Citrus Sinensis ID: 025809

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------

MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGRTYNGRQF

cHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHcccccccEEEEEEEEEEEEccccEEEEEccccccEEEEEEEEcccccEEEEEEEcccccEEEcccccccEEEEccccccccEEEEEEEccccEEEEccccccccccccEEEcccc

cHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccEcccccccccccccEEcccEEEEEEEEccccEEEEccccccccccccEcccccc

MDFLGIFLVASLSMLRTIHGyaggwssahatfygggdasgtmggacgygnlysqgygtsTAALSTALfnngvtcgacfeikcvndnrwclpgsiivtatnfcppnhalpnnaggwcnpplqhfdlsqpiFQHIAHYKAGIVPVQYRRVAcrksggirftinGHSYFNLVLITNVGGAGDVVSVSIkgsrtgwqpmsrnwgqnwqsnsylnGQALSFQvttsdgrsvisinvappnwsfgrtyngrqf

MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYgggdasgtmggacgYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGRTYNGRQF

**FLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR*******

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SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		247	2.2.26 [Sep-21-2011]
O80622		253	Expansin-A15 OS=Arabidops	yes	no	1.0	0.976	0.777	1e-113
Q9C554		250	Expansin-A1 OS=Arabidopsi	no	no	1.0	0.988	0.767	1e-110
Q9FMA0		255	Expansin-A14 OS=Arabidops	no	no	1.0	0.968	0.737	1e-107
Q9LDR9		249	Expansin-A10 OS=Arabidops	no	no	0.991	0.983	0.773	1e-104
Q0DHB7		246	Expansin-A4 OS=Oryza sati	yes	no	0.995	1.0	0.712	1e-102
A2Y5R6		246	Expansin-A4 OS=Oryza sati	N/A	no	0.995	1.0	0.712	1e-102
O22874		253	Expansin-A8 OS=Arabidopsi	no	no	0.979	0.956	0.732	1e-102
Q40636		251	Expansin-A2 OS=Oryza sati	no	no	0.987	0.972	0.704	1e-100
Q6ZGU9		291	Expansin-A5 OS=Oryza sati	no	no	0.910	0.773	0.746	5e-98
Q38864		255	Expansin-A5 OS=Arabidopsi	no	no	0.870	0.843	0.767	1e-96

>sp\|O80622\|EXP15_ARATH Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2	Back alignment and function desciption

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/247 (77%), Positives = 217/247 (87%)

Query: 1   MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTST 60
           M  LGI L    +M+ ++HGY  GW +AHATFYGG DASGTMGGACGYGNLYSQGYGT+T
Sbjct: 6   MGLLGIALFCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNT 65

Query: 61  AALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPL 120
           AALSTALFNNG++CGACFEIKC +D  WCLPG+IIVTATNFCPPN+ALPNNAGGWCNPPL
Sbjct: 66  AALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPL 125

Query: 121 QHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
            HFDLSQP+FQ IA YKAG+VPV YRRV C + GGIRFTINGHSYFNLVL+TNVGGAGDV
Sbjct: 126 HHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDV 185

Query: 181 VSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR 240
            SV++KGSRT WQ MSRNWGQNWQSN+ LNGQALSF+VT SDGR+V+S N+AP +WSFG+
Sbjct: 186 HSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQ 245

Query: 241 TYNGRQF 247
           T+ GRQF
Sbjct: 246 TFTGRQF 252

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9C554\|EXPA1_ARATH Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1	Back alignment and function description

>sp\|Q9FMA0\|EXP14_ARATH Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1	Back alignment and function description

>sp\|Q9LDR9\|EXP10_ARATH Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1	Back alignment and function description

>sp\|Q0DHB7\|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1	Back alignment and function description

>sp\|A2Y5R6\|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1	Back alignment and function description

>sp\|O22874\|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1	Back alignment and function description

>sp\|Q40636\|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2	Back alignment and function description

>sp\|Q6ZGU9\|EXPA5_ORYSJ Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1	Back alignment and function description

>sp\|Q38864\|EXPA5_ARATH Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		247
359478822		557	PREDICTED: uncharacterized protein LOC10	1.0	0.443	0.850	1e-126
147852565		247	hypothetical protein VITISV_024594 [Viti	1.0	1.0	0.850	1e-124
255568976		247	Alpha-expansin 15 precursor, putative [R	1.0	1.0	0.858	1e-123
224125904		242	hypothetical protein POPTRDRAFT_773840 [	0.979	1.0	0.854	1e-120
255564788		247	Alpha-expansin 1 precursor, putative [Ri	1.0	1.0	0.817	1e-117
224052849		247	hypothetical protein POPTRDRAFT_547568 [	1.0	1.0	0.817	1e-117
351630253		247	expansin [Breonia chinensis] gi\|35163028	0.995	0.995	0.809	1e-116
429326530		247	expansin protein [Populus tomentosa]	1.0	1.0	0.813	1e-116
21314553		248	alpha-expansin precursor [Gossypium hirs	1.0	0.995	0.789	1e-115
351630251		246	expansin [Breonia chinensis] gi\|35163028	0.991	0.995	0.805	1e-114

>gi\|359478822\|ref\|XP_002285773.2\| PREDICTED: uncharacterized protein LOC100267326 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/247 (85%), Positives = 233/247 (94%)

Query: 1   MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTST 60
           MDFLG  +VA L+ L+++ G+ GGWS+AHATFYGGGDASGTMGGACGYGNLYSQGYGT+T
Sbjct: 311 MDFLGYIIVALLTGLKSVEGFGGGWSNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 370

Query: 61  AALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPL 120
           AALSTALFNNG++CGAC+E+KCVND RWCLPGSI VTATNFCPPN+AL NNAGGWCNPPL
Sbjct: 371 AALSTALFNNGLSCGACYEVKCVNDKRWCLPGSITVTATNFCPPNNALTNNAGGWCNPPL 430

Query: 121 QHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
           QHFDLSQP+FQHIA YKAGIVPVQYRRVAC+K+GGIRFT+NGHSYFNLVLITNVGGAGDV
Sbjct: 431 QHFDLSQPVFQHIAQYKAGIVPVQYRRVACKKTGGIRFTVNGHSYFNLVLITNVGGAGDV 490

Query: 181 VSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR 240
           VSVSIKGS+T WQ MSRNWGQNWQSN+YLNGQALSF+VTTSDGRSV+S NVAPPNW FG+
Sbjct: 491 VSVSIKGSKTSWQAMSRNWGQNWQSNTYLNGQALSFKVTTSDGRSVVSNNVAPPNWDFGQ 550

Query: 241 TYNGRQF 247
           T+NGRQF
Sbjct: 551 TFNGRQF 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147852565\|emb\|CAN82746.1\| hypothetical protein VITISV_024594 [Vitis vinifera] gi\|297746516\|emb\|CBI16572.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255568976\|ref\|XP_002525458.1\| Alpha-expansin 15 precursor, putative [Ricinus communis] gi\|223535271\|gb\|EEF36948.1\| Alpha-expansin 15 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224125904\|ref\|XP_002319704.1\| hypothetical protein POPTRDRAFT_773840 [Populus trichocarpa] gi\|222858080\|gb\|EEE95627.1\| hypothetical protein POPTRDRAFT_773840 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255564788\|ref\|XP_002523388.1\| Alpha-expansin 1 precursor, putative [Ricinus communis] gi\|223537338\|gb\|EEF38967.1\| Alpha-expansin 1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224052849\|ref\|XP_002297611.1\| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa] gi\|222844869\|gb\|EEE82416.1\| hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|351630253\|gb\|AEQ55281.1\| expansin [Breonia chinensis] gi\|351630283\|gb\|AEQ55296.1\| expansin [Breonia chinensis]	Back alignment and taxonomy information

>gi\|429326530\|gb\|AFZ78605.1\| expansin protein [Populus tomentosa]	Back alignment and taxonomy information

>gi\|21314553\|gb\|AAM47002.1\|AF512544_1 alpha-expansin precursor [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|351630251\|gb\|AEQ55280.1\| expansin [Breonia chinensis] gi\|351630281\|gb\|AEQ55295.1\| expansin [Breonia chinensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		247
TAIR\|locus:2056670		253	EXPA15 "expansin A15" [Arabido	1.0	0.976	0.724	5.4e-102
TAIR\|locus:2200625		259	EXPA10 "expansin A10" [Arabido	1.0	0.953	0.713	4.4e-100
TAIR\|locus:2007106		275	EXPA1 "expansin A1" [Arabidops	0.979	0.88	0.717	5.8e-98
TAIR\|locus:2161028		255	EXPA14 "expansin A14" [Arabido	1.0	0.968	0.685	2e-95
TAIR\|locus:2061918		253	EXPA8 "expansin A8" [Arabidops	0.979	0.956	0.679	1.7e-91
TAIR\|locus:2180182		258	EXPA9 "expansin A9" [Arabidops	0.991	0.949	0.626	9.9e-87
TAIR\|locus:2043240		257	EXPA4 "expansin A4" [Arabidops	0.975	0.937	0.647	1.3e-86
TAIR\|locus:2099991		260	EXPA16 "expansin A16" [Arabido	0.979	0.930	0.632	2e-86
TAIR\|locus:2087027		255	EXPA5 "expansin A5" [Arabidops	0.890	0.862	0.698	4.3e-86
TAIR\|locus:2153569		255	EXPA2 "expansin A2" [Arabidops	0.910	0.882	0.668	2.4e-85

TAIR\|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 179/247 (72%), Positives = 204/247 (82%)

Query:     1 MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTST 60
             M  LGI L    +M+ ++HGY  GW +AHATFY              YGNLYSQGYGT+T
Sbjct:     6 MGLLGIALFCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNT 65

Query:    61 AALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPL 120
             AALSTALFNNG++CGACFEIKC +D  WCLPG+IIVTATNFCPPN+ALPNNAGGWCNPPL
Sbjct:    66 AALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPL 125

Query:   121 QHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
              HFDLSQP+FQ IA YKAG+VPV YRRV C + GGIRFTINGHSYFNLVL+TNVGGAGDV
Sbjct:   126 HHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDV 185

Query:   181 VSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR 240
              SV++KGSRT WQ MSRNWGQNWQSN+ LNGQALSF+VT SDGR+V+S N+AP +WSFG+
Sbjct:   186 HSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQ 245

Query:   241 TYNGRQF 247
             T+ GRQF
Sbjct:   246 TFTGRQF 252

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR\|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087027 EXPA5 "expansin A5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80622	EXP15_ARATH	No assigned EC number	0.7773	1.0	0.9762	yes	no
Q38864	EXPA5_ARATH	No assigned EC number	0.7678	0.8704	0.8431	no	no
Q38866	EXPA2_ARATH	No assigned EC number	0.7256	0.9109	0.8823	no	no
O48818	EXPA4_ARATH	No assigned EC number	0.7008	0.9757	0.9377	no	no
A2Y5R6	EXPA4_ORYSI	No assigned EC number	0.7125	0.9959	1.0	N/A	no
O22874	EXPA8_ARATH	No assigned EC number	0.7325	0.9797	0.9565	no	no
Q9C554	EXPA1_ARATH	No assigned EC number	0.7670	1.0	0.988	no	no
Q40636	EXPA2_ORYSJ	No assigned EC number	0.7049	0.9878	0.9721	no	no
Q9FMA0	EXP14_ARATH	No assigned EC number	0.7370	1.0	0.9686	no	no
Q0DHB7	EXPA4_ORYSJ	No assigned EC number	0.7125	0.9959	1.0	yes	no
Q9LDR9	EXP10_ARATH	No assigned EC number	0.7732	0.9919	0.9839	no	no
Q852A1	EXPA7_ORYSJ	No assigned EC number	0.7130	0.9392	0.8787	no	no
Q4PNY1	EXP11_ORYSJ	No assigned EC number	0.7201	0.8785	0.875	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrEXPA11	hypothetical protein (242 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		247
PLN00050		247	PLN00050, PLN00050, expansin A; Provisional	1e-151
PLN00193		256	PLN00193, PLN00193, expansin-A; Provisional	1e-121
smart00837		87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	2e-52
pfam01357		82	pfam01357, Pollen_allerg_1, Pollen allergen	2e-37
pfam03330		77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	8e-26
PLN03023		247	PLN03023, PLN03023, Expansin-like B1; Provisional	3e-20
PLN03024		125	PLN03024, PLN03024, Putative EG45-like domain cont	3e-04

>gnl\|CDD\|165628 PLN00050, PLN00050, expansin A; Provisional	Back alignment and domain information

 Score =  419 bits (1079), Expect = e-151
 Identities = 206/247 (83%), Positives = 225/247 (91%)

Query: 1   MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTST 60
           M+ LG  +VA LS+L+ + GY  GW+ AHATFYGGGDASGTMGGACGYGNLYSQGYGT+T
Sbjct: 1   MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 60

Query: 61  AALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPL 120
           AALSTALFNNG++CGACFEIKCVNDN WCLPGSII+TATNFCPPN ALPNN GGWCNPP 
Sbjct: 61  AALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQ 120

Query: 121 QHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDV 180
           QHFDLSQP+FQ IA YKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGD+
Sbjct: 121 QHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180

Query: 181 VSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR 240
           V+VSIKGS++ WQ MSRNWGQNWQSNSYLNGQALSF+VTTSDGR+VIS N AP NW+FG+
Sbjct: 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240

Query: 241 TYNGRQF 247
           TY G QF
Sbjct: 241 TYTGMQF 247

Length = 247

>gnl\|CDD\|215097 PLN00193, PLN00193, expansin-A; Provisional	Back alignment and domain information

>gnl\|CDD\|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>gnl\|CDD\|216453 pfam01357, Pollen_allerg_1, Pollen allergen	Back alignment and domain information

>gnl\|CDD\|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>gnl\|CDD\|215542 PLN03023, PLN03023, Expansin-like B1; Provisional	Back alignment and domain information

>gnl\|CDD\|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		247
PLN00050		247	expansin A; Provisional	100.0
PLN00193		256	expansin-A; Provisional	100.0
PLN03023		247	Expansin-like B1; Provisional	100.0
COG4305		232	Endoglucanase C-terminal domain/subunit and relate	99.96
PLN03024		125	Putative EG45-like domain containing protein 1; Pr	99.95
smart00837		87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.94
PLN00115		118	pollen allergen group 3; Provisional	99.9
PF01357		82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.87
PF03330		78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.77
PF00967		119	Barwin: Barwin family; InterPro: IPR001153 Barwin	99.01
PF07249		119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.07
TIGR00413		208	rlpA rare lipoprotein A. This is a family of proka	97.84
COG0797		233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.27
PRK10672		361	rare lipoprotein A; Provisional	97.07
PF02015		201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	91.23

>PLN00050 expansin A; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.4e-72  Score=497.30  Aligned_cols=247  Identities=83%  Similarity=1.456  Sum_probs=235.2

Q ss_pred             CchHHHHHHHHHHHhhhcccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEE
Q 025809            1 MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEI   80 (247)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV   80 (247)
                      |+-|+--+|+||+.+--..+++.+|..++|||||++++.|+++|||||+++..++++.++||+|+++|++|++||+||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV   80 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI   80 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence            78899999999999888888888999999999999999999999999999888889999999999999999999999999


Q ss_pred             EEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeeecCCceeEEE
Q 025809           81 KCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTI  160 (247)
Q Consensus        81 ~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v  160 (247)
                      +|.+++.+|.+++|+|+|||+||++++.|+.+++||++++.|||||+.||.+||....|+|+|+||||||.++|||+|++
T Consensus        81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v  160 (247)
T PLN00050         81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI  160 (247)
T ss_pred             EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence            99876668998999999999999998889899999998899999999999999999999999999999999999999999


Q ss_pred             cCccceeEEEEEeecCCcceEEEEEEccCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCeEEEEccccCCCCCCCe
Q 025809          161 NGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR  240 (247)
Q Consensus       161 ~~~~yw~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~vv~~~vip~~w~~g~  240 (247)
                      ++++||++|+|.|++|+++|++|||++++++|++|+|+||++|+++.+|.+.||+||||+.+|+++++.||||++||+|.
T Consensus       161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~  240 (247)
T PLN00050        161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ  240 (247)
T ss_pred             cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence            99889999999999999999999999987789999999999999988777779999999999999999999999999999


Q ss_pred             EEeCCCC
Q 025809          241 TYNGRQF  247 (247)
Q Consensus       241 ~Y~~~~~  247 (247)
                      +|++.||
T Consensus       241 ty~~~~f  247 (247)
T PLN00050        241 TYTGMQF  247 (247)
T ss_pred             eEecCcC
Confidence            9999998

>PLN00193 expansin-A; Provisional	Back alignment and domain information

>PLN03023 Expansin-like B1; Provisional	Back alignment and domain information

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN03024 Putative EG45-like domain containing protein 1; Provisional	Back alignment and domain information

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>PLN00115 pollen allergen group 3; Provisional	Back alignment and domain information

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []	Back alignment and domain information

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures	Back alignment and domain information

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds	Back alignment and domain information

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family	Back alignment and domain information

>TIGR00413 rlpA rare lipoprotein A	Back alignment and domain information

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10672 rare lipoprotein A; Provisional	Back alignment and domain information

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		247
2hcz_X		245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		9e-16
1n10_A		241	Crystal Structure Of Phl P 1, A Major Timothy Grass		5e-13

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Back alignment and structure

Iteration: 1

Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 34/240 (14%) Query: 21 YAGGWSSAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTSTAALSTALFNNGVTCGACF 78 Y G W +A AT+Y G N+ Y TA + +F +G CG+C+ Sbjct: 15 YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74 Query: 79 EIKCVNDNRWCL--PGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH- 135 E++C + C P ++ +T N+ P P HFDLS F +A Sbjct: 75 EVRC-KEKPECSGNPVTVYITDMNYEP---IAP-----------YHFDLSGKAFGSLAKP 119 Query: 136 ------YKAGIVPVQYRRVACRKSGGIRFTINGHSYFN----LVLITNVGGAGDVVSVSI 185 GI+ V++RRV C+ G + + N VL+ V GD+V + I Sbjct: 120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 179 Query: 186 KGSRTG-WQPMSRNWGQNWQSNS--YLNGQALSFQVTTSDGRSVISINVAPPNWSFGRTY 242 + + W+PM +WG W+ ++ L G S ++T+ G+ VI+ +V P NW Y Sbjct: 180 QDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVY 238

PyMOL of 2hcz

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		247
2hcz_X		245	Beta-expansin 1A; domain 1 is A beta barrel and do	2e-72
1n10_A		241	PHL P I, pollen allergen PHL P 1; plant allergen,	4e-70
3d30_A		208	YOAJ, expansin like protein; peptidoglycan associa	2e-62
2jnz_A		108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	9e-32
1bmw_A		96	PHL P II, pollen allergen PHL P2; allergy, immunog	3e-31
3ft1_A		100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	1e-29
1wc2_A		181	Endoglucanase; hydrolase, cellulase, cellulose, do	3e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245	Back alignment and structure

 Score =  220 bits (561), Expect = 2e-72
 Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 31/246 (12%)

Query: 19  HGYAGGWSSAHATFYGGGDASGT--MGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGA 76
             Y G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+
Sbjct: 13  TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGS 72

Query: 77  CFEIKCVNDNRWCLPG-SIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH 135
           C+E++C           ++ +T  N+ P                  HFDLS   F  +A 
Sbjct: 73  CYEVRCKEKPECSGNPVTVYITDMNYEPIAP--------------YHFDLSGKAFGSLAK 118

Query: 136 -------YKAGIVPVQYRRVACRKSGGIRFTINGHSYFN----LVLITNVGGAGDVVSVS 184
                     GI+ V++RRV C+   G +   +     N     VL+  V   GD+V + 
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178

Query: 185 IKGSRTG-WQPMSRNWGQNWQSNSYLN-GQALSFQVTTSDGRSVISINVAPPNWSFGRTY 242
           I+   +  W+PM  +WG  W+ ++        S ++T+  G+ VI+ +V P NW     Y
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVY 238

Query: 243 NGR-QF 247
               QF
Sbjct: 239 TSNVQF 244

PyMOL of 2hcz

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241	Back alignment and structure

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208	Back alignment and structure

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108	Back alignment and structure

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96	Back alignment and structure

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100	Back alignment and structure

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		247
2hcz_X		245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A		241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A		208	YOAJ, expansin like protein; peptidoglycan associa	100.0
1wc2_A		181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.97
3ft1_A		100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.95
2jnz_A		108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.94
1bmw_A		96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.91
1bw3_A		125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.66
4avr_A		95	PA4485; unknown function, GRAM-negative bacteria,	99.23
2kqa_A		129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.04
3sul_A		122	Cerato-platanin-like protein; double PSI beta barr	97.96
3m3g_A		120	EPL1 protein; fungal, plant defense, fungus, polys	97.85
3suj_A		127	Cerato-platanin 1; double PSI beta barrel, unknown	97.81
3suk_A		125	Cerato-platanin-like protein; double PSI beta barr	97.8
3sum_A		136	Cerato-platanin-like protein; double PSI beta barr	97.68
2eng_A		210	Endoglucanase V; cellulose degradation, hydrolase	94.61

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=2.1e-64  Score=446.00  Aligned_cols=216  Identities=33%  Similarity=0.676  Sum_probs=199.5

Q ss_pred             cccCCCCeeEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCcccCCeEE
Q 025809           18 IHGYAGGWSSAHATFYGGGDASGT--MGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSII   95 (247)
Q Consensus        18 ~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~   95 (247)
                      ..++..+|+.|+||||+++++.|+  .+|||||+++..+|++.++||+|+++|++|+.||+||||+|.++ ..|.+++|+
T Consensus        12 ~~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~-~~C~~~sv~   90 (245)
T 2hcz_X           12 TTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEK-PECSGNPVT   90 (245)
T ss_dssp             CSCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSS-SSBCSSCEE
T ss_pred             CcccCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCC-CccCCCCEE
Confidence            345788999999999999988787  78999999987788899999999999999999999999999875 469889999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc-------ccCcccceeEEEeeeecC--CceeEEEc--Ccc
Q 025809           96 VTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH-------YKAGIVPVQYRRVACRKS--GGIRFTIN--GHS  164 (247)
Q Consensus        96 v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~--gni~~~v~--~~~  164 (247)
                      |+|||+||            |.++..|||||+.||.+||.       ++.|+|+|+||||+|+++  +||+|+++  +++
T Consensus        91 V~VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~  158 (245)
T 2hcz_X           91 VYITDMNY------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNP  158 (245)
T ss_dssp             EEEEEECC------------CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSS
T ss_pred             EEEEeccC------------CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCc
Confidence            99999998            44358999999999999999       689999999999999998  37999999  589


Q ss_pred             ceeEEEEEeecCCcceEEEEEEccC-CceeecCCCCCceEEeCCC--CCCcceEEEEEecCCeEEEEccccCCCCCCCeE
Q 025809          165 YFNLVLITNVGGAGDVVSVSIKGSR-TGWQPMSRNWGQNWQSNSY--LNGQALSFQVTTSDGRSVISINVAPPNWSFGRT  241 (247)
Q Consensus       165 yw~av~v~n~~g~~~I~sVeI~~~g-~~W~~m~r~~gn~W~~~~~--l~g~p~~vRvTs~~G~~vv~~~vip~~w~~g~~  241 (247)
                      ||++|||.|++|+++|++|||++++ ..|++|+|+|||+|+++.+  |.+ ||+||||+.+|++|+++||||++|++|.+
T Consensus       159 ~~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~t  237 (245)
T 2hcz_X          159 NYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAV  237 (245)
T ss_dssp             SCCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCCTTCE
T ss_pred             ceEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCCCCCE
Confidence            9999999999999999999999987 5899999999999998864  777 99999999999999999999999999999


Q ss_pred             EeCC-CC
Q 025809          242 YNGR-QF  247 (247)
Q Consensus       242 Y~~~-~~  247 (247)
                      |+++ ||
T Consensus       238 y~~~~qf  244 (245)
T 2hcz_X          238 YTSNVQF  244 (245)
T ss_dssp             EECSCCC
T ss_pred             EeCcccc
Confidence            9998 98

PyMOL of 2hcz

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3	Back alignment and structure

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A	Back alignment and structure

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1	Back alignment and structure

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A	Back alignment and structure

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}	Back alignment and structure

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A	Back alignment and structure

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A	Back alignment and structure

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}	Back alignment and structure

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}	Back alignment and structure

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}	Back alignment and structure

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}	Back alignment and structure

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}	Back alignment and structure

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}	Back alignment and structure

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}	Back alignment and structure

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		247
d1wc2a1		180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	2e-46
d1n10a2		143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	2e-45
d1n10a1		95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	9e-34
d1whoa_		94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	2e-28

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180	Back information, alignment and structure


class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  150 bits (380), Expect = 2e-46
 Identities = 35/173 (20%), Positives = 45/173 (26%), Gaps = 38/173 (21%)

Query: 23  GGWSSAHATFYGGGDASGTMGGACGYGNL-----YSQGYGTSTAALSTALFNN------G 71
            G S A  T Y          GACG G       +    G+  AA S   F++      G
Sbjct: 12  NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 72  VTCGACFEIKCVNDNRWCLPG------SIIVTATNFCPPNHALPNNAGGWCNPPLQ---- 121
             CG C ++           G      S     TN CP           WCN   Q    
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGH 122

Query: 122 -------HFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTINGHSYFN 167
                  H DL       +           +  V C            +S + 
Sbjct: 123 NKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMYG 174

PyMOL of d1wc2a1

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143	Back information, alignment and structure

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95	Back information, alignment and structure

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		247
d1n10a2		143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1		180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	100.0
d1n10a1		95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.95
d1whoa_		94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.93
d1bw3a_		125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.6
d2enga_		210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	92.3

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=5.2e-37  Score=248.98  Aligned_cols=124  Identities=34%  Similarity=0.639  Sum_probs=105.4

Q ss_pred             cccCCCCeeEEEEEEeCCCCCCCC--CccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCcccCCeEE
Q 025809           18 IHGYAGGWSSAHATFYGGGDASGT--MGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSII   95 (247)
Q Consensus        18 ~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~   95 (247)
                      +..|.++|++|+||||+.+++.++  .+|||||+++...|++.++||+|+.+|++|..||+||||+|.+ ++.|.+++|+
T Consensus        10 ~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~-~~~c~~~sv~   88 (143)
T d1n10a2          10 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK-PEACSGEPVV   88 (143)
T ss_dssp             CCBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS-STTBCSCCEE
T ss_pred             ccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC-CCcccCCCEE
Confidence            445889999999999998887654  3799999998878889999999999999999999999999987 4689889999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcc-------cCcccceeEEEeeeecCC
Q 025809           96 VTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHY-------KAGIVPVQYRRVACRKSG  154 (247)
Q Consensus        96 v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~r~V~C~~~g  154 (247)
                      |+|||.||+           |. +..|||||+.||.+||+.       +.|+|+|+||||+|.++|
T Consensus        89 V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          89 VHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999999996           33 468999999999999985       679999999999999986

PyMOL of d1n10a2

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}	Back information, alignment and structure

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}	Back information, alignment and structure