899999999999999998753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.34  E-value=8.7e-07  Score=67.71  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++|+|++|+|||||++.|.|.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999973

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.33  E-value=3.9e-06  Score=64.44  Aligned_cols=75  Identities=13%  Similarity=0.072  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl  177 (248)
                      +.++.+.|.|++-+.....       ....+..-.++++  +|+..-....................+.|.+-|+||+|+
T Consensus        44 ~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~  114 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLR-------RLYYRGADGIILV--YDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL  114 (157)
T ss_pred             EEEEEEEecCChHHHHhHH-------HHHhcCCCEEEEE--EECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence            5678999999973332221       1111222233333  444432222222111123445566778999999999998


Q ss_pred             ccch
Q 025795          178 VTNK  181 (248)
Q Consensus       178 l~~~  181 (248)
                      ....
T Consensus       115 ~~~~  118 (157)
T cd00882         115 PEER  118 (157)
T ss_pred             cccc
Confidence            6543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.33  E-value=4e-06  Score=77.60  Aligned_cols=38  Identities=24%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      .+++++|||||||||++..|++.+...+.+|.+...|+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt  279 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH  279 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence            47899999999999999999998765555777776664

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.33  E-value=5.3e-07  Score=68.80  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -+++|+||+|||||||++++.      +|++.++|.|.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di   47 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDN   47 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence            468999999999999999986      78899998776

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.31  E-value=1.2e-06  Score=70.58  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=35.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      ++++|++||||||+++.+...+.+.++++.+.+.|+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~   39 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS   39 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence            68999999999999999999999999999999998754

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.31  E-value=5.3e-06  Score=65.39  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|||||||++.+.+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999874

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.30  E-value=1.8e-05  Score=69.09  Aligned_cols=96  Identities=24%  Similarity=0.328  Sum_probs=56.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~   83 (248)
                      .++|.||+||||||+++.+...+.+.  .+.+....        .+..+..+.  ...+...+|+.+.+...   .....
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~  109 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR  109 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence            57899999999999999999987753  23222211        112234442  44566777776544221   11222


Q ss_pred             hHHHHHHHHH-ccCCCCCEEEEeCCCccCHHhHH
Q 025795           84 NLDDWLAEEL-DNYLDDDYLVFDCPGQIELFTHV  116 (248)
Q Consensus        84 ~~~~~La~~l-~~~~~p~~lilDEPt~LD~~~~~  116 (248)
                      .+..++.... ..  ++.++++||.-.++.....
T Consensus       110 ~l~~~l~~~~~~~--~~~vliiDe~~~l~~~~~~  141 (269)
T TIGR03015       110 ELEDFLIEQFAAG--KRALLVVDEAQNLTPELLE  141 (269)
T ss_pred             HHHHHHHHHHhCC--CCeEEEEECcccCCHHHHH
Confidence            3323333323 33  6779999996668866543

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.29  E-value=3e-05  Score=65.32  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++++|+.|+|||||+..|.+..
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~   26 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVL   26 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999998754

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.29  E-value=8.9e-06  Score=72.05  Aligned_cols=108  Identities=15%  Similarity=0.122  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+++++||+|+||||.+..++..+...+.+|.+...|+..          ....-....+.+..++.-..... ..+ ..
T Consensus        73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~d-p~  140 (272)
T TIGR00064        73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GAD-PA  140 (272)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CCC-HH
Confidence            5788999999999999999999888777789998877621          11122344455555533110000 000 00


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDH  125 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~  125 (248)
                      ......+..+...  +-+++|+|.|+.  .|.....++. ++.+.
T Consensus       141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~  182 (272)
T TIGR00064       141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRV  182 (272)
T ss_pred             HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHH
Confidence            0000223333345  789999999996  4544444433 44443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.27  E-value=4.5e-05  Score=65.63  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH-hCCCCCCceE
Q 025795            5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTM   33 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i   33 (248)
                      ++++|++|+|||||++.+. |...+..|..
T Consensus         2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~   31 (224)
T cd04165           2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKA   31 (224)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCcCCCCCeE
Confidence            5789999999999999998 5555544433

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00235 udk uridine kinase

Probab=98.26  E-value=7.1e-07  Score=75.55  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+++|+||||||||||++.|++.+++  +.+.+...|
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D   41 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD   41 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence            68999999999999999999999876  445555444

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.26  E-value=7e-07  Score=74.87  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +++|.||+|||||||++.|.+.+  .+|.+.+.+.|.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~   35 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS   35 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            47999999999999999999988  456777777663

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.26  E-value=8.1e-07  Score=83.69  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA   41 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~   41 (248)
                      -+++|+||+|||||||++  .|..+|++| +|.++|.+..
T Consensus        33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF   70 (504)
T ss_pred             CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence            478999999999999999  788888888 7999997763

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd01862 Rab7 Rab7 subfamily

Probab=98.24  E-value=1.6e-05  Score=64.06  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++|+|++|||||||++.+.+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.23  E-value=6.8e-05  Score=70.34  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=33.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++++|++||||||++.-|+.++...+.+|.+...|+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~  138 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT  138 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence            368999999999999999999988876555888887765

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01878 HflX HflX subfamily

Probab=98.23  E-value=8e-06  Score=68.40  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++|+|++|||||||++.+.+-
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999999999999885

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.23  E-value=1.6e-05  Score=75.65  Aligned_cols=87  Identities=22%  Similarity=0.313  Sum_probs=52.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      .+++++||||+||||++..|++.+....|  +|.+...|+      |  .+...|++  ..+.+.+|+.....       
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt------~--RigA~EQL--r~~AeilGVpv~~~-------  319 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS------Y--RIGGHEQL--RIYGKILGVPVHAV-------  319 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc------c--chhHHHHH--HHHHHHhCCCeecc-------
Confidence            57999999999999999999998876655  576666554      1  12344433  33444555432110       


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                       ......++  .+..+.+.+++++|++|-
T Consensus       320 -~~~~Dl~~--aL~~L~d~d~VLIDTaGr  345 (484)
T PRK06995        320 -KDAADLRL--ALSELRNKHIVLIDTIGM  345 (484)
T ss_pred             -CCchhHHH--HHHhccCCCeEEeCCCCc
Confidence             01111122  222322668999999983

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.23  E-value=3.6e-05  Score=72.35  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-C-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      .+++++||+|+||||++..|+..+. . .+.+|.+...|+..          +.-.-.+..+.+.+++.-...       
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r----------~~a~eqL~~~a~~~~vp~~~~-------  284 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR----------IGAVEQLKTYAKIMGIPVEVV-------  284 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH----------HHHHHHHHHHHHHhCCceEcc-------
Confidence            3689999999999999999998775 2 34578888766521          000011223333444432110       


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD  124 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~  124 (248)
                        ... ..+..++..+.+.+++|+|+||.  .|......+. ++++
T Consensus       285 --~~~-~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~  326 (424)
T PRK05703        285 --YDP-KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE  326 (424)
T ss_pred             --CCH-HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence              001 11222332222689999999995  7776665554 5555

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.23  E-value=4.6e-06  Score=74.24  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-C-ceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~-G~i~i~~~d~   40 (248)
                      .+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            478999999999999999999988654 3 5888887664

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.22  E-value=2.8e-06  Score=69.11  Aligned_cols=122  Identities=20%  Similarity=0.324  Sum_probs=66.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C----CCCCCCCCcccChhhhhh-HHHHHHHhCC-----C
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P----AAENFDYPVAMDIRELIS-LEDVMEELGL-----G   69 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~----~~~~~~y~~~~~i~e~i~-~~~~m~~~~L-----~   69 (248)
                      |..-++|.||+|+||||+++-+.+.++..+  ..+.|.- +    .....+|    +|.+.-+ -+.++...+.     |
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvG   77 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVG   77 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccc
Confidence            456789999999999999999998876542  2222210 0    0111222    1111111 0011111122     2


Q ss_pred             CCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+-..   +.+-.-...+|.+|+.   .+|++|+||-+-+|+.+. .+. +.+++..+.+..++++
T Consensus        78 kY~V~v---~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat  136 (179)
T COG1618          78 KYGVNV---EGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT  136 (179)
T ss_pred             eEEeeH---HHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence            221111   1111111245556654   479999999999999875 445 6677766667776655

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.21  E-value=6.4e-05  Score=69.94  Aligned_cols=79  Identities=24%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             CEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--cChHHHHHHHHHHHHHH--HhhCCCeeeeecc
Q 025795          100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILSK  174 (248)
Q Consensus       100 ~~lilDEPt~LD~~~~-~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~~~vlsk  174 (248)
                      .+++.|.|+..+..+. ..+..++++.+.+  . =+++|++|....  .++..-...++-.+...  -..+.|.+-|+||
T Consensus       208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r--a-dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNK  284 (390)
T PRK12298        208 SFVVADIPGLIEGASEGAGLGIRFLKHLER--C-RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNK  284 (390)
T ss_pred             EEEEEeCCCccccccchhhHHHHHHHHHHh--C-CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeC
Confidence            4899999998664432 1233355555533  2 235566776532  23332222222211111  1136799999999


Q ss_pred             cccccch
Q 025795          175 MDLVTNK  181 (248)
Q Consensus       175 ~dll~~~  181 (248)
                      +|+..+.
T Consensus       285 iDl~~~~  291 (390)
T PRK12298        285 IDLLDEE  291 (390)
T ss_pred             CccCChH
Confidence            9997644

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.20  E-value=1.3e-05  Score=63.47  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.3

Q ss_pred             EEcCCCCcHHHHHHHHHhC
Q 025795            7 VIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         7 iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+|++|+|||||++.+.|-
T Consensus         1 l~G~~~~GKssl~~~~~~~   19 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGA   19 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcC
Confidence            5899999999999999874

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01864 Rab19 Rab19 subfamily

Probab=98.19  E-value=7.1e-05  Score=60.21  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|||||||++.+.+
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            5689999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
1yr6_A	262	Pab0955 Crystal Structure : A Gtpase In Apo Form Fr		4e-11

>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           + +G AGSGK+T      R+ E   +  + VNLD   +   Y  ++D+RE +++E++M E
Sbjct: 18  VFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDTGVKELPYEPSIDVREFVTVEEIMRE 76
Query: 66  LGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDH 125
            G GPNG ++   + L +  +++              + D PGQ+E F    +   F   
Sbjct: 77  -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF----LFHEFGVR 131
Query: 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNI--LSKMDLVTNKK 182
           L         VY+ D + +     +   C     A ++ L L    I  L+K+DL++ ++
Sbjct: 132 LMENLPYPLVVYISDPEILKKPNDY---CFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188
Query: 183 E 183
           +
Sbjct: 189 K 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	3e-68
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score =  210 bits (535), Expect = 3e-68
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 3   YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDV 62
              + +G AGSGK+T      R+ E   +    VNLD   +   Y  ++D+RE +++E++
Sbjct: 15  MIVVFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEI 73

Query: 63  MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF 122
           M E G GPNG ++   + L +  +++L + L    ++DY++ D PGQ+E F         
Sbjct: 74  MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132

Query: 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN-- 180
           +++L         VY+ D + +     +      +L   ++L    +  L+K+DL++   
Sbjct: 133 MENLPYP----LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188

Query: 181 -KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPLD 230
            ++  + + + +      +L+  M      +   +  ++ E    V  + L 
Sbjct: 189 KERHRKYFEDIDYLTARLKLDPSM---QGLMAYKMCSMMTEVLPPVRVLYLS 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 44/268 (16%), Positives = 82/268 (30%), Gaps = 84/268 (31%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVME 64
           L+ G  GSGK+     +    +   +              D+ +  ++++   S E V+E
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCK-------------MDFKIFWLNLKNCNSPETVLE 200

Query: 65  ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD 124
            L            + L   +D       D+  +          +I        LR    
Sbjct: 201 ML------------QKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQA--ELRRL-- 237

Query: 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEI 184
            LKS+ +  C + LL+ Q       F   C                   K+ L T  K++
Sbjct: 238 -LKSKPYENCLLVLLNVQNAKAWNAFNLSC-------------------KILLTTRFKQV 277

Query: 185 EDYLNP--ESQFLLSELNQHMAPQ-----FAK-LNKSLIELVDEYSMVSFMPL------- 229
            D+L+    +   L   +  + P        K L+    +L  E  +++  P        
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAE 335

Query: 230 DLRKESRRL----------LSQIMKMSY 247
            +R                L+ I++ S 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSL 363

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 15/74 (20%)

Query: 9   GPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------------PAAENFDYPVAMDIRE 55
           G + SGK+T  + L +       ++ + ++D                    Y +  D+  
Sbjct: 29  GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88

Query: 56  LISLEDVMEELGLG 69
           L     +  +L   
Sbjct: 89  LT--HQLFRQLKAS 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.94
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.93
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.93
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.93
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.93
1g6h_A	257	High-affinity branched-chain amino acid transport	99.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.92
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.92
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.92
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.92
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.92
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.92
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.91
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.89
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.88
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.86
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.85
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.84
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.83
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.81
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.77
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.74
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.72
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.7
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.68
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.67
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.62
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.61
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.6
2og2_A	359	Putative signal recognition particle receptor; nuc	99.56
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.55
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.52
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.52
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.52
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.52
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.51
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.51
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.49
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.46
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.43
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.42
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.41
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.39
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.37
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.34
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.34
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.3
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.28
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.27
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.27
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.26
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.25
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.25
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.23
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.22
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.2
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.2
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.19
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.13
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.11
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.1
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.1
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.08
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.05
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.03
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.0
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.0
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.0
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.0
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.98
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.95
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.93
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.91
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.88
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.87
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.86
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.85
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.79
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.78
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.74
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.73
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.72
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.68
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.66
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.65
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.62
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.6
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.59
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.59
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.58
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.56
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.55
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.54
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.53
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.53
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.53
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.52
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.52
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.51
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.51
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.51
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.48
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.48
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.46
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.46
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.44
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.44
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.43
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.43
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.41
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.41
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.4
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.39
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.37
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.34
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.34
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.32
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.32
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.31
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.31
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.3
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.3
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.29
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.29
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.27
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.27
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.27
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.26
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.24
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.24
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.23
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.23
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.23
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.21
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.2
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.2
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.19
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.19
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.18
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.18
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.18
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.16
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.15
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.14
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.13
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.13
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.13
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.11
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.1
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.1
3bos_A	242	Putative DNA replication factor; P-loop containing	98.09
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.07
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.07
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.07
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.07
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.06
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.04
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.03
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.03
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.0
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.0
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.99
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.96
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.96
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.96
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.94
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.94
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.94
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.94
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.94
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.92
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.91
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.91
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.84
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.83
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.83
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.83
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.79
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.78
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.78
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.77
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.77
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.76
2xxa_A	433	Signal recognition particle protein; protein trans	97.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.73
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.72
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.71
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.7
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.7
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.69
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.69
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.67
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.67
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.66
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.66
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.65
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.65
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.65
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.64
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.63
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.61
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.61
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.61
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.61
1via_A	175	Shikimate kinase; structural genomics, transferase	97.6
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.6
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.6
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.59
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.59
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.58
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.57
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.57
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.55
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.55
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.55
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.54
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.54
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.54
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.53
3co5_A	143	Putative two-component system transcriptional RES	97.53
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.53
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.53
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.52
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.52
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.51
2qgz_A	308	Helicase loader, putative primosome component; str	97.51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.5
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.49
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.48
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.48
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.46
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.45
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.44
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.44
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.44
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.44
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.44
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.43
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.42
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.41
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.4
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.4
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.39
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.39
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.38
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.37
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.36
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.36
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.36
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.35
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.35
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.35
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.35
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.35
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.33
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.32
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.31
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.3
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.3
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.3
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.3
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.3
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.29
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.29
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.28
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.28
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.28
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.26
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.26
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.24
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.22
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.2
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.2
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.2
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.19
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.18
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.18
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.18
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.17
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.17
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.15
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.15
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.14
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.14
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.14
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.13
3io5_A	333	Recombination and repair protein; storage dimer, i	97.13
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.08
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.07
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.06
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.04
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.02
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.01
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.98
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.96
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.96
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.94
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.94
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.92
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.92
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.92
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	96.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.89
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.88
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.87
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.85
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.85
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.85
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.83
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	96.83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.8
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.76
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.75
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.75
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.75
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.73
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.73
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.72
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.71
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.7
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.7
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.69
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.69
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.69
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.69
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	96.68
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.68
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.67
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.67
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.66
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.66
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.65
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.65
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.63
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.62
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.62
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.61
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.61
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.6
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.6
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.6
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.59
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.59
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.59
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.59
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.57
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.56
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.56
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.55
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.54
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.54
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.53
3end_A	307	Light-independent protochlorophyllide reductase ir	96.53
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.53
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.53
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.53
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.52
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.51
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.51
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.49
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.49
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.49
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.49
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.48
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.47
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.47
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.46
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	96.46
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	96.45
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.45
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.45
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.44
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.43
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.42
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.41
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.41
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	96.41
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.4
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.38

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.94  E-value=2.2e-27  Score=215.88  Aligned_cols=144  Identities=14%  Similarity=0.210  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...                 |+....+.+||++++.       
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~  134 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  134 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999987632                 2223345678988874       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+||.+.....  ...+++++  +++||++|+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       135 ~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l  209 (366)
T 3tui_C          135 TPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI  209 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence                     56789999997654333  23466654  4999999999  999999999999 9999999999 999999


Q ss_pred             Hh-CCCeEEEEEecccccccChHHHHHHHH
Q 025795          127 KS-RNFNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      ++ .|.++++|    +|.+.....+|+.++
T Consensus       210 ~~~~g~Tii~v----THdl~~~~~~aDrv~  235 (366)
T 3tui_C          210 NRRLGLTILLI----THEMDVVKRICDCVA  235 (366)
T ss_dssp             HHHSCCEEEEE----ESCHHHHHHHCSEEE
T ss_pred             HHhCCCEEEEE----ecCHHHHHHhCCEEE
Confidence            75 58898766    576665566655443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.93  E-value=5.3e-26  Score=196.16  Aligned_cols=139  Identities=16%  Similarity=0.215  Sum_probs=107.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----CCCCCC-------CcccChhhhhh-------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS-------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----~~~~~y-------~~~~~i~e~i~-------------   58 (248)
                      +++|+||||||||||+|+|+|+++|++|+|.++|.++.     ...++|       .+.++++|++.             
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~  105 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR  105 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence            68999999999999999999999999999999997652     122333       23467877763             


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       ++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++.+ .|.++
T Consensus       106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv  180 (240)
T 2onk_A          106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred             HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             45778889997654433  24566654  4899999999  999999999999 9999999999 88999865 48888


Q ss_pred             EEEEecccccccChHHHH
Q 025795          134 CAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~  151 (248)
                      +++    +|...+...++
T Consensus       181 i~v----tHd~~~~~~~~  194 (240)
T 2onk_A          181 LHV----THDLIEAAMLA  194 (240)
T ss_dssp             EEE----ESCHHHHHHHC
T ss_pred             EEE----eCCHHHHHHhC
Confidence            766    45554444443

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.93  E-value=1.1e-25  Score=192.04  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...           ..+.|       .+.++++|++.      
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  110 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM  110 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence            4689999999999999999999999999999999876521           11222       34568877763      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                +.++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. +++++
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~  185 (224)
T 2pcj_A          111 GKPKKEAKERGEYLLSELGLGDKLSRK--PYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLK  185 (224)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence                      45678889997654443  24566654  4899999999  999999999999 9999999999 89999


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      ++++|.+++++
T Consensus       186 l~~~g~tvi~v  196 (224)
T 2pcj_A          186 INEGGTSIVMV  196 (224)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCEEEEE
Confidence            87668888766

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.93  E-value=6.6e-26  Score=194.88  Aligned_cols=129  Identities=18%  Similarity=0.189  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                  ++....+.++++|++.      
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~  111 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence            4689999999999999999999999999999999976521                  2222244568888763      


Q ss_pred             -------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                   +.++++.+++.+.. ...  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ +
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~  186 (235)
T 3tif_A          112 YRGAMSGEERRKRALECLKMAELEERFANHK--PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-Q  186 (235)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-H
T ss_pred             hccCCCHHHHHHHHHHHHHHCCCChhhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence                         45678888886532 222  24566654  4999999999  999999999999 9999999999 9


Q ss_pred             HHHHHHhC-CCeEEEE
Q 025795          122 FVDHLKSR-NFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~-~~~ii~v  136 (248)
                      ++++++++ |.++++|
T Consensus       187 ~l~~l~~~~g~tvi~v  202 (235)
T 3tif_A          187 LLKKLNEEDGKTVVVV  202 (235)
T ss_dssp             HHHHHHHHHCCEEEEE
T ss_pred             HHHHHHHHcCCEEEEE
Confidence            99998754 8888766

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.93  E-value=8.1e-26  Score=197.50  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C--------------CCCCCCcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A--------------ENFDYPVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~--------------~~~~y~~~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++.  .              +...+.+.++++|++.        
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~  130 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK  130 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999997652  0              1222234567777653        


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               ++++++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++
T Consensus       131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l  205 (263)
T 2olj_A          131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL  205 (263)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence                     34678888887543333  24566654  4899999999  999999999999 9999999999 899998


Q ss_pred             HhCCCeEEEEEecccccccChHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .++|.+++++    +|.+.....++
T Consensus       206 ~~~g~tvi~v----tHd~~~~~~~~  226 (263)
T 2olj_A          206 ANEGMTMVVV----THEMGFAREVG  226 (263)
T ss_dssp             HHTTCEEEEE----CSCHHHHHHHC
T ss_pred             HhCCCEEEEE----cCCHHHHHHhC
Confidence            7668888766    56655444443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.93  E-value=3.7e-26  Score=198.93  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++..             +...+.+.++++|++.           
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~  121 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  121 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence            4789999999999999999999999999999999976531             2222234568888764           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++++.|
T Consensus       122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g  196 (256)
T 1vpl_A          122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG  196 (256)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence                 35678888987643333  24566654  4899999999  999999999999 9999999999 9999987678


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .+++++
T Consensus       197 ~tiiiv  202 (256)
T 1vpl_A          197 LTILVS  202 (256)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            887765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.93  E-value=6.5e-26  Score=197.92  Aligned_cols=141  Identities=19%  Similarity=0.223  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCCCcccChhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIRE   55 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~y~~~~~i~e   55 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..                           +...+.+.+++++
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e  112 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  112 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence            4789999999999999999999999999999999876530                           1222234567877


Q ss_pred             hhh-----------------HHHHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795           56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT  114 (248)
Q Consensus        56 ~i~-----------------~~~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~  114 (248)
                      ++.                 ++++++.+|+.+. ....  ...+++++  +++||++++.  +|+++|+||||+ ||+.+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~  188 (262)
T 1b0u_A          113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL  188 (262)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred             HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence            664                 3467788888654 3222  24566654  4899999999  999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +..+. +++++++++|.+++++    +|.+.....+++
T Consensus       189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d  221 (262)
T 1b0u_A          189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS  221 (262)
T ss_dssp             HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS
T ss_pred             HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCC
Confidence            99999 8999987668888766    566554444433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.93  E-value=7.5e-26  Score=198.91  Aligned_cols=141  Identities=13%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC--------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY--------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y--------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...         ..++|        ....++++++.       
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~  114 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK  114 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999987621         12222        12457887764       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               ++++++.+|+.+.....  ...+++++  +++||++++.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l  189 (275)
T 3gfo_A          115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM  189 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence                     56788999997654433  24566654  4999999999  999999999999 9999999999 999998


Q ss_pred             H-hCCCeEEEEEecccccccChHHHHH
Q 025795          127 K-SRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~-~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      + ++|.+++++    +|.+.....+++
T Consensus       190 ~~~~g~tvi~v----tHdl~~~~~~~d  212 (275)
T 3gfo_A          190 QKELGITIIIA----THDIDIVPLYCD  212 (275)
T ss_dssp             HHHHCCEEEEE----ESCCSSGGGGCS
T ss_pred             HhhCCCEEEEE----ecCHHHHHHhCC
Confidence            7 458888766    466655555544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.93  E-value=1.1e-25  Score=204.41  Aligned_cols=141  Identities=15%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---------CCCC-------CCCcccChhhhhh--------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENF-------DYPVAMDIRELIS--------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---------~~~~-------~y~~~~~i~e~i~--------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..         ...+       ...+.+||+|++.        
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~  110 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG  110 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999999999999999997651         1222       2345678988874        


Q ss_pred             --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH-
Q 025795           59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL-  126 (248)
Q Consensus        59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l-  126 (248)
                              ++++++.+++.+...+..  ..+++++  +++||++|+.  +|++|||||||+ ||+..+..+. +.+.++ 
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~  185 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYP--HELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL  185 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence                    678899999987655442  4566654  5999999999  999999999999 9999999998 655554 


Q ss_pred             HhCCCeEEEEEecccccccChHHHHH
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++.|.++++|    +|...+...+++
T Consensus       186 ~~~g~tvi~v----THd~~ea~~~aD  207 (359)
T 3fvq_A          186 RANGKSAVFV----SHDREEALQYAD  207 (359)
T ss_dssp             HHTTCEEEEE----CCCHHHHHHHCS
T ss_pred             HhCCCEEEEE----eCCHHHHHHHCC
Confidence            4568888766    566655555544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.93  E-value=9.7e-26  Score=206.13  Aligned_cols=141  Identities=15%  Similarity=0.129  Sum_probs=112.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+....|.+||+|++.            
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~  109 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  109 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999976532            2333456789998874            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+...+.  ...+++++  +++||++|+.  +|++||+||||+ ||+..+..+. +.++++.+ .|
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~--p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g  184 (381)
T 3rlf_A          110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  184 (381)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCC--GGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCchhhcCC--hhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence                56789999998765444  24566654  4999999999  999999999999 9999999998 88898865 48


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       185 ~tii~v----THd~~ea~~~aD  202 (381)
T 3rlf_A          185 RTMIYV----THDQVEAMTLAD  202 (381)
T ss_dssp             CEEEEE----CSCHHHHHHHCS
T ss_pred             CEEEEE----ECCHHHHHHhCC
Confidence            888766    566655554444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.93  E-value=6.9e-26  Score=195.26  Aligned_cols=140  Identities=15%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...        ..+.|       .+.++++|++.         
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  112 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK  112 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence            4789999999999999999999999999999999976531        11333       33567777663         


Q ss_pred             ------HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 ------LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ------~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                            ++++++.+ ++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++++
T Consensus       113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~  187 (240)
T 1ji0_A          113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence                  34566666 365443322  23455554  4899999999  999999999999 9999999999 88999876


Q ss_pred             CCCeEEEEEecccccccChHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .|.+++++    +|...+...++
T Consensus       188 ~g~tvi~v----tHd~~~~~~~~  206 (240)
T 1ji0_A          188 EGTTILLV----EQNALGALKVA  206 (240)
T ss_dssp             TTCCEEEE----ESCHHHHHHHC
T ss_pred             CCCEEEEE----ecCHHHHHHhC
Confidence            78888766    45554444443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.93  E-value=2e-25  Score=194.16  Aligned_cols=141  Identities=20%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI----------   57 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i----------   57 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...        ..+.|       .+.++++|++          
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~  113 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  113 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence            4789999999999999999999999999999999976521        11222       2234554433          


Q ss_pred             -------------------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        58 -------------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                                         .++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~  189 (257)
T 1g6h_A          114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA  189 (257)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence                               145677788886543333  24566654  4899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ..++ +++++++++|.+++++    +|.......+++
T Consensus       190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d  221 (257)
T 1g6h_A          190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID  221 (257)
T ss_dssp             HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence            9999 9999987678888766    465554444433

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.92  E-value=9.3e-26  Score=191.52  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCCCcccChhhhhh--------------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS--------------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y~~~~~i~e~i~--------------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++.  .       +...+.+.++++|++.              +
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  115 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  115 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence            368999999999999999999999999999999987641  1       2222334567777663              3


Q ss_pred             HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++++.+|+.+. ...  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++.++|.+++++
T Consensus       116 ~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv  189 (214)
T 1sgw_A          116 MDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS  189 (214)
T ss_dssp             HHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred             HHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            567888998765 333  34566654  4899999999  999999999999 9999999999 8888887557777665

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.92  E-value=3.4e-26  Score=200.16  Aligned_cols=143  Identities=20%  Similarity=0.274  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...              +.....+.+++++++.          
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ  117 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence            4789999999999999999999999999999999987632              1222234568888763          


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccC----CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                          ++++++.+++.+.....  ...+++++  +++||++++..    .+|++||+||||+ ||+.++..++ +++++++
T Consensus       118 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~  194 (266)
T 4g1u_C          118 DRQALQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT  194 (266)
T ss_dssp             HHHHHHHHHHHTTCSTTTTSB--GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence                67889999997664443  24566654  48999999851    1799999999999 9999999999 9999987


Q ss_pred             hC-CCeEEEEEecccccccChHHHHH
Q 025795          128 SR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       128 ~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      ++ +.+++++    +|.+.....+++
T Consensus       195 ~~~~~tvi~v----tHdl~~~~~~~d  216 (266)
T 4g1u_C          195 RQEPLAVCCV----LHDLNLAALYAD  216 (266)
T ss_dssp             HHSSEEEEEE----CSCHHHHHHHCS
T ss_pred             HcCCCEEEEE----EcCHHHHHHhCC
Confidence            54 5677655    576655555544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.92  E-value=2.5e-25  Score=201.94  Aligned_cols=141  Identities=17%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...     ..+       ...+.++++|++.            
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~  121 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE  121 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999976521     222       2345678888874            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+...+.  ...+++++  +++||++|+.  +|+++|||||++ ||+.++..+. ++++++.+ .|
T Consensus       122 ~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  196 (355)
T 1z47_A          122 MDARVRELLRFMRLESYANRF--PHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMG  196 (355)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                46788899997654443  24566654  4999999999  999999999999 9999999998 88888865 48


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .++++|    +|...+...+++
T Consensus       197 ~tvi~v----THd~~~a~~~ad  214 (355)
T 1z47_A          197 VTSVFV----THDQEEALEVAD  214 (355)
T ss_dssp             CEEEEE----CSCHHHHHHHCS
T ss_pred             CEEEEE----CCCHHHHHHhCC
Confidence            888766    566554444433

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.92  E-value=3.2e-25  Score=201.56  Aligned_cols=129  Identities=18%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            ++..+.+.+|+++++.            
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE  109 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            4689999999999999999999999999999999976521            2223345678888874            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+...+.  ...+++++  +++||++++.  +|+++|||||++ ||+.++..+. +.++++.+ .|
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  184 (359)
T 2yyz_A          110 VEKRVVEIARKLLIDNLLDRK--PTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG  184 (359)
T ss_dssp             TTHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                56789999997654443  24566654  4999999999  999999999999 9999999998 88888865 48


Q ss_pred             CeEEEE
Q 025795          131 FNVCAV  136 (248)
Q Consensus       131 ~~ii~v  136 (248)
                      .++++|
T Consensus       185 ~tvi~v  190 (359)
T 2yyz_A          185 ITSVYV  190 (359)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            888766

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.92  E-value=3.7e-25  Score=201.29  Aligned_cols=140  Identities=16%  Similarity=0.175  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            ++....+.+++++++.            
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  109 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE  109 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            4689999999999999999999999999999999976521            2222345678888874            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+...+.  ...+++++  +++||++|+.  +|+++|||||++ ||+..+..+. +.++++.+ .|
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  184 (362)
T 2it1_A          110 IDKKVREVAKMLHIDKLLNRY--PWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG  184 (362)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCchHhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence                46788899998765444  24566654  4999999999  999999999999 9999999998 88888865 48


Q ss_pred             CeEEEEEecccccccChHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .++++|    +|...+...++
T Consensus       185 ~tvi~v----THd~~~a~~~a  201 (362)
T 2it1_A          185 ITTVYV----THDQAEALAMA  201 (362)
T ss_dssp             CEEEEE----ESCHHHHHHHC
T ss_pred             CEEEEE----CCCHHHHHHhC
Confidence            888766    45544444333

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.92  E-value=4.7e-25  Score=199.74  Aligned_cols=139  Identities=15%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            ++....+.++++|++.            
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  106 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999976531            2223355678988874            


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       ++++++.+++.+...+.  ...+++++  +++||++|+.  +|+++|||||++ ||+.++..+. +.++++.+ .|.++
T Consensus       107 ~v~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti  181 (348)
T 3d31_A          107 RVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV  181 (348)
T ss_dssp             HHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence             45788899998765444  24566654  4999999999  999999999999 9999999998 88888864 58888


Q ss_pred             EEEEecccccccChHHH
Q 025795          134 CAVYLLDSQFITDVTKF  150 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~  150 (248)
                      ++|    +|...+...+
T Consensus       182 i~v----THd~~~~~~~  194 (348)
T 3d31_A          182 LHI----THDQTEARIM  194 (348)
T ss_dssp             EEE----ESCHHHHHHH
T ss_pred             EEE----eCCHHHHHHh
Confidence            766    4555444443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.92  E-value=4.7e-25  Score=201.32  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...     ..+       ...+.+|+++++.            
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~  117 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  117 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence            4689999999999999999999999999999999976521     122       2245678888764            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~  130 (248)
                          ++++++.+++.+...+..  ..++++  ++++||++|+.  +|+++|||||++ ||+..+..+. +.++++.++ |
T Consensus       118 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g  192 (372)
T 1v43_A          118 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK  192 (372)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence                567889999976544432  346655  45999999999  999999999999 9999999998 888888654 8


Q ss_pred             CeEEEEEecccccccChHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      .++++|    +|...+...++
T Consensus       193 ~tvi~v----THd~~~a~~~a  209 (372)
T 1v43_A          193 VTTIYV----THDQVEAMTMG  209 (372)
T ss_dssp             CEEEEE----ESCHHHHHHHC
T ss_pred             CEEEEE----eCCHHHHHHhC
Confidence            888766    35544433333

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.92  E-value=4.4e-25  Score=200.33  Aligned_cols=139  Identities=18%  Similarity=0.156  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----------C-------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------A-------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----------~-------~~~~y~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..          .       ++....+.++++|++.       
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~  111 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999986531          1       2222345678888764       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               ++++++.+++.+...+.  ...+++++  +++||++|+.  +|+++|||||++ ||+..+..+. +.++++
T Consensus       112 ~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l  186 (353)
T 1oxx_K          112 MSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV  186 (353)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence                     56788999997654443  24566654  4999999999  999999999999 9999999999 888888


Q ss_pred             Hh-CCCeEEEEEecccccccChHHH
Q 025795          127 KS-RNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+ .|.++++|    +|...+...+
T Consensus       187 ~~~~g~tvi~v----THd~~~~~~~  207 (353)
T 1oxx_K          187 QSRLGVTLLVV----SHDPADIFAI  207 (353)
T ss_dssp             HHHHCCEEEEE----ESCHHHHHHH
T ss_pred             HHhcCCEEEEE----eCCHHHHHHh
Confidence            65 48888766    4555444443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.92  E-value=6.8e-25  Score=200.35  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCC-------CCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENF-------DYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~-------~y~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..           ...+       ...+.+++++++.      
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  109 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence            368999999999999999999999999999999986531           1222       2345678888874      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+++.+...+.  ...+++++  +++||++|+.  +|+++|||||++ ||+..+..+. +.+++
T Consensus       110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~  184 (372)
T 1g29_1          110 KVPRQEIDQRVREVAELLGLTELLNRK--PRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK  184 (372)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCGGGTTCC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCchHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHH
Confidence                      46788899997654443  24566654  4999999999  999999999999 9999999998 88888


Q ss_pred             HHh-CCCeEEEEEecccccccChHHHHH
Q 025795          126 LKS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.+ .|.++++|    +|...+...+++
T Consensus       185 l~~~~g~tvi~v----THd~~~a~~~ad  208 (372)
T 1g29_1          185 LQRQLGVTTIYV----THDQVEAMTMGD  208 (372)
T ss_dssp             HHHHHTCEEEEE----ESCHHHHHHHCS
T ss_pred             HHHhcCCEEEEE----CCCHHHHHHhCC
Confidence            865 48888766    455544444433

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.91  E-value=1.4e-24  Score=188.22  Aligned_cols=138  Identities=17%  Similarity=0.227  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+|+|+|+++|+ |+|.++|.+...              +...+.+.++++|++.          
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  105 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE  105 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence            468999999999999999999999999 999999876421              2222234567887764          


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCC-------EEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~-------~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                       ++++++.+|+.+.....  ...+++++  +++||++++.  +|+       ++|+||||+ ||+.++..+. ++++++.
T Consensus       106 ~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~  180 (249)
T 2qi9_C          106 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALS  180 (249)
T ss_dssp             HHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence             46788899987654333  34566654  4899999999  999       999999999 9999999999 8999987


Q ss_pred             hCCCeEEEEEecccccccChHHH
Q 025795          128 SRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ++|.+++++    +|.......+
T Consensus       181 ~~g~tviiv----tHd~~~~~~~  199 (249)
T 2qi9_C          181 QQGLAIVMS----SHDLNHTLRH  199 (249)
T ss_dssp             HTTCEEEEE----CSCHHHHHHH
T ss_pred             hCCCEEEEE----eCCHHHHHHh
Confidence            668888665    5655433333

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=2e-24  Score=188.83  Aligned_cols=139  Identities=21%  Similarity=0.182  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCCCC--------CcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY--------PVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~~y--------~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+..    ...++|        .+..++++++.            
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~  113 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP  113 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence            478999999999999999999999999999999997652    111222        22357776653            


Q ss_pred             ---HHHHHHHhCCC--CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 ---~~~~m~~~~L~--~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                         ++++++.+|+.  +.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++.++|
T Consensus       114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g  188 (266)
T 2yz2_A          114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG  188 (266)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence               45788889987  443332  24566654  4899999999  999999999999 9999999999 8999987668


Q ss_pred             CeEEEEEecccccccChHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~  150 (248)
                      .+++++    +|.......+
T Consensus       189 ~tii~v----tHd~~~~~~~  204 (266)
T 2yz2_A          189 KTVILI----SHDIETVINH  204 (266)
T ss_dssp             CEEEEE----CSCCTTTGGG
T ss_pred             CEEEEE----eCCHHHHHHh
Confidence            888766    4555444443

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.91  E-value=7.2e-25  Score=193.01  Aligned_cols=129  Identities=15%  Similarity=0.261  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCC---------CcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY---------PVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y---------~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.++.  .       ..+.|         .+.++++|++.      
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~  127 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS  127 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence            468999999999999999999999999999999997764  1       22333         11236776652      


Q ss_pred             --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                    ++++++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..++ +
T Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~  202 (279)
T 2ihy_A          128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-S  202 (279)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred             cccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-H
Confidence                          45678888886544333  24566654  4899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhCCCeE--EEE
Q 025795          122 FVDHLKSRNFNV--CAV  136 (248)
Q Consensus       122 ll~~l~~~~~~i--i~v  136 (248)
                      +++++.++|.++  +++
T Consensus       203 ~l~~l~~~g~tv~~iiv  219 (279)
T 2ihy_A          203 ILDSLSDSYPTLAMIYV  219 (279)
T ss_dssp             HHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHCCCEEEEEEE
Confidence            899986557777  665

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.91  E-value=4.4e-24  Score=185.00  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+  ++|++|+|.++|.+...        ..+.|       .+.+++++++.       
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  109 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL  109 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence            47899999999999999999998  78999999999976531        12333       23456666552       


Q ss_pred             ------------HHHHHHHhCCC-CCCchhhhHHh-hhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        59 ------------~~~~m~~~~L~-~~~~~~~~~~~-l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                                  ++++++.+|+. ......  ... +++++  +++||++++.  +|+++|+||||+ ||+.++..++ +
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~  184 (250)
T 2d2e_A          110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R  184 (250)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred             cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence                        34567778884 332222  123 55554  4899999999  999999999999 9999999999 8


Q ss_pred             HHHHHHhCCCeEEEE
Q 025795          122 FVDHLKSRNFNVCAV  136 (248)
Q Consensus       122 ll~~l~~~~~~ii~v  136 (248)
                      +++++.+.|.+++++
T Consensus       185 ~l~~l~~~g~tvi~v  199 (250)
T 2d2e_A          185 GVNAMRGPNFGALVI  199 (250)
T ss_dssp             HHHHHCSTTCEEEEE
T ss_pred             HHHHHHhcCCEEEEE
Confidence            999986668887766

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=1.1e-23  Score=182.82  Aligned_cols=139  Identities=17%  Similarity=0.229  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhh--------------------hHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SLED   61 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i--------------------~~~~   61 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+... ....+...+.+..+++|++                    .+++
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  111 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ  111 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence            368999999999999999999999999999974210 0001222222334554443                    2566


Q ss_pred             HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEE
Q 025795           62 VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY  137 (248)
Q Consensus        62 ~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~  137 (248)
                      +++.+|+.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.++ |.+++++ 
T Consensus       112 ~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v-  185 (253)
T 2nq2_C          112 ALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT-  185 (253)
T ss_dssp             HHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE-
T ss_pred             HHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE-
Confidence            78888987644333  34566654  4899999999  999999999999 9999999999 889998765 8888766 


Q ss_pred             ecccccccChHHH
Q 025795          138 LLDSQFITDVTKF  150 (248)
Q Consensus       138 l~d~~~~~d~~~~  150 (248)
                         +|.......+
T Consensus       186 ---tHd~~~~~~~  195 (253)
T 2nq2_C          186 ---THQPNQVVAI  195 (253)
T ss_dssp             ---ESCHHHHHHH
T ss_pred             ---ecCHHHHHHh
Confidence               4655443333

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.90  E-value=8.4e-24  Score=183.01  Aligned_cols=130  Identities=18%  Similarity=0.118  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ....+++|++.          +
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  115 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV  115 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence            4689999999999999999999999999999999976532       11222      11247888774          3


Q ss_pred             HHHHHHhCCCCCCchh---------hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~---------~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++.+++.......         .....+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++.
T Consensus       116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~  192 (247)
T 2ff7_A          116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC  192 (247)
T ss_dssp             HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence            4566666664211000         0013455554  4999999999  999999999999 9999999999 8888884


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       +|.+++++
T Consensus       193 -~g~tviiv  200 (247)
T 2ff7_A          193 -KGRTVIII  200 (247)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCEEEEE
Confidence             58888766

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=7.3e-24  Score=185.37  Aligned_cols=130  Identities=16%  Similarity=0.136  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+|+|+|+  ++|++|+|.++|.+...        ..+.|       .+.+++++++.       
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~  126 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR  126 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence            47899999999999999999999  47899999999976421        11222       22344444331       


Q ss_pred             ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795           59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV  118 (248)
Q Consensus        59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~  118 (248)
                                      ++++++.+|+.. ...... ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l  203 (267)
T 2zu0_C          127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV  203 (267)
T ss_dssp             HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT-TTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-ccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence                            456778888863 322221 12366654  4999999999  999999999999 999999999


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 025795          119 LRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       119 ~~~ll~~l~~~~~~ii~v  136 (248)
                      + +++++++++|.+++++
T Consensus       204 ~-~~l~~l~~~g~tviiv  220 (267)
T 2zu0_C          204 A-DGVNSLRDGKRSFIIV  220 (267)
T ss_dssp             H-HHHHTTCCSSCEEEEE
T ss_pred             H-HHHHHHHhcCCEEEEE
Confidence            9 8888886567887665

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.89  E-value=3.7e-23  Score=181.34  Aligned_cols=129  Identities=18%  Similarity=0.190  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhhH----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELISL----------   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~~----------   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.| +     ...+++|++..          
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  125 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE  125 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence            4689999999999999999999999999999999976521       11222 1     12377776642          


Q ss_pred             ----------HHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        60 ----------~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                                .++++.+  |+.......  ...+++++  +++||++|+.  +|+++||||||+ ||+.++..++ ++++
T Consensus       126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~  200 (271)
T 2ixe_A          126 ITAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLY  200 (271)
T ss_dssp             HHHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence                      2233334  343322222  23466654  4899999999  999999999999 9999999999 8888


Q ss_pred             HHHh-CCCeEEEE
Q 025795          125 HLKS-RNFNVCAV  136 (248)
Q Consensus       125 ~l~~-~~~~ii~v  136 (248)
                      ++.+ .|.+++++
T Consensus       201 ~~~~~~g~tviiv  213 (271)
T 2ixe_A          201 ESPEWASRTVLLI  213 (271)
T ss_dssp             HCTTTTTSEEEEE
T ss_pred             HHHhhcCCEEEEE
Confidence            8854 47887766

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.89  E-value=2.7e-23  Score=179.24  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     ..++++++.           
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~  108 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED  108 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence            4789999999999999999999999999999999976521       22333 11     236777653           


Q ss_pred             HHHHHHHhCCCCCCchhh---------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~---------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++++.+++.+......         ....+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++
T Consensus       109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~  185 (243)
T 1mv5_A          109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL  185 (243)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred             HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence            456777788765432110         112455554  4899999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      . +|.+++++
T Consensus       186 ~-~~~tvi~v  194 (243)
T 1mv5_A          186 M-KGRTTLVI  194 (243)
T ss_dssp             H-TTSEEEEE
T ss_pred             c-CCCEEEEE
Confidence            6 58888766

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.89  E-value=4.9e-23  Score=179.86  Aligned_cols=124  Identities=14%  Similarity=0.224  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCCC-C-Cc----ccChhhhhh------------HHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED   61 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~~-y-~~----~~~i~e~i~------------~~~   61 (248)
                      +++|+||||||||||+|+|+|++ |++|+|.++|.+..    .+.+. | ++    ..+++|++.            +++
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~  110 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE  110 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence            68999999999999999999999 99999999986542    22344 4 22    457887764            457


Q ss_pred             HHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           62 VMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        62 ~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++.+++. +.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.++..+. ++++++.+   +++++
T Consensus       111 ~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv  181 (263)
T 2pjz_A          111 MLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV  181 (263)
T ss_dssp             HHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE
T ss_pred             HHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE
Confidence            78889987 543332  34566654  4899999999  999999999999 9999999988 88887743   66554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.88  E-value=2.6e-22  Score=174.91  Aligned_cols=129  Identities=19%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|++++ +|+|.++|.+...       +.+.| ++     ..++++++.          +
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~  125 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV  125 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence            47899999999999999999999987 8999999976521       12323 11     247887764          3


Q ss_pred             HHHHHHhCCCCC------Cch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPN------GGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~------~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++.+++.+.      +..   -.....+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++++++.
T Consensus       126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~  202 (260)
T 2ghi_A          126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR  202 (260)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence            345555554221      000   00012455554  4899999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.+++++
T Consensus       203 ~-~~tviiv  210 (260)
T 2ghi_A          203 K-NRTLIII  210 (260)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 7777665

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=1.7e-22  Score=180.02  Aligned_cols=130  Identities=16%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       ..+.|      ....||++++.          +
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~  160 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV  160 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence            4689999999999999999999999999999999987643       12222      12348888875          4


Q ss_pred             HHHHHHhCCCCC------Cchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLGPN------GGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~~~------~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.+.      +-..   .....+++++  +++|||+++.  +|++|||||||+ ||+.+...+. +.++++.
T Consensus       161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~  237 (306)
T 3nh6_A          161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC  237 (306)
T ss_dssp             HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence            455555554321      0000   0012355554  4999999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.++++|
T Consensus       238 ~-~~Tvi~i  245 (306)
T 3nh6_A          238 A-NRTTIVV  245 (306)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 6777655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.86  E-value=2.9e-22  Score=190.96  Aligned_cols=143  Identities=14%  Similarity=0.153  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhh-------------HHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELG   67 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~-------------~~~~m~~~~   67 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+.+...+.  +........++++++.             ++++++.++
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~  374 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN  374 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence            4789999999999999999999999999999887654321  2221223456666553             356677777


Q ss_pred             CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccc
Q 025795           68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQF  143 (248)
Q Consensus        68 L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~  143 (248)
                      +.+.....  ...+++++  +++||++|+.  +|++||+||||+ ||+.++..++ ++++++.+ .|.++++|    +|.
T Consensus       375 l~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd  445 (538)
T 3ozx_A          375 LHRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHD  445 (538)
T ss_dssp             GGGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSC
T ss_pred             CHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCC
Confidence            76554333  34566654  5999999999  999999999999 9999999999 99999864 58888766    566


Q ss_pred             ccChHHHHHHH
Q 025795          144 ITDVTKFISGC  154 (248)
Q Consensus       144 ~~d~~~~~s~~  154 (248)
                      +.....+++.+
T Consensus       446 l~~~~~~aDri  456 (538)
T 3ozx_A          446 LSIHDYIADRI  456 (538)
T ss_dssp             HHHHHHHCSEE
T ss_pred             HHHHHHhCCEE
Confidence            65555555433

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.86  E-value=1.8e-22  Score=173.65  Aligned_cols=129  Identities=20%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhC-----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELG-----   67 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~-----   67 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. +.+..++++++.         .+++.+.++     
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~  110 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL  110 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence            4789999999999999999999999999999997721 111221 223567777764         233444333     


Q ss_pred             -CCCCCch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH---HHHhCCCeEEEE
Q 025795           68 -LGPNGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAV  136 (248)
Q Consensus        68 -L~~~~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~---~l~~~~~~ii~v  136 (248)
                       +.|.+..   ......+++++  +++||++++.  +|+++|+||||+ ||+.++..++ +++.   ++. +|.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv  185 (237)
T 2cbz_A          111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV  185 (237)
T ss_dssp             TTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE
T ss_pred             HhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE
Confidence             2222100   01123455554  4899999999  999999999999 9999999888 6663   332 47777665

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.86  E-value=5.7e-22  Score=169.57  Aligned_cols=129  Identities=19%  Similarity=0.123  Sum_probs=89.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--   70 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~--   70 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+. +++|++.         ..++++..++..  
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~  113 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI  113 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence            3689999999999999999999999999999998721 11122222333 8888774         233444444421  


Q ss_pred             ----CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025795           71 ----NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ----~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v  136 (248)
                          .+...   .....+++++  +++||++++.  +|+++|+||||+ ||+.++..++ +. ++++. .+.+++++
T Consensus       114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v  186 (229)
T 2pze_A          114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV  186 (229)
T ss_dssp             TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred             HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence                11000   0013455554  4899999999  999999999999 9999998888 54 44443 46777655

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.85  E-value=8e-22  Score=180.98  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=97.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh---------HH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE   60 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~---------~~   60 (248)
                      -+++|+||||||||||+++|+|+++ ++|+|.++|.+...       ..+.| +     ...++++++.         +.
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~  126 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW  126 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence            4689999999999999999999998 89999999987632       12222 1     1248888874         67


Q ss_pred             HHHHHhCCCCCCchhhhH---------HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           61 DVMEELGLGPNGGLIYCM---------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        61 ~~m~~~~L~~~~~~~~~~---------~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      ++++.+++.+.......-         ..+++++  +++||++|+.  +|+++||||||+ ||+..+..+. +.++++. 
T Consensus       127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~-  202 (390)
T 3gd7_A          127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF-  202 (390)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred             HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence            788888886432222110         0156654  4999999999  999999999999 9999998888 7777753 


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      .+.+++++
T Consensus       203 ~~~tvi~v  210 (390)
T 3gd7_A          203 ADCTVILC  210 (390)
T ss_dssp             TTSCEEEE
T ss_pred             CCCEEEEE
Confidence            46777766

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.85  E-value=3.1e-21  Score=186.16  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L   68 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+. ...  -.+.....+..++++++.            +.++++.+++
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l  461 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI  461 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999998751 111  012222234456666542            4567889999


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025795           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI  144 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~  144 (248)
                      .+.....  ...+++++  +++||++|+.  +|+++||||||+ ||+.++..+. ++++++. +.|.++++|    +|..
T Consensus       462 ~~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~  532 (607)
T 3bk7_A          462 IDLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV  532 (607)
T ss_dssp             TTTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred             chHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence            7654443  34566654  4999999999  999999999999 9999999999 9999986 468888766    5655


Q ss_pred             cChHHHHHH
Q 025795          145 TDVTKFISG  153 (248)
Q Consensus       145 ~d~~~~~s~  153 (248)
                      .....+++.
T Consensus       533 ~~~~~~adr  541 (607)
T 3bk7_A          533 LMIDYVSDR  541 (607)
T ss_dssp             HHHHHHCSE
T ss_pred             HHHHHhCCE
Confidence            544544443

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.84  E-value=3.7e-21  Score=184.82  Aligned_cols=130  Identities=17%  Similarity=0.115  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+.|++|++.           
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  449 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ  449 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence            4689999999999999999999999999999999987632       12222      11247888774           


Q ss_pred             HHHHHHHhCCCCC------Cchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGPN------GGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~~------~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      ++++++..++.+.      |-..   .....+++|+  +++|||++..  +|+++|+||||+ ||+.+...+. +.++++
T Consensus       450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~  526 (582)
T 3b60_A          450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL  526 (582)
T ss_dssp             HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence            3445555555321      0000   0012355554  4899999999  999999999999 9999999988 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      .+ |.+++++
T Consensus       527 ~~-~~tvi~i  535 (582)
T 3b60_A          527 QK-NRTSLVI  535 (582)
T ss_dssp             HT-TSEEEEE
T ss_pred             hC-CCEEEEE
Confidence            64 7787666

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=2.9e-21  Score=184.11  Aligned_cols=129  Identities=19%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE---------EEeccCCC---------CCCCCC-------Ccc---cChh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-------PVA---MDIR   54 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~y-------~~~---~~i~   54 (248)
                      -+++|+||||||||||+|+|+|+++|++|++         .+.|.+..         ...+.+       .+.   .+++
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~  127 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI  127 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence            4689999999999999999999999999984         23343211         001111       111   1565


Q ss_pred             hhh-------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           55 ELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        55 e~i-------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                      +++       .++++++.+|+.......  ...+++++  +++||++++.  +|++|||||||+ ||+.++..++ ++++
T Consensus       128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~  202 (538)
T 1yqt_A          128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR  202 (538)
T ss_dssp             HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence            554       278899999997654433  34566654  4999999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025795          125 HLKSRNFNVCAV  136 (248)
Q Consensus       125 ~l~~~~~~ii~v  136 (248)
                      ++++.|.++++|
T Consensus       203 ~l~~~g~tvi~v  214 (538)
T 1yqt_A          203 RLSEEGKSVLVV  214 (538)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHhcCCEEEEE
Confidence            997778888776

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.84  E-value=2.4e-21  Score=184.61  Aligned_cols=128  Identities=18%  Similarity=0.160  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE-----------EEeccCCCC----------------CCCCCCc---ccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA----------------ENFDYPV---AMD   52 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i-----------~i~~~d~~~----------------~~~~y~~---~~~   52 (248)
                      -+++|+||||||||||+|+|+|+++|++|++           .+.|.+...                +.+.+.+   ..+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT  105 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence            5799999999999999999999999999988           344433210                1111111   124


Q ss_pred             hhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        53 i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                      +++.+.       ++++++.+++.......  ...+++++  +++||++++.  +|+++||||||+ ||+.++..+. ++
T Consensus       106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~  180 (538)
T 3ozx_A          106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA  180 (538)
T ss_dssp             HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred             HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence            555442       78899999997654433  34566654  4999999999  999999999999 9999999998 99


Q ss_pred             HHHHHhCCCeEEEE
Q 025795          123 VDHLKSRNFNVCAV  136 (248)
Q Consensus       123 l~~l~~~~~~ii~v  136 (248)
                      ++++++ |.++++|
T Consensus       181 l~~l~~-g~tii~v  193 (538)
T 3ozx_A          181 IRELLK-NKYVIVV  193 (538)
T ss_dssp             HHHHCT-TSEEEEE
T ss_pred             HHHHhC-CCEEEEE
Confidence            999965 8888766

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.84  E-value=4.4e-21  Score=184.29  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     +.|++|++.           
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  449 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ  449 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence            3689999999999999999999999999999999977532       22333 11     237777764           


Q ss_pred             HHHHHHHhCCCCCCchh---------hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~---------~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      ++++++..++.+.....         .....+++|+  +++|||++..  +|+++|+||||+ ||+.+...+. +.++++
T Consensus       450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~  526 (582)
T 3b5x_A          450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL  526 (582)
T ss_pred             HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence            34556666553210000         0012355554  4899999999  999999999999 9999999988 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      .+ |.+++++
T Consensus       527 ~~-~~tvi~i  535 (582)
T 3b5x_A          527 QK-NKTVLVI  535 (582)
T ss_pred             cC-CCEEEEE
Confidence            54 7787665

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.84  E-value=2.8e-21  Score=186.49  Aligned_cols=129  Identities=20%  Similarity=0.239  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE---------EEeccCCC---------C-------CCCCCCc---ccChh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------A-------ENFDYPV---AMDIR   54 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i---------~i~~~d~~---------~-------~~~~y~~---~~~i~   54 (248)
                      -+++|+||||||||||+++|+|+++|++|++         .+.|.+..         .       +.+...+   ..+++
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~  197 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR  197 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence            4689999999999999999999999999985         23343221         0       1111111   12566


Q ss_pred             hhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        55 e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                      +++.       ++++++.+|+.......  ...+++++  +++||++|+.  +|++|||||||+ ||+.++..++ ++++
T Consensus       198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~  272 (607)
T 3bk7_A          198 ELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIR  272 (607)
T ss_dssp             HHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred             HHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence            6652       78899999997654333  34566654  4999999999  999999999999 9999999999 9999


Q ss_pred             HHHhCCCeEEEE
Q 025795          125 HLKSRNFNVCAV  136 (248)
Q Consensus       125 ~l~~~~~~ii~v  136 (248)
                      ++.+.|.++++|
T Consensus       273 ~l~~~g~tvIiv  284 (607)
T 3bk7_A          273 RLANEGKAVLVV  284 (607)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHhcCCEEEEE
Confidence            997778888776

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.84  E-value=3e-21  Score=183.96  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y~~~~~i~e~i~------------~~~~m~~~~L   68 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.+. ...+  .+.....+..++.+++.            ++++++.+++
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l  391 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI  391 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999998751 1110  12222224456665542            3455667777


Q ss_pred             CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025795           69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI  144 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~  144 (248)
                      .+.....  ...++++.  +++||++++.  +|++||+||||+ ||+.++..+. ++++++. +.|.++++|    +|..
T Consensus       392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~  462 (538)
T 1yqt_A          392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV  462 (538)
T ss_dssp             GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred             hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence            6443332  34566654  4999999999  999999999999 9999999999 9999986 358888766    5666


Q ss_pred             cChHHHHHHH
Q 025795          145 TDVTKFISGC  154 (248)
Q Consensus       145 ~d~~~~~s~~  154 (248)
                      .....+++.+
T Consensus       463 ~~~~~~~drv  472 (538)
T 1yqt_A          463 LMIDYVSDRL  472 (538)
T ss_dssp             HHHHHHCSEE
T ss_pred             HHHHHhCCEE
Confidence            5555555433

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.83  E-value=3.8e-21  Score=170.13  Aligned_cols=129  Identities=19%  Similarity=0.108  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh--------HHHHHHHhCCCC---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGP---   70 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~--------~~~~m~~~~L~~---   70 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .+++|++.        +.++++..++..   
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~  143 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS  143 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence            4689999999999999999999999999999987620 1112222223 37888763        233444444421   


Q ss_pred             ---CCch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025795           71 ---NGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV  136 (248)
Q Consensus        71 ---~~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v  136 (248)
                         .+..   ......+++++  +++||++++.  +|+++|+||||+ ||+.++..++ ++ ++++. .|.+++++
T Consensus       144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv  215 (290)
T 2bbs_A          144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV  215 (290)
T ss_dssp             TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred             hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence               1000   00012455554  4899999999  999999999999 9999998888 54 44443 47777665

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.83  E-value=1.7e-20  Score=180.02  Aligned_cols=130  Identities=16%  Similarity=0.143  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.|      ..+.|++|++.          +
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~  447 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV  447 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999987632       12222      12348898885          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-..   .....+++++  +++|||++..  +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus       448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~  524 (578)
T 4a82_A          448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS  524 (578)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence            4455554442      111000   0012355554  4899999999  999999999999 9999998888 8888874


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       ++.+++++
T Consensus       525 -~~~t~i~i  532 (578)
T 4a82_A          525 -KDRTTLIV  532 (578)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCEEEEE
Confidence             46777655

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=3.2e-21  Score=185.86  Aligned_cols=135  Identities=15%  Similarity=0.179  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.      +..+.|++|++.          +
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~  461 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI  461 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999987642       1122      222458888875          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-..   .....+++|+  +++|||++..  +|+++|+||||+ ||+.+...+. +.++++.
T Consensus       462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~  538 (598)
T 3qf4_B          462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM  538 (598)
T ss_dssp             HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence            3344333332      111000   0012355554  4899999999  999999999999 9999999998 8888885


Q ss_pred             hCCCeEEEEEeccccccc
Q 025795          128 SRNFNVCAVYLLDSQFIT  145 (248)
Q Consensus       128 ~~~~~ii~v~l~d~~~~~  145 (248)
                       +|.++++|    +|...
T Consensus       539 -~~~t~i~i----tH~l~  551 (598)
T 3qf4_B          539 -EGKTSIII----AHRLN  551 (598)
T ss_dssp             -TTSEEEEE----SCCTT
T ss_pred             -CCCEEEEE----ecCHH
Confidence             57888766    45553

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.5e-20  Score=181.25  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE------EEeccCCCCCCCCCCcccChhhhhh------------HHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM------HIVNLDPAAENFDYPVAMDIRELIS------------LEDVME   64 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i------~i~~~d~~~~~~~y~~~~~i~e~i~------------~~~~m~   64 (248)
                      -+++|+||||||||||+++|+|+++|++|+.      .+..+     ........++++++.            ++++++
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q-----~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~  453 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ-----KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVK  453 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECS-----SCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecc-----cccccCCccHHHHHHHHhhcccccHHHHHHHHH
Confidence            3689999999999999999999999999962      22211     111112235555432            567889


Q ss_pred             HhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecc
Q 025795           65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLD  140 (248)
Q Consensus        65 ~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d  140 (248)
                      .+++.+.....  ...++++  ++++||++|+.  +|++||+||||+ ||+.++..++ ++++++. +.|.++++|    
T Consensus       454 ~l~l~~~~~~~--~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv----  524 (608)
T 3j16_B          454 PLRIDDIIDQE--VQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV----  524 (608)
T ss_dssp             HHTSTTTSSSB--SSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----
T ss_pred             HcCChhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----
Confidence            99998765443  2346665  45999999999  999999999999 9999999999 9999985 458888766    


Q ss_pred             cccccChHHHHHHHH
Q 025795          141 SQFITDVTKFISGCM  155 (248)
Q Consensus       141 ~~~~~d~~~~~s~~l  155 (248)
                      +|.+.....+++.++
T Consensus       525 tHdl~~~~~~aDrvi  539 (608)
T 3j16_B          525 EHDFIMATYLADKVI  539 (608)
T ss_dssp             CSCHHHHHHHCSEEE
T ss_pred             eCCHHHHHHhCCEEE
Confidence            566655555555443

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=4e-20  Score=177.89  Aligned_cols=130  Identities=17%  Similarity=0.188  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.|      ..+.|++|++.          +
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~  449 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI  449 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence            4689999999999999999999999999999999987642       11222      12347888875          3


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.|-..   .....+++++  +++|||++..  +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus       450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~  526 (587)
T 3qf4_A          450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRYT  526 (587)
T ss_dssp             HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHHS
T ss_pred             HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhC
Confidence            3344443331      111000   0012355554  4899999999  999999999999 9999999999 7788874


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       +|.|+++|
T Consensus       527 -~~~tvi~i  534 (587)
T 3qf4_A          527 -KGCTTFII  534 (587)
T ss_dssp             -TTCEEEEE
T ss_pred             -CCCEEEEE
Confidence             47787666

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.1e-20  Score=182.26  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC-------CCC------CCCc---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV---------   49 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~-------~~~------~y~~---------   49 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.           +.|.+...       +.+      .|..         
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP  183 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence            37899999999999999999999999999972           22221100       000      0100         


Q ss_pred             ccChhhhh---------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795           50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP  117 (248)
Q Consensus        50 ~~~i~e~i---------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~  117 (248)
                      ..++.+.+         .++++++.+|+.......  ...+++++  +++||++++.  +|+++||||||+ ||+.++..
T Consensus       184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~  259 (608)
T 3j16_B          184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN  259 (608)
T ss_dssp             SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence            01222222         377889999997654333  34566654  4999999999  999999999999 99999999


Q ss_pred             HHHHHHHHHHhCCCeEEEE
Q 025795          118 VLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus       118 ~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++ +++++++++|.++++|
T Consensus       260 l~-~~l~~l~~~g~tvi~v  277 (608)
T 3j16_B          260 AA-QIIRSLLAPTKYVICV  277 (608)
T ss_dssp             HH-HHHHGGGTTTCEEEEE
T ss_pred             HH-HHHHHHHhCCCEEEEE
Confidence            98 9999998778888766

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.77  E-value=8.2e-18  Score=144.54  Aligned_cols=233  Identities=22%  Similarity=0.411  Sum_probs=159.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      ..++++.|+.|+||||++..++..+. .+.++.+.+.||+....++.+..++++..+.++++.. ++++++....+.+..
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL   91 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence            47889999999999999999998887 6778999999998777777666777777777777766 677776555443333


Q ss_pred             hhhHHHHHHHHHccCC-CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~-~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      .... .++...+.... +.+++|+|.|++.+......+...+.+.+   .. .++++++|+....++..+..........
T Consensus        92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~  166 (262)
T 1yrb_A           92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI  166 (262)
T ss_dssp             HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred             hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence            2222 33333332210 46999999999988776555443333333   22 5567789988888888776554444444


Q ss_pred             HHhhCCCeeeeecccccccch--hhhhhhcccCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH-
Q 025795          161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES-  235 (248)
Q Consensus       161 ~~~~~~p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~-  235 (248)
                      ....+.|.+.|+||+|+....  ..+.+++. +.+.+.+.+.. +...+|.++  ++++++++++. ..|+|++..+++ 
T Consensus       167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g  243 (262)
T 1yrb_A          167 DLRLGATTIPALNKVDLLSEEEKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG  243 (262)
T ss_dssp             HHHHTSCEEEEECCGGGCCHHHHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred             hcccCCCeEEEEecccccccccHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence            456789999999999997654  12233332 33333333321 233466665  88899999887 489999999988 


Q ss_pred             -HHHHHHHhh
Q 025795          236 -RRLLSQIMK  244 (248)
Q Consensus       236 -~~~~~~id~  244 (248)
                       ..++..|.+
T Consensus       244 i~~l~~~i~~  253 (262)
T 1yrb_A          244 FEDLETLAYE  253 (262)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             788877765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.75  E-value=6.9e-18  Score=164.45  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCcHHHHH---------------------HHHHhCCCCC-------CceEEEeccCCCC---CCCC-----
Q 025795            3 YAQLVIGPAGSGKSTYC---------------------SSLYRHCETV-------RRTMHIVNLDPAA---ENFD-----   46 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~---------------------~~l~g~l~~~-------~G~i~i~~~d~~~---~~~~-----   46 (248)
                      -+++|+||||||||||+                     +++.|+.+|+       .|.+.+.+.+...   ..+.     
T Consensus        45 e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~  124 (670)
T 3ux8_A           45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEI  124 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeech
Confidence            46899999999999998                     8888988888       4555555543211   0000     


Q ss_pred             ---------------------CCcccChhhhhhH------------------------HHHHHHhCCCCCCchhhhHHhh
Q 025795           47 ---------------------YPVAMDIRELISL------------------------EDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus        47 ---------------------y~~~~~i~e~i~~------------------------~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                                           ..+.+++++++..                        .++++.+|+++.....+ ...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~L  203 (670)
T 3ux8_A          125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS-AGTL  203 (670)
T ss_dssp             C-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCB-GGGS
T ss_pred             hhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCC-cccC
Confidence                                 0112345544321                        12377788875421111 2456


Q ss_pred             hhhH--HHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~--~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++++  +++||++|+.  +|+  +||+||||+ ||+.++..++ +++++++++|.++++|
T Consensus       204 SGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v  260 (670)
T 3ux8_A          204 SGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV  260 (670)
T ss_dssp             CHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence            6654  4999999999  888  999999999 9999999999 9999998778888776

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.74  E-value=5.7e-18  Score=175.76  Aligned_cols=127  Identities=20%  Similarity=0.219  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC------CCCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF------DYPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~------~y~~~~~i~e~i~----------~   59 (248)
                      -.++|+||+||||||++++|.|+++|++|+|.++|.|...       +.+      ++-.+-||+|+|.          +
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v  524 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM  524 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred             cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence            3689999999999999999999999999999999987643       122      3334568999885          3


Q ss_pred             HHHHHHhCC---------------CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795           60 EDVMEELGL---------------GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN  121 (248)
Q Consensus        60 ~~~m~~~~L---------------~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~  121 (248)
                      .++++..++               |++|      ..+++|+  |++||||+..  +|+++||||||+ ||..+.+.+. +
T Consensus       525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~  595 (1321)
T 4f4c_A          525 VAACKMANAEKFIKTLPNGYNTLVGDRG------TQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-Q  595 (1321)
T ss_dssp             HHHHHHTTCHHHHHHSTTTTSSEESSSS------CCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-H
T ss_pred             HHHHHHccchhHHHcCCCCCccEecCCC------CCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-H
Confidence            444444332               2333      2355554  5899999999  999999999999 9999987777 7


Q ss_pred             HHHHHHhCCCeEEEE-Eec
Q 025795          122 FVDHLKSRNFNVCAV-YLL  139 (248)
Q Consensus       122 ll~~l~~~~~~ii~v-~l~  139 (248)
                      .++++.+ |+|+++| |-+
T Consensus       596 ~l~~~~~-~~T~iiiaHrl  613 (1321)
T 4f4c_A          596 ALDKAAK-GRTTIIIAHRL  613 (1321)
T ss_dssp             HHHHHHT-TSEEEEECSCT
T ss_pred             HHHHHhC-CCEEEEEcccH
Confidence            7787754 6676655 433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.73  E-value=3.9e-18  Score=176.98  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -.+||+||+||||||++++|.|++.|++|+|.++|.|...       +.+.|      -.+-|||+++.           
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence            3689999999999999999999999999999999998753       22333      22347888863           


Q ss_pred             -HHHHHHHhCCC------CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 -LEDVMEELGLG------PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 -~~~~m~~~~L~------~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                       +.++++..++.      |.|-....   -..+++|+  +.+||||+..  +|++|||||||+ ||..+.+.+. +.+++
T Consensus      1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A         1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp             HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred             HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence             45556555542      11100000   02245544  4899999999  999999999999 9999987777 66666


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      +. .+.|+++|
T Consensus      1263 ~~-~~~TvI~I 1272 (1321)
T 4f4c_A         1263 AR-EGRTCIVI 1272 (1321)
T ss_dssp             TS-SSSEEEEE
T ss_pred             Hc-CCCEEEEe
Confidence            53 47787766

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.73  E-value=5e-18  Score=175.80  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|.|+++|++|+|.++|.|...       +.+.      +..+-||+|++.          +
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~  496 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI  496 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence            4689999999999999999999999999999999987532       1122      222348888885          2


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.+...   .....+++++  +++|||++..  +|+++||||||+ ||+.+.+.+. +.++.+.
T Consensus       497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~  573 (1284)
T 3g5u_A          497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR  573 (1284)
T ss_dssp             HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc
Confidence            3333333221      111000   0012355554  4899999999  999999999999 9999988777 7777764


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                       +|.|+++|
T Consensus       574 -~~~t~i~i  581 (1284)
T 3g5u_A          574 -EGRTTIVI  581 (1284)
T ss_dssp             -TTSEEEEE
T ss_pred             -CCCEEEEE
Confidence             47777766

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.72  E-value=8.6e-18  Score=174.03  Aligned_cols=130  Identities=15%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -+++|+||||||||||+++|.|+++|++|+|.++|.|...       ..+.|      ..+.||+|++.           
T Consensus      1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence            4689999999999999999999999999999999988642       22333      12457888873           


Q ss_pred             -HHHHHHHhCCC------CCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 -LEDVMEELGLG------PNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 -~~~~m~~~~L~------~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                       +.+.++..++.      |.+-...   .-..+++|  ++++|||++..  +|++||+||||+ ||+.+.+.+. +.+++
T Consensus      1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A         1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp             HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence             33444444432      1110000   00235554  44999999999  999999999999 9999998888 88877


Q ss_pred             HHhCCCeEEEE
Q 025795          126 LKSRNFNVCAV  136 (248)
Q Consensus       126 l~~~~~~ii~v  136 (248)
                      + ..|.++++|
T Consensus      1217 ~-~~~~tvi~i 1226 (1284)
T 3g5u_A         1217 A-REGRTCIVI 1226 (1284)
T ss_dssp             H-SSSSCEEEE
T ss_pred             h-CCCCEEEEE
Confidence            6 457888766

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=1.4e-18  Score=146.63  Aligned_cols=125  Identities=17%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc--CC--CCCCCCCCcccChhhhh-hH-HHHHHHh-CCCCCCchh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDYPVAMDIRELI-SL-EDVMEEL-GLGPNGGLI   75 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~--d~--~~~~~~y~~~~~i~e~i-~~-~~~m~~~-~L~~~~~~~   75 (248)
                      -+++|+||||||||||+++|+|+ +|++|+|.....  +.  ....+.|.+. +.++++ .. ......+ +.... ...
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q-~~~enl~~~~~~~~~~~~~~~~~-~~~   99 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPG-TLNEKIDPYLRPLHDALRDMVEP-EVI   99 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCT-THH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecC-CHHHHHHHHHHHHHHHHHHhccH-HHH
Confidence            36899999999999999999999 999999854211  11  1234555221 113333 11 0011111 10010 111


Q ss_pred             -hhHHh-hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795           76 -YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY  137 (248)
Q Consensus        76 -~~~~~-l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~  137 (248)
                       ..++. +.++++++||++++.  +|+++|+||||+-   ++..+. ++++++ +.|.++++.|
T Consensus       100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tiivtH  156 (208)
T 3b85_A          100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMVVTG  156 (208)
T ss_dssp             HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEEEEE
T ss_pred             HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEEEEC
Confidence             00111 122344899999999  9999999999987   677777 777777 5677877334

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.70  E-value=1.2e-17  Score=167.73  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      ++++++.+|+.+..........+++|+  ++.||++++.  +|++|||||||+ ||+.+...+. +.+++   .+.++++
T Consensus       880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~~---~g~tVIi  953 (986)
T 2iw3_A          880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALKE---FEGGVII  953 (986)
T ss_dssp             HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHHS---CSSEEEE
T ss_pred             HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHHH---hCCEEEE
Confidence            567788888864210111134566664  4899999999  999999999999 9999987766 55443   3567765


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      |
T Consensus       954 I  954 (986)
T 2iw3_A          954 I  954 (986)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.68  E-value=1.1e-16  Score=160.66  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh-CCC--C--CCceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGL   68 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g-~l~--~--~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L   68 (248)
                      -+++|+||||||||||+|+|+| .+.  +  ....+.+...++    ....+.+++.+++.         +.++++.+|+
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL  537 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF  537 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence            4689999999999999999994 221  0  011122221111    11234556776653         6678899998


Q ss_pred             CC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           69 GP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        69 ~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .. ....  ....+++|+  +++||++++.  +|++|||||||+ ||+.++..+. +++++   .|.+++++
T Consensus       538 ~~~~~~~--~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv  601 (986)
T 2iw3_A          538 TDEMIAM--PISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI  601 (986)
T ss_dssp             CHHHHHS--BGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE
T ss_pred             ChhhhcC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE
Confidence            52 2111  134566664  4899999999  999999999999 9999998888 77776   47777766

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.67  E-value=8.2e-18  Score=136.99  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHccCCCCCEEEEeCCCc-cCHH----------------hHHHHHHHHHHHHHhCCCeEEEE
Q 025795           84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        84 ~~~~~La~~l~~~~~p~~lilDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++++||+++..  +|+++++|||++ ||+.                .+..+. +++++++++|.+++++
T Consensus        89 ~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~v  155 (171)
T 4gp7_A           89 KPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYI  155 (171)
T ss_dssp             HHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEE
T ss_pred             HHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEE
Confidence            344899999999  999999999999 9999                556767 7777787668888766

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.66  E-value=3.3e-16  Score=152.58  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=56.8

Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                      ..+.++.++++......+ ...+++++  +++||++|+.  +|   ++||+||||+ ||+.+...++ ++++++++.|.+
T Consensus       523 ~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t  598 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT  598 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred             HHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence            456677788864321111 24566654  4999999988  66   5999999999 9999999999 999999877888


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      +++|
T Consensus       599 vi~v  602 (670)
T 3ux8_A          599 VLVI  602 (670)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.65  E-value=1.5e-17  Score=153.54  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCC----CCCcccChhhhh-------hHHHHHHHhCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN   71 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~----~y~~~~~i~e~i-------~~~~~m~~~~L~~~   71 (248)
                      .+++|+||||||||||+|+|+|+.+|++|+|.+.|.+......    +..+.++++|+.       .++++++.+++...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            4799999999999999999999999999999988765421110    112233444332       37889999988754


Q ss_pred             CchhhhHHhhh----hhHHHHHHHHHccC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-----hCC---
Q 025795           72 GGLIYCMEHLE----DNLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN---  130 (248)
Q Consensus        72 ~~~~~~~~~l~----~~~~~~La~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-----~~~---  130 (248)
                      .....    ++    ..+++.+|+++...        ++|+++++||||+ +|+..+..+. ++++++.     +.|   
T Consensus       150 ~~~~~----lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~  224 (413)
T 1tq4_A          150 DFFII----ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE  224 (413)
T ss_dssp             SEEEE----EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred             CCeEE----eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence            32221    22    23458888888762        2688999999999 9999999988 7788774     333   


Q ss_pred             CeEEEEEecccccccC--hHHHHHHHHH
Q 025795          131 FNVCAVYLLDSQFITD--VTKFISGCMA  156 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d--~~~~~s~~l~  156 (248)
                      .+++   ++++|...+  ...+++.+.-
T Consensus       225 ~~ii---liSsh~l~~~~~e~L~d~I~~  249 (413)
T 1tq4_A          225 PPIF---LLSNKNVCHYDFPVLMDKLIS  249 (413)
T ss_dssp             CCEE---ECCTTCTTSTTHHHHHHHHHH
T ss_pred             CcEE---EEecCcCCccCHHHHHHHHHH
Confidence            2332   467777765  6776665543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.62  E-value=5.6e-17  Score=151.76  Aligned_cols=120  Identities=15%  Similarity=0.155  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc-e-EEEeccCCCCCCCCC-C---------cccChhhhhh-------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-P---------VAMDIRELIS-------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~-i~i~~~d~~~~~~~y-~---------~~~~i~e~i~-------------   58 (248)
                      +++|+||||||||||+|+|+|+++|++| + |.+++ ++. +.+.| +         ..+++++++.             
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~  217 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN  217 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence            5899999999999999999999999999 8 99887 442 22322 1         1234554331             


Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHH--HccCCCCCE----EEEeC-CCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~--l~~~~~p~~----lilDE-Pt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                      +.++++.+|+.....    ...+++++  ++++|++  ++.  +|++    +|+|| |++ ||+. ...+. +++++   
T Consensus       218 ~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~---  286 (460)
T 2npi_A          218 KQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK---  286 (460)
T ss_dssp             BCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---
T ss_pred             HHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---
Confidence            223344455543321    23455544  4889999  999  9999    99999 999 9998 33333 44443   


Q ss_pred             CCCeEEEE
Q 025795          129 RNFNVCAV  136 (248)
Q Consensus       129 ~~~~ii~v  136 (248)
                      .+.++++|
T Consensus       287 ~~~tviiV  294 (460)
T 2npi_A          287 LNVNIMLV  294 (460)
T ss_dssp             TTCCEEEE
T ss_pred             hCCCEEEE
Confidence            35666555

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.61  E-value=3.5e-16  Score=128.65  Aligned_cols=125  Identities=10%  Similarity=0.052  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-------CCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCchh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI   75 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-------~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~   75 (248)
                      .++|+||||||||||+++|+|++.     +.+.|.+.       ....++| .++.+..+.+     +..++..+.....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~   71 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG   71 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence            578999999999999999999985     33344322       1122333 1121222221     1111221110000


Q ss_pred             hhHHhhhhhH--HHHHHHH-----HccCCCCCEEEEeC--CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025795           76 YCMEHLEDNL--DDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT  145 (248)
Q Consensus        76 ~~~~~l~~~~--~~~La~~-----l~~~~~p~~lilDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~  145 (248)
                      .....+++++  ++.+|++     +..  +|+++|+||  |++ +|+..+..+. +++++   .+.+++++ .+.+|...
T Consensus        72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~~---~~~~~i~~-~H~~h~~~  144 (178)
T 1ye8_A           72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMHD---PNVNVVAT-IPIRDVHP  144 (178)
T ss_dssp             TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHTC---TTSEEEEE-CCSSCCSH
T ss_pred             ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHhc---CCCeEEEE-EccCCCch
Confidence            0012344443  4788986     888  999999999  999 9998886666 54433   45545444 22355443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.60  E-value=2.4e-15  Score=133.53  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhhhHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLE   60 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~-------~~~i~e~i~~~   60 (248)
                      +.+++++|||||||||+++.|+|+++|++|+|.+.|.|...             ..++| ++       ..++++.+...
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~  179 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG  179 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999988632             12343 21       22344554321


Q ss_pred             H-------HHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795           61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR  129 (248)
Q Consensus        61 ~-------~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~  129 (248)
                      .       +++..|+.+....  .+..++ ++++.+|+++..  +|+  ++++| ||+ +|+....       +++. +.
T Consensus       180 ~~~~~d~~lldt~gl~~~~~~--~~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~  246 (302)
T 3b9q_A          180 KEEGYDVVLCDTSGRLHTNYS--LMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV  246 (302)
T ss_dssp             HHTTCSEEEECCCCCSSCCHH--HHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred             HHcCCcchHHhcCCCCcchhH--HHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhc
Confidence            1       1222344333222  234455 455899999998  999  99999 999 9987542       3343 34


Q ss_pred             CCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeee
Q 025795          130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  171 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~v  171 (248)
                      |.+++++.-+|...  ...       ...+.....+.|...+
T Consensus       247 g~t~iiiThlD~~~--~~g-------~~l~~~~~~~~pi~~i  279 (302)
T 3b9q_A          247 GITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFI  279 (302)
T ss_dssp             CCCEEEEECCSSCS--CTH-------HHHHHHHHHCCCEEEE
T ss_pred             CCCEEEEeCCCCCC--ccC-------hheehHHHHCCCEEEE
Confidence            77766553245431  111       1234445667888643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.56  E-value=1.2e-14  Score=131.99  Aligned_cols=148  Identities=14%  Similarity=0.157  Sum_probs=94.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhhhHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLE   60 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~-------~~~i~e~i~~~   60 (248)
                      +.+++|+|||||||||+++.|+|+++|.+|+|.+.+.|...             ..++| ++       ..++++.+...
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~  236 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG  236 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence            36899999999999999999999999999999999988632             12333 22       12344544321


Q ss_pred             H-------HHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795           61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR  129 (248)
Q Consensus        61 ~-------~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~  129 (248)
                      .       +++..|+.+....  .+..++ ++++.+++++..  +|+  ++++| ||+ +|+..+.       +.+. +.
T Consensus       237 ~~~~~d~~lldt~Gl~~~~~~--~~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~  303 (359)
T 2og2_A          237 KEEGYDVVLCDTSGRLHTNYS--LMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV  303 (359)
T ss_dssp             HHTTCSEEEEECCCCSSCCHH--HHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred             HhCCCHHHHHHhcCCChhhhh--HHHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhc
Confidence            1       1222344333222  234455 455899999999  999  99999 999 9987652       2333 34


Q ss_pred             CCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeee
Q 025795          130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI  171 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~v  171 (248)
                      |.+++++.-+|..  ....       ..++.....+.|...+
T Consensus       304 g~t~iiiThlD~~--~~gG-------~~lsi~~~~~~pI~~i  336 (359)
T 2og2_A          304 GITGLILTKLDGS--ARGG-------CVVSVVEELGIPVKFI  336 (359)
T ss_dssp             CCCEEEEESCTTC--SCTH-------HHHHHHHHHCCCEEEE
T ss_pred             CCeEEEEecCccc--cccc-------HHHHHHHHhCCCEEEE
Confidence            7776655224542  1111       2234455678888654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.55  E-value=6.4e-15  Score=146.33  Aligned_cols=73  Identities=25%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             HHHHHHHhCCCCCC-chhhhHHhhhhh--HHHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795           59 LEDVMEELGLGPNG-GLIYCMEHLEDN--LDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (248)
Q Consensus        59 ~~~~m~~~~L~~~~-~~~~~~~~l~~~--~~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (248)
                      +.++++.+||+... ...  ...++++  +++.||++|+.  +   |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus       710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~  784 (842)
T 2vf7_A          710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN  784 (842)
T ss_dssp             HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            46788899998632 222  2456665  34889999988  6   69999999999 9999999999 99999987888


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      ++++|
T Consensus       785 tVIvi  789 (842)
T 2vf7_A          785 TVIAV  789 (842)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88766

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.52  E-value=3e-15  Score=144.49  Aligned_cols=156  Identities=17%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCC----------CCCCCC-------CcccChhhhhhHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-------PVAMDIRELISLEDVMEEL   66 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~----------~~~~~y-------~~~~~i~e~i~~~~~m~~~   66 (248)
                      ++|+||||||||||+++|+|+..| ++|.|.+.|.+..          ...++|       .+..++++++..  ....+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~  125 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI  125 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence            799999999999999999999988 7999999887631          112233       223345554432  12222


Q ss_pred             CCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCC------Cc-cCHHhHHHHHHHHHHHHHhCCCeE-EEEEe
Q 025795           67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFNV-CAVYL  138 (248)
Q Consensus        67 ~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEP------t~-LD~~~~~~~~~~ll~~l~~~~~~i-i~v~l  138 (248)
                      +....+        .+... ..++.....  .|+++++|||      |+ +|+.....+. ++++++.+.+.++ +++.-
T Consensus       126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt  193 (608)
T 3szr_A          126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVP  193 (608)
T ss_dssp             HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEE
T ss_pred             cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEe
Confidence            211111        00000 111112223  7999999999      88 9999998888 8898875443333 22222


Q ss_pred             cccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccc
Q 025795          139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (248)
Q Consensus       139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~  180 (248)
                      +|.......      ++-.....-..+.+.+-|++|.|++.+
T Consensus       194 ~~~d~a~~~------~l~la~~v~~~g~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          194 SNVDIATTE------ALSMAQEVDPEGDRTIGILTKPDLVDK  229 (608)
T ss_dssp             SSSCTTTCH------HHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred             ccchhccHH------HHHHHHHHhhcCCceEEEecchhhcCc
Confidence            222222111      111122223456789999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.52  E-value=3.4e-14  Score=123.53  Aligned_cols=116  Identities=19%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcc-cC-hhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MD-IRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~-~~-i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      -+++|+|||||||||++++|+|+++|. +|+|.++|.+....    .+. .. +.+        ..+|+.+         
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q--------~~~gl~~---------   84 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQ--------REVGEDT---------   84 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEE--------EEBTTTB---------
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeH--------HHhCCCH---------
Confidence            468999999999999999999999997 99999998764211    111 00 000        1223322         


Q ss_pred             hhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795           80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus        80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                         ..++..+++++..  +|+++++|||+  |+.+...+    ++.. +.|.+++++    +|.. +...+++.++.
T Consensus        85 ---~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t----~H~~-~~~~~~dri~~  144 (261)
T 2eyu_A           85 ---KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGT----LHTN-TAIDTIHRIVD  144 (261)
T ss_dssp             ---SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEE----ECCS-SHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEE----eCcc-hHHHHHHHHhh
Confidence               1245899999999  99999999999  87775433    3433 457777554    2332 24455554433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.52  E-value=4.9e-14  Score=126.47  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -.++|+||||||||||+++|+|+++|++|.|.+.|.+.    ....+   .++.+.         +-. +        ..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~---------~~~-g--------gg  226 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQ---------LFF-G--------GN  226 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEE---------EEC-B--------TT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEE---------EEe-C--------CC
Confidence            35899999999999999999999999999999987541    11110   011100         000 0        11


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      ..+++.|++++..  +|+++++|||++-      ++. ++++.+...+.+++++    +|... ....++.++.
T Consensus       227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t----~H~~~-~~~~~dri~~  286 (330)
T 2pt7_A          227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT----LHAGS-SEEAFIRLAN  286 (330)
T ss_dssp             BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE----EECSS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE----EcccH-HHHHhhhhee
Confidence            2455899999999  9999999999982      234 5677775433344443    23332 4455554444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.52  E-value=1.6e-14  Score=132.24  Aligned_cols=52  Identities=19%  Similarity=0.060  Sum_probs=44.4

Q ss_pred             hhhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++++  ++.||++++.  +|  ++|||||||+ ||+.+...+. ++++++. +|.++++|
T Consensus       296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i  352 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV  352 (415)
T ss_dssp             SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence            35554  3889999998  99  9999999999 9999999999 9999986 57788766

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.51  E-value=7.8e-14  Score=139.61  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795           59 LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN  132 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~  132 (248)
                      ..++++.+||+...... ....++++  +++.||++|+.  +|   +++||||||+ ||+.+...++ ++++++.+.|.+
T Consensus       785 ~~~~L~~vGL~~~~lgq-~~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T  860 (916)
T 3pih_A          785 TLQVLHDVGLGYVKLGQ-PATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT  860 (916)
T ss_dssp             HHHHHHHTTGGGSBTTC-CSTTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred             HHHHHHHcCCchhhccC-CccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE
Confidence            45678888886431111 12346665  45899999987  54   7999999999 9999999999 999999878888


Q ss_pred             EEEE
Q 025795          133 VCAV  136 (248)
Q Consensus       133 ii~v  136 (248)
                      +++|
T Consensus       861 VIvI  864 (916)
T 3pih_A          861 VIVI  864 (916)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.51  E-value=6.4e-14  Score=140.09  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795           59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF  131 (248)
Q Consensus        59 ~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~  131 (248)
                      ..++++.+||+. ..+..  ...++++.  ++.||++|+.  +   |+++||||||+ ||+.++..++ ++++++.+.|.
T Consensus       825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~  899 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD  899 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            356788899986 22222  24466654  4899999997  5   59999999999 9999999999 99999987888


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      ++++|
T Consensus       900 TVIvi  904 (972)
T 2r6f_A          900 TVLVI  904 (972)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88766

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.49  E-value=3.2e-15  Score=130.71  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -|.++|+||||||||||+++|+|...|++|++.+.|.+.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i   40 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI   40 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence            378999999999999999999999999999999988765

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.43  E-value=6.6e-13  Score=118.35  Aligned_cols=56  Identities=9%  Similarity=0.053  Sum_probs=42.9

Q ss_pred             HhhhhhHH--HHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           79 EHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        79 ~~l~~~~~--~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..++++++  ++||++++.  ..+|+++|+||||+ ||+.....+. ++++++. .+.+++++
T Consensus       218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~  278 (322)
T 1e69_A          218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI  278 (322)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence            34555543  788988862  11789999999999 9999999988 8888884 46677655

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.42  E-value=3.7e-15  Score=124.50  Aligned_cols=58  Identities=5%  Similarity=-0.050  Sum_probs=43.8

Q ss_pred             HHccCCCCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHH
Q 025795           92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus        92 ~l~~~~~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                      +++.  +|+++++|||++ +    |+..++.+. ++++++.+ .|.+++++    +|.+.+...+++.++.
T Consensus       137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV  200 (207)
T ss_dssp             EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred             EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence            4555  899999999987 7    677888887 88888864 57888655    6777777777766544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.41  E-value=5.3e-13  Score=111.69  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-------CCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-------~~G~i~i~~~d   39 (248)
                      -+++|+||||||||||++.|+|...+       .+|.+++.+.+
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            57899999999999999999996554       34466666543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.39  E-value=8.6e-13  Score=117.17  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=87.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc------ccChhhhhhHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV------AMDIRELISLEDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~------~~~i~e~i~~~~~   62 (248)
                      .+++|+|||||||||+++.|+|+++|++|+|.+.+.|+..             ..++| ++      ..++++.+.....
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~  182 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA  182 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999988632             12444 22      1234444432111


Q ss_pred             H-------HHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHh-CCCeEE
Q 025795           63 M-------EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC  134 (248)
Q Consensus        63 m-------~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii  134 (248)
                      -       +..|..+..  ...++.++ +++..+|+++..  +|+.+++    .||+.+...++ +.++.+.+ .+.+++
T Consensus       183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i  252 (304)
T 1rj9_A          183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV  252 (304)
T ss_dssp             HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred             CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence            0       011221111  11233343 345889999999  9994333    34444444445 45555543 367766


Q ss_pred             EEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795          135 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  172 (248)
Q Consensus       135 ~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl  172 (248)
                      ++.-.|...  ...     .+  .+....++.|...+-
T Consensus       253 ivTh~d~~a--~gg-----~~--l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          253 IVTKLDGTA--KGG-----VL--IPIVRTLKVPIKFVG  281 (304)
T ss_dssp             EEECTTSSC--CCT-----TH--HHHHHHHCCCEEEEE
T ss_pred             EEECCcccc--ccc-----HH--HHHHHHHCCCeEEEe
Confidence            553234321  111     11  234445778886553

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.37  E-value=1.5e-12  Score=103.78  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      .++|+||||||||||++++++.+.+ +|  .+++.+.+....                                      
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~--------------------------------------   78 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT--------------------------------------   78 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence            5789999999999999999999877 45  455544322110                                      


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCe-EEEEEecccccccChHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l~d~~~~~d~~~~~s  152 (248)
                                ++..  +|+++++|||+.++......++ ++++.+.+.|.+ ++++.-.....+....++.|
T Consensus        79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S  137 (149)
T 2kjq_A           79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT  137 (149)
T ss_dssp             ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred             ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHH
Confidence                      1234  7999999999997766666666 888888766776 66554333333332244444

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.37  E-value=1.2e-12  Score=118.69  Aligned_cols=102  Identities=19%  Similarity=0.198  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      +++|+|||||||||+++++.|++++. +|.|...+ ||....  .......   +.      ....+..          .
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~--~~~~~~~---v~------q~~~~~~----------~  182 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV--HESKKCL---VN------QREVHRD----------T  182 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC--CCCSSSE---EE------EEEBTTT----------B
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh--hhccccc---ee------eeeeccc----------c
Confidence            68999999999999999999999987 56665543 432111  1000000   00      0001111          0


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+..+|+++|..  +|+++++|||+  |..+.     +.+.++.+.|.+++++
T Consensus       183 ~~~~~~La~aL~~--~PdvillDEp~--d~e~~-----~~~~~~~~~G~~vl~t  227 (356)
T 3jvv_A          183 LGFSEALRSALRE--DPDIILVGEMR--DLETI-----RLALTAAETGHLVFGT  227 (356)
T ss_dssp             SCHHHHHHHHTTS--CCSEEEESCCC--SHHHH-----HHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHhhh--CcCEEecCCCC--CHHHH-----HHHHHHHhcCCEEEEE
Confidence            1233588999999  99999999999  54443     3333445668887655

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.34  E-value=6.7e-14  Score=124.73  Aligned_cols=106  Identities=13%  Similarity=0.003  Sum_probs=67.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCC------CCCCCCc--cc-ChhhhhhHHHHHHHhCCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPV--AM-DIRELISLEDVMEELGLGP   70 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~------~~~~y~~--~~-~i~e~i~~~~~m~~~~L~~   70 (248)
                      +.++||+||||||||||+++|+|+++|..|  .+.+..+|...      +++.+..  .. .-.+.-.+.+.++.++ ..
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~  168 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG  168 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC
Confidence            368999999999999999999999998866  56666555321      1111100  00 0011112566777776 22


Q ss_pred             CCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCH
Q 025795           71 NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL  112 (248)
Q Consensus        71 ~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~  112 (248)
                      .....  ...++++++  +.+|++++.  +|+++|+|||+. .|.
T Consensus       169 ~~~~~--~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          169 SDYAC--APVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG  209 (312)
T ss_dssp             CSCEE--EEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred             cccCC--cccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence            22111  123445443  567778888  999999999998 764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.34  E-value=1.1e-12  Score=131.74  Aligned_cols=107  Identities=13%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHH--------HhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCch
Q 025795            3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL   74 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l--------~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~   74 (248)
                      -+++|+||||||||||+|.+        .|..-|..+.. + +         ..           +.++..+|+.++...
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~-~---------~~-----------d~i~~~ig~~d~l~~  720 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V-S---------IV-----------DCILARVGAGDSQLK  720 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E-E---------CC-----------SEEEEECC-------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c-h---------HH-----------HHHHHhcCchhhHHH
Confidence            46899999999999999999        66554443221 0 0         00           011112222221111


Q ss_pred             hhhHHhhhhhHHHHHHHHH--ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        75 ~~~~~~l~~~~~~~La~~l--~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                        ....++.++ ..+++++  +.  +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus       721 --~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a  781 (934)
T 3thx_A          721 --GVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA  781 (934)
T ss_dssp             ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             --hHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence              112344444 5666666  56  999999999999 9999998886588888875 47777655

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.33  E-value=4.4e-12  Score=115.17  Aligned_cols=54  Identities=9%  Similarity=0.003  Sum_probs=45.5

Q ss_pred             hhhhhH--HHHHHHHHc------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           80 HLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        80 ~l~~~~--~~~La~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .++++.  ++.||++++      .  +|+++|+||||+ ||+.+...++ ++++++.+.|.++++|
T Consensus       279 ~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~i  341 (365)
T 3qf7_A          279 GLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFI  341 (365)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            455554  378888887      6  999999999999 9999999999 8999987778888766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.30  E-value=1.9e-12  Score=122.66  Aligned_cols=121  Identities=15%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCce-EEEeccCCCCCCCCC--CcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~-i~i~~~d~~~~~~~y--~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      -+++|+||||||||||++.++|...+.+++ +++.+.++..+-...  ...++      ++++. ..|+.......  ..
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~~--p~  352 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCAY--PE  352 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCCC--GG
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEec--cc
Confidence            478999999999999999999998886443 455554432100000  00011      22222 22221111110  11


Q ss_pred             hhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHH-----hHHHHHHHHHHHHHhCCCeEEEE
Q 025795           80 HLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        80 ~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .++.  .+++.+++++..  +|+++|+| |++ +|..     .+..+. ++++.+++.|.+++++
T Consensus       353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilv  413 (525)
T 1tf7_A          353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFT  413 (525)
T ss_dssp             GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            2333  344788888888  99999999 999 9998     887877 8999998888888766

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.28  E-value=8.4e-12  Score=104.12  Aligned_cols=117  Identities=10%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCc---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG---------   73 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~---------   73 (248)
                      -+++|+||||||||||++.+++...+.+|.+.+.+.+...+.              +.+.+..++......         
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~   89 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS--------------IIRQAKQFNWDFEEYIEKKLIIID   89 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH--------------HHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH--------------HHHHHHHhcchHHHHhhCCEEEEe
Confidence            468999999999999999999988888889988875432110              000111111111000         


Q ss_pred             -------hhhhHHh-hhhhHHHHH-HHHHccCCCCC--EEEEeCCCc-c--CHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025795           74 -------LIYCMEH-LEDNLDDWL-AEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAV  136 (248)
Q Consensus        74 -------~~~~~~~-l~~~~~~~L-a~~l~~~~~p~--~lilDEPt~-L--D~~~~~~~~~~ll~~l~-~~~~~ii~v  136 (248)
                             ..+..+. -.+.+...+ +.....  +|+  ++++|||++ +  |+...+.++ +.++++. +.|.+++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~  164 (235)
T 2w0m_A           90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYAT  164 (235)
T ss_dssp             CCC----CTTBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEE
T ss_pred             ccccccCceeeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEE
Confidence                   0000000 001111222 222234  899  999999997 6  988888888 7777775 458777766

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.27  E-value=9.4e-13  Score=133.45  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC--Cc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      -+++|+||||||||||+|.+ |++.+.  -| .|      |+.     ...+++.+.+     +..+|+.++...  ...
T Consensus       790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~V------pq~-----~~~l~v~d~I-----~~rig~~d~~~~--~~s  850 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYV------PAE-----VCRLTPIDRV-----FTRLGASDRIMS--GES  850 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCE------ESS-----EEEECCCSBE-----EEECC-----------C
T ss_pred             cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEe------ccC-----cCCCCHHHHH-----HHHcCCHHHHhh--chh
Confidence            47899999999999999999 987642  11 11      110     0122333332     112333322111  112


Q ss_pred             hhhhhHH-HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           80 HLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        80 ~l~~~~~-~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      .++.+++ ++++++++.  +|+++|+||||. +|+.....+...+++.+.+. |.+++++
T Consensus       851 tf~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~  908 (1022)
T 2o8b_B          851 TFFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS  908 (1022)
T ss_dssp             HHHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             hhHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            3444443 677778888  999999999999 99998655444899999765 7777655

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.27  E-value=4.2e-12  Score=111.25  Aligned_cols=127  Identities=10%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCC-----CC--CcccChhhhhh------------HHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENF-----DY--PVAMDIRELIS------------LEDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~-----~y--~~~~~i~e~i~------------~~~~   62 (248)
                      -+++|+||||||||||++.++|...+.+| +|.+.+.+.....+     .+  .......+.+.            ++++
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL  115 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence            46899999999999999999999998877 78776654321100     00  00111111111            1222


Q ss_pred             HHHhCC--CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cC------H-HhHHHHHHHHHHHHHh-CCC
Q 025795           63 MEELGL--GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RNF  131 (248)
Q Consensus        63 m~~~~L--~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~~  131 (248)
                      ++..++  ...... .....+  ..++. ++++..  +|+++|+|||+. ++      . .....++ +.++++++ .|.
T Consensus       116 l~~~~l~i~~~~~~-~~~~~l--~~~~~-a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~~  188 (296)
T 1cr0_A          116 FGNDTFHLYDSFAE-AETDRL--LAKLA-YMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTGV  188 (296)
T ss_dssp             HSSSCEEEECCCCS-CCHHHH--HHHHH-HHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHCC
T ss_pred             hccCCEEEECCCCC-CCHHHH--HHHHH-HHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhCC
Confidence            221122  111000 011111  11122 555667  999999999998 43      3 3445566 66777754 488


Q ss_pred             eEEEE
Q 025795          132 NVCAV  136 (248)
Q Consensus       132 ~ii~v  136 (248)
                      +++++
T Consensus       189 ~vi~v  193 (296)
T 1cr0_A          189 VLVVI  193 (296)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88776

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.26  E-value=2.6e-12  Score=128.74  Aligned_cols=113  Identities=12%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC-CCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~-~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      -+++|+||||||||||+|++++.... ..|.     .-|+. ..++..           +.++..+|+.++....  ...
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~-----------d~i~~~ig~~d~l~~~--~st  735 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIV-----------DGIFTRMGAADNIYKG--RST  735 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECC-----------SEEEEEC------------CC
T ss_pred             eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHH-----------HHHHHhCChHHHHHHh--HHH
Confidence            46899999999999999999754210 0010     00110 000000           0011112222111110  122


Q ss_pred             hhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        81 l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      ++.++.  ..++++ +.  +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus       736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v  792 (918)
T 3thx_B          736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV  792 (918)
T ss_dssp             HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            333432  334433 55  999999999999 9999998887688888864 57777665

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.25  E-value=1.2e-11  Score=100.47  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCce-EEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~-i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      .+++|+||||+|||||++++++.+.+..|. +.+               ++..+.+.  .+...+.-+..          
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~~~~~~~--~~~~~~~~~~~----------   91 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FDTKDLIF--RLKHLMDEGKD----------   91 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EEHHHHHH--HHHHHHHHTCC----------
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EEHHHHHH--HHHHHhcCchH----------
Confidence            468999999999999999999998765552 211               12222211  11111100000          


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                       .   ..+  ....  +|+++++|||+.  +|...+..+. ++++...++|.+++++
T Consensus        92 -~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~t  139 (180)
T 3ec2_A           92 -T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIIT  139 (180)
T ss_dssp             -S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred             -H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEE
Confidence             0   111  1123  799999999983  9998887777 8888877678887765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.25  E-value=1.4e-12  Score=123.67  Aligned_cols=126  Identities=13%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCcHHHHHHH--HHhCCCCCCceEEEeccCCCC------CCCCCCc-ccChhhhhhHHHHHHHhCCCCCCc
Q 025795            3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDYPV-AMDIRELISLEDVMEELGLGPNGG   73 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~--l~g~l~~~~G~i~i~~~d~~~------~~~~y~~-~~~i~e~i~~~~~m~~~~L~~~~~   73 (248)
                      -+++|+||||||||||+++  ++|+.+|.+|.|++.|.+...      ..++|.+ +....+++      ..+...+...
T Consensus        40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l------~~~~~~~~~~  113 (525)
T 1tf7_A           40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL------FILDASPDPE  113 (525)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE------EEEECCCCSS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE------EEEecCcccc
Confidence            4689999999999999999  789999899999999876421      2233311 10000000      0001111000


Q ss_pred             hhhhHHh-hhhhHHHHHHHHHccCCCCCEEEEeCCCc------cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           74 LIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        74 ~~~~~~~-l~~~~~~~La~~l~~~~~p~~lilDEPt~------LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ....++. -...+...+..++... +|+.+++|||++      +|+..++.+. ++++.+++.|.+++++
T Consensus       114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~i  181 (525)
T 1tf7_A          114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMT  181 (525)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEE
T ss_pred             hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence            0000000 0111214455555422 899999999986      3778888888 9999998778888776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.23  E-value=2e-11  Score=109.45  Aligned_cols=150  Identities=16%  Similarity=0.136  Sum_probs=86.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------C--CCCC-------CcccChhhhhhHHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------E--NFDY-------PVAMDIRELISLED   61 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~--~~~y-------~~~~~i~e~i~~~~   61 (248)
                      +.+++++|||||||||+++.|+|+++|.+|+|.+.+.|+..           +  .+++       .|..++++++....
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~  208 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK  208 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999988632           1  1112       22234455443211


Q ss_pred             HHHHhC---CCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 025795           62 VMEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVY  137 (248)
Q Consensus        62 ~m~~~~---L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~ii~v~  137 (248)
                      . ....   +...|... ....+...+ ..+++++..  ++.++++|.+++.      ++. +.++.+. +.+.+.+++.
T Consensus       209 ~-~~~d~vliDtaG~~~-~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilT  276 (328)
T 3e70_C          209 A-RGIDVVLIDTAGRSE-TNRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILT  276 (328)
T ss_dssp             H-HTCSEEEEEECCSCC-TTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEE
T ss_pred             h-ccchhhHHhhccchh-HHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEe
Confidence            1 1111   00001000 011233334 456778776  7778888866653      333 4445554 3577766664


Q ss_pred             ecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795          138 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  172 (248)
Q Consensus       138 l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl  172 (248)
                      =+|...-.  .       ...+.....+.|...+-
T Consensus       277 KlD~~a~~--G-------~~l~~~~~~~~pi~~i~  302 (328)
T 3e70_C          277 KLDADARG--G-------AALSISYVIDAPILFVG  302 (328)
T ss_dssp             CGGGCSCC--H-------HHHHHHHHHTCCEEEEE
T ss_pred             CcCCccch--h-------HHHHHHHHHCCCEEEEe
Confidence            45643221  1       12345566788886543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.22  E-value=2.8e-11  Score=110.22  Aligned_cols=117  Identities=19%  Similarity=0.156  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccC-hhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~-i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      -+++|+|||||||||++++|+|++++. +|+|.+.+.+...   .+..... +.+.        .+|+.+          
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~--------~~g~~~----------  195 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQR--------EVGEDT----------  195 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEE--------EBTTTB----------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEee--------ecCCCH----------
Confidence            468999999999999999999999987 8999887753321   1111000 0000        122222          


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA  156 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~  156 (248)
                        ..++..+++++..  +|+++++|||+  |..+..    .+++.. ..|..++.+    +|. .+...+++.++.
T Consensus       196 --~~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~  255 (372)
T 2ewv_A          196 --KSFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVD  255 (372)
T ss_dssp             --SCSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHH
Confidence              1124788899998  99999999999  554432    334443 457666433    333 446666665543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.20  E-value=8.6e-11  Score=105.36  Aligned_cols=47  Identities=13%  Similarity=0.132  Sum_probs=39.9

Q ss_pred             HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        87 ~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++|+++..  +|+++|+||||+ ||+..+..+. ++++++.+.+.+++++
T Consensus       263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~  310 (339)
T 3qkt_A          263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV  310 (339)
T ss_dssp             HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            467777777  999999999999 9999999999 8888886667777665

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.20  E-value=7.4e-12  Score=123.50  Aligned_cols=105  Identities=14%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCC-CCCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA-AENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY   76 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~-~~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~   76 (248)
                      -+++|+||||||||||+|+++|+.. ++.|.+.     |+ ...+++.    +.+++.+++..       ++  .     
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S-----  637 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S-----  637 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S-----
T ss_pred             cEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c-----
Confidence            3689999999999999999999864 5667542     21 1123331    12333332210       11  1     


Q ss_pred             hHHhhhhhHHHHHHHHH--ccCCCCCEEEEeCC---Cc-cCHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 025795           77 CMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        77 ~~~~l~~~~~~~La~~l--~~~~~p~~lilDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~~ii~v  136 (248)
                         .....+ ..+++++  +.  +|+++|+|||   |+ +|..+.. .+. +.+.+   .|.+++++
T Consensus       638 ---~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~~---~g~~vl~~  694 (765)
T 1ewq_A          638 ---TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALHE---RRAYTLFA  694 (765)
T ss_dssp             ---HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHHH---HTCEEEEE
T ss_pred             ---HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHHh---CCCEEEEE
Confidence               111222 5667777  66  9999999999   88 9988753 444 44433   46676655

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.19  E-value=1.1e-11  Score=107.97  Aligned_cols=126  Identities=13%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-CCCCC-CcccChhh-------------hhhHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDY-PVAMDIRE-------------LISLEDVMEELG   67 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-~~~~y-~~~~~i~e-------------~i~~~~~m~~~~   67 (248)
                      -+++|+||||||||||++.+++.+..  |.+. .|.++.. ..+.| ....+..+             .....++++.++
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~  107 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL  107 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence            46899999999999999999986653  3221 1221110 01111 00000000             011334566666


Q ss_pred             CCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc---cCHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 025795           68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY  137 (248)
Q Consensus        68 L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~~ii~v~  137 (248)
                      +.+.....  ...++.+. ...+++++.  +|+++++|||++   +|....   ..++ +.++.+. +.|.++++++
T Consensus       108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~  178 (279)
T 1nlf_A          108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH  178 (279)
T ss_dssp             ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred             EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence            65432221  12344444 455567777  899999999997   565433   5666 6666664 4588888773

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.19  E-value=5.2e-13  Score=110.74  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +++|+||||||||||++.|+|+++ ++| +.++|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT   37 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence            579999999999999999999999 889 88887654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.13  E-value=1.6e-10  Score=104.28  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--CCCC----ce-EEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~----G~-i~i~~~d   39 (248)
                      -+++|+||||||||||++.+++..  +|+.    |+ +++.+.+
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            578999999999999999999987  5554    67 7777654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.11  E-value=3.9e-11  Score=118.93  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCCC-CCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY   76 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~~-~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~   76 (248)
                      -+++|+||||||||||+|+++|+.. ...|..     -|+. ..+++.    ..+++.+.+.       .++        
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~-------~~~--------  667 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLA-------SGR--------  667 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHH-------hhh--------
Confidence            4689999999999999999999642 222310     0111 112221    1222222221       011        


Q ss_pred             hHHhhhhhHHHHHHHH--HccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795           77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        77 ~~~~l~~~~~~~La~~--l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                        ..++.++ ..++.+  .+.  +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus       668 --stf~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~  726 (800)
T 1wb9_A          668 --STFMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA  726 (800)
T ss_dssp             ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             --hhhhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence              1122222 223333  355  999999999988 8888777764488888876 47777655

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.10  E-value=1.5e-12  Score=108.17  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhh-------------hhHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL   68 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~-------------i~~~~~m~~~~L   68 (248)
                      +.+++|+|||||||||++++|+|++.|   .+.+...|+......   .+++++.             -.+.+.++.+++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG---HLPLEERLRVNYDHPDAFDLALYLEHAQALLR   79 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT---TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc---cccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence            468999999999999999999998765   566666654321111   1122211             125566676666


Q ss_pred             CCCCchhhhHHhhhhh------HHHHHHHHHccCCCCCEEEEeCCCc--------cCHHhHHHHHHHHHHHH-HhCCCeE
Q 025795           69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDHL-KSRNFNV  133 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~------~~~~La~~l~~~~~p~~lilDEPt~--------LD~~~~~~~~~~ll~~l-~~~~~~i  133 (248)
                      +...... ..+ ++.+      +++.+++++..  +|.++++|||++        ||......+. +.+++. .+.|.++
T Consensus        80 ~~~~~~~-~~~-~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~  154 (211)
T 3asz_A           80 GLPVEMP-VYD-FRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL  154 (211)
T ss_dssp             TCCEEEC-CEE-TTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred             CCCcCCC-ccc-CcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence            5432111 011 1111      11234556666  777778888874        6877777777 555553 4456655

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.10  E-value=4.1e-12  Score=107.16  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CcccC----------------hhhh-
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVAMD----------------IREL-   56 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~~~~----------------i~e~-   56 (248)
                      .+++|+||||||||||+++|+|++ |  |++.+ |.+...        ..+.| +++..                +..+ 
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   99 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF   99 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence            468999999999999999999998 5  89988 654311        22333 11100                0000 


Q ss_pred             -----hhHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHH-----HHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795           57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV  123 (248)
Q Consensus        57 -----i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~L-----a~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll  123 (248)
                           -.++++++.....     ... ..++++++  +++     ++++..  +|+++++|||++ +|..+...+. +.+
T Consensus       100 ~g~~~~~i~~~l~~~~~~-----il~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l  170 (218)
T 1z6g_A          100 YGTLKSEYDKAKEQNKIC-----LFE-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM  170 (218)
T ss_dssp             EEEEHHHHHHHHHTTCEE-----EEE-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred             CCCcHHHHHHHHhCCCcE-----EEE-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence                 1134444432210     000 11233333  455     456666  889999999998 9988877776 444


Q ss_pred             HHH
Q 025795          124 DHL  126 (248)
Q Consensus       124 ~~l  126 (248)
                      ..+
T Consensus       171 ~~~  173 (218)
T 1z6g_A          171 EQL  173 (218)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.08  E-value=7.4e-10  Score=91.81  Aligned_cols=116  Identities=13%  Similarity=0.053  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhh-----hHHHHHHHhCCCCCCchhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-----SLEDVMEELGLGPNGGLIYC   77 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i-----~~~~~m~~~~L~~~~~~~~~   77 (248)
                      -+++|+||||||||||++.+++  . .++.+.+...+..     +.+ -.+.+..     ..+++++.+.+....     
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   86 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG-----FSP-ERLVQMAETRGLNPEEALSRFILFTPS-----   86 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC-----CCH-HHHHHHHHTTTCCHHHHHHHEEEECCT-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC-----CCH-HHHHHHHHhcCCChHHHhhcEEEEecC-----
Confidence            4689999999999999999999  3 3455555443221     000 0011100     012222222211110     


Q ss_pred             HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 025795           78 MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY  137 (248)
Q Consensus        78 ~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~~ii~v~  137 (248)
                         -...+  ....++++... +|+++++|||++ +|....        ..++ +.++++.+ .+.++++++
T Consensus        87 ---~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~  153 (220)
T 2cvh_A           87 ---DFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN  153 (220)
T ss_dssp             ---TTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred             ---CHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence               00111  14455667661 499999999999 887432        2233 33555543 477877663

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.05  E-value=1.6e-09  Score=91.03  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh--CCCC-----CCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g--~l~~-----~~G~i~i~~~d   39 (248)
                      -+++|+||||||||||++.+++  ..++     ..|.+++.+.+
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4689999999999999999999  4544     45677776654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.03  E-value=4.8e-11  Score=101.04  Aligned_cols=114  Identities=11%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC---CCCCC-CcccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIY   76 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~---~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~~   76 (248)
                      -+++|+||||||||||+++|+|..+|  ..|.|.+.+.++..   ..+.| +++...     .......-.+-.+... .
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~-----f~~~~~~~~f~E~~~~-~   90 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE-----FKEMISRDAFLEHAEV-F   90 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-----HHHHHHTTCEEEEEEE-T
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH-----HHHHHhcCHHHHHHHH-H
Confidence            47899999999999999999999985  68889888876643   23445 222111     1111110000001000 0


Q ss_pred             hHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        77 ~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                       ...+.... ..+. .+..  .++++|+|    +|+.+...+. +.+.    .+.+++++
T Consensus        91 -~~~yg~~~-~~v~-~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~  136 (219)
T 1s96_A           91 -GNYYGTSR-EAIE-QVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL  136 (219)
T ss_dssp             -TEEEEEEH-HHHH-HHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred             -hccCCCCH-HHHH-HHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence             00010111 2233 3344  68999999    9999987777 4433    45565544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.00  E-value=7.1e-10  Score=98.42  Aligned_cols=91  Identities=23%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+...      .  ..+.  +..+.+..++......     ..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~------~--a~eq--L~~~~~~~gl~~~~~~-----s~  168 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA------A--AIEQ--LKIWGERVGATVISHS-----EG  168 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH------H--HHHH--HHHHHHHHTCEEECCS-----TT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH------H--HHHH--HHHHHHHcCCcEEecC-----Cc
Confidence            468999999999999999999999999999999998875321      0  1111  3445566665321100     00


Q ss_pred             hhhHH---HHHHHHHccCCCCCEEEEeCCCc
Q 025795           82 EDNLD---DWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        82 ~~~~~---~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      ....+   ..+++++..  +|+++|+|||+.
T Consensus       169 ~~~~~v~~~al~~a~~~--~~dvvIiDtpg~  197 (306)
T 1vma_A          169 ADPAAVAFDAVAHALAR--NKDVVIIDTAGR  197 (306)
T ss_dssp             CCHHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred             cCHHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence            00011   367777888  999999999996

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.00  E-value=8.1e-10  Score=98.40  Aligned_cols=116  Identities=13%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh-CCCCCCceEEEeccCCCC-----CCCCCCcc-----c-----ChhhhhhHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPVA-----M-----DIRELISLEDVMEELGL   68 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g-~l~~~~G~i~i~~~d~~~-----~~~~y~~~-----~-----~i~e~i~~~~~m~~~~L   68 (248)
                      +.|.||||+||||+++++++ +..+..|.+.+.|.+...     ..+.+.+.     +     ...+...+++.++.+.-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  118 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ  118 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence            78999999999999999999 788899999887754321     11111000     0     00000012223322211


Q ss_pred             CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ...      ..... .+     ..+..  +|+++|+|||+++|..+...+. +.+++.. .+.+++++
T Consensus       119 ~~~------~~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~  170 (354)
T 1sxj_E          119 MEQ------VDFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV  170 (354)
T ss_dssp             TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred             hcc------ccccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence            100      00000 00     01344  8999999999999998887777 7777653 34455444

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.00  E-value=7.3e-10  Score=97.71  Aligned_cols=108  Identities=17%  Similarity=0.070  Sum_probs=71.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCC--chhhhHH
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--GLIYCME   79 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~--~~~~~~~   79 (248)
                      +.+++++|+||+||||+++.+++++.+.+|+|.+.+.|+....       .. +.  ...+.+..++.-..  ....+. 
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~-------~~-~q--l~~~~~~~~l~~~~~~~~~~p~-  166 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA-------AR-EQ--LRLLGEKVGVPVLEVMDGESPE-  166 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-------HH-HH--HHHHHHHHTCCEEECCTTCCHH-
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-------HH-HH--HHHhcccCCeEEEEcCCCCCHH-
Confidence            3578899999999999999999999999999999998864311       01 11  22344555553211  000011 


Q ss_pred             hhhhhHHHHHHHHHccCCCCCEEEEeCC-Cc-cCHHhHHHHHHHHHHHH
Q 025795           80 HLEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        80 ~l~~~~~~~La~~l~~~~~p~~lilDEP-t~-LD~~~~~~~~~~ll~~l  126 (248)
                      .+   ++.+++.+...  +++++|+||| +. +|......+. ++.+.+
T Consensus       167 ~l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~  209 (295)
T 1ls1_A          167 SI---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL  209 (295)
T ss_dssp             HH---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred             HH---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence            11   23566666557  8999999999 45 8877776666 665555

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.00  E-value=1.6e-10  Score=104.58  Aligned_cols=128  Identities=10%  Similarity=0.021  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC----ceEEEeccCCCCCCCCCCcccChhhhhhH-H-HH----HH---HhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL-E-DV----ME---ELGLG   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~----G~i~i~~~d~~~~~~~y~~~~~i~e~i~~-~-~~----m~---~~~L~   69 (248)
                      -.++|+||||||||||+++|+|+++|..    |++++.+..... ...+.. .+.+ .+.. . +.    ..   .+-+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~~-~I~~~~q~~~~~~~t~~~nl~~~  247 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDYP-QMALGHQRYIDYAVRHSHKIAFI  247 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTHH-HHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHHH-HHHHHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999998    887764211111 111111 0111 1211 0 00    01   01111


Q ss_pred             CCCc-hhhhHHhh-hhhHHHHHHHHHc-cCCCCCEEEEeC---CC------c-cCHHhHHHHHHHHHHHHH-hCCCeEEE
Q 025795           70 PNGG-LIYCMEHL-EDNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA  135 (248)
Q Consensus        70 ~~~~-~~~~~~~l-~~~~~~~La~~l~-~~~~p~~lilDE---Pt------~-LD~~~~~~~~~~ll~~l~-~~~~~ii~  135 (248)
                      .... ........ .++.+..++++.. .  +|+++++||   |+      . +|...+..+. +.++++. +.+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili  324 (365)
T 1lw7_A          248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE  324 (365)
T ss_dssp             SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred             eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence            1100 00000111 1122255555543 5  899999999   64      4 8888888888 6666654 34777765


Q ss_pred             E
Q 025795          136 V  136 (248)
Q Consensus       136 v  136 (248)
                      +
T Consensus       325 l  325 (365)
T 1lw7_A          325 I  325 (365)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.98  E-value=4.5e-11  Score=102.00  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH---hCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~---g~l~~~~G~i~i~~~d   39 (248)
                      .+++|+|||||||||+++.|+   |+..++.|++.+.+.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~   67 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK   67 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence            578999999999999999999   9999999998877643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.97  E-value=2.6e-10  Score=105.93  Aligned_cols=143  Identities=9%  Similarity=-0.018  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC---CCC------------CCCCC-Cc-ccChhhhhhHHHH---
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-AMDIRELISLEDV---   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d---~~~------------~~~~y-~~-~~~i~e~i~~~~~---   62 (248)
                      -+++|+||||||||||+++|+|+.+|+.|.|.++|..   ...            ..+.| .+ +.......++.+.   
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~  237 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR  237 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999973   211            11222 11 2223333332221   


Q ss_pred             -HHHhCC-CCCC-chhhhHHhhhhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh---C-CC-e
Q 025795           63 -MEELGL-GPNG-GLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF-N  132 (248)
Q Consensus        63 -m~~~~L-~~~~-~~~~~~~~l~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~-~  132 (248)
                       .+.++- +..- ........+++++ ++.+|   +.  +|++      ++ +|+.++..+. ++++++.+   . |. |
T Consensus       238 ~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~GsiT  305 (438)
T 2dpy_A          238 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSIT  305 (438)
T ss_dssp             HHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEEE
T ss_pred             HHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCccc
Confidence             111211 1110 0011233445544 24444   45  7776      77 9999999988 88888754   2 42 2


Q ss_pred             EEEEEecccccccChHHHHHHHHHHHH
Q 025795          133 VCAVYLLDSQFITDVTKFISGCMASLS  159 (248)
Q Consensus       133 ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (248)
                      .+.+-++.+|.+.  ..+++.++....
T Consensus       306 ~~~tVlv~tHdl~--~~iad~v~~l~d  330 (438)
T 2dpy_A          306 AFYTVLTEGDDQQ--DPIADSARAILD  330 (438)
T ss_dssp             EEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred             ceeEEEEeCCCcc--chhhceEEEEeC
Confidence            2333356778777  445666655433

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.95  E-value=1e-09  Score=98.96  Aligned_cols=145  Identities=10%  Similarity=0.059  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCC------------C--CcccChhhhhhH----HHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFD------------Y--PVAMDIRELISL----EDV   62 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~------------y--~~~~~i~e~i~~----~~~   62 (248)
                      -+++|+||||||||||+++|+|+.+|+.|.+.+.|.++..  +.+.            +  ..+....+.+..    ..+
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~  151 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI  151 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998865311  0000            0  001112222221    111


Q ss_pred             HHHh-CCCCCCc-hhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh--CCC-eEEEE
Q 025795           63 MEEL-GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RNF-NVCAV  136 (248)
Q Consensus        63 m~~~-~L~~~~~-~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~--~~~-~ii~v  136 (248)
                      .+.+ ..+.+-- .......++.++ ..++.+ ..  +|++      +. +|+..+..+. ++++++.+  .|. |.+.+
T Consensus       152 ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~t  220 (347)
T 2obl_A          152 AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYT  220 (347)
T ss_dssp             HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEE
T ss_pred             HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEE
Confidence            1111 1111100 001234455555 334433 34  6655      67 9999999988 88888864  343 33334


Q ss_pred             EecccccccChHHHHHHHHHHHHH
Q 025795          137 YLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus       137 ~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      -++.+|.+.  ..+++.+.....+
T Consensus       221 Vl~~thdl~--~~i~d~v~~i~dG  242 (347)
T 2obl_A          221 VLLESDNVN--DPIGDEVRSILDG  242 (347)
T ss_dssp             EECCSSCCC--CHHHHHHHHHCSE
T ss_pred             EEEeCCCCC--ChhhhheEEeeCc
Confidence            467788887  4566766665444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=6.5e-10  Score=102.68  Aligned_cols=125  Identities=15%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCC-C-------CCCCCCCcccChhhhhhHHHHHHHhCCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP-A-------AENFDYPVAMDIRELISLEDVMEELGLGPNG   72 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~-~-------~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~   72 (248)
                      +-++|+||||||||||+++|+|...+..|  .+.+.+... .       .+.....+.+++.|++........      .
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~  105 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------S  105 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc------h
Confidence            55799999999999999999999875433  111110000 0       011111224455555543322110      0


Q ss_pred             chhhh-HHhhhhhH------HHHHHHHHccCCCCC---EEEEeCCC-c-cCHHhHHHHHHHHHHHHHhCCCeEEEE-Eec
Q 025795           73 GLIYC-MEHLEDNL------DDWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLL  139 (248)
Q Consensus        73 ~~~~~-~~~l~~~~------~~~La~~l~~~~~p~---~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~  139 (248)
                      ..... .+++...+      ++.+++++..  +|+   ++++|||| . +|+...     .+++.+.. +.++++| +=.
T Consensus       106 ~~~~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~  177 (418)
T 2qag_C          106 NCWQPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKA  177 (418)
T ss_dssp             --CHHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEEST
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEcc
Confidence            00000 11111111      1346777777  899   99999998 5 887653     44566643 5665554 444


Q ss_pred             cc
Q 025795          140 DS  141 (248)
Q Consensus       140 d~  141 (248)
                      |.
T Consensus       178 Dl  179 (418)
T 2qag_C          178 DT  179 (418)
T ss_dssp             TS
T ss_pred             cC
Confidence            54

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.91  E-value=3.7e-10  Score=90.87  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -+++|+||||||||||+|+|+|.+ |.+|+|.+.|.+.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            478999999999999999999999 9999999988765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.88  E-value=3.4e-08  Score=92.72  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++|+|||||||||+++.|+|++++.+|+|.+.+.|.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            468999999999999999999999999999999988765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.87  E-value=1.1e-10  Score=103.65  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCC------C-CCCCCCcccChhhhhhHHHHHHHhCCCCCCch
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL   74 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~------~-~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~   74 (248)
                      -+++|+||||||||||+++|+|++   +|+|.... .++.      . +++.+.++.+  +  .+.+.++.+ + |++-.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld  197 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD  197 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence            478999999999999999999998   89986533 2221      0 1222211111  1  245555553 2 12111


Q ss_pred             hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795           75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL  119 (248)
Q Consensus        75 ~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~  119 (248)
                         ...++++++.. ||+++.  +|++||    |+ ||+.+...+.
T Consensus       198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL  233 (305)
T ss_dssp             ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred             ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence               12455555444 999999  999999    88 9999886654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.87  E-value=1.2e-08  Score=90.15  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~d   39 (248)
                      +-++|+||||+|||||++.|.|. ..|.+| +.+.|.+
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~   55 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK   55 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence            56799999999999999999997 888888 6655543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.86  E-value=8e-09  Score=94.86  Aligned_cols=119  Identities=17%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH--HhCCCCC-----CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCC----
Q 025795            3 YAQLVIGPAGSGKSTYCSSL--YRHCETV-----RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN----   71 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l--~g~l~~~-----~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~----   71 (248)
                      -+++|+||||||||||++.+  .+..++.     .+.+++.+.+.      +    +   ...+..+.+.+++.+.    
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~------~----~---~~rl~~~a~~~gl~~~~vle  245 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT------F----R---PVRLVSIAQRFGLDPDDALN  245 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC------C----C---HHHHHHHHHHTTCCHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc------c----C---HHHHHHHHHHcCCChHhHhh
Confidence            46899999999999999954  4666553     23566665432      1    0   1112333444444321    


Q ss_pred             -Cch--hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 025795           72 -GGL--IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC  134 (248)
Q Consensus        72 -~~~--~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~~ii  134 (248)
                       ...  ....+.....+ ..+...+... +|+++++|+|+. ++....            ..++ ..++++.+ .|.+++
T Consensus       246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI  322 (400)
T 3lda_A          246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV  322 (400)
T ss_dssp             TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred             cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence             000  00000000111 1112222222 799999999998 775322            3445 55566654 488888


Q ss_pred             EEE
Q 025795          135 AVY  137 (248)
Q Consensus       135 ~v~  137 (248)
                      +|.
T Consensus       323 lv~  325 (400)
T 3lda_A          323 VTN  325 (400)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            773

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.86  E-value=1.1e-09  Score=90.09  Aligned_cols=125  Identities=11%  Similarity=-0.013  Sum_probs=65.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC-----CCCCceEEEec-------c---CCCCCC---------------CC-CC--
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVN-------L---DPAAEN---------------FD-YP--   48 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l-----~~~~G~i~i~~-------~---d~~~~~---------------~~-y~--   48 (248)
                      .+.++|+|+||||||||++.++|..     .|+.|.+...+       .   |.....               +. |.  
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~  105 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK  105 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999999988     77777654422       0   110000               00 00  


Q ss_pred             -c---------ccCh--hh-hhhHHHHHHHhCCCCCCchhhhHHhhhhhHH---HHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795           49 -V---------AMDI--RE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-IE  111 (248)
Q Consensus        49 -~---------~~~i--~e-~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~---~~La~~l~~~~~p~~lilDEPt~-LD  111 (248)
                       .         +.+-  .. ...+.++++..++....- ....+.++++.+   ...+++++.  +|..++.|||++ +|
T Consensus       106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~  182 (210)
T 1pui_A          106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL-LTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLK  182 (210)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTT
T ss_pred             hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecC
Confidence             0         0000  00 011334445555432110 011244444321   456677777  788889999999 99


Q ss_pred             HHhHHHHHHHHHHHHHhCC
Q 025795          112 LFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus       112 ~~~~~~~~~~ll~~l~~~~  130 (248)
                      .....+++ +.+.++.+++
T Consensus       183 ~~~~~~l~-~~l~~~~~~~  200 (210)
T 1pui_A          183 KQGVDKLR-QKLDTWFSEM  200 (210)
T ss_dssp             TBSHHHHH-HHHHHHHC--
T ss_pred             CCCHHHHH-HHHHHHHhhc
Confidence            99999998 6666665444

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.85  E-value=1.7e-08  Score=91.31  Aligned_cols=124  Identities=13%  Similarity=0.057  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -.++|+||||||||||+++|+|+++|++|.|.+.|...    +...........+...+.    .++.         ...
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e----~~~~~~~~~v~~v~~q~~----~~~~---------~~~  238 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE----LFLPDHPNHVHLFYPSEA----KEEE---------NAP  238 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC----CCCTTCSSEEEEECC-----------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc----cCccccCCEEEEeecCcc----cccc---------ccc
Confidence            36899999999999999999999999999999987421    111000000000000000    0000         011


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS  157 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (248)
                      ..++..++.++..  .|+.+++|||..-      +.. ++++.+.....+++.+ +   |. .++...+..+...
T Consensus       239 ~t~~~~i~~~l~~--~pd~~l~~e~r~~------~~~-~~l~~l~~g~~~~l~t-~---H~-~~~~~~~~Rl~~l  299 (361)
T 2gza_A          239 VTAATLLRSCLRM--KPTRILLAELRGG------EAY-DFINVAASGHGGSITS-C---HA-GSCELTFERLALM  299 (361)
T ss_dssp             CCHHHHHHHHTTS--CCSEEEESCCCST------HHH-HHHHHHHTTCCSCEEE-E---EC-SSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhc--CCCEEEEcCchHH------HHH-HHHHHHhcCCCeEEEE-E---CC-CCHHHHHHHHHHH
Confidence            1234777888888  9999999999852      233 5566664322233322 1   22 2355555555443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.80  E-value=1.3e-08  Score=89.71  Aligned_cols=87  Identities=15%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      .+++++|||||||||+++.|++.+.+.+| +|.+.+.|+..        ....+.+  ..+.+..|+......      -
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL--~~~~~~~gl~~~~~~------~  169 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQL--KTYAELLQAPLEVCY------T  169 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHH--HHHHTTTTCCCCBCS------S
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHH--HHHHHhcCCCeEecC------C
Confidence            47899999999999999999999988667 89999887631        1222322  222333444322110      1


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      ...++.++++  ..  +++++|+|+|+.
T Consensus       170 ~~~l~~al~~--~~--~~dlvIiDT~G~  193 (296)
T 2px0_A          170 KEEFQQAKEL--FS--EYDHVFVDTAGR  193 (296)
T ss_dssp             HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred             HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence            1223345553  35  899999997764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.79  E-value=2.6e-08  Score=89.33  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      .+++|+|+||+||||+++.|++.+.+.+|++.+.+.||..
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~   96 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   96 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence            5789999999999999999999999999999999988854

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.78  E-value=5.2e-09  Score=96.71  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.0

Q ss_pred             HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025795           87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV  136 (248)
Q Consensus        87 ~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v  136 (248)
                      +.++++|..  +.+++++|+|+. +.+.....+. +.+++ +...|..++.+
T Consensus       167 ieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i  215 (427)
T 2qag_B          167 LVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF  215 (427)
T ss_dssp             HHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred             HHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence            678888886  899999999998 9887777777 55554 77778777544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.74  E-value=1.7e-08  Score=90.90  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~   43 (248)
                      .+++|+|++|||||||++.|.|.+.+.+|+|.+.+.||...
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            68999999999999999999999999999999999988653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.73  E-value=6.8e-08  Score=89.46  Aligned_cols=152  Identities=18%  Similarity=0.155  Sum_probs=83.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.+++++||+||||||++..|++++.+.+++|.+.+.|+..      +.  ..+.  +..+-+..++.-..... ..+ .
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------~~--a~eq--L~~~~~~~gv~~~~~~~-~~d-p  164 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------PA--AYDQ--LLQLGNQIGVQVYGEPN-NQN-P  164 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------HH--HHHH--HHHHHHTTTCCEECCTT-CSC-H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------hh--HHHH--HHHHHHhcCCceeeccc-cCC-H
Confidence            46889999999999999999999999999999999887521      11  1111  22233334442111000 000 0


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc----cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS  157 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~  157 (248)
                      ..-....++.+...  +++++|+|+|+.    .|.....++. .+.+.+ +. ..+++|  +|++.-.+....+.     
T Consensus       165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~p-d~vlLV--lDa~~gq~a~~~a~-----  232 (433)
T 3kl4_A          165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KP-DDVILV--IDASIGQKAYDLAS-----  232 (433)
T ss_dssp             HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CC-SEEEEE--EEGGGGGGGHHHHH-----
T ss_pred             HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CC-cceEEE--EeCccchHHHHHHH-----
Confidence            00011334444445  899999999995    4555444444 544444 22 233333  67665443333221     


Q ss_pred             HHHHHh-hCCCeeeeecccccccc
Q 025795          158 LSAMVQ-LELPHVNILSKMDLVTN  180 (248)
Q Consensus       158 ~~~~~~-~~~p~~~vlsk~dll~~  180 (248)
                         .++ .-.+..-|+||.|.-.+
T Consensus       233 ---~f~~~~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          233 ---RFHQASPIGSVIITKMDGTAK  253 (433)
T ss_dssp             ---HHHHHCSSEEEEEECGGGCSC
T ss_pred             ---HHhcccCCcEEEEeccccccc
Confidence               111 11234457888886443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.72  E-value=1.7e-09  Score=92.28  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.++||+|||||||||++++|+|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999975

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.68  E-value=4.3e-09  Score=98.71  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      +++|+||||||||||+++|+|+++|++|+|.+.|.+..
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            68999999999999999999999999999999987653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.68  E-value=4e-07  Score=76.84  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      +-++|+|++|+|||||++.|.|.....
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~~   56 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVFH   56 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence            568999999999999999999865443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.68  E-value=3.9e-08  Score=82.59  Aligned_cols=39  Identities=10%  Similarity=0.054  Sum_probs=28.7

Q ss_pred             CCCEEEEeCCCc-c--CHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        98 ~p~~lilDEPt~-L--D~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +|+++++|+|+. .  |....+..+..+.+.+++.|.+++++
T Consensus       128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~  169 (247)
T 2dr3_A          128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFV  169 (247)
T ss_dssp             TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            799999999998 5  55555566646655555678888776

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.68  E-value=1.9e-08  Score=88.99  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEE---eccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i---~~~d   39 (248)
                      .++||+||||||||||+++|+|++.  |++|+|.+   +|..
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            6899999999999999999999988  99999999   5544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.66  E-value=1.8e-06  Score=69.16  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=61.2

Q ss_pred             CCCEEEEeCCCc----cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795           98 DDDYLVFDCPGQ----IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL  172 (248)
Q Consensus        98 ~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl  172 (248)
                      +.++.++|.||-    .+...+.... .+..... ......++++++|+..-...... . +   ....-..+.|.+-|+
T Consensus        67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~-~---~~~~~~~~~p~i~v~  140 (195)
T 3pqc_A           67 NSKYYFVDLPGYGYAKVSKKERMLWK-RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-M-M---VEWMKSLNIPFTIVL  140 (195)
T ss_dssp             TTTEEEEECCCBSSSCCCHHHHHHHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-H---HHHHHHTTCCEEEEE
T ss_pred             CCcEEEEECCCCccccCChhhHHHHH-HHHHHHHhcCcCceEEEEEecCCCCCCHHHH-H-H---HHHHHHcCCCEEEEE
Confidence            346889999993    2222222222 3333332 22233445566775443222211 0 1   111223478999999


Q ss_pred             cccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH--HHHHHHHhh
Q 025795          173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRLLSQIMK  244 (248)
Q Consensus       173 sk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~--~~~~~~id~  244 (248)
                      ||+|+.... ..+                       ...+.+.+....++-..|.+++..+.+  ..++..|-+
T Consensus       141 nK~Dl~~~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  190 (195)
T 3pqc_A          141 TKMDKVKMS-ERA-----------------------KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST  190 (195)
T ss_dssp             ECGGGSCGG-GHH-----------------------HHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EChhcCChH-HHH-----------------------HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence            999997543 111                       111223334445566788888888877  666655543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.65  E-value=4e-08  Score=80.11  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-----------CCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----------~~G~i~i~~~   38 (248)
                      +.++|+|+||||||||++.++|...+           ..|.+.+.|.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~   76 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK   76 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence            67899999999999999999998765           4677777764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.62  E-value=3.8e-06  Score=69.23  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .-++|+|+.|+|||||++.+.|-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.60  E-value=3.1e-08  Score=80.44  Aligned_cols=35  Identities=31%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+++|+|||||||||+++.|+|.  +..|.|.+++.+
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~   44 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD   44 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence            57899999999999999999998  678999998754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.59  E-value=1.1e-07  Score=85.66  Aligned_cols=116  Identities=13%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -++.|.||||||||||+..++......+|.+.+...+..     ..+           ...+.+|+....-.+... .-.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~~-----------~~a~~lG~~~~~l~i~~~-~~~  124 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LDP-----------EYAKKLGVDTDSLLVSQP-DTG  124 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CCH-----------HHHHHTTCCGGGCEEECC-SSH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cCH-----------HHHHHcCCCHHHeEEecC-CCH
Confidence            468899999999999999988766556677777654321     110           013344443221111000 011


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc-c----------CH---HhHHHHHHHHHHHH----HhCCCeEEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I----------EL---FTHVPVLRNFVDHL----KSRNFNVCAVY  137 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~-L----------D~---~~~~~~~~~ll~~l----~~~~~~ii~v~  137 (248)
                      ... ..+++++....+|+++++|+|+. +          |.   ...+.+. +.+++|    ++.+.+++++.
T Consensus       125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~-~~l~~L~~~a~~~~~tVI~in  195 (349)
T 2zr9_A          125 EQA-LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMS-QALRKMTGALNNSGTTAIFIN  195 (349)
T ss_dssp             HHH-HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHH-HHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHH-HHHHHHHHHHHHhCCEEEEEe
Confidence            222 45566665422699999999998 5          21   1112222 445554    45688887763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.59  E-value=2.8e-07  Score=81.27  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      .+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            578899999999999999999999988999999998864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.58  E-value=3e-08  Score=80.65  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      |..+++|+|||||||||+++.|++   +.+|.+.+.+.+.
T Consensus         1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~   37 (189)
T 2bdt_A            1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII   37 (189)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence            667899999999999999999998   5678899887654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.56  E-value=2.1e-08  Score=89.98  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      .+++|+||||||||||+++|+|++.|++|+|.+.+.|+..
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            6799999999999999999999999999999999998854

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.55  E-value=2.7e-07  Score=79.69  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.++++|++|||||||++.+.|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999999863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.53  E-value=4.7e-07  Score=81.37  Aligned_cols=30  Identities=27%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh--CCCCCCceE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM   33 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i   33 (248)
                      .++|+|++|||||||++.+.|  +++...|.+
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            578999999999999999999  566666654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.53  E-value=1e-08  Score=83.48  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD   39 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d   39 (248)
                      |+.+++|+|++|||||||++.|.|++++.   .|.|.+++.+
T Consensus         1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG   42 (171)
T ss_dssp             --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence            56689999999999999999999999998   7899888754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.53  E-value=2.4e-08  Score=82.87  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~   40 (248)
                      +.+++|+||||||||||+++|+|++++.   .|.|.++|...
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            3689999999999999999999999853   56777666543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.52  E-value=9.7e-07  Score=79.37  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~   43 (248)
                      .++++|+|++|+||||++..+++.+...+.+|.+...||...
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~  120 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST  120 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            368999999999999999999988776677888888887543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.52  E-value=3.9e-09  Score=89.83  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      ++|+|||||||||++++|+|++.|++|.|.+.|.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            578999999999999999999999999999988764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.51  E-value=9.3e-06  Score=65.26  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999874

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.51  E-value=1.8e-07  Score=93.78  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             HHHhCCCCCCceEEEeccCCCC-------------CCCCCCc-ccC-h----hhhhhHHHHHHHhCCCCCC-chhhhHHh
Q 025795           21 SLYRHCETVRRTMHIVNLDPAA-------------ENFDYPV-AMD-I----RELISLEDVMEELGLGPNG-GLIYCMEH   80 (248)
Q Consensus        21 ~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~-~~~-i----~e~i~~~~~m~~~~L~~~~-~~~~~~~~   80 (248)
                      |..+.++|..+.|.+.|.+++.             +++.+.. ... .    .+.-...+.+..+|++... .+.  ...
T Consensus       387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~--~~~  464 (916)
T 3pih_A          387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRS--ATT  464 (916)
T ss_dssp             TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSB--GGG
T ss_pred             cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCC--ccc
Confidence            3345678889999999976532             1111110 001 0    1111244667788887542 222  345


Q ss_pred             hhhh--HHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDN--LDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~--~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++++  ++++||++|..  +|+  ++||||||+ ||+.....++ ++++++++.|.++++|
T Consensus       465 LSGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          465 LSGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             CCHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence            6665  45999999998  766  999999999 9999999999 9999998779898877

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.51  E-value=2.1e-07  Score=73.90  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=43.7

Q ss_pred             HhhhhhHH--HHH------HHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           79 EHLEDNLD--DWL------AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        79 ~~l~~~~~--~~L------a~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ..+++|++  +.|      |++++.  +|+++|+||||+ ||+.++..+. ++++++.+.|.+++++
T Consensus        56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiiv  119 (148)
T 1f2t_B           56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV  119 (148)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred             hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEE
Confidence            45666654  433      478888  999999999999 9999999988 8888886667777665

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.50  E-value=6.1e-08  Score=86.49  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~   40 (248)
                      ++++||+|||||||||++++|.+++.  +.+|.+.+...|.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            57999999999999999999999987  5678888877664

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.48  E-value=6.1e-08  Score=89.43  Aligned_cols=38  Identities=32%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -+++|+|||||||||+++++.|++++.+|+|.+.+.++
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            36899999999999999999999999999999998654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=6.7e-08  Score=85.14  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE---eccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i---~~~d~   40 (248)
                      .+++++||||||||||+++|+|+.+|+.|+|.+   .|.+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~  210 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT  210 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence            468999999999999999999999999999998   66554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.46  E-value=1.6e-07  Score=83.62  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++|+||||+||||++..|++++.+.+|+|.+.+.|+
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            357899999999999999999999999999999999886

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.46  E-value=5.3e-07  Score=80.56  Aligned_cols=116  Identities=12%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+.|.||+|+||||+++.+++.+.+.. ..+...+...         ..+..+  .+..+.+.++........ ......
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~--~~~~l~~~l~~~~~~~~~-~~~~~~  113 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTA--IIGEIARSLNIPFPRRGL-SRDEFL  113 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHH--HHHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHH--HHHHHHHHhCccCCCCCC-CHHHHH
Confidence            688999999999999999999887652 3333332111         011111  134455555543211000 011111


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV  136 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~---~~~~ii~v  136 (248)
                          ..+...+.....|.++++||+..++......+. .++..+..   .+..+|++
T Consensus       114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~  165 (389)
T 1fnn_A          114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV  165 (389)
T ss_dssp             ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred             ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence                222222222226889999999999877766655 55554443   34455444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.46  E-value=6.2e-08  Score=80.03  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++|+||+||||||+++.|++.+++.+|.+.+.+.|.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            368999999999999999999999988899999887764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.44  E-value=2.2e-06  Score=66.49  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999999999974

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.44  E-value=9e-06  Score=75.40  Aligned_cols=39  Identities=28%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++++|++||||||++..|+.++...+.+|.+...|+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            468999999999999999999999888778898887775

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.43  E-value=6.9e-08  Score=79.79  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -.++|+||||||||||+++|.|+++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4689999999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.43  E-value=4.5e-06  Score=77.07  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +.+++++||+||||||++..|++++.+.+++|.+.+.|+
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            357889999999999999999999999999999998876

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.41  E-value=1.1e-07  Score=87.75  Aligned_cols=137  Identities=11%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-----------CCCCceEEEec-cCCC-CCCCCCCcc----cCh-hhhhh----HHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDPA-AENFDYPVA----MDI-RELIS----LED   61 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l-----------~~~~G~i~i~~-~d~~-~~~~~y~~~----~~i-~e~i~----~~~   61 (248)
                      .++|+|+||||||||+++|+|..           .|..|.+.+.+ .... .+...+...    ... .....    ++.
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~  238 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV  238 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence            47999999999999999999983           34444444432 1000 001111000    000 01000    111


Q ss_pred             HHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795           62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL  138 (248)
Q Consensus        62 ~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l  138 (248)
                      ++..+++.  ..   ..+.++..++  ..+++++..  .|.++++    + +|+... .....+.+.+.+.+.+++.   
T Consensus       239 lL~vvDls--~~---~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~---  303 (416)
T 1udx_A          239 LLYVLDAA--DE---PLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLP---  303 (416)
T ss_dssp             EEEEEETT--SC---HHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEE---
T ss_pred             hhEEeCCc--cC---CHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEE---
Confidence            12222333  11   1223333322  667778888  9999999    7 999877 4453555555555766653   


Q ss_pred             cccccccChHHHHHHHH
Q 025795          139 LDSQFITDVTKFISGCM  155 (248)
Q Consensus       139 ~d~~~~~d~~~~~s~~l  155 (248)
                      ++++.-.....++..+.
T Consensus       304 iSA~~g~gi~eL~~~i~  320 (416)
T 1udx_A          304 VSALTGAGLPALKEALH  320 (416)
T ss_dssp             CCTTTCTTHHHHHHHHH
T ss_pred             EECCCccCHHHHHHHHH
Confidence            44555555555555443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.41  E-value=1.2e-07  Score=77.57  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      .+++|+|||||||||++++|+|+++    .+.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~   39 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALA----EIKISIS   39 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence            5789999999999999999999864    4555543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.40  E-value=8.9e-07  Score=76.79  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++.++++|++|||||||++.+.|.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999875

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.39  E-value=1.1e-06  Score=79.35  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -++.|.||||||||||+..++....+.+|.+.+.......     .+           ...+++++.+..-..... .-.
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~-----~~-----------~ra~rlgv~~~~l~i~~~-~~~  124 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL-----DP-----------VYAKNLGVDLKSLLISQP-DHG  124 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-----CH-----------HHHHHHTCCGGGCEEECC-SSH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-----ch-----------HHHHHcCCchhhhhhhhc-cCH
Confidence            4688999999999999999999888888887665432111     00           034455554322111110 011


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      ... .++++.+.....|+++++|+-+.
T Consensus       125 e~~-l~~~~~l~~~~~~dlvVIDSi~~  150 (356)
T 3hr8_A          125 EQA-LEIVDELVRSGVVDLIVVDSVAA  150 (356)
T ss_dssp             HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred             HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence            122 34444444322799999998665

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.37  E-value=1.9e-07  Score=88.28  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+++|+|||||||||++++|+|+++|+.|.|.+.+.+
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            4589999999999999999999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.37  E-value=2.9e-08  Score=87.28  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      +++++|.||+|||||||++.|.+++.+.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            4789999999999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.34  E-value=1.4e-07  Score=83.78  Aligned_cols=39  Identities=18%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC--------CCCCceEEEeccCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA   41 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l--------~~~~G~i~i~~~d~~   41 (248)
                      -+++|+|+||||||||++.|.|..        .++.|+|.++|.++.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            478999999999999999999997        788999999987654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.34  E-value=3.1e-06  Score=68.11  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|++|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999853

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.33  E-value=2.7e-07  Score=81.38  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE---eccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i---~~~d~   40 (248)
                      .+++++||||||||||+++|. ..+|..|+|.+   .|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT  205 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence            478999999999999999999 99999999998   77554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.32  E-value=2.1e-06  Score=75.65  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -.++|+|++|+|||||++.+.|.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46899999999999999999974

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.32  E-value=2e-07  Score=75.64  Aligned_cols=39  Identities=13%  Similarity=0.222  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~   40 (248)
                      ..+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~   44 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP   44 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence            357899999999999999999998764 456665544433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.31  E-value=2.7e-07  Score=75.95  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      .+++|+|||||||||+++.|+|.+    |.+.+.+.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~   63 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF   63 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence            479999999999999999999976    7888877543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.31  E-value=1.7e-07  Score=78.76  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY-RHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~   28 (248)
                      .+++|+|||||||||++++|+ |++++
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC----C
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            478999999999999999999 99854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.30  E-value=3.3e-06  Score=65.37  Aligned_cols=25  Identities=36%  Similarity=0.624  Sum_probs=21.9

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MG-YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+ +-++++|+.|+|||||++.+.+-
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhC
Confidence            43 56899999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.30  E-value=3.5e-07  Score=82.73  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEe-ccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~-~~d   39 (248)
                      .+++|+||||||||||+++|+|... +..|.|.+. |.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g  254 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG  254 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence            3689999999999999999999999 999999886 543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.30  E-value=4.9e-06  Score=68.46  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|++|+|||||++.+.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999854

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.29  E-value=6.1e-06  Score=72.52  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ..++|+|++|+|||||++.|.|.
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999985

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.29  E-value=1.1e-05  Score=62.70  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            67899999999999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.27  E-value=1.2e-05  Score=63.77  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            56899999999999999999964

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.27  E-value=1.1e-05  Score=62.62  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            67899999999999999999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.27  E-value=4.4e-07  Score=74.25  Aligned_cols=30  Identities=27%  Similarity=0.486  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      +.+++|+|||||||||+++.|++.+.|..|
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            357899999999999999999999866544

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.27  E-value=3.2e-07  Score=73.16  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+.+++|+|||||||||+++.|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.26  E-value=9.2e-08  Score=82.00  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH---hCCCCCCceEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH   34 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~---g~l~~~~G~i~   34 (248)
                      .+++|+|||||||||+++.|+   |+..++.|.++
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            579999999999999999999   99888888887

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.24  E-value=1.5e-05  Score=69.18  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .+.++++|++|+|||||++.++|.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            467899999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.24  E-value=4.6e-07  Score=76.40  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+++|.|||||||||+++.|+|+    +|+|.+.+.+
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            57999999999999999999998    7889888764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.24  E-value=2.8e-07  Score=75.83  Aligned_cols=38  Identities=26%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceE--EEeccCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP   40 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i--~i~~~d~   40 (248)
                      +.+++|+|||||||||+.+.|++.+. ..|.+  ++++.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            36899999999999999999999987 67877  7776543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.23  E-value=4.4e-06  Score=66.04  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.23  E-value=6e-07  Score=73.86  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |+++++|+||+||||||+++.|++
T Consensus         1 m~~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            1 MTYIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999999998

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.23  E-value=1.5e-06  Score=80.39  Aligned_cols=152  Identities=16%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+++++|++|+||||++..|++.+...+.+|.+...|+.....       + +.  +..+.+..|+.-........+ ..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-------~-~q--L~~~~~~~gv~v~~~~~~~~d-p~  168 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-------Y-EQ--LKQLAEKIHVPIYGDETRTKS-PV  168 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-------G-GS--SHHHHHHSSCCEECCSSSCCS-SS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-------H-HH--HHHhhhccCcceEecCCCCCC-HH
Confidence            4689999999999999999999987777789999888743111       1 11  122333444421100000000 00


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV  162 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~  162 (248)
                      .-....+...  .  +.+++|+|+|+.+..  ...++ .-+..+...-..-.+++.+|+..-.+...        ....+
T Consensus       169 ~i~~~~l~~~--~--~~D~vIIDT~G~~~~--~~~l~-~~l~~i~~~~~~d~vllVvda~~g~~~~~--------~~~~~  233 (432)
T 2v3c_C          169 DIVKEGMEKF--K--KADVLIIDTAGRHKE--EKGLL-EEMKQIKEITNPDEIILVIDGTIGQQAGI--------QAKAF  233 (432)
T ss_dssp             TTHHHHHHTT--S--SCSEEEEECCCSCSS--HHHHH-HHHHHTTSSSCCSEEEEEEEGGGGGGHHH--------HHHHH
T ss_pred             HHHHHHHHHh--h--CCCEEEEcCCCCccc--cHHHH-HHHHHHHHHhcCcceeEEeeccccHHHHH--------HHHHH
Confidence            0011222222  4  789999999998543  12233 22233322111222334456543222211        11223


Q ss_pred             hhCC-C-eeeeecccccccc
Q 025795          163 QLEL-P-HVNILSKMDLVTN  180 (248)
Q Consensus       163 ~~~~-p-~~~vlsk~dll~~  180 (248)
                      +-.. | ..-|+||.|...+
T Consensus       234 ~~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          234 KEAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             HTTSCSCEEEEEECSSSCST
T ss_pred             hhcccCCeEEEEeCCCCccc
Confidence            3345 5 6668899998654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.23  E-value=2e-07  Score=82.67  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      -+++|+||||||||||+++|.|..++..|+|.+
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             CEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            368999999999999999999999999999987

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.23  E-value=1.3e-05  Score=62.12  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|+.|+|||||++.+.+-
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            67899999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.21  E-value=1.8e-06  Score=67.35  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.20  E-value=1.3e-05  Score=68.88  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++++|++|||||||++.+.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999885

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.20  E-value=1e-05  Score=63.82  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.19  E-value=3.9e-06  Score=77.65  Aligned_cols=98  Identities=14%  Similarity=0.191  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~--~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      .+.|.||+|+|||||++++++.+...  +..+.+.+               ..+.  ..++.+.+.-             
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~-------------  181 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKE-------------  181 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHT-------------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHc-------------
Confidence            46899999999999999999876322  22222211               1111  1122211110             


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~-~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                       ... ..+...+..  ++++|++||+.. .+. .....++ .++..+.+.|..++++
T Consensus       182 -~~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit  233 (440)
T 2z4s_A          182 -GKL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC  233 (440)
T ss_dssp             -TCH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred             -ccH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence             011 222333444  789999999998 443 5666666 7788776667776654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.19  E-value=2.8e-06  Score=78.83  Aligned_cols=132  Identities=12%  Similarity=0.018  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCC---------CCCCc------ccChhhhhhHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYPV------AMDIRELISLEDVMEEL   66 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~---------~~y~~------~~~i~e~i~~~~~m~~~   66 (248)
                      -.++|.|+||+|||||+..+++...+..| .|.+.+.....+.         ..+..      .++..+.-.+.+.++.+
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l  283 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSL  283 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999998766444 7877765532210         11100      12222222334444444


Q ss_pred             CCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHH-----hH---HHHHHHHHHHHHh-CCCeEEEE
Q 025795           67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----TH---VPVLRNFVDHLKS-RNFNVCAV  136 (248)
Q Consensus        67 ~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~-----~~---~~~~~~ll~~l~~-~~~~ii~v  136 (248)
                      +..+..- ......-...+ ...++.+..-.+|+++++|+|+. ....     ..   ..+. +.++.+.+ .+.+++++
T Consensus       284 ~~~~l~i-~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~  360 (454)
T 2r6a_A          284 SNAGIYI-DDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIAL  360 (454)
T ss_dssp             HSSCEEE-ECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEE
T ss_pred             hcCCEEE-ECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence            3322100 00000011223 34455555222799999999998 4221     12   2333 34455543 48888776


Q ss_pred             E
Q 025795          137 Y  137 (248)
Q Consensus       137 ~  137 (248)
                      +
T Consensus       361 s  361 (454)
T 2r6a_A          361 S  361 (454)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.18  E-value=1.8e-05  Score=64.03  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.18  E-value=4.5e-06  Score=83.06  Aligned_cols=74  Identities=24%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             HHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           62 VMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        62 ~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      .+..+|++.. .++.  ...++++  +++.||++|..  +|  .++||||||+ ||+.....++ +++++|++.|.++++
T Consensus       362 ~L~~vGL~~l~l~r~--~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv  436 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRS--TPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV  436 (842)
T ss_dssp             HHHHTTCTTSBTTCB--GGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred             HHHhCCCCcCCccCC--cCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence            5778898754 2222  3456665  45899999998  88  5999999999 9999999999 999999888999887


Q ss_pred             E-Eecc
Q 025795          136 V-YLLD  140 (248)
Q Consensus       136 v-~l~d  140 (248)
                      | |.++
T Consensus       437 VeHdl~  442 (842)
T 2vf7_A          437 VEHDLD  442 (842)
T ss_dssp             ECCCHH
T ss_pred             EcCCHH
Confidence            7 5443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.18  E-value=4.5e-06  Score=83.81  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             HHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           62 VMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        62 ~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      .+..+||+.. ..+.  ...++++  +++.||++|..  +  |+++||||||+ ||+.....++ +++++|++.|.++|+
T Consensus       487 ~L~~vGL~~l~ldR~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv  561 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV  561 (972)
T ss_dssp             HHHHHTCTTSBSSSB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred             HhhhCCCCccccCCc--cccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence            4778898753 2222  3456665  45899999998  7  59999999999 9999999999 999999878999887


Q ss_pred             E-Eec
Q 025795          136 V-YLL  139 (248)
Q Consensus       136 v-~l~  139 (248)
                      | |..
T Consensus       562 VeHdl  566 (972)
T 2r6f_A          562 VEHDE  566 (972)
T ss_dssp             ECCCH
T ss_pred             EecCH
Confidence            7 443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.17  E-value=5.1e-06  Score=71.45  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.++|-
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            56899999999999999999874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.16  E-value=8.8e-07  Score=71.33  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      +.+|+|||||||||++++|.+.+.+..|
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~~~   55 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGLSA   55 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence            6789999999999999999998876554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.15  E-value=1.4e-05  Score=63.02  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999975

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.15  E-value=1.1e-06  Score=70.26  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+++|+|||||||||+++.|++.+    |.+.+++-+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~   41 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDF   41 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGG
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcc
Confidence            679999999999999999999875    677776543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.14  E-value=1.2e-06  Score=72.75  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d   39 (248)
                      .+++|+|||||||||+++.|++.+++ ..+.+......
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~   46 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL   46 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence            57899999999999999999999876 44444433333

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.13  E-value=9.9e-06  Score=71.24  Aligned_cols=98  Identities=11%  Similarity=0.158  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~   83 (248)
                      .+.|.||+|+||||+++.+++.+...+..+...+.               .+.  ..++...+.              ..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~---------------~~~--~~~~~~~~~--------------~~   87 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA---------------DDF--AQAMVEHLK--------------KG   87 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH---------------HHH--HHHHHHHHH--------------HT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH---------------HHH--HHHHHHHHH--------------cC
Confidence            46899999999999999999877554444433321               111  111111110              00


Q ss_pred             hHHHHHHHHHccCCCCCEEEEeCCCccCH--HhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795           84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAVY  137 (248)
Q Consensus        84 ~~~~~La~~l~~~~~p~~lilDEPt~LD~--~~~~~~~~~ll~~l~~~~~~ii~v~  137 (248)
                      .. ..+...+ .  ++++|++||+..+..  .....+. .++..+.+.+..++++.
T Consensus        88 ~~-~~~~~~~-~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~~  138 (324)
T 1l8q_A           88 TI-NEFRNMY-K--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILAS  138 (324)
T ss_dssp             CH-HHHHHHH-H--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred             cH-HHHHHHh-c--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEe
Confidence            11 1111122 3  689999999988544  5666666 77777766666665543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.13  E-value=9.4e-05  Score=59.01  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +-++|+|++|+|||||++.+.|...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5689999999999999999998654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.13  E-value=4.9e-06  Score=66.74  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            67899999999999999999873

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.11  E-value=2.8e-05  Score=61.93  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            45789999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.10  E-value=3.8e-07  Score=75.92  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC---CCCCceEEE
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI   35 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l---~~~~G~i~i   35 (248)
                      +..++|+||+||||||+++.|++.+   .++.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            3689999999999999999999865   455555544

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.10  E-value=3.8e-06  Score=68.28  Aligned_cols=57  Identities=11%  Similarity=0.123  Sum_probs=42.5

Q ss_pred             HHhhhhhHH--HHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           78 MEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        78 ~~~l~~~~~--~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ...+++|.+  ++||++++.  +.+|+++|+|||++ ||+.+...+. ++++++.+. .+++++
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi  123 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI  123 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence            355666654  788888864  11579999999999 9999999999 888888543 445444

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.09  E-value=6.2e-06  Score=68.29  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      -.+.|.||+|+||||+++.++......+..+.+.
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~   86 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYI   86 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            3578999999999999999998765444444443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.09  E-value=3.6e-05  Score=66.29  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.|.+-
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999998763

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.07  E-value=1.6e-06  Score=70.71  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.++|+|+||||||||++.++|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            678999999999999999999975

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.07  E-value=2.2e-05  Score=62.85  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            678999999999999999999863

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.07  E-value=4.6e-05  Score=63.39  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999999863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.07  E-value=6.3e-05  Score=61.43  Aligned_cols=67  Identities=15%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             hCCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH--HHHHHH
Q 025795          164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRLLSQ  241 (248)
Q Consensus       164 ~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~--~~~~~~  241 (248)
                      -+.|.+-|.||+|+.......+..         .+.....- .    .....++...++...|.+++..+.+  ..++..
T Consensus       133 ~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  198 (204)
T 4gzl_A          133 PNTPIILVGTKLDLRDDKDTIEKL---------KEKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE  198 (204)
T ss_dssp             SSCCEEEEEECHHHHTCHHHHHHH---------HHTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred             CCCCEEEEEechhhccchhhhhhh---------hccccccc-c----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence            378999999999998754211111         11100000 0    1223345556777889999999987  777766


Q ss_pred             Hhh
Q 025795          242 IMK  244 (248)
Q Consensus       242 id~  244 (248)
                      |-+
T Consensus       199 l~~  201 (204)
T 4gzl_A          199 AIR  201 (204)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.06  E-value=2.5e-06  Score=74.05  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      +++|+||||||||||+++++|...+  +.+.+.|.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l   80 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL   80 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence            5899999999999999999998876  6787776543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.04  E-value=3.5e-05  Score=61.19  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999854

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.03  E-value=6.2e-05  Score=68.61  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      +.++++|+.|+|||||++.|.|....
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~~~   34 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIWTS   34 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccc
Confidence            67899999999999999999996543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.03  E-value=5.9e-05  Score=70.56  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.++|||||++.|.|.
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~   42 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEI   42 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHCC
Confidence            57899999999999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.01  E-value=8.1e-06  Score=70.00  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.|+|||||++.+.|-
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999999973

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.00  E-value=1.3e-05  Score=65.34  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      -.+.|.||+|+||||+++.++......++.+.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~   87 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI   87 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            468899999999999999999877655555443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.00  E-value=4.1e-06  Score=76.57  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh------------CCCCCCceEEEec
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN   37 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g------------~l~~~~G~i~i~~   37 (248)
                      ...++|+|+||+|||||+++|+|            .+.|..|.+.+.+
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            46789999999999999999999            5668889888875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.99  E-value=5.4e-05  Score=71.28  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      .+++|+|++||||||++..|+..+...+.++.++..|+
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            57899999999999999999987765555788887776

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.96  E-value=6.2e-05  Score=58.56  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|+.|+|||||++.+.+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5689999999999999999987

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.96  E-value=3.2e-05  Score=74.20  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEecc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL   38 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~   38 (248)
                      .++|+||||+||||++++|++.+++.. |.+.+.+.
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~   97 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN   97 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred             EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence            578999999999999999999998887 56665543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.96  E-value=5.1e-06  Score=67.48  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.96  E-value=0.00013  Score=63.49  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|+.|||||||++.|.|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999964

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.94  E-value=7.3e-06  Score=67.38  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+++|+|++||||||+++.|++.++
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999999999999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.94  E-value=0.00017  Score=64.42  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++|+|.+|+|||||++.|.|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.94  E-value=3.1e-05  Score=73.09  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh--CCCCCCceEEEeccCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i~i~~~d~~~   42 (248)
                      ++|.|++||||||+++.|..  +.+.+.+++.+...|+..
T Consensus       170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            67999999999999999876  556677889888888864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.94  E-value=4.3e-06  Score=68.46  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +.++|+|+|||||||+++.|++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            5799999999999999999999

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.94  E-value=4e-06  Score=69.61  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -.++|+||+|||||||++.|.+..+
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.93  E-value=2.9e-06  Score=80.81  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEE-Eec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~-i~~   37 (248)
                      .+++|+|+|||||||++++|+|.+.+.+| ++. +++
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            67899999999999999999999999886 675 444

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.92  E-value=4.2e-06  Score=68.07  Aligned_cols=40  Identities=15%  Similarity=0.012  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      |..+++|+|++|||||||++.|.+.+++.+.++.....++
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            4567899999999999999999998776655665555444

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.92  E-value=4.2e-05  Score=71.58  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.+.|.||+|+||||+++++++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468899999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.92  E-value=0.00025  Score=61.03  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .-++|+|.+|+|||||++.+.|.-
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.91  E-value=0.00014  Score=63.84  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|++|+|||||++.+.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.91  E-value=6.6e-06  Score=65.47  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |+.+++|.|++||||||+++.|+.
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHh
Confidence            788999999999999999999997

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.89  E-value=4.4e-06  Score=67.57  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      +.+++|+|++||||||+++.+++.+.+.++.+.+.+
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            367899999999999999999999887777775543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.88  E-value=9.9e-06  Score=72.69  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             CCEEEEeCCCccCHH-hHHHHHHHHHHHHHhCCCeEEEEEecccccc--cChHHHHHHHHHHHHHHH--hhCCCeeeeec
Q 025795           99 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS  173 (248)
Q Consensus        99 p~~lilDEPt~LD~~-~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~~~vls  173 (248)
                      .++.|.|.|+..+.. ..+.+....++.+.+.   -+++|++|+...  .++..-+..+.-.+...-  ..+.|.+-|+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~---d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N  282 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT---RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN  282 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC---CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhc---cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            568999999974421 1112232445555432   235566776553  344433332222222211  24789999999


Q ss_pred             ccccccc
Q 025795          174 KMDLVTN  180 (248)
Q Consensus       174 k~dll~~  180 (248)
                      |+|+...
T Consensus       283 K~Dl~~~  289 (342)
T 1lnz_A          283 KMDMPEA  289 (342)
T ss_dssp             CTTSTTH
T ss_pred             CccCCCC
Confidence            9999764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.87  E-value=7.3e-06  Score=69.54  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      .++|+|||||||||+++++++...  .|.+.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~   83 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS   83 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence            589999999999999999999875  566766654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.86  E-value=2.7e-05  Score=67.58  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      ..+.+.||+|+||||+++.+++.+...++.+...+.....      ...      ...   +.+|..+...     ..-.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~------~~~------~~~---~l~g~~~~~~-----~~~~  107 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM------EKH------AVS---RLIGAPPGYV-----GYEE  107 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC------STT------HHH---HHHCCCTTST-----TTTT
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc------ccc------cHH---HhcCCCCccc-----cccc
Confidence            4689999999999999999999988877776665542211      100      111   1123221100     0000


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH  125 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~  125 (248)
                      .   ..+..++... ...++++||...+++.....+. +++..
T Consensus       108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~  145 (311)
T 4fcw_A          108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD  145 (311)
T ss_dssp             C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred             c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence            0   1223333331 4479999999889887776666 55554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.85  E-value=6.2e-06  Score=67.55  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999999865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.84  E-value=9.3e-05  Score=64.98  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++++|++|+|||||++.+.+-.
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            568999999999999999988753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.84  E-value=0.00051  Score=63.38  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .-++++|+.++|||||++.|.+.
T Consensus        18 ~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           18 VNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46899999999999999999654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.83  E-value=6.9e-06  Score=65.97  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEec
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN   37 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~   37 (248)
                      ..+++|+|++||||||+++.|++.+++ .|  .+.+++
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~   41 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG   41 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence            357899999999999999999998766 45  444444

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.83  E-value=3.7e-05  Score=69.34  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      -++.|.||+|||||||+..++......++.+.+...
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            468899999999999999888765544556666543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.83  E-value=1e-05  Score=69.82  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      .++|+||||||||||++++++...  .|.+.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~  107 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS  107 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred             eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence            589999999999999999999875  677766654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.79  E-value=4e-05  Score=65.84  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|++|+|||||++.+.|-
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999974

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.78  E-value=0.00014  Score=58.30  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            6789999999999999999987

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.78  E-value=0.00016  Score=64.57  Aligned_cols=23  Identities=17%  Similarity=0.197  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++.|.||+|||||||+..++..
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.77  E-value=6e-06  Score=68.32  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEec
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN   37 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~   37 (248)
                      +.+++|+|++||||||+++.|++.+.+..|  .+.+++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~   62 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   62 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence            467899999999999999999999876666  555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.77  E-value=2.1e-06  Score=76.35  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC----CCCCceEEEec
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVN   37 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l----~~~~G~i~i~~   37 (248)
                      .+++.||||+|||||+++++|.+    .+.+|.+...+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~   90 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ   90 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence            57899999999999999999987    45555554433

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.76  E-value=9.7e-05  Score=66.82  Aligned_cols=117  Identities=14%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -++.|.||+|||||||+..++......++.+.+...+....           ..     .++.+|+....-.+.... -.
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~~-~~  137 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQPD-NG  137 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECCS-SH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecCC-cH
Confidence            35788999999999999888765444456777766543211           00     234445432210010000 11


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCH----H---------hHHHHHHHHHHHHH----hCCCeEEEEE
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHLK----SRNFNVCAVY  137 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~----~---------~~~~~~~~ll~~l~----~~~~~ii~v~  137 (248)
                      +.+ .++++.+.....++++++|..+.+-+    .         .+...+.+++++|.    +.+.++++++
T Consensus       138 e~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n  208 (366)
T 1xp8_A          138 EQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN  208 (366)
T ss_dssp             HHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence            222 33444444322789999999998432    0         12122236666663    4577776663

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.76  E-value=0.00027  Score=65.29  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA   41 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~   41 (248)
                      +.+++++|++|+||||++..|+..+... +.+|.+...|+.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~  140 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY  140 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3578889999999999999999888776 678999888874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.73  E-value=6.1e-06  Score=73.16  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      .++|.||+|+||||+++.+++.+.+.
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999877553

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.72  E-value=0.0016  Score=59.08  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.|+|||||++.|.+.
T Consensus        12 ~~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A           12 VNVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhh
Confidence            56899999999999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.72  E-value=0.00015  Score=66.65  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|.+|+|||||++.+.|-
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Confidence            56899999999999999999975

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.71  E-value=4.6e-05  Score=64.57  Aligned_cols=114  Identities=13%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH--
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME--   79 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~--   79 (248)
                      +..+.+.|+.|+||||++-.++..+...+-+|.+...|+....             ......  -++...........  
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~-------------~~~al~--~gl~~~~~~~~~~~~~   70 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA-------------ETEALL--NGLPQQPLLRTEYRGM   70 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH-------------HHHHHH--TTSCBCCCEEEEETTE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh-------------hHHHHh--cCccccCcceeecCCc
Confidence            4678899999999999977777655544457877777763210             011111  12222110000000  


Q ss_pred             hhhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ...+   ..+..++..  .|+++|+|||+.  .+...+...+ +.+..+...|..++.+
T Consensus        71 ~~~e---~~l~~~L~~--~pdlvIVDElG~~~~~~~r~~~~~-qDV~~~l~sgidVitT  123 (228)
T 2r8r_A           71 TLEE---MDLDALLKA--APSLVLVDELAHTNAPGSRHTKRW-QDIQELLAAGIDVYTT  123 (228)
T ss_dssp             EEEE---CCHHHHHHH--CCSEEEESCTTCBCCTTCSSSBHH-HHHHHHHHTTCEEEEE
T ss_pred             cccc---ccHHHHHhc--CCCEEEEeCCCCCCcccchhHHHH-HHHHHHHcCCCCEEEE
Confidence            0010   112222335  899999999984  4433333334 3344454668777655

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.71  E-value=1.7e-05  Score=63.23  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+.++.|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            357899999999999999999998764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.70  E-value=5.2e-05  Score=67.22  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      .+.|.||+|+||||+++.+...+..
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999987643

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.70  E-value=1.5e-05  Score=73.21  Aligned_cols=55  Identities=9%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             hhhhHH--HHHHHHHccC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        81 l~~~~~--~~La~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++++++  ++||++++..  .+|+++|+|||++ ||+..+..+. ++++++.+.+.+++++
T Consensus       334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~  393 (430)
T 1w1w_A          334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI  393 (430)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence            455543  7788888720  1799999999999 9999999988 8888875556666555

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.69  E-value=0.00012  Score=64.73  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|.||+|||||||+..++...
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHH
Confidence            468899999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.69  E-value=2.6e-05  Score=65.78  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      ..+++|.||+||||||+++.|++.+.+ ++.+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            467899999999999999999999988 7776544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.67  E-value=2.3e-05  Score=61.84  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +.+|+|||||||||++.+|.-
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999974

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.67  E-value=0.00017  Score=56.02  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i   33 (248)
                      -+.|.||+|+|||++.+.+.......++.+
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~   55 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEF   55 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence            367999999999999999998765544443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.66  E-value=1.9e-05  Score=64.02  Aligned_cols=40  Identities=18%  Similarity=0.043  Sum_probs=32.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      +.+++|+|++||||||++..|.+.++..+-+|.+...++.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            3578999999999999999999988766557777766553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.66  E-value=2.2e-05  Score=61.89  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|+||+||||||+++.|+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998764

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.65  E-value=3.4e-05  Score=72.61  Aligned_cols=51  Identities=20%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             hhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           82 EDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        82 ~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +++.  ++.||++++.  +|  +++|||||++ ||+.+...+. ++++++.+ |.++++|
T Consensus       399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i  454 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV  454 (517)
T ss_dssp             CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE
T ss_pred             CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence            5554  3899999999  99  9999999999 9999999999 99999876 7787766

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.65  E-value=6e-05  Score=68.23  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      .++++|+.++|||||++.|.
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999887

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.65  E-value=0.00025  Score=66.14  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|+.|+|||||++.|.+.
T Consensus        34 ~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           34 LSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEEESCGGGTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.64  E-value=2.4e-05  Score=61.40  Aligned_cols=20  Identities=40%  Similarity=0.590  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSL   22 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l   22 (248)
                      .+++|.||+||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.63  E-value=0.00013  Score=67.42  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ...++|+|++|+|||||++.|.|
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35789999999999999999987

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.61  E-value=0.00011  Score=67.74  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ...++|+|++|+|||||++.+.|
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999986

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.61  E-value=0.00054  Score=58.61  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.+.|.||+|+||||+++.+++.+
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            357899999999999999999865

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.61  E-value=4.2e-05  Score=69.09  Aligned_cols=44  Identities=14%  Similarity=0.076  Sum_probs=36.5

Q ss_pred             hhhhhHH--HHHHHHHc---------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        80 ~l~~~~~--~~La~~l~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      .++++++  +.||++++         .  +|+++|+|||++ ||+..+..++ +++.++
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~  320 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV  320 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence            4555543  78899998         7  999999999999 9999998888 777665

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.61  E-value=3.3e-05  Score=61.94  Aligned_cols=25  Identities=40%  Similarity=0.659  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +..++|+|++||||||+++.|+..+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.60  E-value=2.4e-05  Score=62.46  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+||+||||||+.+.|+..+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            368899999999999999998754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.60  E-value=0.00029  Score=68.76  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.++|+|+.|+|||||++.|.|.-
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3678999999999999999999853

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.60  E-value=3.6e-05  Score=61.67  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |+.+++|.|++||||||+++.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.60  E-value=3.1e-05  Score=69.47  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.++++|++|+|||||++.++|..
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999999854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.59  E-value=0.00049  Score=63.63  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|.+|+|||||++.+.|.
T Consensus       196 ~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          196 IQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ceeEEecCCCCCHHHHHHHHhCC
Confidence            56899999999999999999964

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=3.3e-05  Score=63.19  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|+||+||||||+.+.|++.+
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.58  E-value=0.00035  Score=64.34  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.|+|||||++.|.+.
T Consensus         7 ~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            7 LNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            56899999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.57  E-value=3.1e-05  Score=61.26  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |+.+++|.|++||||||+.+.|+..+
T Consensus         1 m~~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            1 MTEPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            66678999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.57  E-value=2.6e-05  Score=64.09  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+++|+||+||||||+++.|...++
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            5688999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.55  E-value=4.7e-05  Score=62.94  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +++++|.|++||||||+++.|++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999998

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.55  E-value=6.9e-05  Score=70.07  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.|.
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999998764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.55  E-value=0.0007  Score=65.72  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM   33 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i   33 (248)
                      ..++|+|++|+|||||++.|.+...+  ..|+|
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            46899999999999999999976654  45666

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.54  E-value=1.1e-05  Score=66.14  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      +++|.|++||||||+++.|...+...+..+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~   33 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            68899999999999999999988765445543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.54  E-value=0.00023  Score=61.36  Aligned_cols=24  Identities=29%  Similarity=0.671  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..+.|.||+|+||||+++.+++..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            468899999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.8e-05  Score=61.04  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|.|++||||||+++.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.53  E-value=4.4e-05  Score=62.18  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |+.+++|.|++||||||+++.|++.+
T Consensus         1 m~~~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            1 MRGIVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            65689999999999999999999854

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.53  E-value=0.00014  Score=56.36  Aligned_cols=43  Identities=9%  Similarity=-0.004  Sum_probs=30.2

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS  141 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~  141 (248)
                      +...+++||...+....+..+. +++.+-...+.++|++...+.
T Consensus        75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~~  117 (143)
T 3co5_A           75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYAA  117 (143)
T ss_dssp             TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEECT
T ss_pred             CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCCH
Confidence            5679999999999888877776 666654334566766644443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.53  E-value=5.9e-05  Score=61.15  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.+++|+|++||||||+++.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            478999999999999999999985

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.53  E-value=3.9e-05  Score=65.37  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      +..++++|++||||||+.+.|++.+.  .+.+.+++
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~   65 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG   65 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence            46889999999999999999998764  24455544

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.0006  Score=65.59  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.|.+-
T Consensus       168 lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          168 LSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCHHHHHHHHHHh
Confidence            56899999999999999999865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.52  E-value=5.4e-05  Score=60.88  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+|++||||||+++.|+..+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999998754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.52  E-value=0.00057  Score=62.26  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.|+|||||++.|.|.
T Consensus        11 ~~I~iiG~~~~GKSTLi~~L~g~   33 (410)
T 1kk1_A           11 VNIGMVGHVDHGKTTLTKALTGV   33 (410)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999975

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.51  E-value=7.2e-05  Score=58.83  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.++|+|++|+|||||++.+.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999999863

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.51  E-value=0.00013  Score=64.24  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMH   34 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~   34 (248)
                      ..+.|.||+|+|||+|+++++..+. ..+..+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~  185 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT  185 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEE
Confidence            4678999999999999999998655 3333443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.50  E-value=3.7e-05  Score=61.70  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |+.+++|+|++||||||+.+.|+..+
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            66679999999999999999998743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.49  E-value=8.4e-05  Score=68.49  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +-++|+|+||+|||||++.+.|...
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcc
Confidence            5689999999999999999999753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.48  E-value=4.5e-05  Score=61.67  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|.|++||||||+++.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.48  E-value=6e-05  Score=60.35  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      ..++|.|++||||||+++.|+..+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999987653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.46  E-value=8e-05  Score=60.63  Aligned_cols=31  Identities=32%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i   33 (248)
                      +..++|.|++||||||+++.|+..+... |.+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~   34 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK-RDV   34 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT-SCE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCE
Confidence            3689999999999999999999876653 344

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.45  E-value=6.9e-05  Score=64.05  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|+||+||||||+.+.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            468999999999999999999764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.44  E-value=0.0002  Score=65.71  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      -+++|+|||||||||++++|++++.+.
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            468999999999999999999977653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.44  E-value=6.9e-05  Score=60.08  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +..++++||+||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.44  E-value=6.7e-05  Score=63.78  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +++++|.||+||||||+++.|++.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.44  E-value=6.3e-05  Score=60.26  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|++|+|||||++.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            568999999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.44  E-value=7.2e-05  Score=59.90  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+++|.|++||||||+++.|+..+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36789999999999999999998654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=7.3e-05  Score=59.54  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++|+|++|+|||||++.++|.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67899999999999999999974

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.43  E-value=7e-05  Score=60.61  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            578999999999999999998654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.42  E-value=0.0016  Score=64.13  Aligned_cols=77  Identities=8%  Similarity=0.106  Sum_probs=43.3

Q ss_pred             CCCEEEEeCCCccC------HHh-HHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeee
Q 025795           98 DDDYLVFDCPGQIE------LFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN  170 (248)
Q Consensus        98 ~p~~lilDEPt~LD------~~~-~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~  170 (248)
                      .+++.++|.||-..      +.. ...+. +++.+.......+ +++++|+..-......    +......-..+.|.+-
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~-~lv~~yi~~~aDl-IL~VVDAs~~~~~~d~----l~ll~~L~~~g~pvIl  222 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCL-ILAVSPANSDLANSDA----LKIAKEVDPQGQRTIG  222 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHH-HHHHHHHTSTTEE-EEEEEETTSCSSSCHH----HHHHHHHCTTCSSEEE
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHH-HHHHHHHhcCCcE-EEEEEcCCCCcchhHH----HHHHHHHHhcCCCEEE
Confidence            56899999999532      211 22333 5566654433334 4556776542212211    0111222245789999


Q ss_pred             eecccccccc
Q 025795          171 ILSKMDLVTN  180 (248)
Q Consensus       171 vlsk~dll~~  180 (248)
                      |+||+|++.+
T Consensus       223 VlNKiDlv~~  232 (772)
T 3zvr_A          223 VITKLDLMDE  232 (772)
T ss_dssp             EEECTTSSCT
T ss_pred             EEeCcccCCc
Confidence            9999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.41  E-value=8.9e-05  Score=66.97  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .++|+|++|||||||++.++|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            489999999999999999998753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.40  E-value=0.00035  Score=65.01  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.|.
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            56899999999999999999873

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.40  E-value=9.1e-05  Score=64.16  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |+.++.|+|++||||||+.+.|+.
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            788899999999999999999997

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.39  E-value=0.00012  Score=65.46  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      .+.|.|++|+|||||+..++......++.|.+....
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            578999999999999999987665556677766543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.39  E-value=0.001  Score=55.87  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.|.||+|+||||+++.++..+
T Consensus        41 ~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999854

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.39  E-value=8.3e-05  Score=61.46  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.+|+|||||||||++.+|.-.
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999998743

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.38  E-value=8e-05  Score=67.67  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      -+++|+||||||||||++.++|..   +|.+..
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            478999999999999999999953   566654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.37  E-value=0.00023  Score=64.06  Aligned_cols=45  Identities=13%  Similarity=0.192  Sum_probs=35.6

Q ss_pred             HHHHHHccCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        88 ~La~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++|+++..  + |+++|||||++ ||+..+..+. ++++++.+ +.+++++
T Consensus       296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~  342 (371)
T 3auy_A          296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII  342 (371)
T ss_dssp             HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred             HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence            45677777  8 99999999999 9999999988 77777643 3455544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.37  E-value=7.5e-05  Score=64.03  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ...++|+|++||||||+++.|++.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3568999999999999999999865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.36  E-value=0.00011  Score=62.46  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +++++|.|++||||||+++.|+..+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            47899999999999999999988543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.36  E-value=0.0001  Score=60.08  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +++++|+|++||||||+++.|+..+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999998754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.35  E-value=0.0013  Score=63.07  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ..++|+|+.|+|||||++.|.+.
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~   28 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGS   28 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHhcc
Confidence            67899999999999999999863

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.35  E-value=0.00012  Score=58.27  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|++|+|||||++.+.|..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.35  E-value=0.00011  Score=59.54  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +..++|.|+.||||||+++.|+..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999987

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.35  E-value=0.00089  Score=60.96  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.++|||||++.|.|.
T Consensus         9 ~~I~iiG~~d~GKSTLi~~L~g~   31 (408)
T 1s0u_A            9 VNIGMVGHVDHGKTSLTKALTGV   31 (408)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Confidence            57899999999999999999975

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.35  E-value=0.00014  Score=65.18  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+.+++|.||+||||||+.+.|+..+.
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence            456899999999999999999998664

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.33  E-value=0.00018  Score=60.74  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      .++.+.||.||||||++-.++..+...+.++.+.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            5788999999999998776665554444566665

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.32  E-value=0.00011  Score=61.67  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+|++||||||+++.|++.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3679999999999999999999743

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.32  E-value=0.00012  Score=58.99  Aligned_cols=25  Identities=32%  Similarity=0.581  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+|++||||||+++.|+..+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.31  E-value=0.00012  Score=59.71  Aligned_cols=26  Identities=31%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +..++|.|++||||||+++.|+..+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999997653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.31  E-value=0.0028  Score=58.67  Aligned_cols=23  Identities=39%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|..++|||||++.|.+.
T Consensus         8 ~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            8 INVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.30  E-value=0.00013  Score=58.99  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ..++|+|++||||||+++.|+..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999975

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.30  E-value=0.00019  Score=63.11  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+.||+|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999998764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.30  E-value=0.00011  Score=67.19  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ...++|+|+||+|||||++.|+|.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            356899999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.30  E-value=0.00011  Score=63.95  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      +..+.|.||+||||||+++.|...+.  .+.+.+.
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is   65 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID   65 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence            46789999999999999999987543  2444443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.30  E-value=6.1e-05  Score=71.49  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      -+++++||||+||||+++++++.+.+..|.+.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            36889999999999999999999987777765544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.29  E-value=0.00022  Score=64.32  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +++|+|||||||||++++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            689999999999999999997

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.28  E-value=0.00011  Score=66.38  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      .++|+||+||||||+++.+.+...+.++.+.+.+
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4689999999999999999988878888887754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.28  E-value=0.00021  Score=64.60  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |.+.++|+|++|+|||||++.++|-
T Consensus         1 m~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            6788999999999999999999983

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.28  E-value=0.00015  Score=58.98  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|.|++||||||+++.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999998654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.26  E-value=0.00014  Score=59.80  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|.||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.26  E-value=0.00014  Score=60.46  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +++|+||+||||+|.++.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.25  E-value=0.0047  Score=54.39  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..+.|.||+|+||||+++.++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            467899999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.24  E-value=0.00046  Score=55.68  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.|.||+|+||||+++.++..+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.24  E-value=9.1e-05  Score=59.07  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|.|++||||||+.+.|+..+
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.23  E-value=0.00016  Score=57.97  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +++|.|+.||||||+++.|+..+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.22  E-value=0.00016  Score=59.47  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|+||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.22  E-value=0.00011  Score=70.37  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .-++|+|+.++|||||++.|.+
T Consensus       178 ~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          178 VHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             EEEEEECCSSSTHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999999965

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.21  E-value=0.00015  Score=60.10  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+||+||||||+++.|+..+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.20  E-value=0.00017  Score=59.15  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+||+||||||+++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999987654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.20  E-value=7.3e-05  Score=66.19  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      +++.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   83 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN   83 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence            68999999999999999999887766655444443

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.20  E-value=0.00018  Score=59.84  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|++||||||+++.|+..+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999999754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.19  E-value=0.00021  Score=58.77  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++++|+|+.||||||+.+.++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999999975

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.19  E-value=0.00017  Score=57.65  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|++||||||+++.|+..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            357899999999999999998653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.18  E-value=0.0002  Score=59.25  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|++||||||+++.|+..+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            568999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.18  E-value=0.00022  Score=60.45  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +..++|.||+||||||+++.|+..+
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.18  E-value=0.00048  Score=57.29  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      ++|-|..|+||||+.-.++..+...+.+|.+.+.|+.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4558999999999999999988877789999999985

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.18  E-value=0.00015  Score=61.97  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +..++|.|++||||||+.+.|+..+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999997643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.17  E-value=0.00021  Score=61.92  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +++++|.|++||||||+++.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999985

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.17  E-value=0.0002  Score=58.45  Aligned_cols=26  Identities=27%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+++|.|++||||||+++.|+..+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999997654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00029  Score=57.78  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      ..++|+|++|||||||++.+.+..... .++.+.+.++
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~   67 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV   67 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence            578999999999999999999875443 4565555443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.15  E-value=0.00023  Score=55.98  Aligned_cols=23  Identities=43%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.15  E-value=0.00025  Score=59.57  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|+||+||||+|.++.|+..+
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.14  E-value=0.00028  Score=66.30  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      -.++|+||||+|||||++++++...  .+.+.+.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            3589999999999999999999875  67788877543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.14  E-value=0.0033  Score=55.25  Aligned_cols=35  Identities=9%  Similarity=0.160  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      -.+.|.|++|+|||||+..++...-..++.+.+..
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            36789999999999999988854433334555443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.14  E-value=0.00023  Score=60.28  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -.+.|.||+|+||||+++++++...
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcC
Confidence            3578999999999999999998753

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.14  E-value=0.0019  Score=56.59  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++.|.||+|||||||+..++.
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998885

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.13  E-value=0.00088  Score=63.13  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|.+|+|||||++.+.+-
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~~~   64 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLIGE   64 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.13  E-value=0.0016  Score=57.98  Aligned_cols=117  Identities=12%  Similarity=0.155  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH-CET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~-l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      ++.|.||+|||||||+-.++-. .+. .+|.+.+..-.    + .+.+           ..++.+|+....-...... -
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E----~-s~~~-----------~ra~~lGvd~d~llv~~~~-~   92 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE----F-GITP-----------AYLRSMGVDPERVIHTPVQ-S   92 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS----C-CCCH-----------HHHHHTTCCGGGEEEEECS-B
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc----c-hhhH-----------HHHHHhCCCHHHeEEEcCC-C
Confidence            4679999999999996655433 322 14555554311    0 1111           1356667654321111111 1


Q ss_pred             hhhHHHHHHHHH--ccCCCCCEEEEeCCCccCH----H-----------hHHHHHHHHHHH----HHhCCCeEEEEE
Q 025795           82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL----F-----------THVPVLRNFVDH----LKSRNFNVCAVY  137 (248)
Q Consensus        82 ~~~~~~~La~~l--~~~~~p~~lilDEPt~LD~----~-----------~~~~~~~~ll~~----l~~~~~~ii~v~  137 (248)
                      .+.+..+++..+  ....+|+++++|--+++=+    .           .+...+.+.+++    +++.+.+++++.
T Consensus        93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN  169 (333)
T 3io5_A           93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN  169 (333)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence            111113344454  3322799999998877311    0           222222244444    345788888874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.08  E-value=0.00028  Score=62.75  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+..++|+||+||||||+.+.|+..+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            566899999999999999999998653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.07  E-value=0.0048  Score=53.15  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.|.||+|+||||+++.++..+.
T Consensus        69 ~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999998887653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.06  E-value=0.00029  Score=58.70  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.06  E-value=0.00031  Score=55.42  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|.|+.||||||+.+.|+..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.06  E-value=0.00039  Score=55.98  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999973

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.06  E-value=0.00042  Score=56.22  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|++|+|||||++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999999976

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.04  E-value=8.2e-05  Score=65.04  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +++++|.||+||||||+++.|...+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999987543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.02  E-value=0.0011  Score=65.43  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      .++|+||+||||||++..+.+....
T Consensus       111 ~vii~gpTGSGKTtllp~ll~~~~~  135 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQFVLFDEM  135 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999998888665433

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.01  E-value=0.00034  Score=57.66  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.00  E-value=0.0018  Score=69.53  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -++.|.||+|+|||||+..+.--....++++.+....-.   +      +      ... ++.+|..-..-.+.+.+ -.
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~---~------~------~l~-a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---L------D------PIY-ARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC---C------C------HHH-HHHTTCCTTTCEEECCS-SH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc---c------C------HHH-HHHcCCCchhceeecCC-hH
Confidence            468899999999999998887654445666666532110   0      0      000 33444321111111111 11


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEecc
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLLD  140 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~~ii~v~l~d  140 (248)
                      +.. .++.+.++....|+++++||-..+-+..             .    .+.+.+++..+.+.+.++++++..-
T Consensus      1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~ 1564 (2050)
T 3cmu_A         1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 1564 (2050)
T ss_dssp             HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEE
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence            122 4444444322289999999987633321             2    2233355555556688887776543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.00  E-value=0.00037  Score=57.65  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|++||||||+++.|+..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999998765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.98  E-value=0.00042  Score=54.08  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            56899999999999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.96  E-value=0.00031  Score=63.23  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      +-++|+|++|+|||||++.|.|......+
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            55799999999999999999886444333

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.96  E-value=0.00054  Score=56.64  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSL   22 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l   22 (248)
                      |++++.+.|++||||||++..+
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~   25 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSM   25 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHH
Confidence            5678999999999999998765

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0095  Score=54.42  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +-++.+.||+|+|||++++++++...
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            34688999999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.95  E-value=0.00045  Score=53.51  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.95  E-value=0.00051  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.94  E-value=0.0005  Score=53.42  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.94  E-value=0.00048  Score=53.27  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|+.|+|||||++.+.+-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.94  E-value=0.00038  Score=53.94  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            56899999999999999999764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.92  E-value=0.00039  Score=57.18  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +++++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.92  E-value=0.0065  Score=53.62  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      .+.|.||+|+||||+++.++..+......+.+.+
T Consensus        72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            6789999999999999999988764434444443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.92  E-value=0.00056  Score=53.07  Aligned_cols=23  Identities=13%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999875

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=96.91  E-value=0.01  Score=60.99  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++++|+.|+|||||++.|.+.
T Consensus       297 lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          297 VNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHhh
Confidence            56899999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.90  E-value=0.00055  Score=53.62  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++|+|++|+|||||++.+.+-
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.90  E-value=0.00026  Score=65.22  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++-++|+|+.|+|||||++.+.+
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~~   56 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALVG   56 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999887765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.89  E-value=0.00055  Score=54.07  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.89  E-value=0.00047  Score=54.94  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            66899999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.89  E-value=0.0005  Score=53.86  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.88  E-value=0.00057  Score=52.82  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.88  E-value=0.00065  Score=52.77  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .+-++|+|++|+|||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            36789999999999999999976

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.87  E-value=0.00056  Score=57.18  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+|++||||||+++.|+..+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.86  E-value=0.00067  Score=55.79  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      +.++|+|++|+|||||++.+.+..... .++.+.+.+
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d   74 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGD   74 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECC
Confidence            678999999999999999998765443 445444444

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.85  E-value=0.0012  Score=52.91  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            67899999999999999877653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.85  E-value=0.00037  Score=54.98  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            6789999999999999998863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.85  E-value=0.00062  Score=53.20  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.84  E-value=0.0035  Score=54.78  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      .+.|.||+|+|||++++.+.......++
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~   54 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHACSARSDR   54 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHHSSCSSS
T ss_pred             cEEEECCCCchHHHHHHHHHHhCcccCC
Confidence            4679999999999999999987654333

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.83  E-value=0.00069  Score=53.04  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999863

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=96.83  E-value=0.0016  Score=53.90  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CCeEEEEEc-CCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~iiG-pnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus         1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (237)
T 1g3q_A            1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence            555666665 568999999999998887666689999998853

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.81  E-value=0.00076  Score=52.67  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.80  E-value=0.00071  Score=53.51  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.80  E-value=0.00075  Score=53.91  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.76  E-value=0.00087  Score=52.57  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.0029  Score=58.41  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +-++.+.||+|+|||++++++++...
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35789999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.75  E-value=0.00072  Score=58.92  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ..+.|.||+|+||||+++++++...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4688999999999999999998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.75  E-value=0.00081  Score=53.13  Aligned_cols=23  Identities=39%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.74  E-value=0.00072  Score=60.80  Aligned_cols=20  Identities=35%  Similarity=0.640  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      +.+|+|||||||||++.+|.
T Consensus        27 l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           27 IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999987

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.73  E-value=0.00085  Score=51.78  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++++|++|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999976

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.73  E-value=0.00085  Score=53.35  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.73  E-value=0.00087  Score=53.12  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.72  E-value=0.0013  Score=54.59  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~   38 (248)
                      -.+.|.|++|+|||||+..++-. ....++.+.+...
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~   67 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL   67 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence            46789999999999998765422 2222345555443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.72  E-value=0.00092  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.71  E-value=0.00093  Score=52.52  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.|.||+|+||||+++.++..+.
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999988653

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.70  E-value=0.001  Score=55.03  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~   34 (248)
                      |...++|=|+-||||||.++.|...+.. +..+.
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~   33 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI   33 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE
Confidence            6667889999999999999999998853 33443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.70  E-value=0.00093  Score=53.26  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.69  E-value=0.0016  Score=54.70  Aligned_cols=42  Identities=14%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             CCeEEEEEc-CCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~iiG-pnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL   43 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            555666654 567999999999999887767799999999844

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.69  E-value=0.0034  Score=50.64  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CCeEEEEE-cCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795            1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA   41 (248)
Q Consensus         1 ~~~~~~ii-GpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~   41 (248)
                      |+. ++|. +..|+||||+.-.++..+...+.+|.+.+.||.
T Consensus         1 M~v-i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~   41 (206)
T 4dzz_A            1 MKV-ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ   41 (206)
T ss_dssp             CEE-EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeE-EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            544 4455 778899999999999888776678999888864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.69  E-value=0.001  Score=56.28  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++|+|++|+|||||++.+.|.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999974

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.69  E-value=0.0032  Score=55.99  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++.|.||+|+|||||+..++..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            4689999999999999998754

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=96.68  E-value=0.0026  Score=52.82  Aligned_cols=40  Identities=10%  Similarity=0.037  Sum_probs=32.5

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCC
Q 025795            3 YAQLVI-GPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~ii-GpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~   42 (248)
                      .+++|. +..|+||||+.-.++..+... +.+|.+.+.|+..
T Consensus         5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~   46 (245)
T 3ea0_A            5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPF   46 (245)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTT
T ss_pred             eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCC
Confidence            455555 567899999999999988776 7799999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.68  E-value=0.0011  Score=58.73  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+||+|||||||...++..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999999765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.67  E-value=0.001  Score=53.06  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999999863

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.67  E-value=0.0043  Score=54.29  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.|.||+|+||||+++.++...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.67  E-value=0.0011  Score=52.17  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.66  E-value=0.0011  Score=52.65  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            6689999999999999999986

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.66  E-value=0.0011  Score=53.11  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.0012  Score=52.86  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            66899999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.65  E-value=0.001  Score=55.41  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~   34 (248)
                      ...++|.|+.||||||.++.|...+...+-.+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~   38 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ   38 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence            367889999999999999999998876554554

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.63  E-value=0.0011  Score=53.36  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.62  E-value=0.0042  Score=58.13  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..+.|.||+|+||||+++.++...
T Consensus       239 ~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECcCCCCHHHHHHHHHHHh
Confidence            357899999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.62  E-value=0.0011  Score=52.61  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            66899999999999999999974

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.62  E-value=0.053  Score=49.69  Aligned_cols=35  Identities=9%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~   37 (248)
                      -.+.|.|++|+|||||+..++...... +..|.+..
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            367899999999999999988765432 33555544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.61  E-value=0.0011  Score=52.08  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            5689999999999999999984

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.61  E-value=0.0012  Score=53.25  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            56899999999999999999974

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.60  E-value=0.0012  Score=53.80  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.|.||+|+||||+++.++..+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            678999999999999999987654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.60  E-value=0.0013  Score=52.37  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999873

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.0012  Score=52.43  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.60  E-value=0.00084  Score=54.34  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999998653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.59  E-value=0.0013  Score=52.93  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            66899999999999999999874

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.59  E-value=0.00092  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.59  E-value=0.0013  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.59  E-value=0.0012  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999873

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.59  E-value=0.0013  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.57  E-value=0.0014  Score=52.51  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.57  E-value=0.0014  Score=52.93  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.56  E-value=0.0013  Score=59.27  Aligned_cols=25  Identities=32%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ..++|+||+||||||+.++|++.+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3588999999999999999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.56  E-value=0.0014  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.56  E-value=0.0013  Score=52.57  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.55  E-value=0.0009  Score=60.50  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.++|+|++|+|||||++.+++.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45799999999999999999985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.0014  Score=53.40  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999998874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.54  E-value=0.0017  Score=57.52  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|.||+||||||+...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4678999999999999999999765

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.53  E-value=0.12  Score=47.94  Aligned_cols=149  Identities=17%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHH-HHhCCCCCCchhhhHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVM-EELGLGPNGGLIYCMEH   80 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m-~~~~L~~~~~~~~~~~~   80 (248)
                      -.+.|.|++|+|||||+..++-..... ++.|.+.....           +..+.  ...++ ...++............
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~-----------s~~~l--~~r~~~~~~~~~~~~~~~~~~g~  309 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE-----------SVEET--AEDLIGLHNRVRLRQSDSLKREI  309 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS-----------CHHHH--HHHHHHHHTTSCCTTCHHHHHHH
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC-----------CHHHH--HHHHHHHHcCCChhhccccccCC
Confidence            367899999999999998887654333 44565554321           22211  11111 12333322100000001


Q ss_pred             hh-hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc----cChHHHHHHH
Q 025795           81 LE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI----TDVTKFISGC  154 (248)
Q Consensus        81 l~-~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~----~d~~~~~s~~  154 (248)
                      +. ..+ ..+..++..  +.++.+.|+|++.++...   . ..++++. +.+..+++|=-+.....    .+....++.+
T Consensus       310 l~~~~~-~~~~~~~~~--~~~l~i~~~~~~~~~~~i---~-~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~  382 (503)
T 1q57_A          310 IENGKF-DQWFDELFG--NDTFHLYDSFAEAETDRL---L-AKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNL  382 (503)
T ss_dssp             HHTSHH-HHHHHHHHT--TTCEEEECCC---CHHHH---H-HHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHH
T ss_pred             CCHHHH-HHHHHHHhc--cCCEEEECCCCCCCHHHH---H-HHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHH
Confidence            11 111 222333333  556888888865554433   2 3334443 34677766622222111    1333445555


Q ss_pred             HHHHHHHH-hhCCCeeee
Q 025795          155 MASLSAMV-QLELPHVNI  171 (248)
Q Consensus       155 l~~~~~~~-~~~~p~~~v  171 (248)
                      +..+..+. ..+.|.+-+
T Consensus       383 ~~~Lk~lak~~~i~vi~~  400 (503)
T 1q57_A          383 MTKLKGFAKSTGVVLVVI  400 (503)
T ss_dssp             HHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHCCeEEEE
Confidence            55554443 467777643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.53  E-value=0.00089  Score=55.92  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++.+.||+|+||||++.+++..+
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.53  E-value=0.0014  Score=52.95  Aligned_cols=23  Identities=39%  Similarity=0.637  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.53  E-value=0.0011  Score=52.17  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      .+.|.||+|+||||+++.++..+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999886543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.53  E-value=0.0012  Score=60.48  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+|++||||||+++.++..+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578899999999999999998643

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.52  E-value=0.00043  Score=65.06  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +.+|+|+|||||||++.+|...
T Consensus        62 ~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           62 FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            6789999999999999999665

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0014  Score=53.14  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999973

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.51  E-value=0.0012  Score=51.75  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.+.+-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            66899999999999999999873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.51  E-value=0.0014  Score=53.51  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999975

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.49  E-value=0.0014  Score=55.40  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.||+||+||||||.++.|+..+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.49  E-value=0.0016  Score=52.45  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.|.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.49  E-value=0.0014  Score=54.88  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ..++|.|+.||||||+++.|+..++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            5689999999999999999998774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.49  E-value=0.0012  Score=52.87  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|+.|+|||||++.+.+
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5589999999999999999976

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.48  E-value=0.0017  Score=52.08  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999863

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.47  E-value=0.0015  Score=53.04  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+-++|+|++|+|||||++.+.+-.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3678999999999999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.47  E-value=0.0014  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.46  E-value=0.0018  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            56899999999999999999864

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=96.46  E-value=0.0032  Score=53.05  Aligned_cols=42  Identities=26%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             CCeEEEE-EcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLV-IGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~i-iGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |..+++| -|..|+||||+.-.|+..+...+.+|.+.+.|+..
T Consensus         1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   43 (263)
T 1hyq_A            1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   43 (263)
T ss_dssp             -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            5445555 46778999999999998887666689999988853

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=96.45  E-value=0.0028  Score=54.54  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=33.0

Q ss_pred             eEEEEEcC-CCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGp-nGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      .+++|.|+ .|.||||+.-.|+..+...+.+|.+++.|+..
T Consensus        83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~  123 (271)
T 3bfv_A           83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK  123 (271)
T ss_dssp             CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            46778876 78999999999998877666789999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.45  E-value=0.0027  Score=53.75  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      .+.|.||+|+||||+++.+.......++.+..
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~   62 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSSRWQGPFIS   62 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEE
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcCccCCCeEE
Confidence            46799999999999999999887654444433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.45  E-value=0.0014  Score=52.25  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.44  E-value=0.001  Score=56.63  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ..++|.|+.||||||+++.|+..+.
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6789999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.43  E-value=0.0017  Score=52.42  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999974

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.42  E-value=0.0017  Score=53.10  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            5689999999999999999986

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.41  E-value=0.0011  Score=52.26  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=10.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5689999999999999998874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.41  E-value=0.0063  Score=64.63  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      -++.|.||+|+|||||+..++......++.+.+...
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~  768 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA  768 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence            368899999999999999998876666667766543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.41  E-value=0.0019  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+|+.|+|||||++.+.+-.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            568999999999999999999753

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=96.41  E-value=0.0024  Score=55.80  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=33.1

Q ss_pred             eEEEEEcC-CCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGp-nGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      .+++|.|+ .|+||||+...|+..+...+.+|.+++.|+..
T Consensus       105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~  145 (299)
T 3cio_A          105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR  145 (299)
T ss_dssp             CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            46788887 69999999999998877666789999988853

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.40  E-value=0.0023  Score=57.19  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|+||.|||||||...|+..+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            478999999999999999999876

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.38  E-value=0.0021  Score=51.74  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+-++++|++|+|||||++.+.+-.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcC
Confidence            3568999999999999999988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-41

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  140 bits (352), Expect = 2e-41
 Identities = 51/225 (22%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE 65
           + +G AGSGK+T      R+ E   +    VNLD   +   Y  ++D+RE +++E++M E
Sbjct: 4   VFVGTAGSGKTTLTGEFGRYLEDNYKV-AYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 66  LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125
            G GPNG ++   + L +  +++L + L    ++DY++ D PGQ+E F         +++
Sbjct: 63  -GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121

Query: 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE 185
           L         VY+ D + +     +      +L   ++L    +  L+K+DL++ +++  
Sbjct: 122 L----PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 177

Query: 186 DYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPL 229
                E    L+   +        +   +  ++ E    V  + L
Sbjct: 178 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.96
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.91
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.89
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.86
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.44
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.23
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.63
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.58
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.53
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.53
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.52
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.42
d1okkd2	207	GTPase domain of the signal recognition particle r	98.41
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.36
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.34
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.25
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.25
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.21
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.2
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.17
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.15
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.15
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.13
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.1
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.08
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.08
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.06
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.03
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.03
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.85
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.84
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.83
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.81
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.79
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.77
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.77
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.77
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.74
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.71
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.7
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.66
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.64
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.61
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.58
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.56
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.55
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.52
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.51
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.48
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.48
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.45
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.44
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.43
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.41
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.41
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.41
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.38
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.36
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.34
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.34
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.33
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.32
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.26
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.26
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.25
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.24
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.22
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.21
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.16
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.15
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.12
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.12
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.1
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.1
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.08
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.06
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.04
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.03
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.02
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.95
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.88
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.85
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.85
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.82
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.81
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.81
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.79
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.77
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.73
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.72
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.71
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.71
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.69
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.66
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.65
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.65
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.64
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.64
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.63
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.61
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.6
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.57
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.56
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.54
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.54
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.44
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.42
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.41
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.4
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.4
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.4
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.37
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.34
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.33
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.32
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.31
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.31
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.31
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.3
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.27
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.26
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.25
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.22
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.17
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.17
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.16
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.11
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.1
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.08
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.05
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.99
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.96
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.83
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.69
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.65
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.62
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.6
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.58
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.52
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.5
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.49
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.34
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.27
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.19
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.15
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.15
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.11
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.9
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.88
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.87
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.8
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.73
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.61
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.49
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.39
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.36
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.07
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.99
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.94
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.24
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.18
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.13
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.69
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.36
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.98
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.79
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.39
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.1
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.71
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.58
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.31
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.78
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.57
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.48
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.35
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.16
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.7
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.64
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.19
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.18
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.06
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.79
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.4
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	84.11
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.66
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	83.44
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	82.65
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.52
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	81.2
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.77

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=9e-29  Score=210.68  Aligned_cols=140  Identities=16%  Similarity=0.215  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh-------------
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS-------------   58 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~-------------   58 (248)
                      +++|+||||||||||+++|+|+++|++|+|.++|.+...     ..++|       .|.+||+|++.             
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~  105 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR  105 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHHH
Confidence            678999999999999999999999999999999976532     23333       45689999875             


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       ++++++.+|+.+......  ..+++++  +++|||+++.  +|+++|+||||+ ||+.++..++ ++++++.+ .|.++
T Consensus       106 ~v~~~l~~~gl~~~~~~~~--~~LSGG~kQRvaiAral~~--~P~illlDEPts~LD~~~~~~i~-~~i~~l~~~~g~tv  180 (240)
T d2onka1         106 RVREMAEKLGIAHLLDRKP--ARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI  180 (240)
T ss_dssp             HHHHHHHTTTCTTTTTCCG--GGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred             HHHHHHHhcCcHhhhhCCh--hhCCHHHHHHHHHHHHHhc--cCCceEecCccccCCHHHHHHHH-HHHHHHHHhcCCeE
Confidence             788999999987655543  4566654  4999999999  999999999999 9999999999 99999875 48888


Q ss_pred             EEEEecccccccChHHHHH
Q 025795          134 CAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s  152 (248)
                      ++|    +|.+.+...+++
T Consensus       181 i~v----tHd~~~~~~~ad  195 (240)
T d2onka1         181 LHV----THDLIEAAMLAD  195 (240)
T ss_dssp             EEE----ESCHHHHHHHCS
T ss_pred             EEE----eCCHHHHHHhCC
Confidence            766    577766666655

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.96  E-value=5.8e-30  Score=216.90  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=124.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..            |+....+.+||+|++.            
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~  106 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK  106 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhccccHHH
Confidence            4789999999999999999999999999999999988743            3334456789999985            


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV  133 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i  133 (248)
                       +.++++.+++.+.....  ...+++++  +++|||+|+.  +|++||+||||+ ||+.++..++ ++++++.+ .|.++
T Consensus       107 ~~~~~l~~~~l~~~~~~~--~~~LSGG~~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~-~~l~~l~~~~g~ti  181 (229)
T d3d31a2         107 RVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV  181 (229)
T ss_dssp             HHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhcchhhHhCC--hhhCCHHHhcchhhhhhhhc--cCCceeecCCCcCCCHHHHHHHH-HHHHHHHhcCCcEE
Confidence             78899999998765544  34566654  4999999999  999999999999 9999999999 99999864 58888


Q ss_pred             EEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccch
Q 025795          134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (248)
Q Consensus       134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~~  181 (248)
                      ++|    +|.+.+...+++               .+-|+.+..++...
T Consensus       182 i~v----tHd~~~~~~~~d---------------rv~vm~~G~iv~~g  210 (229)
T d3d31a2         182 LHI----THDQTEARIMAD---------------RIAVVMDGKLIQVG  210 (229)
T ss_dssp             EEE----ESCHHHHHHHCS---------------EEEEESSSCEEEEE
T ss_pred             EEE----cCCHHHHHHhCC---------------EEEEEECCEEEEEc
Confidence            766    577766665544               34566666665443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=3.2e-29  Score=213.57  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+|+|+|+++|++|+|.++|.+...            |+....+.++|+|++.            
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  112 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  112 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHH
Confidence            4789999999999999999999999999999999987632            2233355789999885            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          ++++++.+++.+......  ..++++  ++++||++|+.  +|++||+||||+ ||+.++..++ ++++++.+ .|
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~--~~LSGGq~QRvaiAraL~~--~P~iLllDEPts~LD~~~~~~i~-~ll~~l~~~~g  187 (239)
T d1v43a3         113 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK  187 (239)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHhhhcc--CCCceeecCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence                678999999987654442  346665  45999999999  999999999999 9999999999 99999865 49


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .|+++|    +|.+.+...+++
T Consensus       188 ~tii~v----THd~~~a~~~~d  205 (239)
T d1v43a3         188 VTTIYV----THDQVEAMTMGD  205 (239)
T ss_dssp             CEEEEE----ESCHHHHHHHCS
T ss_pred             CeEEEE----eCCHHHHHHhCC
Confidence            998766    577776666655

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.2e-30  Score=217.25  Aligned_cols=141  Identities=15%  Similarity=0.128  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..            |+....+.+|++|++.            
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  106 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  106 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHH
Confidence            4789999999999999999999999999999999987642            2223345678888875            


Q ss_pred             ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795           59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN  130 (248)
Q Consensus        59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~  130 (248)
                          +.++++.+++.+......  ..+++++  +++||++|+.  +|+++|+||||+ ||+.++..++ ++++++.+ .|
T Consensus       107 ~~~~v~~~l~~~~l~~~~~~~~--~~LSGGqkQRvaiAraL~~--~P~illlDEPts~LD~~~~~~i~-~~l~~l~~~~g  181 (232)
T d2awna2         107 INQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG  181 (232)
T ss_dssp             HHHHHHHHHHHC-----------------------CHHHHHHT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCChhhhhCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHHhcC
Confidence                788999999987654442  4566654  4999999999  999999999999 9999999999 88888854 68


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .|+++|    +|.+.+...+++
T Consensus       182 ~tii~v----THd~~~a~~~~d  199 (232)
T d2awna2         182 RTMIYV----THDQVEAMTLAD  199 (232)
T ss_dssp             CEEEEE----ESCHHHHHHHCS
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            998766    577766666554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8.1e-30  Score=217.51  Aligned_cols=143  Identities=15%  Similarity=0.226  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|.++|.+...                 |+....+.++|+|++.       
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~  111 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999987532                 2333355778999875       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+||.+......  ..++++  ++++||++|+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~~~L~~vgL~~~~~~~~--~~LSGG~~QRvaiAraL~~--~P~lLllDEPt~~LD~~~~~~i~-~~l~~l  186 (240)
T d3dhwc1         112 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI  186 (240)
T ss_dssp             CCTTHHHHHHHHHHHHHSTTTTTSSCB--SCCCHHHHHHHHHHHHHHT--CCSEEEEESGGGSSCHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHhhhhcc--CCCeEEeccccccCCHHHhhHHH-HHHHHH
Confidence                     789999999987654432  356665  45999999999  999999999999 9999999999 999999


Q ss_pred             HhC-CCeEEEEEecccccccChHHHHHHH
Q 025795          127 KSR-NFNVCAVYLLDSQFITDVTKFISGC  154 (248)
Q Consensus       127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~  154 (248)
                      .++ |.++++|    +|.+.....+++.+
T Consensus       187 ~~~~g~tvi~v----THdl~~~~~~~dri  211 (240)
T d3dhwc1         187 NRRLGLTILLI----THEMDVVKRICDCV  211 (240)
T ss_dssp             HHHHCCEEEEE----BSCHHHHHHHCSEE
T ss_pred             HhccCCEEEEE----cCCHHHHHHhCCEE
Confidence            764 9999776    67777667666543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=1.1e-28  Score=210.39  Aligned_cols=141  Identities=17%  Similarity=0.161  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                  |+....+.+||+|++.      
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~  109 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR  109 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc
Confidence            4789999999999999999999999999999999976421                  2333356789999885      


Q ss_pred             ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795           59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH  125 (248)
Q Consensus        59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~  125 (248)
                                ++++++.+++.+......  ..+++++  +++||++|+.  +|+++|+||||+ ||+.++..++ +++++
T Consensus       110 ~~~~~e~~~~v~~~l~~~~l~~~~~~~p--~~LSGGqkQRv~IAraL~~--~P~iLllDEPt~~LD~~~~~~i~-~~l~~  184 (240)
T d1g2912         110 KVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK  184 (240)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCGGGTTCCG--GGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEecCCCcccCHHHHHHHH-HHHHH
Confidence                      788999999987554432  4566654  4999999999  999999999999 9999999999 99999


Q ss_pred             HHhC-CCeEEEEEecccccccChHHHHH
Q 025795          126 LKSR-NFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++ |.++++|    +|.+.+...+++
T Consensus       185 l~~~~g~tvi~v----THd~~~~~~~~d  208 (240)
T d1g2912         185 LQRQLGVTTIYV----THDQVEAMTMGD  208 (240)
T ss_dssp             HHHHHTCEEEEE----ESCHHHHHHHCS
T ss_pred             HHhccCCEEEEE----cCCHHHHHHhCC
Confidence            8754 9999776    577766666554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=1.7e-28  Score=209.26  Aligned_cols=141  Identities=18%  Similarity=0.147  Sum_probs=114.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCC-------CCCcccChhhhhh-------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENF-------DYPVAMDIRELIS-------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~-------~y~~~~~i~e~i~-------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...          +++       ...|.+||+|++.       
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~  111 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc
Confidence            4789999999999999999999999999999999976521          123       2355789999885       


Q ss_pred             ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                               +.++++.+|+.+......  ..+++++  +++|||+|+.  +|++||+||||+ ||+.++..++ ++++++
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p--~~LSGGqkQRvaiARaL~~--~P~llllDEPt~~LD~~~~~~i~-~~i~~l  186 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV  186 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCCh--hhCCHHHHhHHHHHhHHhh--cccceeecCCccCCCHHHHHHHH-HHHHHH
Confidence                     789999999987654442  4566654  5999999999  999999999999 9999999999 999998


Q ss_pred             Hh-CCCeEEEEEecccccccChHHHHH
Q 025795          127 KS-RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .+ .|.++++|    +|.+.+...+++
T Consensus       187 ~~~~g~tvi~v----THd~~~~~~~~d  209 (242)
T d1oxxk2         187 QSRLGVTLLVV----SHDPADIFAIAD  209 (242)
T ss_dssp             HHHHCCEEEEE----ESCHHHHHHHCS
T ss_pred             HhccCCEEEEE----ECCHHHHHHhCC
Confidence            65 48998776    566665555544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=8.3e-28  Score=203.85  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------   58 (248)
                      -+++|+||||||||||+++|+|+.+|++|+|+++|.+...                  |+....+.+||+|++.      
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~  111 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHh
Confidence            4789999999999999999999999999999999987632                  2223345778988864      


Q ss_pred             -------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795           59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF  122 (248)
Q Consensus        59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l  122 (248)
                                   +.++++.+++.+.....+. ..++++  ++++||++|+.  +|++||+||||+ ||+.++..++ ++
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-~~LSGGqkQRvaIAraL~~--~P~lLllDEPTs~LD~~~~~~i~-~~  187 (230)
T d1l2ta_         112 YRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALAN--NPPIILADQPTGALDSKTGEKIM-QL  187 (230)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred             ccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-hhCCHHHHHHHHHHhhhhc--CCCEEEecCCccccCHHHHHHHH-HH
Confidence                         5677888888654222222 346665  45999999999  999999999999 9999999999 99


Q ss_pred             HHHHHh-CCCeEEEE
Q 025795          123 VDHLKS-RNFNVCAV  136 (248)
Q Consensus       123 l~~l~~-~~~~ii~v  136 (248)
                      ++++.+ .|.|+++|
T Consensus       188 l~~l~~~~g~tii~v  202 (230)
T d1l2ta_         188 LKKLNEEDGKTVVVV  202 (230)
T ss_dssp             HHHHHHTTCCEEEEE
T ss_pred             HHHHHHhhCCEEEEE
Confidence            999975 48888776

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.95  E-value=2.9e-29  Score=214.54  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.++..               +.....+.+++++++.         
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~  112 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK  112 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCH
Confidence            4789999999999999999999999999999999988643               2233355788888874         


Q ss_pred             ------HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795           59 ------LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        59 ------~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~  128 (248)
                            ++++++.+ ++.+.....  ...+++++  +++||++++.  +|++||+||||+ ||+.+++.++ ++++++++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~LSGG~~Qrv~iAraL~~--~P~lLllDEPt~gLD~~~~~~i~-~~i~~l~~  187 (240)
T d1ji0a_         113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChHHHHhCc--hhhCCHHHHHHHHHHHHHHh--CCCEeeecCCCcCCCHHHHHHHH-HHHHHHHh
Confidence                  34455544 454443322  23466654  4899999999  999999999999 9999999999 99999988


Q ss_pred             CCCeEEEEEecccccccChHHHHH
Q 025795          129 RNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       129 ~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +|.+++++    +|.+.+...+++
T Consensus       188 ~g~til~~----tH~l~~~~~~~d  207 (240)
T d1ji0a_         188 EGTTILLV----EQNALGALKVAH  207 (240)
T ss_dssp             TTCCEEEE----ESCHHHHHHHCS
T ss_pred             CCCEEEEE----eCCHHHHHHhCC
Confidence            89998766    577766665554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=6e-28  Score=206.03  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=114.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~-----------   58 (248)
                      -++||+||||||||||+++|+|+++|++|+|.+.|.++..             +...+.+.++++|++.           
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~  108 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS  108 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHH
Confidence            4789999999999999999999999999999999988643             2233456788888874           


Q ss_pred             -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795           59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN  130 (248)
Q Consensus        59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~  130 (248)
                           ++.+++.+++.+.....  ...+++++  +++||++++.  +|+++|+||||+ ||+.+++.++ +++++++++|
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~--~~~lSgG~~qrv~iA~al~~--~p~illLDEPt~gLD~~~~~~i~-~~i~~~~~~g  183 (238)
T d1vpla_         109 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG  183 (238)
T ss_dssp             HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHhhh--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHhcC
Confidence                 56777888887664443  34566654  4899999999  999999999999 9999999998 9999998889


Q ss_pred             CeEEEEEecccccccChHHHHH
Q 025795          131 FNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       131 ~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      .+++++    +|.+.+...+|+
T Consensus       184 ~tii~~----tH~l~~~~~~~d  201 (238)
T d1vpla_         184 LTILVS----SHNMLEVEFLCD  201 (238)
T ss_dssp             CEEEEE----ECCHHHHTTTCS
T ss_pred             CEEEEE----eCCHHHHHHhCC
Confidence            998765    577766665555

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.2e-27  Score=204.41  Aligned_cols=141  Identities=20%  Similarity=0.171  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------CCC-------CCcccChhhhhh---------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFD-------YPVAMDIRELIS---------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~--------~~~-------y~~~~~i~e~i~---------   58 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+....        .+.       ..+.++++|++.         
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~  110 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES  110 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhcccc
Confidence            47899999999999999999999999999999999876421        122       234678888763         


Q ss_pred             --------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           59 --------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        59 --------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                                          +.++++.+++.+.....  ...+++++  ++.||++++.  +|+++|+||||+ ||+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~Qrv~iAraL~~--~P~llilDEPt~gLD~~~~  186 (254)
T d1g6ha_         111 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA  186 (254)
T ss_dssp             HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred             chhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc--hhhCCcHHHHHHHHHHHHHh--CcCchhhcCCcccCCHHHH
Confidence                                45677788887654433  24566653  4899999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS  152 (248)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s  152 (248)
                      +.++ +++++++++|.+++++    +|.+.+...+|+
T Consensus       187 ~~i~-~~i~~l~~~g~til~v----sHdl~~~~~~~D  218 (254)
T d1g6ha_         187 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID  218 (254)
T ss_dssp             HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS
T ss_pred             HHHH-HHHHHHHHCCCEEEEE----eCcHHHHHHhCC
Confidence            9999 9999998889998766    577776666655

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=2.3e-28  Score=210.94  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCCCcccChhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIRE   55 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~y~~~~~i~e   55 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...                           |+....+.+++++
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~e  108 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE  108 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcch
Confidence            4789999999999999999999999999999999987531                           2333455678888


Q ss_pred             hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795           56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH  115 (248)
Q Consensus        56 ~i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~  115 (248)
                      ++.                 +.++++.+++.+.....+. ..+++++  +++||++|+.  +|+++|+||||+ ||+.++
T Consensus       109 nv~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-~~LSGG~~QRv~iAraL~~--~P~llilDEPT~gLD~~~~  185 (258)
T d1b0ua_         109 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-VHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPELV  185 (258)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-GGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHHH
T ss_pred             hhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-ccccHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHHH
Confidence            764                 6788899999764322222 3466654  4999999999  999999999999 999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccc
Q 025795          116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN  180 (248)
Q Consensus       116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~  180 (248)
                      ..++ +++++++++|.++++|    +|.+.....+++               .+-|+.+..++..
T Consensus       186 ~~i~-~ll~~l~~~g~til~v----tHdl~~~~~~ad---------------ri~vm~~G~iv~~  230 (258)
T d1b0ua_         186 GEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS---------------HVIFLHQGKIEEE  230 (258)
T ss_dssp             HHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS---------------EEEEEETTEEEEE
T ss_pred             HHHH-HhhhhhcccCCceEEE----eCCHHHHHHhCC---------------EEEEEECCEEEEE
Confidence            9999 9999998889888766    577765555544               4456666666543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=8.5e-26  Score=187.89  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCcccChhhhhh--------------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y~~~~~i~e~i~--------------~   59 (248)
                      -+++|+||||||||||+++|+|+++|++|+|.++|.+...         +...+++.+++++++.              +
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~  107 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  107 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHH
Confidence            3689999999999999999999999999999999987642         2333345677877764              4


Q ss_pred             HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+.++.+++.+....   ...+++++  ++.||++++.  +|+++||||||+ ||+.+++.++ +.+.++.+++..++++
T Consensus       108 ~~~l~~~~~~~~~~~---~~~LSgG~~qrv~ia~al~~--~~~llllDEPt~gLD~~~~~~i~-~~l~~~~~~~~~~ii~  181 (200)
T d1sgwa_         108 MDALESVEVLDLKKK---LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS  181 (200)
T ss_dssp             HHHHHHTTCCCTTSB---GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred             HHHHHHcCCcccccc---cCcCCCcHHHHHHHHHHHhc--CCCEEEEcCcccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence            556667776443222   34566654  4899999999  999999999999 9999999999 7677765543344444


Q ss_pred             E
Q 025795          137 Y  137 (248)
Q Consensus       137 ~  137 (248)
                      |
T Consensus       182 ~  182 (200)
T d1sgwa_         182 S  182 (200)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.1e-25  Score=189.39  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~----------   58 (248)
                      -+++|+||||||||||+++|+|+. |.+|+|.+.|.+...              +....+...++++++.          
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  104 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE  104 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHH
Confidence            478999999999999999999975 689999999987532              1111122345555543          


Q ss_pred             -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccC-----CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795           59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY-----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR  129 (248)
Q Consensus        59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~-----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~  129 (248)
                       ++++++.+++.+.....  ...+++++  +++||+++++.     .+|+++|+||||+ ||+.++..+. +++++++++
T Consensus       105 ~~~~~~~~~~l~~~~~~~--~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~  181 (231)
T d1l7vc_         105 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQ  181 (231)
T ss_dssp             HHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHT
T ss_pred             HHHHHHHhcCCHhHhCcC--hhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhC
Confidence             67888889998765444  23466654  48899999741     1569999999999 9999999988 999999888


Q ss_pred             CCeEEEEEecccccccChHHHHHHHH
Q 025795          130 NFNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus       130 ~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      |.+++++    +|.+.+...+++.++
T Consensus       182 g~tii~v----tHdl~~~~~~~dri~  203 (231)
T d1l7vc_         182 GLAIVMS----SHDLNHTLRHAHRAW  203 (231)
T ss_dssp             TCEEEEC----CCCHHHHHHHCSBCC
T ss_pred             CCEEEEE----eCCHHHHHHHCCEEE
Confidence            9888655    688877777766443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.8e-26  Score=192.46  Aligned_cols=130  Identities=18%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.      +..+.||++++.          +
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~  109 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV  109 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCccccHHHH
Confidence            4689999999999999999999999999999999988643       1122      223458888875          3


Q ss_pred             HHHHHHhCC------CCCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGL------GPNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L------~~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++      -|.+...   .....+++++  +++|||+++.  +|+++||||||+ ||+.+.+.++ +.++++.
T Consensus       110 ~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~~l~  186 (241)
T d2pmka1         110 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC  186 (241)
T ss_dssp             HHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc--ccchhhhhCCccccCHHHHHHHH-HHHHHHh
Confidence            333443332      1221100   0012355554  4999999999  999999999999 9999999999 8888885


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.|+++|
T Consensus       187 ~-~~Tvi~i  194 (241)
T d2pmka1         187 K-GRTVIII  194 (241)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCEEEEE
Confidence            4 7788766

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.91  E-value=1.3e-25  Score=191.79  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-----------   58 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.| ++     .-|+++++.           
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~  108 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED  108 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccccccchhh
Confidence            4789999999999999999999999999999999987642       23444 22     347888764           


Q ss_pred             HHHHHHHhCCCCCCchh-hhH--------HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLGPNGGLI-YCM--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~~~~~~~-~~~--------~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.+..+..++....... ...        ..+++++  +++|||+++.  +|+++|+||||+ ||+.+.+.++ +.++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~~l  185 (242)
T d1mv5a_         109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL  185 (242)
T ss_dssp             HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred             HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHHHH
Confidence            34455554443211000 000        1255554  4999999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccch
Q 025795          127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK  181 (248)
Q Consensus       127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~~  181 (248)
                      . ++.|+++|    +|.+... ..               .-++-|+.+.-++...
T Consensus       186 ~-~~~Tvi~i----tH~l~~~-~~---------------~D~i~vl~~G~iv~~G  219 (242)
T d1mv5a_         186 M-KGRTTLVI----AHRLSTI-VD---------------ADKIYFIEKGQITGSG  219 (242)
T ss_dssp             H-TTSEEEEE----CCSHHHH-HH---------------CSEEEEEETTEECCCS
T ss_pred             c-CCCEEEEE----ECCHHHH-Hh---------------CCEEEEEECCEEEEEC
Confidence            6 47888766    4554311 11               2356677777666544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.9e-26  Score=193.59  Aligned_cols=129  Identities=16%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.+...       +.+.|      ..+.|+++++.           
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~  120 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE  120 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccchHHH
Confidence            4689999999999999999999999999999999987632       11222      12447888775           


Q ss_pred             HH---------HHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795           59 LE---------DVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD  124 (248)
Q Consensus        59 ~~---------~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~  124 (248)
                      ..         +.++.+  ++...-+..  ...+++++  +++|||+++.  +|+++|+||||+ ||+.+...++ ++++
T Consensus       121 ~~~~~~~~~~~~~i~~l~~g~~~~i~~~--~~~LSGGqkQRvaiARal~~--~p~ililDEpTs~LD~~~~~~i~-~~l~  195 (251)
T d1jj7a_         121 ITAAAVKSGAHSFISGLPQGYDTEVDEA--GSQLSGGQRQAVALARALIR--KPCVLILDDATSALDANSQLQVE-QLLY  195 (251)
T ss_dssp             HHHHHHHHTCHHHHHTSTTGGGCBCCSS--CSSSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHhccccchhhHhcc--CccCChhHceEEEEeecccc--CCcEEEecCcCcccChhhHHHHH-HHHH
Confidence            11         222222  111110000  12355554  4999999999  999999999999 9999999998 8888


Q ss_pred             HHHh-CCCeEEEE
Q 025795          125 HLKS-RNFNVCAV  136 (248)
Q Consensus       125 ~l~~-~~~~ii~v  136 (248)
                      ++.+ .+.|+++|
T Consensus       196 ~l~~~~~~Tvi~i  208 (251)
T d1jj7a_         196 ESPERYSRSVLLI  208 (251)
T ss_dssp             TCGGGGGCEEEEE
T ss_pred             HHhhhcCCEEEEE
Confidence            8764 47888776

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=1.1e-22  Score=170.44  Aligned_cols=232  Identities=22%  Similarity=0.370  Sum_probs=175.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .+++|+||.|||||||++.|..+.. ..+++.++|.||+....+|.+..++++.+...+.++.. .+++++...|.....
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG-YGPNGAIVESYDRLM   78 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT-CCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhh-hccCCchhhhhHhHH
Confidence            4789999999999999999998765 56789999999999999998888999998888888654 677777777766666


Q ss_pred             hhHHHHHHH---HHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHH
Q 025795           83 DNLDDWLAE---ELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS  159 (248)
Q Consensus        83 ~~~~~~La~---~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~  159 (248)
                      +.. .++.+   ....  +++++++|.|++.++.........+.+.    ...-++++++|+....+|..+.+..+....
T Consensus        79 ~~~-~~~~~~~~~~~~--~~~~~~id~~g~~~~~~~~~~~~~~~~~----~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~  151 (244)
T d1yrba1          79 EKF-NEYLNKILRLEK--ENDYVLIDTPGQMETFLFHEFGVRLMEN----LPYPLVVYISDPEILKKPNDYCFVRFFALL  151 (244)
T ss_dssp             TTH-HHHHHHHHHHHH--HCSEEEEECCSSHHHHHHSHHHHHHHHT----SSSCEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHhhcc--ccceeeeccccchhHHHHHHHHHHHHhh----ccCceEEEEeccccccCchhHhhHHHHHHH
Confidence            665 33322   2334  6899999999998877765555233322    222345678999999999999999999999


Q ss_pred             HHHhhCCCeeeeecccccccchhhhhhhcc--cCHHHHHHHhhcccchhHHHHHHHHHHHhhhc-CCeeeEEeeccccH-
Q 025795          160 AMVQLELPHVNILSKMDLVTNKKEIEDYLN--PESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKES-  235 (248)
Q Consensus       160 ~~~~~~~p~~~vlsk~dll~~~~~l~~~~~--~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~f~~l~~~~~~-  235 (248)
                      .+.+++.|.+.|+||+|++... ..+....  .....+...+.. ....+..+.+.+...++++ +.+.++|+|+.+++ 
T Consensus       152 ~~~~~~~~~ivvinK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geG  229 (244)
T d1yrba1         152 IDLRLGATTIPALNKVDLLSEE-EKERHRKYFEDIDYLTARLKL-DPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG  229 (244)
T ss_dssp             HHHHHTSCEEEEECCGGGCCHH-HHHHHHHHHHCHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred             HHHHhCCCceeeeeccccccHH-HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCC
Confidence            9999999999999999999865 2322221  133344444433 2346778889999988875 56999999999988 


Q ss_pred             -HHHHHHHhhc
Q 025795          236 -RRLLSQIMKM  245 (248)
Q Consensus       236 -~~~~~~id~~  245 (248)
                       ..|+..|+.+
T Consensus       230 i~~L~~~l~e~  240 (244)
T d1yrba1         230 FEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             8888888763

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=1.8e-23  Score=179.51  Aligned_cols=130  Identities=18%  Similarity=0.122  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS-----------   58 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~-----------   58 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.++..       ..+.|      ...-++++++.           
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~  121 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ  121 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHH
Confidence            4689999999999999999999999999999999988643       11222      12335666543           


Q ss_pred             HHHHHHHhCCC------CCCch---hhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795           59 LEDVMEELGLG------PNGGL---IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL  126 (248)
Q Consensus        59 ~~~~m~~~~L~------~~~~~---~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l  126 (248)
                      +.++++..++.      |.|-.   -.....++++  ++++|||+++.  +|+++||||||+ ||+.+...++ +.++++
T Consensus       122 i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~--~p~ililDEpts~LD~~~~~~i~-~~l~~l  198 (253)
T d3b60a1         122 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL  198 (253)
T ss_dssp             HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEeccccccCCHHHHHHHH-HHHHHh
Confidence            33333333221      11100   0001235554  45999999999  999999999999 9999999999 888888


Q ss_pred             HhCCCeEEEE
Q 025795          127 KSRNFNVCAV  136 (248)
Q Consensus       127 ~~~~~~ii~v  136 (248)
                      .+ +.|+++|
T Consensus       199 ~~-~~Tvi~i  207 (253)
T d3b60a1         199 QK-NRTSLVI  207 (253)
T ss_dssp             HT-TSEEEEE
T ss_pred             cc-CCEEEEE
Confidence            64 7787766

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=2.4e-23  Score=178.85  Aligned_cols=130  Identities=16%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L   59 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~   59 (248)
                      -.++|+||||||||||+++|+|+++|++|+|.++|.|...       +.+.      +....||+|++.          +
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~  124 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV  124 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHH
Confidence            4689999999999999999999999999999999987643       1222      223558999885          4


Q ss_pred             HHHHHHhCCC------CCCchh---hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795           60 EDVMEELGLG------PNGGLI---YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK  127 (248)
Q Consensus        60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~  127 (248)
                      .++++..++.      |.+-..   ..-..++++  ++++|||+++.  +|+++||||||+ ||+.+...++ +.++++.
T Consensus       125 ~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~--~p~ililDEpts~LD~~t~~~i~-~~l~~l~  201 (255)
T d2hyda1         125 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS  201 (255)
T ss_dssp             HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHHh
Confidence            4555555542      111100   001235554  45999999999  999999999999 9999999988 8888875


Q ss_pred             hCCCeEEEE
Q 025795          128 SRNFNVCAV  136 (248)
Q Consensus       128 ~~~~~ii~v  136 (248)
                      + +.|+++|
T Consensus       202 ~-~~TvI~i  209 (255)
T d2hyda1         202 K-DRTTLIV  209 (255)
T ss_dssp             T-TSEEEEE
T ss_pred             c-CCEEEEE
Confidence            4 6777766

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.7e-23  Score=178.46  Aligned_cols=131  Identities=20%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCCC----
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG----   69 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~----   69 (248)
                      -+++|+||||||||||+++|+|+++|++|.|.++|.-.-....++...-++++++.         ..++.+..++.    
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~  142 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDIT  142 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHH
Confidence            46899999999999999999999999999999988421111122322347777764         34444443321    


Q ss_pred             --CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           70 --PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        70 --~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                        +.+...   .....+++++  +++|||+|+.  +|+++||||||+ ||+.+...+++.++..+ ..+.++++|
T Consensus       143 ~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~--~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~i  214 (281)
T d1r0wa_         143 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILV  214 (281)
T ss_dssp             TSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEE
T ss_pred             hchhhhhhhhhhhccCCCHHHHHHHHHHHHHHh--CccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEE
Confidence              111000   0011355554  4999999999  999999999999 99999988883334433 356777665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.44  E-value=1.6e-14  Score=114.69  Aligned_cols=120  Identities=17%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCC--CCC-------Cc----ccChhhhhhHHHHHHHhCCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN--FDY-------PV----AMDIRELISLEDVMEELGLGPN   71 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~--~~y-------~~----~~~i~e~i~~~~~m~~~~L~~~   71 (248)
                      ++|+||||||||||++.++|.+++..|.+.+.+.+.....  ..+       ..    .........    ...++.  .
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~   76 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKL----VGSYGV--N   76 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSE----ETTEEE--C
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhh----hhhhhc--C
Confidence            6899999999999999999999999999998876542210  000       00    000000000    000000  0


Q ss_pred             CchhhhHHhhhh-hHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           72 GGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        72 ~~~~~~~~~l~~-~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                         ....+.... ....++++++..  +|+++++|||+..+.... .....+.+.+...+.+++++
T Consensus        77 ---~~~~~~~~~~~~~~~l~~~~~~--~~~vlllDE~~~~~~~~~-~~~~~l~~~l~~~~~~il~~  136 (178)
T d1ye8a1          77 ---VQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVAT  136 (178)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCH-HHHHHHHHHHTCTTSEEEEE
T ss_pred             ---cchhhhhhhhhHHHHHHHHHhc--CCCceeecCCCccchhhH-HHHHHHHHHhccCCCEEEEE
Confidence               001111111 123677888888  999999999987444443 33424444454456777655

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.5e-07  Score=75.76  Aligned_cols=157  Identities=15%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +++++++||+|+||||.+.-|+-++...+.+|.+...|.      |    .+.-.-.++.+.+.+++.-.....  -+.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt------~----R~gA~eQL~~~a~~l~v~~~~~~~--~~d~   76 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT------F----RAAAVEQLQVWGQRNNIPVIAQHT--GADS   76 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT------T----CHHHHHHHHHHHHHTTCCEECCST--TCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc------c----cccchhhhhhhhhhcCCccccccc--CCCH
Confidence            578999999999999999989888776667888887654      2    122222244555666654211000  0001


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCC-c-cCHHhHHHHHHHHHHHHHhCC----CeEEEEEecccccccChHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRN----FNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~----~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      ..-+...+..+-..  +-+++|+|.|| + .|.....++. ++.+.....+    ..+++|  +|+..=.+...      
T Consensus        77 ~~~l~~~~~~a~~~--~~d~ilIDTaGr~~~d~~~~~el~-~l~~~~~~~~~~~p~~~~LV--l~a~~~~~~~~------  145 (211)
T d2qy9a2          77 ASVIFDAIQAAKAR--NIDVLIADTAGRLQNKSHLMEELK-KIVRVMKKLDVEAPHEVMLT--IDASTGQNAVS------  145 (211)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEECCCCCGGGHHHHHHHHH-HHHHHHTTTCTTCCSEEEEE--EEGGGTHHHHH------
T ss_pred             HHHHHHHHHHHHHc--CCCEEEeccCCCccccHHHHHHHH-HHHHHHhhhcccCcceeeee--hhcccCcchHH------
Confidence            11111122222234  77999999999 3 7777666655 6655553221    223333  34332211111      


Q ss_pred             HHHHHHHhhCCCeeeeecccccccchh
Q 025795          156 ASLSAMVQLELPHVNILSKMDLVTNKK  182 (248)
Q Consensus       156 ~~~~~~~~~~~p~~~vlsk~dll~~~~  182 (248)
                      ......-..+.-. -++||.|--.+.+
T Consensus       146 ~~~~~~~~~~~~~-lIlTKlDe~~~~G  171 (211)
T d2qy9a2         146 QAKLFHEAVGLTG-ITLTKLDGTAKGG  171 (211)
T ss_dssp             HHHHHHHHSCCCE-EEEECCTTCTTTT
T ss_pred             HHhhhhhccCCce-EEEeecCCCCCcc
Confidence            1111111234444 4899999866654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=2.8e-07  Score=75.52  Aligned_cols=157  Identities=16%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +++++++||+|+||||.+.-|+-++...+.+|.+...|.      |    .+.-.-.++.+.+.+++.-.....  -+..
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt------~----R~gA~eQL~~~a~~l~i~~~~~~~--~~d~   78 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT------F----RAAAIEQLKIWGERVGATVISHSE--GADP   78 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT------T----CHHHHHHHHHHHHHHTCEEECCST--TCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc------c----ccchhHHHHHHhhhcCccccccCC--CCcH
Confidence            689999999999999999888887766667888887764      2    122111244445555553211000  0011


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhC----CCeEEEEEecccccccChHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSR----NFNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~----~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      ..-...+.+.+...  +-+++|+|.||-  -|.....++. ++.+.....    ...+++|  +++..-.  ...    -
T Consensus        79 ~~~~~~~~~~~~~~--~~d~ilIDTaGr~~~d~~~~~el~-~~~~~~~~~~~~~p~~~~LV--l~a~~~~--~~~----~  147 (213)
T d1vmaa2          79 AAVAFDAVAHALAR--NKDVVIIDTAGRLHTKKNLMEELR-KVHRVVKKKIPDAPHETLLV--IDATTGQ--NGL----V  147 (213)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEEEECCCCSCHHHHHHHHH-HHHHHGGGTCTTCCSEEEEE--EEGGGHH--HHH----H
T ss_pred             HHHHHHHHHHHHHc--CCCEEEEeccccccchHHHHHHHH-HHHhhhhhccccccceeEEe--eccccCc--chh----h
Confidence            11111333444455  789999999993  7766655544 554443321    1223333  3443221  111    0


Q ss_pred             HHHHHHHhhCCCeeeeecccccccchh
Q 025795          156 ASLSAMVQLELPHVNILSKMDLVTNKK  182 (248)
Q Consensus       156 ~~~~~~~~~~~p~~~vlsk~dll~~~~  182 (248)
                      ......-.++... -++||.|--.+.+
T Consensus       148 ~~~~~~~~~~~~~-lI~TKlDe~~~~G  173 (213)
T d1vmaa2         148 QAKIFKEAVNVTG-IILTKLDGTAKGG  173 (213)
T ss_dssp             HHHHHHHHSCCCE-EEEECGGGCSCTT
T ss_pred             hhhhhccccCCce-EEEecccCCCccc
Confidence            1111112334445 4899999866554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=3.4e-06  Score=66.78  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|++|||||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5899999999999999999974

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=5.8e-07  Score=70.42  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|++|+|||||++.|.|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.52  E-value=7.3e-07  Score=72.89  Aligned_cols=97  Identities=18%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.+++++||+|+||||.+.-|+-+++..+.+|.+...|.      |    .+...-.++.+-+.+|+.-.....  .+.+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt------~----R~ga~eQL~~~a~~l~v~~~~~~~--~~~~   79 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV------Y----RPAALEQLQQLGQQIGVPVYGEPG--EKDV   79 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC------S----SHHHHHHHHHHHHHHTCCEECCTT--CCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec------c----ccchhHHHHHhccccCcceeeccc--chhh
Confidence            578999999999999999888888876667888887764      2    122222234445555554211000  0111


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IEL  112 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~  112 (248)
                      ..-...++..+...  +.+++++|.||-  .|.
T Consensus        80 ~~~~~~a~~~~~~~--~~d~IlIDTaGr~~~~~  110 (211)
T d1j8yf2          80 VGIAKRGVEKFLSE--KMEIIIVDTAGRHGYGE  110 (211)
T ss_dssp             HHHHHHHHHHHHHT--TCSEEEEECCCSCCTTC
T ss_pred             hHHHHHHHHHhhcc--CCceEEEecCCcCccch
Confidence            11122344444455  789999999993  553

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=2.5e-07  Score=72.66  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++|+|++|+|||||++.|+|-
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.41  E-value=3.2e-06  Score=68.80  Aligned_cols=157  Identities=18%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL   81 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l   81 (248)
                      +.+++++||+||||||.+.-|+-++...+.+|.+...|.-+      .  --.|+  ++.+-+.+++.-.....  ....
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R------~--gA~eQ--L~~~a~~l~i~~~~~~~--~~d~   73 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR------A--AGGTQ--LSEWGKRLSIPVIQGPE--GTDP   73 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS------T--THHHH--HHHHHHHHTCCEECCCT--TCCH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc------c--cchhh--HhhcccccCceEEeccC--CccH
Confidence            35789999999999999999988887777788888776421      1  01122  33444555553110000  0001


Q ss_pred             hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHh----CCCeEEEEEecccccccChHHHHHHHH
Q 025795           82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKS----RNFNVCAVYLLDSQFITDVTKFISGCM  155 (248)
Q Consensus        82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~----~~~~ii~v~l~d~~~~~d~~~~~s~~l  155 (248)
                      ..-....+..+-..  +.+++|+|.||-  -|.....++. ++.+....    ....+++|  +|+..-.+-..      
T Consensus        74 ~~~~~~~~~~~~~~--~~d~ilIDTaGr~~~d~~l~~el~-~~~~~~~~~~~~~p~~~~LV--l~a~~~~~~~~------  142 (207)
T d1okkd2          74 AALAYDAVQAMKAR--GYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLV--LDAVTGQNGLE------  142 (207)
T ss_dssp             HHHHHHHHHHHHHH--TCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEE--EETTBCTHHHH------
T ss_pred             HHHHHHHHHHHHHC--CCCEEEcCccccchhhHHHHHHHH-HHHHHhhhcccCCCceEEEE--eecccCchHHH------
Confidence            11111222223334  779999999994  7766555544 54444321    22334333  34433221111      


Q ss_pred             HHHHHHHhhCCCeeeeecccccccchh
Q 025795          156 ASLSAMVQLELPHVNILSKMDLVTNKK  182 (248)
Q Consensus       156 ~~~~~~~~~~~p~~~vlsk~dll~~~~  182 (248)
                      ......-.++...+ ++||.|--.+.+
T Consensus       143 ~~~~~~~~~~~~~l-I~TKlDet~~~G  168 (207)
T d1okkd2         143 QAKKFHEAVGLTGV-IVTKLDGTAKGG  168 (207)
T ss_dssp             HHHHHHHHHCCSEE-EEECTTSSCCCT
T ss_pred             HHHHhhhccCCceE-EEeccCCCCCcc
Confidence            11111223455564 899999876654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=4.4e-06  Score=65.31  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|+.|+|||||++.|.|-
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            56899999999999999999873

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=1.8e-06  Score=67.39  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++|+|++|+|||||++.|.|-
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999873

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.34  E-value=1.5e-06  Score=70.80  Aligned_cols=153  Identities=18%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .++.++||+|+||||.+.-|+-++...+.+|.+...|..+          +.-.-..+.+-+.+++.-.....  .+...
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R----------~gA~eQL~~~a~~l~v~~~~~~~--~~~~~   78 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR----------PAAREQLRLLGEKVGVPVLEVMD--GESPE   78 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC----------HHHHHHHHHHHHHHTCCEEECCT--TCCHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc----------chHHHHHHHHHHhcCCccccccc--cchhh
Confidence            5678999999999999999988877666778777665421          11111233444455553111000  00010


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCC-c-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA  160 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~  160 (248)
                      .-.......+-..  +.+++|+|.|+ + .|.....++. ++.+.. +. ..+++|  +++..-.+..+.       ...
T Consensus        79 ~~~~~~~~~~~~~--~~d~vlIDTaGr~~~d~~~~~el~-~~~~~~-~~-~~~llv--~~a~~~~~~~~~-------~~~  144 (207)
T d1ls1a2          79 SIRRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL-GP-DEVLLV--LDAMTGQEALSV-------ARA  144 (207)
T ss_dssp             HHHHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH-CC-SEEEEE--EEGGGTHHHHHH-------HHH
T ss_pred             HHHHHHHHHHhhc--cCcceeecccccchhhhhhHHHHH-HHHhhc-CC-ceEEEE--eccccchhHHHH-------HHH
Confidence            1010111222234  78999999999 4 8877666655 554443 22 233333  333222111111       111


Q ss_pred             HH-hhCCCeeeeecccccccchh
Q 025795          161 MV-QLELPHVNILSKMDLVTNKK  182 (248)
Q Consensus       161 ~~-~~~~p~~~vlsk~dll~~~~  182 (248)
                      .. .++...+ ++||.|--.+.+
T Consensus       145 f~~~~~~~~~-I~TKlDe~~~~G  166 (207)
T d1ls1a2         145 FDEKVGVTGL-VLTKLDGDARGG  166 (207)
T ss_dssp             HHHHTCCCEE-EEECGGGCSSCH
T ss_pred             HHhhCCCCee-EEeecCccccch
Confidence            11 2454554 899999766544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=3.2e-06  Score=65.52  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2e-07  Score=71.73  Aligned_cols=42  Identities=14%  Similarity=0.003  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |.=+++|+|++|||||||++.|...+...+.++.+...|+..
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            545789999999999999999999888777778887766543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=2.2e-06  Score=70.24  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL  177 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl  177 (248)
                      +..+.++|.||.-|....      ..+.+....  + ++.++|+..--++..     .-........+.|++-|+||+|+
T Consensus        69 ~~~~~~iDtPGh~~f~~~------~~~~~~~~D--~-~ilVvda~~g~~~~~-----~~~~~~~~~~~~p~iivlNK~D~  134 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTL------RKRGGALAD--L-AILIVDINEGFKPQT-----QEALNILRMYRTPFVVAANKIDR  134 (227)
T ss_dssp             CCEEEEECCCTTSCCTTS------BCSSSBSCS--E-EEEEEETTTCCCHHH-----HHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccccccccccceeccccc------chhcccccc--e-EEEEEecccCcccch-----hHHHHHhhcCCCeEEEEEECccC
Confidence            678999999996443221      111222222  2 334567654323321     22334455688999999999999


Q ss_pred             ccch
Q 025795          178 VTNK  181 (248)
Q Consensus       178 l~~~  181 (248)
                      +...
T Consensus       135 ~~~~  138 (227)
T d1g7sa4         135 IHGW  138 (227)
T ss_dssp             STTC
T ss_pred             CCch
Confidence            8654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=5.5e-06  Score=63.14  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|++|+|||||++.|.|-
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999974

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.20  E-value=2.5e-05  Score=61.90  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++|+|.-.+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            47999999999999999999854

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.17  E-value=6.2e-06  Score=64.71  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++|+|+..+|||||++.|.|.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=3.9e-07  Score=71.75  Aligned_cols=20  Identities=30%  Similarity=0.258  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++|+|++++|||||++.|+|
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=8.5e-06  Score=64.54  Aligned_cols=78  Identities=15%  Similarity=0.301  Sum_probs=41.6

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc----ccChHHHHHHHHHHHHHHHhhCCCeeeeec
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF----ITDVTKFISGCMASLSAMVQLELPHVNILS  173 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~----~~d~~~~~s~~l~~~~~~~~~~~p~~~vls  173 (248)
                      +..+.+.|.|++-....  ... .....-..  ..-.+++.+|+..    +.+...++...+........-+.|.+.|+|
T Consensus        45 ~~~~~l~D~~g~~~~~~--~~~-~~~~~~~~--~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~N  119 (209)
T d1nrjb_          45 GSGVTLVDFPGHVKLRY--KLS-DYLKTRAK--FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN  119 (209)
T ss_dssp             GSSCEEEECCCCGGGTH--HHH-HHHHHHGG--GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred             CeEEEEEecccccchhh--HHH-HHHHHHhh--hccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence            56688999999732221  111 22222211  1222333444433    233334443344444445567899999999


Q ss_pred             ccccccc
Q 025795          174 KMDLVTN  180 (248)
Q Consensus       174 k~dll~~  180 (248)
                      |+|+...
T Consensus       120 K~D~~~~  126 (209)
T d1nrjb_         120 KSELFTA  126 (209)
T ss_dssp             CTTSTTC
T ss_pred             eeccccc
Confidence            9999764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.13  E-value=6.1e-06  Score=67.80  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             HHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795           89 LAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA  135 (248)
Q Consensus        89 La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~  135 (248)
                      +...+....+..++|+||++. -++.....+...+++.|.+.+..+++
T Consensus       105 ~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~  152 (224)
T d1ewqa2         105 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF  152 (224)
T ss_dssp             HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEE
Confidence            333343333678999999998 99988888887899999765555443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=5.3e-06  Score=69.89  Aligned_cols=37  Identities=5%  Similarity=0.141  Sum_probs=29.6

Q ss_pred             CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+.++++|||-+ |+|...+.+. +++++..+ +.-++++
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~-~~Qviit  278 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFK-RLLKENSK-HTQFIVI  278 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHH-HHHHHHTT-TSEEEEE
T ss_pred             cCchhhhhhccccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence            779999999998 9999999988 88887754 4455443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=1.1e-05  Score=65.04  Aligned_cols=70  Identities=17%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeee-eecccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD  176 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~-vlsk~d  176 (248)
                      +..+-|+|.||--|..      .+.++.+...+..+++|   |+..=-.+..     .-........+.|++- ++||+|
T Consensus        66 ~~~i~iiDtPGh~df~------~~~~~~~~~aD~avlVv---da~~Gv~~qt-----~~~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          66 KRHYSHVDCPGHADYI------KNMITGAAQMDGAILVV---SAADGPMPQT-----REHILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             SCEEEEEECCCSGGGH------HHHHHHHTTCSSEEEEE---ETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CeEEEEEeCCCchhhH------HHHHHHHHHCCEEEEEE---ECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEEecc
Confidence            6789999999965533      35567776666666544   4332222221     1223333456888654 589999


Q ss_pred             cccch
Q 025795          177 LVTNK  181 (248)
Q Consensus       177 ll~~~  181 (248)
                      ++...
T Consensus       132 ~~~~~  136 (204)
T d2c78a3         132 MVDDP  136 (204)
T ss_dssp             GCCCH
T ss_pred             cCCCH
Confidence            97643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.08  E-value=9.6e-07  Score=66.81  Aligned_cols=24  Identities=42%  Similarity=0.540  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |+.+++|.||+||||||+++.|..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            888899999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.1e-07  Score=70.22  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      .+.|.||||+|||||++.+.+.+...++.+.+.+.++
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4789999999999999999999988777777666554

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=8e-07  Score=67.95  Aligned_cols=27  Identities=41%  Similarity=0.658  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+.+++|.||+||||||+++.|+..+.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            888899999999999999999998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.06  E-value=8.2e-07  Score=68.85  Aligned_cols=39  Identities=21%  Similarity=0.133  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      |+ +++|+|++|||||||+..|...++..+.+|.+.-.+.
T Consensus         1 Mk-ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           1 MN-VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CC-EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             Cc-EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            54 7899999999999999999998887777777765443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=2.5e-05  Score=60.29  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +++|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999973

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.5e-05  Score=65.73  Aligned_cols=50  Identities=12%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795           87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV  136 (248)
Q Consensus        87 ~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v  136 (248)
                      ..+...+....+..++|+||++. -++.....+...+++.+... +..++++
T Consensus       109 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~t  160 (234)
T d1wb9a2         109 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA  160 (234)
T ss_dssp             HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEe
Confidence            34444443333667999999998 88888888776788888654 3444433

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=2.3e-05  Score=69.49  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.-++|+|.+|+|||||++.|.|.-
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999999964

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=1.8e-06  Score=67.65  Aligned_cols=34  Identities=18%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      ++++||-||+||||||+++.|...+....-.+..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~   55 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccccccee
Confidence            5789999999999999999999877654444433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3e-06  Score=68.40  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+|++||.|+.||||||.++.+..+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHC
Confidence            8999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=2.5e-06  Score=65.63  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.++|+||+|||||||++.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.86  E-value=6.9e-06  Score=66.02  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++|+|..++|||||+..|.+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.85  E-value=2.2e-05  Score=62.90  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ..++|+|.-.+|||||+..|.|...
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhc
Confidence            3589999999999999999998654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=4.8e-06  Score=63.86  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+||+||||||+.+.|+..+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999999999865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.00014  Score=55.77  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .-++|+|++++|||||++.|.|.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999774

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.82  E-value=3.1e-06  Score=65.33  Aligned_cols=31  Identities=16%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH   34 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~   34 (248)
                      +++|.||+||||||+++.|+..+...+.++.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            6899999999999999999987765544443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.82  E-value=3.9e-06  Score=64.19  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+||+||||||+++.|+.-+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999998654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.81  E-value=5.1e-06  Score=65.66  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+++|+||+||||||+++.|+..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-06  Score=66.83  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      |+++||-||.||||||+.+.|+..+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            68999999999999999999988764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.79  E-value=0.00015  Score=59.05  Aligned_cols=102  Identities=18%  Similarity=0.344  Sum_probs=58.9

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCe-eeeecccc
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD  176 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~-~~vlsk~d  176 (248)
                      +..+-|+|+||--|..      .++++.+......+++|   |+..-..+...     -.+.....++.|+ +-++||+|
T Consensus        88 ~~~~~iiD~PGH~dfv------~~~~~g~~~aD~ailVv---da~~G~~~Qt~-----e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          88 KRKFIIADTPGHEQYT------RNMATGASTCDLAIILV---DARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SEEEEEEECCCSGGGH------HHHHHHHTTCSEEEEEE---ETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTT
T ss_pred             ceEEEEEeccchhhhh------hhhccccccCceEEEEe---ccccCcccchH-----HHHHHHHHcCCCEEEEEEEccc
Confidence            4579999999975543      24555665445555444   55444444432     2233344567786 45679999


Q ss_pred             cccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC----eeeEEeeccccH
Q 025795          177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES  235 (248)
Q Consensus       177 ll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~f~~l~~~~~~  235 (248)
                      +.....                      .+|....+.+..+++.++.    +.|+|+|...++
T Consensus       154 ~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~  194 (222)
T d1zunb3         154 LNGFDE----------------------RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD  194 (222)
T ss_dssp             TTTSCH----------------------HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred             cccccc----------------------eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCc
Confidence            865331                      1222333344445555544    789999887665

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.4e-06  Score=64.96  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |.+++|+||+||||||.++.|+..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.77  E-value=5.6e-06  Score=63.33  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.++.|.||+||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45788999999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.8e-06  Score=62.60  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.|+||+||||||+.+.|+..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999999865

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=7.3e-06  Score=65.83  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |.|++||.|+.||||||.++.+..+
T Consensus         1 M~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHC
Confidence            8999999999999999999998643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.74  E-value=7.8e-06  Score=62.57  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ++++.|+|++||||||+.+.|+..+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            37899999999999999999997664

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=5.5e-06  Score=65.60  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      |.+++++|++||||||+.+.|+..+....-++.+.+.|
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            57899999999999999999998765444455555444

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=9.4e-06  Score=62.23  Aligned_cols=25  Identities=40%  Similarity=0.456  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-+++|.||+||||||+++.|+..+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578899999999999999999765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=6.6e-06  Score=64.83  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|+||+||||||+++.|+..+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=7.8e-06  Score=62.69  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..++|.||+||||||+++.|+..+
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=8e-06  Score=64.63  Aligned_cols=24  Identities=33%  Similarity=0.636  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -+++|+||+||||||.++.|+..+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.3e-05  Score=68.95  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLD   39 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~--~G~i~i~~~d   39 (248)
                      +|++||.|++||||||+++.|..++...  +-+|.+...|
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            6899999999999999999999987632  3456555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=8.5e-06  Score=70.61  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      +.+||.||+|||||||+..+...+...+.+|.+.-.||..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss   94 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS   94 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence            6899999999999999999998887777788888888754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=1.4e-05  Score=62.96  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++++||.|+.||||||+++.|..+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            689999999999999999999754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.64  E-value=0.00016  Score=58.69  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      -++|+|.-++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999999885

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.61  E-value=0.00022  Score=62.92  Aligned_cols=99  Identities=23%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED   83 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~   83 (248)
                      .+.|.||.||||||++..+...+....++|.-.. ||-...++......               ..+         .-..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPiE~~~~~~~q~~---------------v~~---------~~~~  214 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQ---------------VNP---------RVDM  214 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEE---------------CBG---------GGTB
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCcccccCCCCeee---------------ecC---------CcCC
Confidence            4779999999999999999997765556665554 33211111100000               000         0112


Q ss_pred             hHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        84 ~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      .+..++..++-+  +||++++.|...  ..+...     .-+....|+.++.+
T Consensus       215 ~~~~~l~~~lR~--dPDvi~igEiRd--~~ta~~-----a~~aa~tGhlV~tT  258 (401)
T d1p9ra_         215 TFARGLRAILRQ--DPDVVMVGEIRD--LETAQI-----AVQASLTGHLVMST  258 (401)
T ss_dssp             CHHHHHHHHGGG--CCSEEEESCCCS--HHHHHH-----HHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHhh--cCCEEEecCcCC--hHHHHH-----HHHHHhcCCeEEEE
Confidence            244667777878  999999999874  333322     22344567766443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.59  E-value=1.5e-05  Score=61.90  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+||+||||||.++.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=1.7e-05  Score=62.11  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      .+++|+||+||||||+++.|....+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~   29 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNL   29 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            467899999999999999998876543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.58  E-value=1.7e-05  Score=63.55  Aligned_cols=26  Identities=35%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MG-YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |+ .+++|-||+||||||.++.|+..+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            53 567888999999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=1.8e-05  Score=62.52  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++.|+||+||||||.++.|+..+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.55  E-value=1.6e-05  Score=61.56  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |.-.++++|++||||||+.+.++..+
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            55556789999999999999998654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.55  E-value=1.8e-05  Score=61.81  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.52  E-value=2.4e-05  Score=60.41  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i   33 (248)
                      -+++|.|++||||||+++.|+..+...+-.+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            4567899999999999999998876543333

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.52  E-value=2e-05  Score=61.89  Aligned_cols=23  Identities=30%  Similarity=0.648  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++|+||+||||||.++.|+..+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.6e-05  Score=62.06  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+++.++|++||||||+.+.|+..+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999987654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.5e-05  Score=60.85  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999775

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.6e-05  Score=60.68  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .++|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=61.05  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+-.++|+||+||||||+++.|...
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHh
Confidence            6667899999999999999988854

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=7.1e-06  Score=63.56  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+|+|||||||||++.+|.-.+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4688999999999999998554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.4e-05  Score=61.29  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |.=+++|.||+||||||.++.|+..+
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33478999999999999999999765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.44  E-value=3.3e-05  Score=61.20  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-++|+||+||||||+++.|+..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999864

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.00081  Score=55.10  Aligned_cols=102  Identities=16%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-------ccChHHHHHHHHHHHHHHHhhCCCe-e
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-------ITDVTKFISGCMASLSAMVQLELPH-V  169 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~-------~~d~~~~~s~~l~~~~~~~~~~~p~-~  169 (248)
                      +-++-|+|.||--|...      ++++.+......+++|   |+..       ...+..     .-.....-.+++|+ +
T Consensus        83 ~~~i~iiDtPGH~df~~------~~~~g~~~~D~ailvv---da~~G~~e~g~~~~~QT-----~eh~~~~~~~gv~~ii  148 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIK------NMITGTSQADCAILII---AGGVGEFEAGISKDGQT-----REHALLAFTLGVRQLI  148 (239)
T ss_dssp             SEEEEEEECCCCTTHHH------HHHHSSSCCSEEEEEE---ECSHHHHHHHTCTTSHH-----HHHHHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCcHHHHH------HHHHHHHHhCEEEEEE---ECCCCccccccCchHhH-----HHHHHHHHHcCCCeEE
Confidence            56799999999766542      4455554445445433   4321       112221     11222233678886 4


Q ss_pred             eeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC----eeeEEeeccccH
Q 025795          170 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES  235 (248)
Q Consensus       170 ~vlsk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~----~~f~~l~~~~~~  235 (248)
                      .++||+|+....          .            .+|....+.+.+++..++.    +.|+|.+....+
T Consensus       149 v~iNKmD~~~~d----------~------------~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~  196 (239)
T d1f60a3         149 VAVNKMDSVKWD----------E------------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD  196 (239)
T ss_dssp             EEEECGGGGTTC----------H------------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred             EEEECCCCCCCC----------H------------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCC
Confidence            568999986432          0            1233444555555555543    788999865543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=3.2e-05  Score=60.43  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +.++.++|++||||||+++.+..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.4e-05  Score=60.17  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+||+||||||.++.|+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999999764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=2.8e-05  Score=61.16  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +++++|-|+.||||||+++.|+..+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.41  E-value=3.6e-05  Score=59.23  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999999875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.40  E-value=3.3e-05  Score=63.25  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.++.+.||+||||||+.+.|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45788999999999999999999764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.36  E-value=5.5e-05  Score=63.51  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++|+|+.|+|||||+..|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            479999999999999999953

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=4.6e-05  Score=58.58  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++++|++||||||+.+.++..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4577999999999999999765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.34  E-value=6.6e-05  Score=64.68  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      .+.|.||.||||||++++|.+.+++...-+.+
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            46899999999999999999999887766666

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=3.9e-05  Score=66.13  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      +.+||.||+|||||||+..+...+...+-+|.+.-.||..
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss   91 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   91 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence            6799999999999999999998766566678888778754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.32  E-value=0.00058  Score=57.07  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .++-|-||+||||||+|..++...+..+|.+.+.+-.     -.+    +       .+.++.+|+.+..-.+...+.. 
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE-----~~~----~-------~~~a~~~Gvd~d~i~~~~~~~~-  120 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE-----HAL----D-------PVYARALGVNTDELLVSQPDNG-  120 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----CCC----C-------HHHHHHTTCCGGGCEEECCSSH-
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC-----ccC----C-------HHHHHHhCCCchhEEEEcCCCH-
Confidence            4688999999999999999888766556666555321     112    1       1367777877653222211111 


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      +++ ..++..+....+++++|+|--++
T Consensus       121 E~~-~~~~~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         121 EQA-LEIMELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             HHH-HHHHHHHHTTTCCSEEEEECTTT
T ss_pred             HHH-HHHHHHHHhcCCCcEEEEecccc
Confidence            222 33444554433689999998876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=6.3e-05  Score=59.17  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ++|+||+||||||+.+.|....+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            57999999999999999976543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=6.5e-05  Score=63.37  Aligned_cols=20  Identities=15%  Similarity=0.164  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      .++|+|+.|||||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            48999999999999999984

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=6.7e-05  Score=59.30  Aligned_cols=22  Identities=36%  Similarity=0.700  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+||+||||||+++.|....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999987654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.24  E-value=0.00068  Score=54.42  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      .++.|.||+|||||||+.-++-......+.+.+.
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~i   60 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILF   60 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcccccee
Confidence            5788999999999999988876544444555544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.22  E-value=7.8e-05  Score=55.77  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++|+|++|+|||||++.+.+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999975

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00037  Score=56.31  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            5799999999999999998753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.001  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++.|.|++|+|||||+-.++-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3577999999999999877654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00011  Score=60.06  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM   33 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i   33 (248)
                      ..+++|++|+|||||++.|.|-.....|.|
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            578999999999999999988655544544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0001  Score=63.87  Aligned_cols=44  Identities=7%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             HHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           92 ELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        92 ~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      ++....++++++||||++ ||+..+..+. ++++++...+.-+|++
T Consensus       348 al~~~~~~pililDE~d~~Ld~~~~~~~~-~~l~~~~~~~~Q~I~i  392 (427)
T d1w1wa_         348 AINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI  392 (427)
T ss_dssp             HHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred             HHhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCCEEEEE
Confidence            344433677999999998 9999998888 8888775444445444

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00012  Score=61.87  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++++||-|+.|||||||++.|...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999886554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=7.8e-05  Score=57.01  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++++|++|+|||||++.+.+-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00012  Score=54.50  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++++|++|+|||||++.+.+-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999973

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00013  Score=58.57  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+++|+||+||||||+++.|....+
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3578999999999999999987654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.08  E-value=0.00013  Score=54.83  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34789999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.08  E-value=0.0027  Score=50.82  Aligned_cols=44  Identities=14%  Similarity=0.070  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCcc--CHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795           98 DDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ  142 (248)
Q Consensus        98 ~p~~lilDEPt~L--D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~  142 (248)
                      ..+++++|+-..+  .......++ .++..+.+.|..++++.-....
T Consensus        97 ~~dll~iDDi~~i~~~~~~~~~lf-~lin~~~~~~~~iiits~~~p~  142 (213)
T d1l8qa2          97 SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILASDRHPQ  142 (213)
T ss_dssp             TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEESSCGG
T ss_pred             hccchhhhhhhhhcCchHHHHHHH-HHHHHHhhccceEEEecCCcch
Confidence            6899999999873  455566667 8899888888888877544433

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.06  E-value=0.00014  Score=57.71  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEec
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVN   37 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i~~   37 (248)
                      .++.|.|++|+|||||+.-++ .........+.+..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s   62 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT   62 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence            567899999999999986544 23333334555543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.0011  Score=52.65  Aligned_cols=42  Identities=26%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             CCeEEEEE-cCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~ii-GpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |..+++|. +.-|+||||+.-.|+..+...+.+|.+.+.|+..
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~   43 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            77778888 7789999999999998887666789998888643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0016  Score=54.16  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      .++-|.||+||||||+|-.++......+|.+.+..-.-     .+.           .+.++.+|+.+..-.....+. .
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~-----~~~-----------~~~a~~~Gvd~d~v~~~~~~~-~  117 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-----ALD-----------PIYARKLGVDIDNLLCSQPDT-G  117 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-----CCC-----------HHHHHHTTCCGGGCEEECCSS-H
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc-----ccC-----------HHHHHHhCCCHHHEEEecCCC-H
Confidence            47889999999999999888876555556554443211     121           124566676543211111111 1


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCcc
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQI  110 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~L  110 (248)
                      +.. ..+...+..-.+++++++|--+++
T Consensus       118 E~~-~~~i~~l~~~~~~~liViDSi~al  144 (263)
T d1u94a1         118 EQA-LEICDALARSGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHH-HHHHHHHHHHTCCSEEEEECGGGC
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEECcccc
Confidence            111 222233332126899999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.02  E-value=4.1e-05  Score=65.00  Aligned_cols=37  Identities=19%  Similarity=0.114  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d   39 (248)
                      -++||.|++||||||+++.|...++..+-++.+...|
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            3799999999999999999998876555455554444

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.00  E-value=0.00031  Score=57.85  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++|+|.-++|||||+..|..
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            389999999999999999843

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.98  E-value=0.00016  Score=54.99  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|++|||||||++.+.+
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4578999999999999999876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.95  E-value=0.00023  Score=54.32  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|.+|||||||++.+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56889999999999999999873

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00023  Score=57.72  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN   37 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~   37 (248)
                      .+.+.||+|+||||++++++..+.   +++...+
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~---~~~~~~~   84 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG---YDILEQN   84 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH---hhhhccc
Confidence            578999999999999999998653   4454443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.0002  Score=57.75  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETV   29 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~   29 (248)
                      +.+.||+|+||||+.++++..+...
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCC
Confidence            5789999999999999999876543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.00017  Score=56.84  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      +++|-|+-||||||+++.|...++..+-.|.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~   33 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57899999999999999999887654445544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.88  E-value=0.00027  Score=57.20  Aligned_cols=28  Identities=18%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      .+.|.||+|+||||+++.++..++...+
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            5789999999999999999988765443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.86  E-value=0.0023  Score=52.38  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD   39 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~d   39 (248)
                      -.+.|.|++|+|||||+.-++-. ....+.+|.+....
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            35789999999999998888753 23334466665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00025  Score=55.97  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++|+|++|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0001  Score=60.55  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCce
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT   32 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~   32 (248)
                      ..+++|++|+|||||++.|.|-.....|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~  127 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNE  127 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--------
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcc
Confidence            46799999999999999998765443343

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00026  Score=56.92  Aligned_cols=23  Identities=39%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+.||+|+||||++++++..+.
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            57999999999999999997653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.0026  Score=53.00  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      -++-+.||+||||||+|-.++...+..+|.+.+.+-.-     .+.           .+.++.+|+.+..-..+..+. .
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~-----~~~-----------~e~a~~~GvD~d~il~~~~~~-~  123 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH-----ALD-----------PDYAKKLGVDTDSLLVSQPDT-G  123 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC-----CCC-----------HHHHHHHTCCGGGCEEECCSS-H
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc-----cCC-----------HHHHHHhCCCHHHeEEecCCC-H
Confidence            46789999999999998777766555566655543211     111           134566677654322211111 1


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQ  109 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~  109 (248)
                      +.. ..++..+..-.+++++|+|--++
T Consensus       124 E~~-~~~~~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         124 EQA-LEIADMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHH-HHHHHHHHHTTCEEEEEEECSTT
T ss_pred             HHH-HHHHHHHHhcCCCCEEEEecccc
Confidence            222 33444554433678999999887

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00034  Score=53.28  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |-++++|++|+|||||++.+.+-
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            66899999999999999998863

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.00028  Score=56.95  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.+.||+|+||||+.+++++.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999854

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0002  Score=57.49  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -.++|-|+-||||||+++.|+..+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.77  E-value=0.00038  Score=55.81  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++++.+.|.+||||||+.+.|...+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00045  Score=52.56  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.0

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MG-YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+ |-++|+|..|+|||||++.+.+-
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            55 78999999999999999998763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=9.9e-05  Score=55.71  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      ++++|++|+|||||++.|.|-
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.73  E-value=0.00037  Score=52.99  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++++|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.72  E-value=0.00035  Score=57.78  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .-++|+|.+|+|||||++.|.|.
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            46889999999999999999984

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00036  Score=55.82  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            5689999999999999998754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.71  E-value=0.00046  Score=55.69  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++||.|+.||||||.++.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999965

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.002  Score=55.46  Aligned_cols=65  Identities=14%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             EEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccccc
Q 025795          101 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT  179 (248)
Q Consensus       101 ~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~  179 (248)
                      +=|+|+||..|....      ....++..+..+++|--.+....   .     ...........++|.+-|+||+|.+.
T Consensus        98 inliDtPGh~dF~~e------v~~al~~~D~allVVda~eGv~~---q-----T~~~~~~a~~~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          98 INLIDSPGHVDFSSE------VTAALRVTDGALVVVDTIEGVCV---Q-----TETVLRQALGERIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEECCCCCCSSCHH------HHHHHHTCSEEEEEEETTTBSCH---H-----HHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             EEEEcCCCcHHHHHH------HHHHHhhcCceEEEEecccCcch---h-----HHHHHHHHHHcCCCeEEEEECccccc
Confidence            457999999887653      33445444555655533332222   1     22234456788999999999999854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.66  E-value=0.00034  Score=53.48  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|++|+|||||++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999999865

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.65  E-value=0.00059  Score=54.33  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      ||.+.+.=|.-|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            666666669999999999999998887666789999888754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00047  Score=52.73  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++|+|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            478999999999999999876

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.64  E-value=0.00048  Score=56.66  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ..+.+.||+|+|||++++.+++..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            457899999999999999999754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.00055  Score=52.27  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |-++++|++|+|||||++.+.+-
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            45899999999999999998763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00034  Score=56.05  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      .+++|-|+.||||||+++.|...+...+-.+.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            357788999999999999999987765545544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.61  E-value=0.017  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+|.-+||||||+++|.|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999954

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.00045  Score=58.66  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.++||+|+|||+++|++++.+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            457899999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00066  Score=51.49  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ..-++++|++|+|||||++.+.+
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            34578999999999999998775

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00063  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +|-++|+|.+|+|||||++.+.+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47789999999999999998775

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00069  Score=51.99  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|++|+|||||++.+.+
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998876

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00064  Score=52.38  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|.||+|||||||+..++...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999887643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00042  Score=54.97  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVR   30 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~   30 (248)
                      .++|-|+.||||||+++.|...+...+
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            466889999999999999998876543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00084  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|.+|+|||||++.+.+
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5688999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00085  Score=51.17  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |-++++|..|+|||||++.+.+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC
Confidence            66899999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00083  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|+.|+|||||++.+.+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5588999999999999999886

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.002  Score=55.37  Aligned_cols=20  Identities=40%  Similarity=0.655  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      +.+|+|||||||||++.+|+
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999984

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00071  Score=51.31  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++++|.+|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00083  Score=55.59  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.+.+.||+|+|||++++.++..+
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHc
Confidence            457899999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00091  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|++|+|||||++.+.+
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4578999999999999998875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00074  Score=53.96  Aligned_cols=22  Identities=27%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+.||+|+||||++++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            4689999999999999998654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0014  Score=50.19  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      |-++++|..|+|||||++.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCc
Confidence            568999999999999999998643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.00081  Score=54.20  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++.|.||.|+|||||++.++...
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHC
Confidence            57899999999999999887644

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00085  Score=50.69  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |-++|+|..|+|||||++.+.+-
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCcCHHHHHHHHHhC
Confidence            45789999999999999998863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.40  E-value=0.00085  Score=55.19  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -.+.+.||+|+||||+++.+++.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            367899999999999999999754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00099  Score=50.94  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|++|+|||||++.+.+
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5589999999999999987764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00099  Score=51.46  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++|+|++|+|||||++.+.+-
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            45789999999999999998853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.37  E-value=0.00059  Score=55.36  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++.+.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.001  Score=51.94  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|+.|+|||||++.+.+
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            5689999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.00087  Score=53.41  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +.+.||+|+||||++++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            4689999999999999999754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0011  Score=50.83  Aligned_cols=23  Identities=13%  Similarity=0.208  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++=++|+|.+|+|||||++.+.+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            45678999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00095  Score=50.62  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3478999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.001  Score=54.82  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.+.||+|+|||++++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            468899999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0012  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++++|..|+|||||++.+.+
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5588999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0006  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.580  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +|-++++|++|+|||||++.+.+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            57789999999999999887643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.001  Score=51.39  Aligned_cols=22  Identities=18%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|.+|+|||||++.+.+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|.+|+|||||++.+.+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=49.80  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             CC-eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MG-YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~-~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |+ |-++++|..|+|||||++.+.+-
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            54 77899999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.27  E-value=0.00056  Score=52.74  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~   23 (248)
                      +-++++|++|+|||||++.+.
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999999874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.26  E-value=0.00049  Score=58.60  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      .+.+.||+|+||||+++.+.+++++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            3689999999999999999999875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0012  Score=54.91  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      |.+-+||||-+-+|||||++++++-
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCC
Confidence            7788999999999999999999984

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0013  Score=52.86  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      |-.++|=|+-||||||+++.|..++..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            456889999999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=49.65  Aligned_cols=22  Identities=14%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|.+|+|||||++.+.+
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5679999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.22  E-value=0.011  Score=48.88  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .+++|.|+.|.|||||.+.+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999988643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0014  Score=49.90  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++++|..|+|||||++.+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6689999999999999999885

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.17  E-value=0.00074  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|++|+|||||++.+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0013  Score=54.57  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .++.+.||+|+|||++++++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC
Confidence            4688999999999999999999763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0015  Score=49.79  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++++|..|+|||||++.+.+
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5589999999999999998874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0015  Score=49.78  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++++|+.|+|||||++.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999886

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=50.22  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|..|+|||||++.+.+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3478999999999999999876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0017  Score=49.33  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|+.|+|||||++.+.+
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0018  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|.+|+|||||++.+.+
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5688999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0015  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      -++++|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999987753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0019  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++++|..|+|||||++.+.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6688999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.002  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +=++|+|..|+|||||++.+.+
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5588999999999999998775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.99  E-value=0.0012  Score=57.33  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      -++++.||+|+||||+++++++.+.   |.+.-
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~  184 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCG---GKALN  184 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC---CEEEC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence            4789999999999999999999764   55543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0021  Score=51.30  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      ..++|-|+-||||||+++.|+..++.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45779999999999999999988764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0017  Score=51.41  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++.|.||+|||||||+..++-
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3678999999999999987764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.94  E-value=0.0023  Score=48.69  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|..|+|||||++.+.+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5688999999999999998865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0013  Score=50.25  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=9.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      |-++|+|..|+|||||++.+.+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5578999999999999987764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.91  E-value=0.0024  Score=51.12  Aligned_cols=29  Identities=28%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH-hCCCCCCc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRR   31 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~~~G   31 (248)
                      |-+.++|++|+||||+++.+. +...|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            568999999999999999874 33334433

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0021  Score=49.50  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 025795            4 AQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      -++|+|.+|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0024  Score=49.14  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ++=++++|.+|+|||||++.+..
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45688999999999999987765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.83  E-value=0.0016  Score=58.01  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +-.+.++||+|||||-+++.|++.+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            44688999999999999999999763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0025  Score=49.15  Aligned_cols=20  Identities=35%  Similarity=0.576  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 025795            4 AQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~   23 (248)
                      =++++|.+|+|||||++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999883

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.69  E-value=0.0028  Score=50.56  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLY   23 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~   23 (248)
                      -++.|.||+|||||||+--++
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            578899999999999988665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0026  Score=53.10  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+++|+||.++|||||++.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            579999999999999999999853

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0028  Score=49.11  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .-++++|.+|+|||||++.+.+
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4478999999999999988775

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.62  E-value=0.0034  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++.+.|++|+||||++-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5688999999999999887664

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0037  Score=48.07  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +-++++|..|+|||||++.+.+-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            55899999999999999988753

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.58  E-value=0.0033  Score=52.64  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      +-+||+|.+.+|||||++++++--
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            458999999999999999999853

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.56  E-value=0.0034  Score=49.00  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++.|.||+|+||||+.-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999977763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0046  Score=47.37  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      .++++-|+=|||||||+|.++.-+..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            47889999999999999999976643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0037  Score=49.68  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      .++.|.||+|||||||+..++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0042  Score=47.89  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++|+|..|+|||||++.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            4589999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.0043  Score=47.31  Aligned_cols=29  Identities=28%  Similarity=0.265  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR   31 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G   31 (248)
                      +-++++|..|+|||||++.+..-..|+.|
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            34789999999999999988754444444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.46  E-value=0.0034  Score=52.82  Aligned_cols=21  Identities=33%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      +||+|.+-+|||||++.|+|-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999985

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0037  Score=49.54  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      ..+.+.||+|+||||+.+.++..+..
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhccc
Confidence            46789999999999999999986643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.006  Score=48.91  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      ++.|.|.=|||||||++.+...  ..+.++.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI   35 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVI   35 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEE
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEE
Confidence            5789999999999999998875  223456554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.27  E-value=0.0048  Score=48.53  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|.|++|+|||||+.-++-..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578899999999999999887543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.19  E-value=0.0062  Score=47.10  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ..++.|.|++|+||||++-.+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            35789999999999999866654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.15  E-value=0.0034  Score=51.61  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=21.5

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+++++||--.+.+...     .+++.+...+..++++
T Consensus       206 ~~~~i~vDE~QD~~~~~~-----~~l~~~~~~~~~~~~~  239 (306)
T d1uaaa1         206 KIRYLLVDEYQDTNTSQY-----ELVKLLVGSRARFTVV  239 (306)
T ss_dssp             TCSEEEESCGGGCBHHHH-----HHHHHHHTTTCCEEEE
T ss_pred             HhhHHHHHHHHHhhHHHH-----hhhhhcccCCCcceEe
Confidence            668899998776777654     4445555445555443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.025  Score=44.37  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC---ceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~---G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      ..+.+-||+|+||||+.+.++..+....   -++...+  |...      .+.|.+   ++++.+.+...|..       
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~--~~~~------~I~Id~---IR~i~~~~~~~~~~-------   77 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID--PEGE------NIGIDD---IRTIKDFLNYSPEL-------   77 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC--CSSS------CBCHHH---HHHHHHHHTSCCSS-------
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe--CCcC------CCCHHH---HHHHHHHHhhCccc-------
Confidence            4578999999999999999998653211   1222221  1111      111221   33444444443321       


Q ss_pred             hhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHH
Q 025795           80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH  125 (248)
Q Consensus        80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~  125 (248)
                                     .  +.+++|+||.-.+...++..+. +.+++
T Consensus        78 ---------------~--~~KviIId~ad~l~~~aqNaLL-K~LEE  105 (198)
T d2gnoa2          78 ---------------Y--TRKYVIVHDCERMTQQAANAFL-KALEE  105 (198)
T ss_dssp             ---------------S--SSEEEEETTGGGBCHHHHHHTH-HHHHS
T ss_pred             ---------------C--CCEEEEEeCccccchhhhhHHH-HHHhC
Confidence                           2  5679999999888887775555 44443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0055  Score=46.89  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g   24 (248)
                      +-++++|..|+|||||++.+..
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4478999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.07  E-value=0.0042  Score=51.61  Aligned_cols=15  Identities=40%  Similarity=0.592  Sum_probs=12.8

Q ss_pred             EEEEcCCCCcHHHHH
Q 025795            5 QLVIGPAGSGKSTYC   19 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~   19 (248)
                      +.|.|++||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            568999999999764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.005  Score=53.49  Aligned_cols=30  Identities=33%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH-hCCCCCCceEEE
Q 025795            5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHI   35 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i   35 (248)
                      +.|+|++||||||+++.+. ..+.. ++.+.+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~-g~~~ii   83 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLR-GDRMVI   83 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhC-CCCEEE
Confidence            5899999999999987544 44433 344444

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.007  Score=51.16  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.++||+|+|||.|.+.|+..+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            567999999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.87  E-value=0.0098  Score=50.60  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      +.+.||+|+|||.+.+.+++-+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhc
Confidence            34479999999999999998653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0079  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.+.||+|+||||+++.++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            467889999999999999987654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.014  Score=50.28  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=22.6

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV  136 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v  136 (248)
                      +.+++|+||-.++|.....    .++..+ ..+.++|++
T Consensus       261 ~~d~lIIDEaSmv~~~l~~----~ll~~~-~~~~~lILv  294 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMS----RLIDAL-PDHARVIFL  294 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHH----HHHHTC-CTTCEEEEE
T ss_pred             ccceeeehhhhccCHHHHH----HHHHHh-cCCCEEEEE
Confidence            4689999999999875432    344444 346666654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.61  E-value=0.0083  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      ++|+|.-+||||||+++|.|.-
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999964

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.01  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -+.++||+|.|||+++..++..+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46899999999999999998754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.01  Score=48.50  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      |+-++.+.|.=|.||||..-.++..+...+.+|.++..||+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~   48 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPAS   48 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            444567899999999999999988887777799999999853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.011  Score=49.07  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -+.++||+|+|||++++.++..+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            467999999999999999997543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.07  E-value=0.012  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.+.||.++|||||+.+|...+
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999986

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.99  E-value=0.015  Score=49.53  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL   38 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~   38 (248)
                      ..++|=|+=||||||+++.|...+...+..+.+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            347899999999999999999998876666666543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.94  E-value=0.0089  Score=47.55  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++++.||+++|||+++.+|.+++
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHh
Confidence            478899999999999999999986

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.93  E-value=0.024  Score=48.28  Aligned_cols=33  Identities=18%  Similarity=0.042  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      ..+.|=|+=||||||+++.|+..+.... .+.+.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            4578899999999999999999887654 44443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.014  Score=45.06  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=31.2

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795            4 AQLVIGPA-GSGKSTYCSSLYRHCETVRRTMHIVNLDP   40 (248)
Q Consensus         4 ~~~iiGpn-GSGKSTl~~~l~g~l~~~~G~i~i~~~d~   40 (248)
                      .+.|.|.+ |+||||++-.|+..+...+.+|.+...|+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            46789997 99999999999999988877888876554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.18  E-value=0.022  Score=48.45  Aligned_cols=23  Identities=30%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCC
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      ++|=|+=||||||+++.|...+.
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEECCcCCCHHHHHHHHHHHhC
Confidence            78899999999999999998765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.13  E-value=0.02  Score=49.28  Aligned_cols=23  Identities=43%  Similarity=0.756  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      .+.++||+|+|||-+.|.|+.+.
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhc
Confidence            36789999999999999999875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.03  E-value=0.036  Score=44.93  Aligned_cols=95  Identities=16%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhh
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN   84 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~   84 (248)
                      +.|.|++|+||+++.+.|...-..........+...      .    +  +.. .  .-..+|.... +.... .....+
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~------~----~--~~~-~--~~~lfg~~~~-~~~~~-~~~~~g   88 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVAS------I----P--RDI-F--EAELFGYEKG-AFTGA-VSSKEG   88 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTT------S----C--HHH-H--HHHHHCBCTT-SSTTC-CSCBCC
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhh------h----h--hcc-c--HHHhcCcccC-CcCCc-ccccCC
Confidence            678999999999999999876554444333322110      0    0  000 1  1112332111 00000 000011


Q ss_pred             HHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHH
Q 025795           85 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH  125 (248)
Q Consensus        85 ~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~  125 (248)
                         ++..+     +.-.|++||...|+...+..+. ++++.
T Consensus        89 ---~l~~a-----~gGtL~l~~i~~L~~~~Q~~L~-~~l~~  120 (247)
T d1ny5a2          89 ---FFELA-----DGGTLFLDEIGELSLEAQAKLL-RVIES  120 (247)
T ss_dssp             ---HHHHT-----TTSEEEEESGGGCCHHHHHHHH-HHHHH
T ss_pred             ---HHHcc-----CCCEEEEeChHhCCHHHHHHHH-HHHHh
Confidence               12211     5678999999999999988777 66654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.69  E-value=0.024  Score=47.71  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      .+.++||+|+|||.+.+.|+..+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            457889999999999999998764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.36  E-value=0.047  Score=44.04  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=34.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~   43 (248)
                      |+. ++|.|.=|+||||+.-.|+..+...+-+|.+.+.||...
T Consensus         1 mr~-Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~   42 (269)
T d1cp2a_           1 MRQ-VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD   42 (269)
T ss_dssp             CEE-EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred             CCE-EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            544 567899999999999999988877666899999998643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.05  Score=39.46  Aligned_cols=35  Identities=11%  Similarity=0.144  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh-CCCCC-CceEEEe
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYR-HCETV-RRTMHIV   36 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g-~l~~~-~G~i~i~   36 (248)
                      .|.+.+.|-+||||||+.++|.- +.+-. ++.|.+.
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll   42 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF   42 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence            48899999999999999999954 44433 3556654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.07  E-value=0.057  Score=44.16  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRH   25 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~   25 (248)
                      .-++|+|.+-+|||||++.|.|-
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEEecCccchhhhhhhhhcc
Confidence            45899999999999999999984

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.98  E-value=0.04  Score=45.96  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRHCET   28 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~l~~   28 (248)
                      -.+|+|++|+|||||+..++.....
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            4689999999999999999876543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.041  Score=44.45  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA   42 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~   42 (248)
                      -++++.|.=|+||||+.-.|+-.+...+.+|.+++.||..
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4677889999999999888887776666789999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.39  E-value=0.045  Score=47.43  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 025795            5 QLVIGPAGSGKSTYCSSLYR   24 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g   24 (248)
                      ..++||+|.|||+++..++.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            57999999999999876664

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.10  E-value=0.053  Score=44.30  Aligned_cols=42  Identities=31%  Similarity=0.412  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795            1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE   43 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~   43 (248)
                      |+. ++|-|.=|.||||+.-.|+..+...+-+|.+++.||...
T Consensus         2 Mr~-IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~   43 (289)
T d2afhe1           2 MRQ-CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD   43 (289)
T ss_dssp             CEE-EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred             ccE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            554 456899999999998888877665556899999999653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.71  E-value=0.045  Score=39.45  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=21.4

Q ss_pred             CCCEEEEeCCCccCHHhHHHHHHHHHHHHHh
Q 025795           98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS  128 (248)
Q Consensus        98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~  128 (248)
                      +-+++|+||--.++..+...+. .+++.+..
T Consensus        94 ~~~~vIiDE~H~~~~~~~~~~~-~~l~~~~~  123 (136)
T d1a1va1          94 AYDIIICDECHSTDATSILGIG-TVLDQAET  123 (136)
T ss_dssp             CCSEEEEETTTCCSHHHHHHHH-HHHHHTTT
T ss_pred             cCCEEEEecccccCHHHHHHHH-HHHHHHHH
Confidence            6799999999878877665544 55555543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.31  E-value=0.1  Score=43.01  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEe
Q 025795            4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIV   36 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~   36 (248)
                      -++|+|++|+|||||+..++.. .+.+.+.+.+.
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~  103 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  103 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE
Confidence            3689999999999998777654 33334444333

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.78  E-value=0.047  Score=38.64  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHH-HHHHHhCCCCCCceEEEe
Q 025795            3 YAQLVIGPAGSGKSTY-CSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl-~~~l~g~l~~~~G~i~i~   36 (248)
                      ..+.|.+|.|||||+. +..+.......+..+.+.
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~   42 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL   42 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeee
Confidence            3467889999999943 344444443334444443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.57  E-value=0.06  Score=42.67  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHI   35 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i   35 (248)
                      +.+++|.|||||+..-...-.....++++.+
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~~~~~rvli   91 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLALKGKRCYV   91 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHHTTSCCEEE
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHhcCeEEE
Confidence            5688999999998654444332223344444

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.48  E-value=0.2  Score=41.20  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=22.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      ++|+|++|+||||++..+.-........+.+.
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             EeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            57999999999999987655544444444443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.35  E-value=0.17  Score=37.16  Aligned_cols=124  Identities=15%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             CCeEEEEEcCCCCcHHH-HHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795            1 MGYAQLVIGPAGSGKST-YCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME   79 (248)
Q Consensus         1 ~~~~~~iiGpnGSGKST-l~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~   79 (248)
                      |.+...++||=.||||| |++.+..+ +..+.++.+.+-....+   |...+.           ...|..-..-.   ..
T Consensus         1 ~G~L~~i~GpMfsGKTteLi~~~~~~-~~~~~kv~~ikp~~D~R---~~~~i~-----------s~~g~~~~~~~---~~   62 (139)
T d2b8ta1           1 IGWIEFITGPMFAGKTAELIRRLHRL-EYADVKYLVFKPKIDTR---SIRNIQ-----------SRTGTSLPSVE---VE   62 (139)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCCGG---GCSSCC-----------CCCCCSSCCEE---ES
T ss_pred             CcEEEEEEccccCHHHHHHHHHHHHH-HHCCCcEEEEEEccccc---ccceEE-----------cccCceeeeEE---ec
Confidence            67889999999999999 66666544 33455666654322111   111000           00111100000   00


Q ss_pred             hhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795           80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF  150 (248)
Q Consensus        80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~  150 (248)
                      ...+-+..+.......  +.+++.+||---++.    .+. +++..+...|+.| +++=+|+-+-..|-.-
T Consensus        63 ~~~~~~~~~~~~~~~~--~~dvI~IDE~QFf~d----~i~-~~~~~~~~~g~~V-iv~GLd~Df~~~~F~~  125 (139)
T d2b8ta1          63 SAPEILNYIMSNSFND--ETKVIGIDEVQFFDD----RIC-EVANILAENGFVV-IISGLDKNFKGEPFGP  125 (139)
T ss_dssp             STHHHHHHHHSTTSCT--TCCEEEECSGGGSCT----HHH-HHHHHHHHTTCEE-EEECCSBCTTSSBCTT
T ss_pred             cchhhHHHHHhhcccc--CcCEEEechhhhcch----hHH-HHHHHHHhcCceE-EEEEeccccccCcCcc
Confidence            0000010111112223  789999999643542    122 5556666677776 4445777776665433

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.16  E-value=0.16  Score=42.65  Aligned_cols=16  Identities=31%  Similarity=0.630  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025795            4 AQLVIGPAGSGKSTYC   19 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~   19 (248)
                      +..+.|.+|+|||||-
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            4578999999999974

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.18  Score=42.30  Aligned_cols=16  Identities=31%  Similarity=0.630  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025795            4 AQLVIGPAGSGKSTYC   19 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~   19 (248)
                      +..+.|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3568999999999975

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.64  E-value=0.15  Score=47.16  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|.|.+|||||+-+|.+..++
T Consensus        87 QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.19  E-value=0.17  Score=47.13  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|-|.+|||||+-+|.+..++
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998876

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.18  E-value=0.17  Score=47.16  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -++.|-|.+|||||+-+|.+..++.
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999988763

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.06  E-value=0.11  Score=39.87  Aligned_cols=14  Identities=29%  Similarity=0.470  Sum_probs=12.1

Q ss_pred             EEEEcCCCCcHHHH
Q 025795            5 QLVIGPAGSGKSTY   18 (248)
Q Consensus         5 ~~iiGpnGSGKSTl   18 (248)
                      +.+.+|.|||||+.
T Consensus        43 ~il~apTGsGKT~~   56 (202)
T d2p6ra3          43 LLLAMPTAAGKTLL   56 (202)
T ss_dssp             EEEECSSHHHHHHH
T ss_pred             EEEEcCCCCchhHH
Confidence            56899999999875

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.79  E-value=0.28  Score=37.10  Aligned_cols=18  Identities=28%  Similarity=0.481  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 025795            5 QLVIGPAGSGKSTYCSSL   22 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l   22 (248)
                      ..|.+|.|||||...-.+
T Consensus        26 ~lv~~pTGsGKT~i~~~~   43 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMI   43 (200)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHH
Confidence            357899999999744333

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.40  E-value=0.086  Score=42.70  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHH-HH-HHHHhCC
Q 025795            4 AQLVIGPAGSGKST-YC-SSLYRHC   26 (248)
Q Consensus         4 ~~~iiGpnGSGKST-l~-~~l~g~l   26 (248)
                      .+.|.+|.|||||+ ++ .++....
T Consensus        11 ~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999999997 33 4444433

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.11  E-value=0.2  Score=47.22  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -++.|.|.+|||||+-+|.+..++.
T Consensus       124 QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999998888763

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.66  E-value=0.25  Score=41.51  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCcHHHHH
Q 025795            4 AQLVIGPAGSGKSTYC   19 (248)
Q Consensus         4 ~~~iiGpnGSGKSTl~   19 (248)
                      +..+.|.+|+|||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3568999999999987

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.44  E-value=0.35  Score=37.11  Aligned_cols=28  Identities=32%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795            5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV   36 (248)
Q Consensus         5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~   36 (248)
                      +.|+|+++||||.+...+++.    .+++.+.
T Consensus         2 iLVtGGarSGKS~~AE~l~~~----~~~~~Yi   29 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD----APQVLYI   29 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEE
T ss_pred             EEEECCCCccHHHHHHHHHhc----CCCcEEE
Confidence            689999999999999988743    3445443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=82.65  E-value=0.24  Score=46.52  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCE   27 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~   27 (248)
                      -++.|-|.+|||||.-+|.+..++.
T Consensus       122 Q~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999888888763

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.52  E-value=0.29  Score=45.57  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHC   26 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l   26 (248)
                      -++.|.|.+|||||+-.|.+..++
T Consensus        95 Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998865

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.20  E-value=0.47  Score=34.82  Aligned_cols=120  Identities=16%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcc-cChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795            2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVMEELGLGPNGGLIYCMEH   80 (248)
Q Consensus         2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~-~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~   80 (248)
                      .++..|+||=.|||||-+=.....++..+.++.+.+-....   .|..+ +.-+           .|.     ...|.  
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~---Ry~~~~i~sh-----------~g~-----~~~a~--   65 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN---RYSKEDVVSH-----------MGE-----KEQAV--   65 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------CEEECT-----------TSC-----EEECE--
T ss_pred             eeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEecccc---ccccceeeec-----------ccc-----eEEEE--
Confidence            47788999999999997655555455555567665532211   11110 0000           111     11010  


Q ss_pred             hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHH
Q 025795           81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI  151 (248)
Q Consensus        81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~  151 (248)
                      ..... ..+...+..  +++++++||---.+...    . ..+..+...|++| +++=+|+-+-.+|-.-+
T Consensus        66 ~~~~~-~~~~~~~~~--~~dvI~IDE~QFf~d~~----~-~~~~~l~~~g~~V-iv~GLd~Df~~~~F~~~  127 (141)
T d1xx6a1          66 AIKNS-REILKYFEE--DTEVIAIDEVQFFDDEI----V-EIVNKIAESGRRV-ICAGLDMDFRGKPFGPI  127 (141)
T ss_dssp             EESSS-THHHHHCCT--TCSEEEECSGGGSCTHH----H-HHHHHHHHTTCEE-EEEECSBCTTSCBCTTH
T ss_pred             Eecch-hhhhhhhcc--cccEEEEeehhhccccH----H-HHHHhheeCCcEE-EEEEeccccccCccchH
Confidence            00111 111223345  78999999964354221    2 3455566667775 55567877776665433

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.64  Score=33.59  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795            3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE   82 (248)
Q Consensus         3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~   82 (248)
                      ....|+||=.|||||-+=.....++..+.+|.+.+-....   .|........           +.......   .... 
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~---R~~~~~~~~~-----------~~~~~~~~---~~~~-   64 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT---RYSSSFCTHD-----------RNTMEALP---ACLL-   64 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC---C-------------------------CEE---ESSG-
T ss_pred             EEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccccc---CCcceeeecC-----------CCcceeee---eech-
Confidence            5678999999999997665555555555556665422211   1211100000           00000000   0001 


Q ss_pred             hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChH
Q 025795           83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT  148 (248)
Q Consensus        83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~  148 (248)
                          ..+.. ...  +++++++||---.+     ++. ++++.+...|++| +++=+|.-+-.+|-
T Consensus        65 ----~~~~~-~~~--~~d~I~IDEaQFf~-----dl~-~~~~~~~~~~~~V-iv~GLd~Df~~~~F  116 (133)
T d1xbta1          65 ----RDVAQ-EAL--GVAVIGIDEGQFFP-----DIV-EFCEAMANAGKTV-IVAALDGTFQRKPF  116 (133)
T ss_dssp             ----GGGHH-HHH--TCSEEEESSGGGCT-----THH-HHHHHHHHTTCEE-EEECCSBCTTSSBC
T ss_pred             ----hhhhh-hhc--ccceEEeehhHHHH-----HHH-HHHHHHHhcCCcE-EEEEeccccccCcc
Confidence                01111 123  78999999964465     233 5555665667776 45567777766554