Citrus Sinensis ID: 025821
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 247 | ||||||
| 255575938 | 370 | conserved hypothetical protein [Ricinus | 0.975 | 0.651 | 0.661 | 2e-92 | |
| 359486223 | 413 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.583 | 0.646 | 9e-88 | |
| 356560121 | 385 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.625 | 0.635 | 6e-87 | |
| 356541848 | 387 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.622 | 0.639 | 6e-85 | |
| 92893672 | 355 | Protein of unknown function DUF707 [Medi | 0.971 | 0.676 | 0.634 | 3e-84 | |
| 255543122 | 389 | conserved hypothetical protein [Ricinus | 0.963 | 0.611 | 0.622 | 1e-81 | |
| 357445211 | 406 | hypothetical protein MTR_2g005330 [Medic | 0.971 | 0.591 | 0.603 | 2e-81 | |
| 357445209 | 368 | hypothetical protein MTR_2g005330 [Medic | 0.971 | 0.652 | 0.603 | 2e-81 | |
| 297735287 | 413 | unnamed protein product [Vitis vinifera] | 0.967 | 0.578 | 0.596 | 8e-81 | |
| 449515369 | 402 | PREDICTED: uncharacterized LOC101205845, | 0.939 | 0.577 | 0.605 | 7e-80 |
| >gi|255575938|ref|XP_002528866.1| conserved hypothetical protein [Ricinus communis] gi|223531717|gb|EEF33540.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/242 (66%), Positives = 194/242 (80%), Gaps = 1/242 (0%)
Query: 2 MKTTNSISVLSDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSA 61
MK+ S DP SRS LC+LF+ A+LICS YFIG SF+ KE KERL RW ++ ++ S
Sbjct: 1 MKSLYCASASPDPKSRSYLCTLFVVASLICSAYFIGGSFIGKEYKERLARWQVIETVQST 60
Query: 62 KPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQK 121
K C++Q C+ GT+ALP+GIV KTS+ EMRPLW+S + N Q+ +LLA+A GI QK
Sbjct: 61 KSTNCEDQ-CKPTGTKALPQGIVRKTSDFEMRPLWNSSLEDNKQKLSKSLLALAVGINQK 119
Query: 122 KIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDI 181
+VDQIV+KFP DFVVMLFHYDGVVD+W+DL W+D AIHVSA NQTKWWFAKRFLHPDI
Sbjct: 120 VVVDQIVKKFPLSDFVVMLFHYDGVVDKWRDLPWSDHAIHVSAVNQTKWWFAKRFLHPDI 179
Query: 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA 241
V+EY+Y+FLWDED+GVENFNP+RYLSI++DEGLEISQPALDP KS V+HPITAR+ S
Sbjct: 180 VSEYDYLFLWDEDLGVENFNPKRYLSIIRDEGLEISQPALDPTKSAVYHPITARQPKSTV 239
Query: 242 HR 243
HR
Sbjct: 240 HR 241
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486223|ref|XP_002265374.2| PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera] gi|297739491|emb|CBI29673.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356560121|ref|XP_003548344.1| PREDICTED: uncharacterized protein LOC100797710 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356541848|ref|XP_003539384.1| PREDICTED: uncharacterized protein LOC100526994 [Glycine max] | Back alignment and taxonomy information |
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| >gi|92893672|gb|ABE91850.1| Protein of unknown function DUF707 [Medicago truncatula] gi|92893916|gb|ABE91966.1| Protein of unknown function DUF707 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255543122|ref|XP_002512624.1| conserved hypothetical protein [Ricinus communis] gi|223548585|gb|EEF50076.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357445211|ref|XP_003592883.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481931|gb|AES63134.1| hypothetical protein MTR_2g005330 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357445209|ref|XP_003592882.1| hypothetical protein MTR_2g005330 [Medicago truncatula] gi|355481930|gb|AES63133.1| hypothetical protein MTR_2g005330 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297735287|emb|CBI17649.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449515369|ref|XP_004164722.1| PREDICTED: uncharacterized LOC101205845, partial [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 247 | ||||||
| TAIR|locus:2124608 | 389 | AT4G18530 "AT4G18530" [Arabido | 0.919 | 0.583 | 0.607 | 2.4e-76 | |
| TAIR|locus:2202124 | 438 | AT1G11170 [Arabidopsis thalian | 0.680 | 0.383 | 0.587 | 5.6e-52 | |
| TAIR|locus:2008425 | 425 | AT1G61240 [Arabidopsis thalian | 0.684 | 0.397 | 0.590 | 9.2e-52 | |
| TAIR|locus:2031905 | 401 | AT1G13000 [Arabidopsis thalian | 0.672 | 0.413 | 0.491 | 4e-42 | |
| TAIR|locus:504956279 | 381 | AT1G24570 [Arabidopsis thalian | 0.663 | 0.430 | 0.488 | 2.8e-41 | |
| TAIR|locus:2008640 | 404 | AT1G67850 "AT1G67850" [Arabido | 0.672 | 0.410 | 0.485 | 2.8e-41 | |
| TAIR|locus:2205140 | 382 | AT1G08040 [Arabidopsis thalian | 0.672 | 0.434 | 0.467 | 3.6e-41 | |
| TAIR|locus:2086721 | 398 | AT3G27470 "AT3G27470" [Arabido | 0.663 | 0.412 | 0.485 | 5.9e-41 | |
| TAIR|locus:2057557 | 374 | AT2G28310 "AT2G28310" [Arabido | 0.672 | 0.443 | 0.455 | 9.6e-41 | |
| TAIR|locus:2079291 | 396 | AT3G26440 [Arabidopsis thalian | 0.684 | 0.426 | 0.473 | 9.9e-39 |
| TAIR|locus:2124608 AT4G18530 "AT4G18530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 144/237 (60%), Positives = 182/237 (76%)
Query: 16 SRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPE--------TCK 67
+RSCLCS+ I ALIC YFI ++++AK+ KE+L++W + M+++ + TCK
Sbjct: 7 NRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCK 66
Query: 68 NQQCRLPGTEALPEGIVSKTSNLEMRPLWS-SPSKLNNQRPPMNLLAIAAGIKQKKIVDQ 126
N + GTEALP+GI+ KTSNLE + LW+ +K M+LLA+A GIKQK++V++
Sbjct: 67 NFN-KPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNK 125
Query: 127 IVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYN 186
+++KFP +DF VMLFHYDGVVD+WK W + AIHVS NQTKWWFAKRFLHPDIVAEY
Sbjct: 126 VIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYE 185
Query: 187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHR 243
YIFLWDED+GV +FNP+RYLSIVK+EGLEISQPALD KSEVHHPITARR+ SK HR
Sbjct: 186 YIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHR 242
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| TAIR|locus:2202124 AT1G11170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2008425 AT1G61240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2031905 AT1G13000 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:504956279 AT1G24570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2008640 AT1G67850 "AT1G67850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2205140 AT1G08040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086721 AT3G27470 "AT3G27470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057557 AT2G28310 "AT2G28310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079291 AT3G26440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00035311001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (411 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 247 | |||
| pfam05212 | 294 | pfam05212, DUF707, Protein of unknown function (DU | 2e-86 |
| >gnl|CDD|218501 pfam05212, DUF707, Protein of unknown function (DUF707) | Back alignment and domain information |
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Score = 258 bits (660), Expect = 2e-86
Identities = 92/174 (52%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVR 129
G E LP GIV S+ +R LW SP + + P LLA G QK VD V+
Sbjct: 4 PTNPRGAERLPPGIVVSESDFYLRRLWGSPEE-DVASKPKYLLAFTVGYSQKANVDACVK 62
Query: 130 KFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIF 189
KF S +F ++LFHYDG EW +L W+ +AIHVSA QTKWWFAKRFLHPDIVA Y YIF
Sbjct: 63 KF-SDNFTIVLFHYDGRTTEWDELEWSKKAIHVSAKKQTKWWFAKRFLHPDIVAPYEYIF 121
Query: 190 LWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHR 243
LWDED+GV+NF+ Y+ IVK GLEISQP LDP + ++ IT RR + + H+
Sbjct: 122 LWDEDLGVDNFDAEEYIKIVKKHGLEISQPGLDPDRGQITWRITKRRGDGEVHK 175
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This family consists of several uncharacterized proteins from Arabidopsis thaliana. Length = 294 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 247 | |||
| PF05212 | 294 | DUF707: Protein of unknown function (DUF707); Inte | 100.0 |
| >PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana | Back alignment and domain information |
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Probab=100.00 E-value=2.9e-87 Score=609.86 Aligned_cols=172 Identities=66% Similarity=1.163 Sum_probs=169.4
Q ss_pred cCCCCCCCCCCCCceecCCCCccccCCCCCCCCCCCCCCCceEEEEeccccccchhHHhhhcCCCCeEEEEEEecCcccc
Q 025821 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149 (247)
Q Consensus 70 q~~p~GsE~LP~GIV~~tSDlelr~LWg~p~~~~~~~~~k~Lla~~VGikqK~~Vd~~V~KF~~~nF~imLFHYDG~vd~ 149 (247)
||+|+|+|+||+|||+++||||||||||+|+++. ..++|||||||||+|||++||++|+|| ++||+||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999885 678999999999999999999999999 99999999999999999
Q ss_pred ccccccccceeEEEEecccchhhhcccCCcccccceeeEEEeecccccCCCChhhhHHHHhhhCcccccCccCCCCCcee
Q 025821 150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 229 (247)
Q Consensus 150 W~d~eWs~~aIHvsa~~QtKWWfAKRFLHPdiVa~YeYiFlWDEDlgve~F~~~~Yl~Ivk~~gLeISQPaLd~~~~~~h 229 (247)
|+|||||++||||+|+|||||||||||||||||++||||||||||||||||||+|||+|||+|||||||||||+++|++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCccccc
Q 025821 230 HPITARRRNSKAHR 243 (247)
Q Consensus 230 ~~iT~R~~~~~vHr 243 (247)
|+||+|+++++|||
T Consensus 162 ~~iT~R~~~~~vhr 175 (294)
T PF05212_consen 162 HPITKRRPDSEVHR 175 (294)
T ss_pred eeEEeecCCceeEe
Confidence 99999999999998
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 247 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-05
Identities = 40/284 (14%), Positives = 77/284 (27%), Gaps = 87/284 (30%)
Query: 12 SDPPSRSCLCSLFIAAALICSVYFIGSSFVAKENKERLMRWGLVHSMYSAKPETCKNQQC 71
D P + S+ I S ++ W H ++
Sbjct: 316 QDLPREVLTTNP-----RRLSI--IAESI--RDGLATWDNW--KHVNCDKLTTIIESSLN 364
Query: 72 RLPGTEA---------LPEG--IVSKTSNLEMRPLWSSPSK--------------LNNQR 106
L E P I + L + +W K L ++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTIL--LSL--IWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 107 PPMNLLAI----------AAGIKQ--KKIVDQ--IVRKFPSKDFVVM-----LFHYDG-- 145
P + ++I + IVD I + F S D + + + G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 146 -----VVDEWK-------DLVWADRAI-HVSAANQTKWWFAKRFLHPDI--VAEY-NYIF 189
+ D + ++ I H S A W A + + + Y YI
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-----WNASGSILNTLQQLKFYKPYIC 535
Query: 190 LWDED-----IGVENFNPRRYLSIVKDEGLEISQPALDPVKSEV 228
D + +F P+ +++ + ++ + AL +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00