Citrus Sinensis ID: 025821


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRFVSN
ccccccccccccccccccHHHHHHHHHHHHHHHHHccEEEEEEEcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccEEEEEEEcccEEEEEEccccccccccccEEEEEccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccc
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEccccccEcccccccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccEEEEEEccHcHHHHHHHHccccHcccccEEEEEccccccccccHHHHHHHHHHcccEEcccccccccccEEEEEEEEccccEEEEEccc
mmkttnsisvlsdppsrscLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSmysakpetcknqqcrlpgtealpegivsktsnlemrplwsspsklnnqrppmNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFakrflhpdivAEYNYIFlwdedigvenfnprrylsivkdegleisqpaldpvksevhhpitarrrnskahrfvsn
mmkttnsisvlsdppsRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSspsklnnqrPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEisqpaldpvksevhhpitarrrnskahrfvsn
MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRFVSN
*****************SCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAK***********************************************NLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGL*********************************
**********************LFIAAALICSVYFIGSSFVAKENKERLMRWG*****************************IVSKTSNLE******************NLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRR**********
*************PPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS*********************
**************PSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVH********TC**QQCR*PGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRF***
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRFVSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
255575938 370 conserved hypothetical protein [Ricinus 0.975 0.651 0.661 2e-92
359486223 413 PREDICTED: uncharacterized protein LOC10 0.975 0.583 0.646 9e-88
356560121 385 PREDICTED: uncharacterized protein LOC10 0.975 0.625 0.635 6e-87
356541848 387 PREDICTED: uncharacterized protein LOC10 0.975 0.622 0.639 6e-85
92893672 355 Protein of unknown function DUF707 [Medi 0.971 0.676 0.634 3e-84
255543122 389 conserved hypothetical protein [Ricinus 0.963 0.611 0.622 1e-81
357445211 406 hypothetical protein MTR_2g005330 [Medic 0.971 0.591 0.603 2e-81
357445209 368 hypothetical protein MTR_2g005330 [Medic 0.971 0.652 0.603 2e-81
297735287 413 unnamed protein product [Vitis vinifera] 0.967 0.578 0.596 8e-81
449515369 402 PREDICTED: uncharacterized LOC101205845, 0.939 0.577 0.605 7e-80
>gi|255575938|ref|XP_002528866.1| conserved hypothetical protein [Ricinus communis] gi|223531717|gb|EEF33540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/242 (66%), Positives = 194/242 (80%), Gaps = 1/242 (0%)

Query: 2   MKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSA 61
           MK+    S   DP SRS LC+LF+ A+LICS YFIG SF+ KE KERL RW ++ ++ S 
Sbjct: 1   MKSLYCASASPDPKSRSYLCTLFVVASLICSAYFIGGSFIGKEYKERLARWQVIETVQST 60

Query: 62  KPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQK 121
           K   C++Q C+  GT+ALP+GIV KTS+ EMRPLW+S  + N Q+   +LLA+A GI QK
Sbjct: 61  KSTNCEDQ-CKPTGTKALPQGIVRKTSDFEMRPLWNSSLEDNKQKLSKSLLALAVGINQK 119

Query: 122 KIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDI 181
            +VDQIV+KFP  DFVVMLFHYDGVVD+W+DL W+D AIHVSA NQTKWWFAKRFLHPDI
Sbjct: 120 VVVDQIVKKFPLSDFVVMLFHYDGVVDKWRDLPWSDHAIHVSAVNQTKWWFAKRFLHPDI 179

Query: 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA 241
           V+EY+Y+FLWDED+GVENFNP+RYLSI++DEGLEISQPALDP KS V+HPITAR+  S  
Sbjct: 180 VSEYDYLFLWDEDLGVENFNPKRYLSIIRDEGLEISQPALDPTKSAVYHPITARQPKSTV 239

Query: 242 HR 243
           HR
Sbjct: 240 HR 241




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486223|ref|XP_002265374.2| PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera] gi|297739491|emb|CBI29673.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560121|ref|XP_003548344.1| PREDICTED: uncharacterized protein LOC100797710 [Glycine max] Back     alignment and taxonomy information
>gi|356541848|ref|XP_003539384.1| PREDICTED: uncharacterized protein LOC100526994 [Glycine max] Back     alignment and taxonomy information
>gi|92893672|gb|ABE91850.1| Protein of unknown function DUF707 [Medicago truncatula] gi|92893916|gb|ABE91966.1| Protein of unknown function DUF707 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255543122|ref|XP_002512624.1| conserved hypothetical protein [Ricinus communis] gi|223548585|gb|EEF50076.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357445211|ref|XP_003592883.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481931|gb|AES63134.1| hypothetical protein MTR_2g005330 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357445209|ref|XP_003592882.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481930|gb|AES63133.1| hypothetical protein MTR_2g005330 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297735287|emb|CBI17649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449515369|ref|XP_004164722.1| PREDICTED: uncharacterized LOC101205845, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2124608 389 AT4G18530 "AT4G18530" [Arabido 0.919 0.583 0.607 2.4e-76
TAIR|locus:2202124 438 AT1G11170 [Arabidopsis thalian 0.680 0.383 0.587 5.6e-52
TAIR|locus:2008425 425 AT1G61240 [Arabidopsis thalian 0.684 0.397 0.590 9.2e-52
TAIR|locus:2031905 401 AT1G13000 [Arabidopsis thalian 0.672 0.413 0.491 4e-42
TAIR|locus:504956279 381 AT1G24570 [Arabidopsis thalian 0.663 0.430 0.488 2.8e-41
TAIR|locus:2008640 404 AT1G67850 "AT1G67850" [Arabido 0.672 0.410 0.485 2.8e-41
TAIR|locus:2205140 382 AT1G08040 [Arabidopsis thalian 0.672 0.434 0.467 3.6e-41
TAIR|locus:2086721 398 AT3G27470 "AT3G27470" [Arabido 0.663 0.412 0.485 5.9e-41
TAIR|locus:2057557 374 AT2G28310 "AT2G28310" [Arabido 0.672 0.443 0.455 9.6e-41
TAIR|locus:2079291 396 AT3G26440 [Arabidopsis thalian 0.684 0.426 0.473 9.9e-39
TAIR|locus:2124608 AT4G18530 "AT4G18530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 144/237 (60%), Positives = 182/237 (76%)

Query:    16 SRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPE--------TCK 67
             +RSCLCS+ I  ALIC  YFI ++++AK+ KE+L++W +   M+++  +        TCK
Sbjct:     7 NRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCK 66

Query:    68 NQQCRLPGTEALPEGIVSKTSNLEMRPLWS-SPSKLNNQRPPMNLLAIAAGIKQKKIVDQ 126
             N   +  GTEALP+GI+ KTSNLE + LW+   +K       M+LLA+A GIKQK++V++
Sbjct:    67 NFN-KPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNK 125

Query:   127 IVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYN 186
             +++KFP +DF VMLFHYDGVVD+WK   W + AIHVS  NQTKWWFAKRFLHPDIVAEY 
Sbjct:   126 VIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYE 185

Query:   187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHR 243
             YIFLWDED+GV +FNP+RYLSIVK+EGLEISQPALD  KSEVHHPITARR+ SK HR
Sbjct:   186 YIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHR 242




GO:0008150 "biological_process" evidence=ND
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2202124 AT1G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008425 AT1G61240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031905 AT1G13000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956279 AT1G24570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008640 AT1G67850 "AT1G67850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205140 AT1G08040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086721 AT3G27470 "AT3G27470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057557 AT2G28310 "AT2G28310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079291 AT3G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00035311001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (411 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
pfam05212 294 pfam05212, DUF707, Protein of unknown function (DU 2e-86
>gnl|CDD|218501 pfam05212, DUF707, Protein of unknown function (DUF707) Back     alignment and domain information
 Score =  258 bits (660), Expect = 2e-86
 Identities = 92/174 (52%), Positives = 113/174 (64%), Gaps = 2/174 (1%)

Query: 70  QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVR 129
                G E LP GIV   S+  +R LW SP + +    P  LLA   G  QK  VD  V+
Sbjct: 4   PTNPRGAERLPPGIVVSESDFYLRRLWGSPEE-DVASKPKYLLAFTVGYSQKANVDACVK 62

Query: 130 KFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIF 189
           KF S +F ++LFHYDG   EW +L W+ +AIHVSA  QTKWWFAKRFLHPDIVA Y YIF
Sbjct: 63  KF-SDNFTIVLFHYDGRTTEWDELEWSKKAIHVSAKKQTKWWFAKRFLHPDIVAPYEYIF 121

Query: 190 LWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHR 243
           LWDED+GV+NF+   Y+ IVK  GLEISQP LDP + ++   IT RR + + H+
Sbjct: 122 LWDEDLGVDNFDAEEYIKIVKKHGLEISQPGLDPDRGQITWRITKRRGDGEVHK 175


This family consists of several uncharacterized proteins from Arabidopsis thaliana. Length = 294

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PF05212 294 DUF707: Protein of unknown function (DUF707); Inte 100.0
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana Back     alignment and domain information
Probab=100.00  E-value=2.9e-87  Score=609.86  Aligned_cols=172  Identities=66%  Similarity=1.163  Sum_probs=169.4

Q ss_pred             cCCCCCCCCCCCCceecCCCCccccCCCCCCCCCCCCCCCceEEEEeccccccchhHHhhhcCCCCeEEEEEEecCcccc
Q 025821           70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE  149 (247)
Q Consensus        70 q~~p~GsE~LP~GIV~~tSDlelr~LWg~p~~~~~~~~~k~Lla~~VGikqK~~Vd~~V~KF~~~nF~imLFHYDG~vd~  149 (247)
                      ||+|+|+|+||+|||+++||||||||||+|+++. ..++|||||||||+|||++||++|+|| ++||+||||||||+||+
T Consensus         4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~   81 (294)
T PF05212_consen    4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE   81 (294)
T ss_pred             CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence            8999999999999999999999999999999885 678999999999999999999999999 99999999999999999


Q ss_pred             ccccccccceeEEEEecccchhhhcccCCcccccceeeEEEeecccccCCCChhhhHHHHhhhCcccccCccCCCCCcee
Q 025821          150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH  229 (247)
Q Consensus       150 W~d~eWs~~aIHvsa~~QtKWWfAKRFLHPdiVa~YeYiFlWDEDlgve~F~~~~Yl~Ivk~~gLeISQPaLd~~~~~~h  229 (247)
                      |+|||||++||||+|+|||||||||||||||||++||||||||||||||||||+|||+|||+|||||||||||+++|++|
T Consensus        82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~  161 (294)
T PF05212_consen   82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH  161 (294)
T ss_pred             hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCccccc
Q 025821          230 HPITARRRNSKAHR  243 (247)
Q Consensus       230 ~~iT~R~~~~~vHr  243 (247)
                      |+||+|+++++|||
T Consensus       162 ~~iT~R~~~~~vhr  175 (294)
T PF05212_consen  162 HPITKRRPDSEVHR  175 (294)
T ss_pred             eeEEeecCCceeEe
Confidence            99999999999998




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 40/284 (14%), Positives = 77/284 (27%), Gaps = 87/284 (30%)

Query: 12  SDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQC 71
            D P      +         S+  I  S   ++       W   H          ++   
Sbjct: 316 QDLPREVLTTNP-----RRLSI--IAESI--RDGLATWDNW--KHVNCDKLTTIIESSLN 364

Query: 72  RLPGTEA---------LPEG--IVSKTSNLEMRPLWSSPSK--------------LNNQR 106
            L   E           P    I +    L +  +W    K              L  ++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTIL--LSL--IWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 107 PPMNLLAI----------AAGIKQ--KKIVDQ--IVRKFPSKDFVVM-----LFHYDG-- 145
           P  + ++I                  + IVD   I + F S D +        + + G  
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 146 -----VVDEWK-------DLVWADRAI-HVSAANQTKWWFAKRFLHPDI--VAEY-NYIF 189
                  +          D  + ++ I H S A     W A   +   +  +  Y  YI 
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----WNASGSILNTLQQLKFYKPYIC 535

Query: 190 LWDED-----IGVENFNPRRYLSIVKDEGLEISQPALDPVKSEV 228
             D         + +F P+   +++  +  ++ + AL      +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00