Citrus Sinensis ID: 025802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MAHLAARRTVASIITRTLTSPRSRLAIPILNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQYRFTERQQRPRTRRRETTQADRRRLWAQNQSAPSQQPTSMSNQNPAQAGGTNFSINQGQNNQKSA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEEEEEEEcEEEcHHHHHHHcccccEEEEcccccccccccccccccccccEEEccccccHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEEcHHHHHHHcccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAHLAARRTVASIITRtltsprsrlaipilnkqqpqigpdpicnparfktsgssysplndpspnwsnrppketimldgcdyqHWLIVmefpnpselseEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEElsykvkgqpgvlwvlpdsyidvpnkdyggdlfvdgkvihrpqyrfterqqrprtrrretTQADRRRLWaqnqsapsqqptsmsnqnpaqaggtnfsinqgqnnqksa
Flexible Loop (DISEMBL)
mahlaarrtvasiitrtltsprsrlaipilnkqqpqigpdPICNPARFKTSGssysplndpspnwsNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVgseeeakkkiysVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFvdgkvihrpqyrfterqqrprtrrrettqadrrrlwaqnqsapsqqptsmSNQNPAQAGGtnfsinqgqnnqksa
Low Complexity Region (SEG)
MAHLAARRTVASIITRTLTSPRSRLAIPILNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQYrfterqqrprtrrrettqadrrrLWAQNQSAPSQQPTSMSNQNPAQAGGTNFSINQGQNNQKSA
Disordered region (IsUnstruct)
**********ASIITRTL*******AIPI*******************************************TIMLDGCDYQHWLIVMEFPNP****EEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQYRF**************************************************************
Disordered Region (DISOPRED)
**************************************************************************MLDGCDYQHWLIVMEFPN****SEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGK***********************************************************************
Disordered Region (DISEMBL)
********TVASIITRTLTSPRSRLAIPILNKQQPQIGPDPICNPARFKTS*************WSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQYRFTE*****************************************QAGGTNFSINQ********
Disordered Region (DISPRO)
********TVASIITRTL*****RLAI*******PQIGP****************************RPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQY****************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHLAARRTVASIITRTLTSPRSRLAIPILNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRPQYRFTERQQRPRTRRRETTQADRRRLWAQNQSAPSQQPTSMSNQNPAQAGGTNFSINQGQNNQKSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9LKA5	395	Uncharacterized protein A	no	no	0.520	0.326	0.610	3e-43
Q38732	230	DAG protein, chloroplasti	N/A	no	0.544	0.586	0.549	4e-38

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 105/131 (80%), Gaps = 2/131 (1%)

Query: 56  SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGS 115
           S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P   E + +E+I++Y+KTLA +VGS
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQ-GEPTRDEIIDSYIKTLAQIVGS 130

Query: 116 EEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVD 175
           E+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYGG+ F+D
Sbjct: 131 EDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFID 190

Query: 176 GKVI-HRPQYR 185
           GK + + P+Y 
Sbjct: 191 GKAVPYDPKYH 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 100/142 (70%), Gaps = 7/142 (4%)

Query: 73  TIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYT 132
           TIML GCDY HWLIVMEFP     + E+MI+ Y+ TLA V+GS EEAKK +Y+  TTTYT
Sbjct: 78  TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYT 137

Query: 133 GFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI------HRP-QYR 185
           GF   + EE S K KG PGVLWVLPDSYIDV NKDYGGD +V+G++I      ++P Q R
Sbjct: 138 GFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSR 197

Query: 186 FTERQQRPRTRRRETTQADRRR 207
            ++ + +   R+R+   A++RR
Sbjct: 198 SSKYKSKAYVRQRDGPPAEQRR 219

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
225431796	260	PREDICTED: uncharacterized protein At3g1	0.963	0.919	0.642	1e-84
255551847	262	DAG protein, chloroplast precursor, puta	0.987	0.935	0.647	3e-83
449516421	277	PREDICTED: uncharacterized protein At3g1	0.983	0.880	0.624	3e-83
449465561	277	PREDICTED: uncharacterized protein At3g1	0.983	0.880	0.620	8e-83
224110350	261	predicted protein [Populus trichocarpa]	0.983	0.934	0.617	5e-82
118483610	261	unknown [Populus trichocarpa]	0.983	0.934	0.613	4e-81
388493544	263	unknown [Medicago truncatula]	0.963	0.908	0.6	5e-76
357134159	250	PREDICTED: DAG protein, chloroplastic-li	0.927	0.92	0.625	3e-75
388498556	263	unknown [Medicago truncatula]	0.963	0.908	0.596	7e-75
356564316	247	PREDICTED: uncharacterized protein At3g1	0.935	0.939	0.604	3e-74

>gi|225431796|ref|XP_002272388.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera] gi|147819172|emb|CAN69219.1| hypothetical protein VITISV_012015 [Vitis vinifera] gi|296083326|emb|CBI22962.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/260 (64%), Positives = 191/260 (73%), Gaps = 21/260 (8%)

Query: 1   MAHLAARRTVASIITRTLTSPRS----------RLAIPILNKQQPQIGPDPICNPARFKT 50
           MA    RRT+A  ++RTL+   S          R A  +++K  P +  +    P R KT
Sbjct: 1   MALFTGRRTLARFLSRTLSQSFSSSSLLASSRSRFAFALIDKHSPPLVSNSARVPTRLKT 60

Query: 51  SGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLA 110
           SGS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLIVMEFPN S+ SE+EMI AYVKTLA
Sbjct: 61  SGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDSKPSEDEMIAAYVKTLA 120

Query: 111 AVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGG 170
           AVVGSEEEAKKKIYSVCTTTYTGFGALI EELSYKVK  PGVLWVLPDSY+DVPNKDYGG
Sbjct: 121 AVVGSEEEAKKKIYSVCTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGG 180

Query: 171 DLFVDGKVIHRPQYRFTERQ------QRPRTRRRETTQADRRRL-----WAQNQSAPSQQ 219
           DLF+DGKVIHRPQYR+ ERQ      +    RRRET Q +RR       WAQ++  P  Q
Sbjct: 181 DLFIDGKVIHRPQYRYNERQPTRSRPRPRYDRRRETMQVERREPMQRDNWAQDRREPMHQ 240

Query: 220 PTSMSNQNPAQAGGTNFSIN 239
           PTSM++QN  Q GG + S+N
Sbjct: 241 PTSMNDQNSPQGGGRDPSLN 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551847|ref|XP_002516969.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223544057|gb|EEF45583.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 195/264 (73%), Gaps = 19/264 (7%)

Query: 1   MAHLAARRTVASIITRTLTSPRSRLA--------IPILNKQQPQIGPDPICNPARFKTSG 52
           MA+L ARR+VASI+ RTL S  S  +        I  L  + P     P  NP R KTS 
Sbjct: 1   MAYLTARRSVASILNRTLNSSFSSSSSVSSRSRFIFSLLSKNPLSELHP--NPTRSKTSR 58

Query: 53  SSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAV 112
           S YSPLNDPSPNWSNRPPKE+I+LDGCDY+HWLIVMEFPN  + SEEEMINAYVKTLA+V
Sbjct: 59  SGYSPLNDPSPNWSNRPPKESILLDGCDYEHWLIVMEFPNDPKPSEEEMINAYVKTLASV 118

Query: 113 VGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDL 172
           +GSEEEAKKKIYSV TTTYTGFGALI EELSYK+KG PGVLWVLPDSY+DVPNKDYGGDL
Sbjct: 119 LGSEEEAKKKIYSVSTTTYTGFGALISEELSYKLKGLPGVLWVLPDSYLDVPNKDYGGDL 178

Query: 173 FVDGKVIHRPQYRFTE--RQQ-----RPR-TRRRETTQADRRRLWAQNQSAPS-QQPTSM 223
           FVDGKVIHRP YRF +  RQQ     RPR  RR E+ Q +RR    +  S PS QQP+S 
Sbjct: 179 FVDGKVIHRPMYRFNQNNRQQTRNRSRPRYDRRNESMQVERREPMQRQSSGPSLQQPSSN 238

Query: 224 SNQNPAQAGGTNFSINQGQNNQKS 247
             Q+ +Q GGT+ S+  G+ NQ +
Sbjct: 239 HIQSSSQGGGTDVSMEPGKVNQST 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516421|ref|XP_004165245.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis sativus]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/274 (62%), Positives = 195/274 (71%), Gaps = 30/274 (10%)

Query: 1   MAHLAARRTVASIITRTL----------------TSPRSRLAIPILNKQQPQIGPDPICN 44
           MA  A RRT+ ++++R++                 S R R A P+LN+Q  QI P     
Sbjct: 1   MASSATRRTLFTVLSRSISSSSSSSSSFLLPSPPISSRLRFAFPLLNRQD-QIIPASFNL 59

Query: 45  PARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINA 104
           P RFK SGS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLIV+EFPN  + SEEEM+N 
Sbjct: 60  PIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEFPNDPKPSEEEMVNT 119

Query: 105 YVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVP 164
           YVKTLAAVVGSEEEAKKKIYSV TTTYTGFGALI EELSYKVK  PGVLWVLPDSY+DVP
Sbjct: 120 YVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVP 179

Query: 165 NKDYGGDLFVDGKVIHRPQYRFTERQQRP--------RTRRRETTQADRRRL-----WAQ 211
           NKDYGGDLF+DGKVI RPQYR+ +R Q+P          RRRET Q DRR+      W Q
Sbjct: 180 NKDYGGDLFIDGKVIPRPQYRYHDRPQQPGRNRPRPRYDRRRETMQVDRRQPIQRQNWGQ 239

Query: 212 NQSAPSQQPTSMSNQNPAQAGGTNFSINQGQNNQ 245
           NQS P Q P SM  QN  Q+G  +FS N G+ N+
Sbjct: 240 NQSDPMQPPPSMDGQNRVQSGIGDFSTNPGEFNR 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465561|ref|XP_004150496.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Cucumis sativus]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/274 (62%), Positives = 195/274 (71%), Gaps = 30/274 (10%)

Query: 1   MAHLAARRTVASIITRTL----------------TSPRSRLAIPILNKQQPQIGPDPICN 44
           MA  A RRT+ ++++R++                 S R R A P+LN+Q  QI P     
Sbjct: 1   MASSATRRTLFTVLSRSISSSSSSSSSFLLPSPPISSRLRFAFPLLNRQD-QIIPASFNL 59

Query: 45  PARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINA 104
           P RFK SGS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLIV++FPN  + SEEEM+N 
Sbjct: 60  PIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLDFPNDPKPSEEEMVNT 119

Query: 105 YVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVP 164
           YVKTLAAVVGSEEEAKKKIYSV TTTYTGFGALI EELSYKVK  PGVLWVLPDSY+DVP
Sbjct: 120 YVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVP 179

Query: 165 NKDYGGDLFVDGKVIHRPQYRFTERQQRP--------RTRRRETTQADRRRL-----WAQ 211
           NKDYGGDLF+DGKVI RPQYR+ +R Q+P          RRRET Q DRR+      W Q
Sbjct: 180 NKDYGGDLFIDGKVIPRPQYRYHDRPQQPGRNRPRPRYDRRRETMQVDRRQPIQRQNWGQ 239

Query: 212 NQSAPSQQPTSMSNQNPAQAGGTNFSINQGQNNQ 245
           NQS P Q P SM  QN  Q+G  +FS N G+ N+
Sbjct: 240 NQSDPMQPPPSMDGQNRVQSGIGDFSTNPGEFNR 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110350|ref|XP_002315492.1| predicted protein [Populus trichocarpa] gi|222864532|gb|EEF01663.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/264 (61%), Positives = 194/264 (73%), Gaps = 20/264 (7%)

Query: 1   MAHLAARRTVASIITRTLTSPRSRLAI--PILNKQQPQIGPDPICNPARFKTSGSSYSPL 58
           MA++ ARR +A+++TR L+S  SR      + NK Q  + PD +    R KT+GS YSPL
Sbjct: 1   MAYITARRNLATLLTRALSSSSSRTRFSPALFNKIQTSLIPDSVKTLTRSKTTGSGYSPL 60

Query: 59  NDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEE 118
           NDPSPNW+NRPPKETI+LDGCDY HWLIVMEFPN  + +EEEMINAYVKTL++V+GSEEE
Sbjct: 61  NDPSPNWTNRPPKETILLDGCDYNHWLIVMEFPNDPKPTEEEMINAYVKTLSSVLGSEEE 120

Query: 119 AKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKV 178
           AKK IYSV TTTYTGFGALI EELSYKVK  PGVLWVLPDSY+DVPNKDYGGDL+ DGKV
Sbjct: 121 AKKSIYSVSTTTYTGFGALISEELSYKVKALPGVLWVLPDSYLDVPNKDYGGDLYEDGKV 180

Query: 179 IHRPQYRFTERQQRP---------------RTRRRETTQADRRRLWAQNQSAPSQQPTSM 223
           IHRPQYR+ ERQQ+                +  RRET Q   R+ W+Q+   P++QP S 
Sbjct: 181 IHRPQYRYNERQQQTRNRPRPRYDRRRETMQVERRETVQ---RQNWSQDPRPPAKQPASD 237

Query: 224 SNQNPAQAGGTNFSINQGQNNQKS 247
           + QN  Q GG  FS+NQGQ NQ +
Sbjct: 238 NVQNSTQGGGGEFSMNQGQFNQST 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483610|gb|ABK93700.1| unknown [Populus trichocarpa]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/264 (61%), Positives = 193/264 (73%), Gaps = 20/264 (7%)

Query: 1   MAHLAARRTVASIITRTLTSPRSRLAI--PILNKQQPQIGPDPICNPARFKTSGSSYSPL 58
           MA++ ARR +A+++TR L+S  SR      + NK Q  + PD +    R KT+GS YSPL
Sbjct: 1   MAYITARRNLATLLTRALSSSSSRTRFSPALFNKIQTSLIPDSVKTLTRSKTTGSGYSPL 60

Query: 59  NDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEE 118
           NDPSPNW+NR PKETI+LDGCDY HWLIVMEFPN  + +EEEMINAYVKTL++V+GSEEE
Sbjct: 61  NDPSPNWTNRQPKETILLDGCDYNHWLIVMEFPNDPKPTEEEMINAYVKTLSSVLGSEEE 120

Query: 119 AKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKV 178
           AKK IYSV TTTYTGFGALI EELSYKVK  PGVLWVLPDSY+DVPNKDYGGDL+ DGKV
Sbjct: 121 AKKSIYSVSTTTYTGFGALISEELSYKVKALPGVLWVLPDSYLDVPNKDYGGDLYEDGKV 180

Query: 179 IHRPQYRFTERQQRP---------------RTRRRETTQADRRRLWAQNQSAPSQQPTSM 223
           IHRPQYR+ ERQQ+                +  RRET Q   R+ W+Q+   P++QP S 
Sbjct: 181 IHRPQYRYNERQQQTRNRPRPRYDRRRETMQVERRETVQ---RQNWSQDPRPPAKQPASD 237

Query: 224 SNQNPAQAGGTNFSINQGQNNQKS 247
           + QN  Q GG  FS+NQGQ NQ +
Sbjct: 238 NVQNSTQGGGGEFSMNQGQFNQST 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493544|gb|AFK34838.1| unknown [Medicago truncatula]

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/260 (60%), Positives = 185/260 (71%), Gaps = 21/260 (8%)

Query: 1   MAHLAARRTVASIITRTLTSP---------RSRLAIPILNKQQPQIGPDPICNPARFKTS 51
           MA+  ARRT+ASI+TR L+S          R+R A   L+    Q  P P   P RFK+S
Sbjct: 1   MAYTNARRTLASILTRALSSSSSSGIASLNRTRFAF-ALSSASRQTLPIPHSFPVRFKSS 59

Query: 52  GSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAA 111
           GS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLI+MEFP+  + SE+EM+N+YVKTLA 
Sbjct: 60  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIIMEFPDNPKPSEDEMVNSYVKTLAQ 119

Query: 112 VVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGD 171
           V+GSEEEAKKKIYSV T+TY GFGAL+ EELSYK+K  PGVLWVLPDSY+DVPNKDYGGD
Sbjct: 120 VLGSEEEAKKKIYSVSTSTYIGFGALVSEELSYKIKELPGVLWVLPDSYLDVPNKDYGGD 179

Query: 172 LFVDGKVIHRPQYRFTER------QQRPRTRRRETTQADR-----RRLWAQNQSAPSQQP 220
           LFVDGKVI RPQYR+TER       +    RRRET Q +R     R+ W Q Q    Q  
Sbjct: 180 LFVDGKVIPRPQYRYTERAPSRNRPRPRHDRRRETMQVERRDPNQRQNWNQVQGEHMQPS 239

Query: 221 TSMSNQNPAQAGGTNFSINQ 240
             M++QN A  G ++   N+
Sbjct: 240 NPMNSQNSASGGESHEMFNR 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134159|ref|XP_003568685.1| PREDICTED: DAG protein, chloroplastic-like [Brachypodium distachyon]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/240 (62%), Positives = 170/240 (70%), Gaps = 10/240 (4%)

Query: 1   MAHLAARRTVASIITRTLTSPRSRLAIPILNKQQPQIGP-DPICNPARFKTSG-SSYSPL 58
           MA    RR ++ ++  +    R  L +         + P  P    A+    G S YSPL
Sbjct: 1   MAAAGIRRRISELLLSSRAPHRRFLPLAAAAVSSAHLAPWAPPSRGAKTALPGKSGYSPL 60

Query: 59  NDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEE 118
           NDPSPNWSNRPPKETI+LDGCDY+HWLIVMEFP   + SEEEM+ AYVKTL AV+GSEEE
Sbjct: 61  NDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPTDPKPSEEEMVAAYVKTLTAVIGSEEE 120

Query: 119 AKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKV 178
           AKKKIYSVCTTTYTGFGALI EELSYKVKG PGVLWVLPDSY+DVPNKDYGGDLF+DGKV
Sbjct: 121 AKKKIYSVCTTTYTGFGALISEELSYKVKGLPGVLWVLPDSYLDVPNKDYGGDLFIDGKV 180

Query: 179 IHRPQYRFTERQQ---RPRTR---RRETTQADRRRLWAQNQSAPSQQP--TSMSNQNPAQ 230
           IHRPQ++FTERQQ   RPR R   RRET QADRR +     S   Q+P  +     NP Q
Sbjct: 181 IHRPQFQFTERQQVRSRPRPRYDKRRETMQADRREVMKNGPSIQEQRPPFSGEVAHNPEQ 240

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498556|gb|AFK37344.1| unknown [Medicago truncatula]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/260 (59%), Positives = 184/260 (70%), Gaps = 21/260 (8%)

Query: 1   MAHLAARRTVASIITRTLTSP---------RSRLAIPILNKQQPQIGPDPICNPARFKTS 51
           MA+  ARRT+ASI+TR L+S          R+R A   L+    Q  P P   P RFK+S
Sbjct: 1   MAYTNARRTLASILTRALSSSSSSGIASLNRTRFAF-ALSSAFRQTLPIPHSFPVRFKSS 59

Query: 52  GSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAA 111
           GS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLI+MEFP+  + SE+EM+N+YVKTLA 
Sbjct: 60  GSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIIMEFPDNPKPSEDEMVNSYVKTLAQ 119

Query: 112 VVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGD 171
           V+GSEEEAKKKIYSV T+TY GFGAL+ EELSYK+K  PGVLWVLPDSY+DVPNKDYGGD
Sbjct: 120 VLGSEEEAKKKIYSVSTSTYIGFGALVSEELSYKIKELPGVLWVLPDSYLDVPNKDYGGD 179

Query: 172 LFVDGKVIHRPQYRFTER------QQRPRTRRRETTQADR-----RRLWAQNQSAPSQQP 220
           LFVDGKVI RPQYR+ ER       +    RRRET Q +R     R+ W Q Q    Q  
Sbjct: 180 LFVDGKVIPRPQYRYAERAPSRNRPRPRHDRRRETMQVERRDPNQRQNWNQVQGEHMQPS 239

Query: 221 TSMSNQNPAQAGGTNFSINQ 240
             M++QN A  G ++   N+
Sbjct: 240 NPMNSQNSAPGGESHEMFNR 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564316|ref|XP_003550401.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Glycine max]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/245 (60%), Positives = 182/245 (74%), Gaps = 13/245 (5%)

Query: 1   MAHLAARRTVA-----SIITRTLTSPRSRLAIPILNKQQPQIGPDPICNPARFKTSGSSY 55
           MA+L ARRT+A     ++ + + ++ R R A+ + + +Q    P P     R ++SGS Y
Sbjct: 1   MAYLNARRTLAYRLAGALSSSSASASRCRFALALHHAKQTVPIPHPASFAVRTQSSGSGY 60

Query: 56  SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGS 115
           SPLNDPSPNWSNRPPKETI+LDGCDY+HWLIVMEFP+  + SE+ M+N+YVKTLA V+GS
Sbjct: 61  SPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPDNPKPSEDHMVNSYVKTLAQVLGS 120

Query: 116 EEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVD 175
           EEEAKKKIYSV T+TYTGFGALI EELSYKVK  PGVLWVLPDSY+DVPNKDYGGDLFVD
Sbjct: 121 EEEAKKKIYSVSTSTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFVD 180

Query: 176 GKVIHRPQYRFTERQ---QRPR---TRRRETTQADRR--RLWAQNQSAPSQQPTSMSNQN 227
           GKVI RPQYR+++RQ    RPR    R+R+T Q +RR  + W Q      Q  T+M++QN
Sbjct: 181 GKVIPRPQYRYSDRQPSRSRPRPRHDRQRQTMQVERRDQQNWNQGPGGSMQPSTAMNSQN 240

Query: 228 PAQAG 232
               G
Sbjct: 241 FVSGG 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.729	0.741	0.658	6e-64
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.536	0.336	0.602	6.7e-45
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.524	0.593	0.590	7e-38
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.729	0.790	0.461	8.9e-38
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.544	0.581	0.583	1.9e-37
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.487	0.521	0.622	1.3e-36
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.701	0.465	0.424	2.3e-30
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.451	0.267	0.5	6.8e-30
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.528	0.181	0.439	1.9e-25
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.495	0.640	0.455	2e-24

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 131/199 (65%), Positives = 157/199 (78%)

Query:     1 MAHLAARRTVASIITRTLTS--------P----RSRLAIPILNK---QQPQIGPDPICNP 45
             MA ++ RRT+++++ +TL+S        P    RSR A+P++ K    +  +GP  I   
Sbjct:     1 MALISTRRTLSTLLNKTLSSSTSYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYIST- 59

Query:    46 ARFKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAY 105
              R KTSGS YSPLNDPSPNWSNRPPKETI+LDGCDY+HWLIVMEF +P   +EEEMIN+Y
Sbjct:    60 -RPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFTDPKP-TEEEMINSY 117

Query:   106 VKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPN 165
             VKTL +V+G +EEAKKKIYSVCT+TYTGFGALI EELS KVK  PGVLWVLPDSY+DVPN
Sbjct:   118 VKTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSCKVKALPGVLWVLPDSYLDVPN 177

Query:   166 KDYGGDLFVDGKVIHRPQY 184
             KDYGGDL+V+GKVI RPQY
Sbjct:   178 KDYGGDLYVEGKVIPRPQY 196

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 82/136 (60%), Positives = 108/136 (79%)

Query:    50 TSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTL 109
             T  +S S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P   E + +E+I++Y+KTL
Sbjct:    67 TQATS-SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTL 124

Query:   110 AAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYG 169
             A +VGSE+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYG
Sbjct:   125 AQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYG 184

Query:   170 GDLFVDGKVI-HRPQY 184
             G+ F+DGK + + P+Y
Sbjct:   185 GEPFIDGKAVPYDPKY 200

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 78/132 (59%), Positives = 101/132 (76%)

Query:    51 SGSSYSPLNDPSPNWSNRPPKETIML-DGCDYQHWLIVMEFPNPSELSEEEMINAYVKTL 109
             SGS+YSPLN  S N+S+RPP E   L  GCDY+HWLIVM+ P     ++++MI+ Y++TL
Sbjct:    54 SGSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTL 112

Query:   110 AAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYG 169
             A VVGSEEEAKK+IY+V    Y GFG  IDEE S K++G PGVL+VLPDSY+D  NKDYG
Sbjct:   113 AKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYG 172

Query:   170 GDLFVDGKVIHR 181
              +LFV+G+++ R
Sbjct:   173 AELFVNGEIVQR 184

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 90/195 (46%), Positives = 123/195 (63%)

Query:     1 MAHLAARRTVASIITRTLTSPRSRLAIP--ILNKQQPQIGPDP---ICNPARFKT----- 50
             MA   AR T + I  R +++  +    P  IL+++   +       I +  RF T     
Sbjct:     1 MAKTLARSTASRITKRLISTSGATTPSPSYILSRRSTPVFSHAVGFISSLNRFTTIRTRM 60

Query:    51 --SGSSYSPLNDPSPNWSNRPPKETIML-DGCDYQHWLIVMEFPNPSELSEEEMINAYVK 107
               SG SYSPL   S N+S+R P E   L  GCDY+HWLIVM+ P     ++++MI+ YV+
Sbjct:    61 DRSGGSYSPLKSGS-NFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQ 119

Query:   108 TLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKD 167
             TLA ++GSEEEAKKKIY+V    Y GFG  IDEE S K++G PGVL++LPDSY+D  NKD
Sbjct:   120 TLAKIIGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKD 179

Query:   168 YGGDLFVDGKVIHRP 182
             YG +LFV+G+++ RP
Sbjct:   180 YGAELFVNGEIVQRP 194

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 80/137 (58%), Positives = 99/137 (72%)

Query:    47 RFKTSGSSYSPLNDPSPNWSNRPPKETIML-DGCDYQHWLIVMEFPNPSELSEEEMINAY 105
             R   SG SYSPL   S N+S+RPP E   L  GCDY+HWLIVME P      +++MI+ Y
Sbjct:    62 RMDRSGGSYSPLKSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCY 120

Query:   106 VKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPN 165
             V+TLA +VGSEEEA+KKIY+V    Y GFG  IDEE S K++G PGVL+VLPDSY+D   
Sbjct:   121 VQTLAKIVGSEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEF 180

Query:   166 KDYGGDLFVDGKVIHRP 182
             KDYG +LFV+G+V+ RP
Sbjct:   181 KDYGAELFVNGEVVPRP 197

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 76/122 (62%), Positives = 90/122 (73%)

Query:    59 NDPSPNWSN-RPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEE 117
             +D S   SN    +ETIML GCDY HWLIVMEFP     S ++MI+ Y+ TLA V+GS E
Sbjct:    64 SDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSME 123

Query:   118 EAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGK 177
             EAKK +Y+  TTTYTGF   IDEE S K KG PGVLWVLPDSYIDV NKDYGGD +++G+
Sbjct:   124 EAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGE 183

Query:   178 VI 179
             +I
Sbjct:   184 II 185

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 79/186 (42%), Positives = 109/186 (58%)

Query:     4 LAARRTVASIITRTLTSPRSRLAIPILNKQQPQIGPDPICNP----ARFKTSGSSYSPLN 59
             LAA  T AS   R   S  SR A P+     P   P  +  P    A F++S ++ +   
Sbjct:    11 LAAASTSASPFLRPAASA-SRSA-PLAAAPLPP--PHQVSRPWLPAAGFRSSAAASAAAR 66

Query:    60 DPSPNWSNRPPK---ETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSE 116
                    +   K   + I+ +GCDY HWLI MEFP+P   + EEMI  Y++TLA VVGS 
Sbjct:    67 GDDYGRRDVDEKISPDEILFEGCDYNHWLITMEFPDPKP-TREEMIETYLQTLAKVVGSY 125

Query:   117 EEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDG 176
             EEAKK++Y+  TTTY GF A++ EE+S K +G PGV+++LPDSY+    K+YGGD + +G
Sbjct:   126 EEAKKRMYAFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENG 185

Query:   177 KVIHRP 182
              +  RP
Sbjct:   186 VITPRP 191

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 57/114 (50%), Positives = 81/114 (71%)

Query:    71 KETIMLDGCDYQHWLIVMEFPNP-SELSEEEMINAYVKTLAAVVG-SEEEAKKKIYSVCT 128
             ++T++ +GCDY HWLI M+F    +  S EEM+ AY +T A  +G S EEAK+++Y+  T
Sbjct:    77 EDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYACST 136

Query:   129 TTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVIHRP 182
             TTY GF A++ E+ S K K  PGV+++LPDSYID  NK+YGGD + +G + HRP
Sbjct:   137 TTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVITHRP 190

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 62/141 (43%), Positives = 81/141 (57%)

Query:    44 NPAR-FKTSGSSYSPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMI 102
             +PAR F T+   Y P        S  P  E     GCD+ HWLI M FP  +  S EEMI
Sbjct:    52 SPARLFSTTQYQYDPYTGED---SFMPDNE-----GCDFNHWLITMNFPKDNLPSREEMI 103

Query:   103 NAYVKTLAAVVG-SEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI 161
             + + +T A  +  S EEAKKKIY++CTT+Y GF A +      K +  PGV +++PDSYI
Sbjct:   104 SIFEQTCAKGLAISLEEAKKKIYAICTTSYQGFQATMTIGEVEKFRDLPGVQYIIPDSYI 163

Query:   162 DVPNKDYGGDLFVDGKVIHRP 182
             DV NK YGGD + +G +   P
Sbjct:   164 DVENKVYGGDKYENGVITPGP 184

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 62/136 (45%), Positives = 89/136 (65%)

Query:    51 SGSSYSPLNDPSPNWSN--RPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKT 108
             SG+S S +N  + +WS   R P    +++GCDY+HWL++M+ PN    +   ++ ++V+T
Sbjct:    26 SGNSGS-INSETTSWSELIRVPS---LVEGCDYKHWLVLMKPPNGYP-TRNHIVQSFVET 80

Query:   109 LAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI-DVPNKD 167
             LA  +GSEEEAK+ IYSV T  Y  FG  I E L+YK++  P V WVLPDS+I D  N+ 
Sbjct:    81 LAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNR- 139

Query:   168 YG----GDLFVDGKVI 179
             YG    G+ FVDG+V+
Sbjct:   140 YGVFFAGEPFVDGEVV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033046001 SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_64, whole genome shotgun sequence); (260 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	99.46

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.46  E-value=8.5e-14  Score=101.78  Aligned_cols=78  Identities=21%  Similarity=0.331  Sum_probs=55.3

Q ss_pred             eEEEEecCCCCCCCChHHHHHHHHHHHHHhhCC----hhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCC
Q 025802           83 HWLIVMEFPNPSELSEEEMINAYVKTLAAVVGS----EEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPD  158 (248)
Q Consensus        83 tYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgS----ee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPD  158 (248)
                      +|||.|..+..    .....++|.+|+.+++.+    .......++|+|+.+|+||+|+||++++++|+++|+|.+|.||
T Consensus         1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D   76 (82)
T PF05922_consen    1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD   76 (82)
T ss_dssp             EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred             CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence            59999997642    122345555555544332    1234567999999999999999999999999999999999999


Q ss_pred             CCcCCC
Q 025802          159 SYIDVP  164 (248)
Q Consensus       159 s~~qLH  164 (248)
                      ..++||
T Consensus        77 ~~v~l~   82 (82)
T PF05922_consen   77 QVVSLH   82 (82)
T ss_dssp             CEEEE-
T ss_pred             ceEecC
Confidence            999886

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.51
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	99.17
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	99.11
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.29
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	97.79
3t41_A	471	Epidermin leader peptide processing serine protea;	96.88
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	96.23
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	95.45
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	95.29

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.51  E-value=1.6e-14  Score=114.49  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=63.3

Q ss_pred             ceeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCC
Q 025802           81 YQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSY  160 (248)
Q Consensus        81 ~ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~  160 (248)
                      .+.|||+|.....     +.....|++||.+++++ +.+...|+|+|+++|+||+|+||++++++|+++|+|+.|.||+.
T Consensus        37 p~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~  110 (114)
T 2w2n_P           37 PGTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS  110 (114)
T ss_dssp             EEEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred             CCcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence            3789999985431     34566788899888753 22456799999999999999999999999999999999999997


Q ss_pred             cCC
Q 025802          161 IDV  163 (248)
Q Consensus       161 ~qL  163 (248)
                      +++
T Consensus       111 v~~  113 (114)
T 2w2n_P          111 VFA  113 (114)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            654

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=99.17  E-value=6e-11  Score=86.95  Aligned_cols=72  Identities=11%  Similarity=0.078  Sum_probs=55.1

Q ss_pred             ceeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCC
Q 025802           81 YQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSY  160 (248)
Q Consensus        81 ~ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~  160 (248)
                      .+.|||.+.....  .  ...   +.. +...      ...+++|+|++ |+||+|+|+++++++|+++|+|..|.||..
T Consensus         8 ~~~YIV~~k~~~~--~--~~~---~~~-~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~   72 (80)
T 3cnq_P            8 EKKYIVGFKQGFK--S--CAK---KED-VISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL   72 (80)
T ss_dssp             CCEEEEEECTTCC--S--HHH---HHH-HHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred             CCCEEEEECCCCC--h--HHH---HHH-HHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence            3689999975432  1  111   112 2221      23479999998 999999999999999999999999999999


Q ss_pred             cCCCCCC
Q 025802          161 IDVPNKD  167 (248)
Q Consensus       161 ~qLHTkd  167 (248)
                      ++++|+.
T Consensus        73 v~~~tt~   79 (80)
T 3cnq_P           73 YRALSAT   79 (80)
T ss_dssp             EEECCC-
T ss_pred             EEEeeec
Confidence            9999874

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=99.11  E-value=1.4e-10  Score=93.57  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             eeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCCc
Q 025802           82 QHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI  161 (248)
Q Consensus        82 ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~~  161 (248)
                      ..|||.|.....     ...+..|.+++.+++.. ......|+|+|++.|+||+|+|+++++++|+++|+|..|.||..+
T Consensus        48 ~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v  121 (124)
T 2qtw_A           48 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  121 (124)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CCEEEEECCCCC-----HHHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence            789999975431     23445555666553210 001247999999999999999999999999999999999999876


Q ss_pred             CC
Q 025802          162 DV  163 (248)
Q Consensus       162 qL  163 (248)
                      +.
T Consensus       122 ~a  123 (124)
T 2qtw_A          122 FA  123 (124)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.29  E-value=2.8e-06  Score=62.45  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             eeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEe-cCcceeeeeecCHHHHHHhhCC--CCeEEEeCC
Q 025802           82 QHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVC-TTTYTGFGALIDEELSYKVKGQ--PGVLWVLPD  158 (248)
Q Consensus        82 ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSY-t~afnGFAArLTeEEAekLk~l--PGVVSVfPD  158 (248)
                      ..|||.+....     ....++.|.+|+...-       ..+.|+| .+.|+||+|.|++++++.|+..  |.|..|=+|
T Consensus         3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D   70 (76)
T 1v5i_B            3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (76)
T ss_dssp             EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ceEEEEECCCC-----CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence            57999986421     1345666777765532       3588999 4899999999999999999999  889999999


Q ss_pred             CCcCC
Q 025802          159 SYIDV  163 (248)
Q Consensus       159 s~~qL  163 (248)
                      +...+
T Consensus        71 ~~v~~   75 (76)
T 1v5i_B           71 HVAHA   75 (76)
T ss_dssp             CEEEC
T ss_pred             cEEeC
Confidence            87653

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=97.79  E-value=2.3e-05  Score=78.81  Aligned_cols=80  Identities=16%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             eeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCCc
Q 025802           82 QHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI  161 (248)
Q Consensus        82 ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~~  161 (248)
                      ..|||.+.....     ....+.+.++|...+.. .....+++|+|++.|+||+++|+++++++|+++|+|..|.||..+
T Consensus        76 g~YIV~lk~~~~-----~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v  149 (692)
T 2p4e_P           76 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV  149 (692)
T ss_dssp             EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred             CcEEEEECCCCC-----HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccc
Confidence            489999975432     22233344444432210 001246899999999999999999999999999999999999977


Q ss_pred             CCCCCC
Q 025802          162 DVPNKD  167 (248)
Q Consensus       162 qLHTkd  167 (248)
                      .+.+..
T Consensus       150 ~~~~~p  155 (692)
T 2p4e_P          150 FAQSIP  155 (692)
T ss_dssp             EEC---
T ss_pred             ccCCCC
Confidence            654433

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=96.88  E-value=0.0024  Score=59.40  Aligned_cols=77  Identities=4%  Similarity=0.065  Sum_probs=50.9

Q ss_pred             CcceeecCCCceeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhC-C
Q 025802           71 KETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKG-Q  149 (248)
Q Consensus        71 ~~t~l~~gcd~ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~-l  149 (248)
                      .+.+.+.+.+.+.|||.+...       .    ...+++.       ...-+++|.|. .|+||+++|+++++++|++ +
T Consensus        34 ~~~l~~~~~~~~~yiv~~~~~-------~----~~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~   94 (471)
T 3t41_A           34 HENLYFQGSEELYYSVEYKNT-------A----TFNKLVK-------KKSLNVVYNIP-ELHVAQIKMTKMHANALANYK   94 (471)
T ss_dssp             ---------CCEEEEEEESCH-------H----HHHHHHH-------HHTCEEEEEEG-GGTEEEEEECHHHHHHHHTCT
T ss_pred             cccceecCCCceEEEEEcCCH-------H----HHHHHHH-------hCCCEEEEecC-CccEEEEEeCHHHHHHHHhcC
Confidence            355666677778899964421       1    1122222       22345789995 4999999999999999999 9


Q ss_pred             CCeEEEeCCCCcCCCCC
Q 025802          150 PGVLWVLPDSYIDVPNK  166 (248)
Q Consensus       150 PGVVSVfPDs~~qLHTk  166 (248)
                      |+|.+|.||..+.++++
T Consensus        95 p~V~~v~~~~~~~~~~~  111 (471)
T 3t41_A           95 NDIKYINATCSTCITSE  111 (471)
T ss_dssp             TTEEEEEECCSSCBCCC
T ss_pred             CCCcEEEecceeccccc
Confidence            99999999999888764

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=96.23  E-value=0.0079  Score=58.05  Aligned_cols=44  Identities=16%  Similarity=0.119  Sum_probs=39.2

Q ss_pred             cceeEEecCcceeeeeecCHHHHHHh-----------hCCCCeEEEeCCCCcCCCC
Q 025802          121 KKIYSVCTTTYTGFGALIDEELSYKV-----------KGQPGVLWVLPDSYIDVPN  165 (248)
Q Consensus       121 ~~ILYSYt~afnGFAArLTeEEAekL-----------k~lPGVVSVfPDs~~qLHT  165 (248)
                      .+++|+|+ .|+||+++|+++++++|           +++|+|..|.||..+++..
T Consensus        60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~  114 (539)
T 3afg_A           60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV  114 (539)
T ss_dssp             CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred             CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence            46899996 79999999999999999           8999999999999887754

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=95.45  E-value=0.0076  Score=55.25  Aligned_cols=44  Identities=18%  Similarity=0.003  Sum_probs=40.2

Q ss_pred             cceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCCcCCCC
Q 025802          121 KKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPN  165 (248)
Q Consensus       121 ~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~~qLHT  165 (248)
                      .++++.|.. |+||+++|+++++++|+++|+|..|.||..+++++
T Consensus        24 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~   67 (395)
T 2z2z_A           24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG   67 (395)
T ss_dssp             CEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred             CEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence            468999975 99999999999999999999999999999887764

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=95.29  E-value=0.018  Score=40.88  Aligned_cols=42  Identities=19%  Similarity=0.012  Sum_probs=37.5

Q ss_pred             hhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCCc
Q 025802          119 AKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI  161 (248)
Q Consensus       119 Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~~  161 (248)
                      ...+++|.|. .+++++|.|+++.+++|++.|||..|-+|...
T Consensus        21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v   62 (65)
T 2z30_B           21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA   62 (65)
T ss_dssp             GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred             CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence            3567999995 69999999999999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.25
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.2

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.9e-06  Score=61.52  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             eeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEecCcceeeeeecCHHHHHHhhCCCCeEEEeCCCCc
Q 025802           82 QHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYI  161 (248)
Q Consensus        82 ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt~afnGFAArLTeEEAekLk~lPGVVSVfPDs~~  161 (248)
                      +.|||.+.......     ....+.+++.+       ...++.+.|+ .|+||+|.|++++++.|+..|+|..|=+|...
T Consensus         2 ~~YIV~fK~~~~~~-----~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~   68 (71)
T d1scjb_           2 KKYIVGFKQTMSAM-----SSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIA   68 (71)
T ss_dssp             EEEEEEECSSSSCC-----SHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEE
T ss_pred             CcEEEEECCCCChH-----HHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEE
Confidence            67999988543211     12223333322       2346899997 69999999999999999999999999999876


Q ss_pred             CC
Q 025802          162 DV  163 (248)
Q Consensus       162 qL  163 (248)
                      +.
T Consensus        69 ~a   70 (71)
T d1scjb_          69 HE   70 (71)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.20  E-value=2e-06  Score=61.37  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             eeEEEEecCCCCCCCChHHHHHHHHHHHHHhhCChhhhhcceeEEec-CcceeeeeecCHHHHHHhhCCCC--eEEEeCC
Q 025802           82 QHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCT-TTYTGFGALIDEELSYKVKGQPG--VLWVLPD  158 (248)
Q Consensus        82 ktYIV~M~~p~~p~~s~~~~~~sh~s~LaSVLgSee~Ak~~ILYSYt-~afnGFAArLTeEEAekLk~lPG--VVSVfPD  158 (248)
                      .-|||.|....    + ...++.+..++...       ...+.|.|. ++|+||+|+|++++++.|+.+|+  |..|=+|
T Consensus         3 G~YIVvlK~~~----~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D   70 (72)
T d1v5ib1           3 GKFIVIFKNDV----S-EDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED   70 (72)
T ss_dssp             EEEEEEECTTC----C-HHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred             ccEEEEECCCC----C-HHHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence            46999998532    1 34455666666543       234667777 79999999999999999999776  9888777


Q ss_pred             C
Q 025802          159 S  159 (248)
Q Consensus       159 s  159 (248)
                      .
T Consensus        71 ~   71 (72)
T d1v5ib1          71 H   71 (72)
T ss_dssp             C
T ss_pred             C
Confidence            5