Citrus Sinensis ID: 025806

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGIS
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccEEEEEEcccEEcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccEEEEEEEEEccEEEEEEEccccEEEEEccEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccHHHHHHHHHccccccccccc
ccHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccEEEEEcEEccccccccccccccEEEEEcccccEEEEEcccccHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEccccEEEEEccEEEEEccccEccccccEEEccccccccHHHccEEEEEEccccEEEEEcccccccccHHHHHHHHHHHccccHHHcc
MVVPVFRasvasfhplfdslctrlstnsslpknsrllpfasselnpvqsrpelsfcvgthliphpnkverggedafFVSCYNGGVIAVADgvsgwaeqnvdpslfsRELMANASYFvedvevnydpqilmrkahaatssVGSATVIVAMLERNGILKVASVGDCGLRIIRkgqitfssspqehyfdcpyqlsseAVGQTYLDAMVTTVELIegdtivmgsdglfdnvfdHEVVSMTTRFIDVSEAGIS
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTrfidvseagis
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGIS
****VFRASVASFHPLFDSLCTRL****************************LSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDV******
*****************************************************SFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDV******
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGIS
**V**F*****SF*P**********************************RPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDV******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
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MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query248 2.2.26 [Sep-21-2011]
O64730298 Probable protein phosphat yes no 0.943 0.785 0.625 2e-83
Q942P9331 Probable protein phosphat yes no 0.814 0.610 0.679 5e-81
Q9SUK9467 Probable protein phosphat no no 0.729 0.387 0.391 8e-32
Q9LVQ8414 Probable protein phosphat no no 0.733 0.439 0.380 3e-30
Q339D2465 Probable protein phosphat no no 0.850 0.453 0.340 4e-29
Q10QL5569 Probable protein phosphat no no 0.754 0.328 0.353 3e-26
Q6J2K6569 Probable protein phosphat N/A no 0.754 0.328 0.353 4e-26
Q93V88724 Probable protein phosphat no no 0.665 0.227 0.358 8e-23
B4JYN1307 Protein phosphatase PTC7 N/A no 0.689 0.557 0.342 3e-22
B4NBL6315 Protein phosphatase PTC7 N/A no 0.745 0.587 0.33 4e-19
>sp|O64730|P2C26_ARATH Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170 PE=2 SV=2 Back     alignment and function desciption
 Score =  308 bits (789), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/248 (62%), Positives = 185/248 (74%), Gaps = 14/248 (5%)

Query: 1   MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSR---LLPFASSELNPVQSRPELSFCV 57
           M +PV R  V    P         S   S P  SR   L   A SE+ P+  RPELS  V
Sbjct: 1   MAIPVTRMMVPHAIP---------SLRLSHPNPSRVDFLCRCAPSEIQPL--RPELSLSV 49

Query: 58  GTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV 117
           G H IPHP+KVE+GGEDAFFVS Y GGV+AVADGVSGWAEQ+VDPSLFS+ELMANAS  V
Sbjct: 50  GIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMANASRLV 109

Query: 118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFS 177
           +D EV YDP  L+ KAH AT+S GSAT+I+AMLE  GILK+ +VGDCGL+++R+GQI F+
Sbjct: 110 DDQEVRYDPGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLREGQIIFA 169

Query: 178 SSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTT 237
           ++PQEHYFDCPYQLSSE   QTYLDA  + VE+ +GD IVMGSDGLFDNVFDHE+VS+ T
Sbjct: 170 TAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHEIVSIVT 229

Query: 238 RFIDVSEA 245
           +  DV+E+
Sbjct: 230 KHTDVAES 237

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q942P9|P2C01_ORYSJ Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica GN=Os01g0164600 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUK9|P2C55_ARATH Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVQ8|P2C80_ARATH Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1 Back     alignment and function description
>sp|Q339D2|P2C71_ORYSJ Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1 Back     alignment and function description
>sp|Q10QL5|BIP2C_ORYSJ Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica GN=BIPP2C1 PE=2 SV=1 Back     alignment and function description
>sp|Q6J2K6|BIP2C_ORYSI Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. indica GN=BIPP2C1 PE=2 SV=1 Back     alignment and function description
>sp|Q93V88|P2C62_ARATH Probable protein phosphatase 2C 62 OS=Arabidopsis thaliana GN=At4g33500 PE=2 SV=1 Back     alignment and function description
>sp|B4JYN1|PTC71_DROGR Protein phosphatase PTC7 homolog fig OS=Drosophila grimshawi GN=fig PE=3 SV=1 Back     alignment and function description
>sp|B4NBL6|PTC71_DROWI Protein phosphatase PTC7 homolog fig OS=Drosophila willistoni GN=fig PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
225434453311 PREDICTED: probable protein phosphatase 0.943 0.752 0.698 2e-96
255550609323 protein phosphatase 2c, putative [Ricinu 0.947 0.727 0.726 1e-93
224059873331 predicted protein [Populus trichocarpa] 0.967 0.725 0.723 3e-92
356565976306 PREDICTED: probable protein phosphatase 0.983 0.797 0.693 1e-91
357458041309 hypothetical protein MTR_3g031360 [Medic 0.979 0.786 0.681 2e-88
217074526309 unknown [Medicago truncatula] gi|3884943 0.979 0.786 0.673 4e-87
449454999313 PREDICTED: probable protein phosphatase 0.979 0.776 0.645 1e-84
449514561313 PREDICTED: LOW QUALITY PROTEIN: probable 0.979 0.776 0.645 1e-84
18402284298 putative protein phosphatase 2C 26 [Arab 0.943 0.785 0.625 1e-81
297826411301 hypothetical protein ARALYDRAFT_481929 [ 0.947 0.780 0.621 3e-80
>gi|225434453|ref|XP_002273518.1| PREDICTED: probable protein phosphatase 2C 26 [Vitis vinifera] gi|297745823|emb|CBI15879.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/249 (69%), Positives = 206/249 (82%), Gaps = 15/249 (6%)

Query: 1   MVVPVFRASVASFHPLFDSL--CTRLSTNSSLPKNSRLL--------PFASSELNPVQSR 50
           M +P+ +A+++  H  F+SL   TRL    S+PK  RL+          A SE+NP++S 
Sbjct: 1   MAIPILKAAISDSHEFFNSLSHTTRLL---SIPKKRRLIVSASASASASAPSEINPLRS- 56

Query: 51  PELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELM 110
            E+SFCVGTHLIPHPNKV+RGGEDAFFVS YNGGV+AVADGVSGWAEQNVDPSLF +ELM
Sbjct: 57  -EVSFCVGTHLIPHPNKVDRGGEDAFFVSSYNGGVVAVADGVSGWAEQNVDPSLFPKELM 115

Query: 111 ANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIR 170
           ANAS  V D EVNYDPQIL++KAH ATSS GSATVIVAMLE+NG+LK+ASVGDCGLR+IR
Sbjct: 116 ANASDLVGDEEVNYDPQILLKKAHTATSSKGSATVIVAMLEKNGVLKIASVGDCGLRVIR 175

Query: 171 KGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDH 230
           KG++ FS+ PQEHYFDCPYQLSSE + QTYLDA VT+V+L+EGDTIVMGSDGLFDNVFDH
Sbjct: 176 KGKLIFSTLPQEHYFDCPYQLSSEVITQTYLDATVTSVKLLEGDTIVMGSDGLFDNVFDH 235

Query: 231 EVVSMTTRF 239
           E+VS  T++
Sbjct: 236 EIVSTITQY 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550609|ref|XP_002516354.1| protein phosphatase 2c, putative [Ricinus communis] gi|223544520|gb|EEF46038.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224059873|ref|XP_002300005.1| predicted protein [Populus trichocarpa] gi|222847263|gb|EEE84810.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356565976|ref|XP_003551211.1| PREDICTED: probable protein phosphatase 2C 26-like [Glycine max] Back     alignment and taxonomy information
>gi|357458041|ref|XP_003599301.1| hypothetical protein MTR_3g031360 [Medicago truncatula] gi|355488349|gb|AES69552.1| hypothetical protein MTR_3g031360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074526|gb|ACJ85623.1| unknown [Medicago truncatula] gi|388494320|gb|AFK35226.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449454999|ref|XP_004145241.1| PREDICTED: probable protein phosphatase 2C 26-like [Cucumis sativus] gi|449471618|ref|XP_004153362.1| PREDICTED: probable protein phosphatase 2C 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514561|ref|XP_004164411.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18402284|ref|NP_565696.1| putative protein phosphatase 2C 26 [Arabidopsis thaliana] gi|75099170|sp|O64730.2|P2C26_ARATH RecName: Full=Probable protein phosphatase 2C 26; Short=AtPP2C26 gi|13878071|gb|AAK44113.1|AF370298_1 unknown protein [Arabidopsis thaliana] gi|17104663|gb|AAL34220.1| unknown protein [Arabidopsis thaliana] gi|20197099|gb|AAC16955.2| expressed protein [Arabidopsis thaliana] gi|330253260|gb|AEC08354.1| putative protein phosphatase 2C 26 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297826411|ref|XP_002881088.1| hypothetical protein ARALYDRAFT_481929 [Arabidopsis lyrata subsp. lyrata] gi|297326927|gb|EFH57347.1| hypothetical protein ARALYDRAFT_481929 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
TAIR|locus:2060822298 PBCP "PHOTOSYSTEM II CORE PHOS 0.943 0.785 0.637 3.5e-75
TAIR|locus:2130834467 AT4G16580 [Arabidopsis thalian 0.907 0.481 0.351 1.8e-32
DICTYBASE|DDB_G0280067516 DDB_G0280067 "protein phosphat 0.729 0.350 0.370 9.7e-32
TAIR|locus:2173679414 AT5G66720 [Arabidopsis thalian 0.745 0.446 0.370 3e-30
ASPGD|ASPL0000047324 450 AN1467 [Emericella nidulans (t 0.608 0.335 0.323 9.6e-25
TAIR|locus:2119246724 AT4G33500 [Arabidopsis thalian 0.822 0.281 0.342 6e-24
WB|WBGene00012362330 W09D10.4 [Caenorhabditis elega 0.879 0.660 0.315 3.4e-22
UNIPROTKB|B4JYN1307 fig "Protein phosphatase PTC7 0.673 0.543 0.351 4.3e-22
FB|FBgn0029949374 CG15035 [Drosophila melanogast 0.721 0.478 0.333 6.8e-20
MGI|MGI:2444593310 Pptc7 "PTC7 protein phosphatas 0.653 0.522 0.344 7.2e-20
TAIR|locus:2060822 PBCP "PHOTOSYSTEM II CORE PHOSPHATASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 158/248 (63%), Positives = 188/248 (75%)

Query:     1 MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSR---LLPFASSELNPVQSRPELSFCV 57
             M +PV R  V    P   SL  RLS     P  SR   L   A SE+ P+  RPELS  V
Sbjct:     1 MAIPVTRMMVPHAIP---SL--RLSH----PNPSRVDFLCRCAPSEIQPL--RPELSLSV 49

Query:    58 GTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV 117
             G H IPHP+KVE+GGEDAFFVS Y GGV+AVADGVSGWAEQ+VDPSLFS+ELMANAS  V
Sbjct:    50 GIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMANASRLV 109

Query:   118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFS 177
             +D EV YDP  L+ KAH AT+S GSAT+I+AMLE  GILK+ +VGDCGL+++R+GQI F+
Sbjct:   110 DDQEVRYDPGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLREGQIIFA 169

Query:   178 SSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTT 237
             ++PQEHYFDCPYQLSSE   QTYLDA  + VE+ +GD IVMGSDGLFDNVFDHE+VS+ T
Sbjct:   170 TAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHEIVSIVT 229

Query:   238 RFIDVSEA 245
             +  DV+E+
Sbjct:   230 KHTDVAES 237
GO:0003824 "catalytic activity" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=IMP
GO:0035970 "peptidyl-threonine dephosphorylation" evidence=IDA
GO:0071482 "cellular response to light stimulus" evidence=IMP
TAIR|locus:2130834 AT4G16580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280067 DDB_G0280067 "protein phosphatase 2C-related protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2173679 AT5G66720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000047324 AN1467 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2119246 AT4G33500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012362 W09D10.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|B4JYN1 fig "Protein phosphatase PTC7 homolog fig" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
FB|FBgn0029949 CG15035 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2444593 Pptc7 "PTC7 protein phosphatase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O64730P2C26_ARATH3, ., 1, ., 3, ., 1, 60.6250.94350.7852yesno
Q942P9P2C01_ORYSJ3, ., 1, ., 3, ., 1, 60.67980.81450.6102yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024014001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (309 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-13
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 3e-13
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 2e-10
smart00331193 smart00331, PP2C_SIG, Sigma factor PP2C-like phosp 0.001
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 37/218 (16%)

Query: 62  IPHPNKVERGGEDAFFV----SCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV 117
           +     V +  EDAF +    +     + AVADG+ G A   V   L    L   A  F 
Sbjct: 13  LSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEAL---ARLFD 69

Query: 118 EDVEVNYDPQI--------------LMRKAHAATSSVGSATVIVAMLERNGILKVASVGD 163
           E    + +  +              +  +        G  T +V +L R   L VA+VGD
Sbjct: 70  ETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGD 129

Query: 164 CGLRIIRKG---QITFSSSPQ-----------EHYFDCPYQLS-SEAVGQT-YLDAMVTT 207
               ++R G   Q+T   S             E     P + + + A+G    L+  +T 
Sbjct: 130 SRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGDFDLLEPDITE 189

Query: 208 VELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEA 245
           +EL  GD +++ SDGL+D V D E+V +        EA
Sbjct: 190 LELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEA 227

Length = 262
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
KOG1379330 consensus Serine/threonine protein phosphatase [Si 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
PTZ00224 381 protein phosphatase 2C; Provisional 99.97
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.95
KOG0698330 consensus Serine/threonine protein phosphatase [Si 99.93
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 99.93
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.91
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.87
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.86
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.7
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.7
KOG0699542 consensus Serine/threonine protein phosphatase [Si 99.65
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.44
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 98.72
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.15
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 96.85
PRK10693303 response regulator of RpoS; Provisional 89.21
PF0943672 DUF2016: Domain of unknown function (DUF2016); Int 80.21
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2e-37  Score=264.48  Aligned_cols=193  Identities=24%  Similarity=0.290  Sum_probs=157.4

Q ss_pred             EEEeEEEeccCCCCCCCCCceEEEeccCC----eEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc-----------
Q 025806           55 FCVGTHLIPHPNKVERGGEDAFFVSCYNG----GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-----------  119 (248)
Q Consensus        55 ~~~~~~~~s~~g~~r~~neD~~~~~~~~~----~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-----------  119 (248)
                      +....+..+++|.+|..|||++++..+..    .+|+|||||||+.++++||+++++.|.+.+.+....           
T Consensus         6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~   85 (262)
T COG0631           6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLK   85 (262)
T ss_pred             ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence            44556778999999999999999987433    399999999999999999999999999886542111           


Q ss_pred             ccccccHHHHHHHHHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCccccc--------------cc
Q 025806          120 VEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH--------------YF  185 (248)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~--------------~~  185 (248)
                      +.+...+..+...........++|||++++++.+++++++||||||+|++|+|++.++|.||..              ..
T Consensus        86 ~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~  165 (262)
T COG0631          86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR  165 (262)
T ss_pred             HHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH
Confidence            1223333344444443456689999999999999999999999999999999999999999942              12


Q ss_pred             CCcc--eeeeccCCccccceeeEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhcCCChhhhhc
Q 025806          186 DCPY--QLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGI  247 (248)
Q Consensus       186 ~~p~--~l~~~~~~~~~~~~~~~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~~~~~~aa~  247 (248)
                      .+|.  .+++.+|.....+|++...+++++|++|||||||||.++++++.++|+...+|+++++
T Consensus       166 ~~~~~~~ltralG~~~~~~p~~~~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~  229 (262)
T COG0631         166 SHPRRNALTRALGDFDLLEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAAD  229 (262)
T ss_pred             hCccchhhhhhcCCCcccceeEEEEEcCCCCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHH
Confidence            2454  3677777666699999999999999999999999999999999999998789999875

>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
2j82_A240 Structural Analysis Of The Pp2c Family Phosphatase 2e-04
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha From Thermosynechococcus Elongatus Length = 240 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 68  VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
           + +  +DAF++   +     VADG+ G A       L    +       +ED++  +DP 
Sbjct: 12  IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
            L+R+A     HA         A + +G+  V++ + E+      A VGD  +   RK Q
Sbjct: 70  TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 ITFSSSPQ--------------EHYFDCPYQ-LSSEAVGQTYLDAM-VTTVELIEGDTIV 217
           +   +S                E     P++ + S+ +G+  L  + +  ++L  GD ++
Sbjct: 130 LQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLL 189
Query: 218 MGSDGLFDNVFDHEVVSM 235
           + SDGL + + D +V+S+
Sbjct: 190 LCSDGLTEELTD-DVISI 206

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 6e-07
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 9e-06
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 1e-05
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 2e-05
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 2e-05
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 3e-05
1txo_A237 Putative bacterial enzyme; serine/threonine protei 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 1e-04
3rnr_A211 Stage II sporulation E family protein; structural 6e-04
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 46/196 (23%)

Query: 73  EDAFFVSCYNGGVIAVADGVSG------------------WAEQNVDPSLFSRELMANAS 114
           +DAF++   +     VADG+ G                        D       L+  A 
Sbjct: 17  QDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA- 75

Query: 115 YFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAML--ERNGILKVASVGDCGLRIIRKG 172
                   N     ++ +    ++     T  V +L  E+      A VGD  +   RK 
Sbjct: 76  --FL--AAN---HAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKD 128

Query: 173 ---QITFSSSPQEHYFDCPYQLSSE-------------AVG-QTYLDAMVTTVELIEGDT 215
              QIT   +           L+ E              +G +      +  ++L  GD 
Sbjct: 129 QLQQITSDHTWIAQAVQL-GSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDR 187

Query: 216 IVMGSDGLFDNVFDHE 231
           +++ SDGL + + D  
Sbjct: 188 LLLCSDGLTEELTDDV 203
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Length = 193 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.98
3rnr_A211 Stage II sporulation E family protein; structural 99.97
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 99.97
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 99.97
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.96
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.96
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.96
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.89
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.85
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.78
3f79_A255 Probable two-component response regulator; adaptor 99.73
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.36
3eq2_A394 Probable two-component response regulator; adaptor 99.07
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
Probab=100.00  E-value=1e-34  Score=244.82  Aligned_cols=188  Identities=18%  Similarity=0.215  Sum_probs=147.2

Q ss_pred             EEEeccCCCCCCCCCceEEEecc--CCeEEEEEcCCCCCCcccchHHHHHHHHHHHH-hhhh--hc-------ccccccH
Q 025806           59 THLIPHPNKVERGGEDAFFVSCY--NGGVIAVADGVSGWAEQNVDPSLFSRELMANA-SYFV--ED-------VEVNYDP  126 (248)
Q Consensus        59 ~~~~s~~g~~r~~neD~~~~~~~--~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~-~~~~--~~-------~~~~~~~  126 (248)
                      +...+++|++|+.|||++++...  +..+|+|||||||+..++++|+.+.+.+.+.+ ....  ..       ..+...+
T Consensus         8 ~~~~s~~G~~r~~neD~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (250)
T 2pk0_A            8 ISLLTDIGQRRSNNQDFINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETEN   87 (250)
T ss_dssp             EEEEEECCTTCSCCCEEEEEEECTTCCEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCcCCCceEeccCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            34457789889999999988764  35699999999999999999999998887333 2111  00       1122222


Q ss_pred             HHHHHHHHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcccccc--------------cCCcce--
Q 025806          127 QILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHY--------------FDCPYQ--  190 (248)
Q Consensus       127 ~~~~~~~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~--------------~~~p~~--  190 (248)
                      ..+.+...... ..++|||++++++.+++++++|+||||+|++|+|++.+||.||...              ..+|.+  
T Consensus        88 ~~l~~~~~~~~-~~~~gtT~~~~~i~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~  166 (250)
T 2pk0_A           88 RKIYELGQSDD-YKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNI  166 (250)
T ss_dssp             HHHHHHHHHTT-CTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSSCHHHHHTCCSCCC
T ss_pred             HHHHHHHhhCC-CCCCcceEEEEEEECCeEEEEEeCCCeEEEEcCCcEEEeCCCCCHHHHHHHcCCCCHHHHHhCCCcce
Confidence            23333332222 5678999999999999999999999999999999999999999641              134553  


Q ss_pred             eeeccCCccccceeeEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhcCCChhhhhc
Q 025806          191 LSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGI  247 (248)
Q Consensus       191 l~~~~~~~~~~~~~~~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~~~~~~aa~  247 (248)
                      +++.+|.....+|++..+++++||+||||||||||+++++++.+++.+..+++++|+
T Consensus       167 ltralG~~~~~~p~~~~~~l~~gd~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~  223 (250)
T 2pk0_A          167 ITQSIGQANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQ  223 (250)
T ss_dssp             BSCCBSCSSCCCCEEEEEECCTTCEEEEECHHHHTTSCHHHHHHHHTSSSCHHHHHH
T ss_pred             EEeecCCCCCccceEEEEEcCCCCEEEEECCCCCCCcCHHHHHHHHhcCCCHHHHHH
Confidence            677777666789999999999999999999999999999999999998779998875
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 6e-12
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.4 bits (148), Expect = 6e-12
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 25/185 (13%)

Query: 73  EDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE-------DVEVNYD 125
           ED+ +       ++A+ADG+ G A   V   L    L                D  V   
Sbjct: 19  EDSVYA---GARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAG 75

Query: 126 PQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF 185
              +  +        G  T + A+L     L +  +GD    ++R G++T  +       
Sbjct: 76  NSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQ 135

Query: 186 DCPYQ---------------LSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDH 230
               +               L   A+    ++  +T  E   GD  ++ SDGL D V D 
Sbjct: 136 TLVDEGRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDE 195

Query: 231 EVVSM 235
            ++  
Sbjct: 196 TILEA 200

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 99.98
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.1e-37  Score=257.26  Aligned_cols=187  Identities=21%  Similarity=0.258  Sum_probs=145.6

Q ss_pred             EeEEEeccCCCCCCCCCceEEEeccCCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc-------ccccccHHHH
Q 025806           57 VGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-------VEVNYDPQIL  129 (248)
Q Consensus        57 ~~~~~~s~~g~~r~~neD~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-------~~~~~~~~~~  129 (248)
                      +.++..|++|.+|+.|||++++..   .+|+|||||||+..+++||+.+.+.+.+.+......       ..+...+..+
T Consensus         3 ~~~~~~s~~G~~R~~nEDa~~~~~---~l~~V~DG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l   79 (235)
T d1txoa_           3 LRYAARSDRGLVRANNEDSVYAGA---RLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAI   79 (235)
T ss_dssp             EEEEEEEECCSSCSSCCEEEEECS---SEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCCccccCC---CEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHH
Confidence            344567899988999999999866   899999999999999998888877766533221100       1222333344


Q ss_pred             HHHHHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcccccc--------------cCCcce-eeec
Q 025806          130 MRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHY--------------FDCPYQ-LSSE  194 (248)
Q Consensus       130 ~~~~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~--------------~~~p~~-l~~~  194 (248)
                      .+.........++|||++++++.+++++++||||||+|++|+|++.++|.||...              ..+|.+ +.++
T Consensus        80 ~~~~~~~~~~~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~g~~~~~~~~~~~~~~~lt~  159 (235)
T d1txoa_          80 AAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMR  159 (235)
T ss_dssp             HHHHHHCGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECSCCCBHHHHHHHTTSSCTTGGGGCTTTTCBCC
T ss_pred             HHHhhcccccccceeeeeeeeeccceeEEEecCCccEEEecCCEEEEecCCCcHHHHhhhhcccchhhhhhccccchhhc
Confidence            4444455566788999999999999999999999999999999999999999531              123432 3344


Q ss_pred             cCCccccceeeEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhcCCChhhhhc
Q 025806          195 AVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGI  247 (248)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~~~~~~aa~  247 (248)
                      .+++...+|++..++++++|+||||||||||+++++++.+++.+ .+++++|+
T Consensus       160 ~~g~~~~~pdi~~~~l~~~D~llL~SDGl~d~l~~~ei~~i~~~-~~~~~~a~  211 (235)
T d1txoa_         160 ALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDETILEALQI-PEVAESAH  211 (235)
T ss_dssp             CBSSSCCCCEEEEEECCTTCEEEEECHHHHTTSCHHHHHHHHTS-SSHHHHHH
T ss_pred             ccccccccceEEEEecCCCCEEEEcCcchhcCCCHHHHHHHHhC-CCHHHHHH
Confidence            45566788999999999999999999999999999999999976 48999875
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure