Citrus Sinensis ID: 025837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
ccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccEEEEcccccccccccccEEEEEccccccccccccEEEEEcccccccccccccHHHHHHcccccccHHHHcccEEEEEEEEEccccccccEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEccccccEEccccccccEEEcccccccccEEEEEEEccccEEEEEEcccccccccccEEEcccccc
cHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccHcHHcHHHHHHHHHHcccEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEEccccccEEEEEEEcccccccEEcccccccccccccccccccEEEEEEEcccccEEEEEccccccccccccEEEEEEEcc
MGLCQYYLLSVVMLLPAlcysqysftnsratyygspdglgtptgacgfggygrnvndaNVAGVSRlwnngagcgtcyqvrctvpeictdegvsvvvtdygegddtdfilspraygrmavadkseelyshgvvdvefervpcrfrgynVMFKvhensrypqYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRafgavfdisnpspgeinlrfqvsgsaGFTWVVANNAIPRAWKAGVAYGSAIQLE
MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEelyshgvvdvefervpCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAvfdisnpspGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
**LCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSA****
*GLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLCQYYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
O23547250 Expansin-like B1 OS=Arabi yes no 0.963 0.952 0.587 8e-81
Q850K7256 Expansin-like B1 OS=Oryza yes no 0.967 0.933 0.385 1e-45
Q10S70279 Expansin-like A1 OS=Oryza yes no 0.882 0.781 0.367 2e-35
Q8H7T4267 Expansin-B10 OS=Oryza sat no no 0.874 0.808 0.355 2e-33
Q9SVE5265 Expansin-like A2 OS=Arabi no no 0.753 0.701 0.356 1e-32
Q9LZT4265 Expansin-like A1 OS=Arabi no no 0.753 0.701 0.349 1e-32
Q40638267 Expansin-B1 OS=Oryza sati no no 0.886 0.820 0.330 3e-32
Q9LZT5263 Expansin-like A3 OS=Arabi no no 0.753 0.707 0.356 4e-32
Q7XT40264 Expansin-B15 OS=Oryza sat no no 0.979 0.916 0.329 9e-32
Q5W6Z9264 Expansin-B18 OS=Oryza sat no no 0.959 0.897 0.332 2e-31
>sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 141/240 (58%), Positives = 175/240 (72%), Gaps = 2/240 (0%)

Query: 8   LLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RL 66
            + V++LLP LC S   F NSRATYYGSPD    P G CG+G +GR++N+  V+GVS RL
Sbjct: 11  FVQVIVLLPLLCLSD-DFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRL 69

Query: 67  WNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEEL 126
           WNNG GCG CYQVRC +P  C++EGV VV TD GEGD TDFILSP+AYGRMA      +L
Sbjct: 70  WNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQL 129

Query: 127 YSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCR 186
           YS GVV+VE++R+PCR+ GYN+++K+HE S  P YLA+ +LYV G ND+LAVE+WQ+DC+
Sbjct: 130 YSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCK 189

Query: 187 DWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQL 246
           +W  MRR FGAV D+ NP  G + LRF V GSAG  W+ + NAIP  W AG  Y S I L
Sbjct: 190 EWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILL 249

Arabidopsis thaliana (taxid: 3702)
>sp|Q850K7|EXLB1_ORYSJ Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2 Back     alignment and function description
>sp|Q10S70|EXLA1_ORYSJ Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7T4|EXB10_ORYSJ Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVE5|EXLA2_ARATH Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZT4|EXLA1_ARATH Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1 Back     alignment and function description
>sp|Q40638|EXPB1_ORYSJ Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2 Back     alignment and function description
>sp|Q9LZT5|EXLA3_ARATH Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XT40|EXB15_ORYSJ Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2 Back     alignment and function description
>sp|Q5W6Z9|EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
255580799247 Major pollen allergen Ory s 1 precursor, 0.991 0.991 0.684 1e-95
224126451236 hypothetical protein POPTRDRAFT_783792 [ 0.947 0.991 0.686 2e-91
224138720251 hypothetical protein POPTRDRAFT_589918 [ 0.971 0.956 0.670 8e-91
255580801248 Major pollen allergen Ory s 1 precursor, 0.967 0.963 0.654 5e-89
356563391251 PREDICTED: expansin-like B1-like [Glycin 0.979 0.964 0.658 4e-88
357482205251 Expansin-like protein [Medicago truncatu 0.983 0.968 0.590 2e-83
388493184252 unknown [Medicago truncatula] 0.983 0.964 0.590 2e-83
356497093251 PREDICTED: expansin-like B1-like [Glycin 0.979 0.964 0.613 1e-82
225466785251 PREDICTED: expansin-like B1 [Vitis vinif 0.971 0.956 0.591 1e-81
356510889251 PREDICTED: expansin-like B1-like [Glycin 0.914 0.900 0.647 2e-81
>gi|255580799|ref|XP_002531220.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223529180|gb|EEF31156.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 203/247 (82%), Gaps = 2/247 (0%)

Query: 1   MGLCQ-YYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDAN 59
           MGL   Y +  +V+LLPA+ YSQ  FT SRATYYGSPD LGTPTGACGFG YGR VNDAN
Sbjct: 1   MGLIYGYCMFCLVVLLPAIAYSQ-DFTGSRATYYGSPDCLGTPTGACGFGEYGRTVNDAN 59

Query: 60  VAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAV 119
           VAGVSRL+ NG GCG CYQVRC  P+IC+D+GV+VVVTDYGEGD TDFILS RAY R+A 
Sbjct: 60  VAGVSRLYKNGTGCGGCYQVRCKAPQICSDDGVNVVVTDYGEGDKTDFILSSRAYARLAR 119

Query: 120 ADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVE 179
            + + EL+++GVVD+E+ R+ CR+ GYNVMFKVHE+SR+P+YLA+ +LY  GQND+LAV+
Sbjct: 120 PNMAAELFAYGVVDIEYRRISCRYAGYNVMFKVHEHSRFPEYLAIVVLYQGGQNDILAVQ 179

Query: 180 IWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239
           IWQ+DC++W+ MR+A+GAV+D+ NP  G I LRFQVSGSAG TWV A NAIP  WK GVA
Sbjct: 180 IWQEDCKEWIGMRKAYGAVWDMPNPPKGYITLRFQVSGSAGLTWVQAKNAIPSEWKVGVA 239

Query: 240 YGSAIQL 246
           Y SAIQL
Sbjct: 240 YDSAIQL 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126451|ref|XP_002329557.1| hypothetical protein POPTRDRAFT_783792 [Populus trichocarpa] gi|222870266|gb|EEF07397.1| hypothetical protein POPTRDRAFT_783792 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138720|ref|XP_002326673.1| hypothetical protein POPTRDRAFT_589918 [Populus trichocarpa] gi|222833995|gb|EEE72472.1| hypothetical protein POPTRDRAFT_589918 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580801|ref|XP_002531221.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223529181|gb|EEF31157.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563391|ref|XP_003549947.1| PREDICTED: expansin-like B1-like [Glycine max] Back     alignment and taxonomy information
>gi|357482205|ref|XP_003611388.1| Expansin-like protein [Medicago truncatula] gi|355512723|gb|AES94346.1| Expansin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388493184|gb|AFK34658.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356497093|ref|XP_003517398.1| PREDICTED: expansin-like B1-like [Glycine max] Back     alignment and taxonomy information
>gi|225466785|ref|XP_002273896.1| PREDICTED: expansin-like B1 [Vitis vinifera] gi|296088951|emb|CBI38517.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510889|ref|XP_003524166.1| PREDICTED: expansin-like B1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2130444250 EXLB1 "expansin-like B1" [Arab 0.959 0.948 0.589 3e-78
TAIR|locus:2121803265 EXLA2 "expansin-like A2" [Arab 0.963 0.898 0.336 3.9e-37
TAIR|locus:2077177265 EXLA1 "expansin-like A1" [Arab 0.878 0.818 0.336 4.4e-36
TAIR|locus:2077167263 EXLA3 "expansin-like A3" [Arab 0.963 0.904 0.327 9.2e-36
TAIR|locus:2018521273 EXPB2 "expansin B2" [Arabidops 0.886 0.802 0.349 1.1e-30
TAIR|locus:2123643264 EXPB3 "expansin B3" [Arabidops 0.854 0.799 0.355 1.1e-30
TAIR|locus:2055594259 EXPB4 "expansin B4" [Arabidops 0.955 0.911 0.324 9.4e-27
TAIR|locus:2051338271 EXPB1 "expansin B1" [Arabidops 0.963 0.878 0.301 5.9e-25
TAIR|locus:4515102723223 EXPB6 "AT1G65681" [Arabidopsis 0.834 0.923 0.317 9.7e-25
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.927 0.905 0.314 1.3e-22
TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 141/239 (58%), Positives = 175/239 (73%)

Query:     9 LSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLW 67
             + V++LLP LC S   F NSRATYYGSPD    P G CG+G +GR++N+  V+GVS RLW
Sbjct:    12 VQVIVLLPLLCLSD-DFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLW 70

Query:    68 NNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELY 127
             NNG GCG CYQVRC +P  C++EGV VV TD GEGD TDFILSP+AYGRMA      +LY
Sbjct:    71 NNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLY 130

Query:   128 SHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRD 187
             S GVV+VE++R+PCR+ GYN+++K+HE S  P YLA+ +LYV G ND+LAVE+WQ+DC++
Sbjct:   131 SFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKE 190

Query:   188 WVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQL 246
             W  MRR FGAV D+ NP  G + LRF V GSAG  W+ + NAIP  W AG  Y S I L
Sbjct:   191 WRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILL 249
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009826 "unidimensional cell growth" evidence=ISS
GO:0009828 "plant-type cell wall loosening" evidence=ISS
GO:0019953 "sexual reproduction" evidence=IEA
TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23547EXLB1_ARATHNo assigned EC number0.58750.96350.952yesno
Q850K7EXLB1_ORYSJNo assigned EC number0.38520.96760.9335yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrEXLB1
expansin-related protein 1 precursor (236 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 1e-143
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-20
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-17
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 4e-13
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 7e-13
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 6e-05
PLN00115118 PLN00115, PLN00115, pollen allergen group 3; Provi 4e-04
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 9e-04
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information 
 Score =  401 bits (1031), Expect = e-143
 Identities = 167/247 (67%), Positives = 196/247 (79%), Gaps = 2/247 (0%)

Query: 1   MGLCQYY-LLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDAN 59
             L  Y   L V++LLP LC SQ  FT SRATYYGSPD LGTPTGACGFG YGR VN  N
Sbjct: 1   FPLSHYCCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGN 59

Query: 60  VAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAV 119
           VAGVSRL+ NG GCG CYQVRC  P +C+D+GV+VVVTDYGEGD TDFILSPRAY R+A 
Sbjct: 60  VAGVSRLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLAR 119

Query: 120 ADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVE 179
            + + EL+++GVVDVE+ R+PCR+ GYN+ FKVHE+SR+P YLA+ MLY +GQND+LAVE
Sbjct: 120 PNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVE 179

Query: 180 IWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVA 239
           IWQ+DC++W  MR+A+GAV+D+ NP  G I LRFQVSGSAG TWV A N IP  WKAGVA
Sbjct: 180 IWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVA 239

Query: 240 YGSAIQL 246
           Y S IQL
Sbjct: 240 YDSNIQL 246

Length = 247
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN03023247 Expansin-like B1; Provisional 100.0
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.96
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.96
PLN00115118 pollen allergen group 3; Provisional 99.93
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.9
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.88
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.79
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 98.95
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.25
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 97.86
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 97.13
PRK10672361 rare lipoprotein A; Provisional 96.93
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 92.74
PF03404131 Mo-co_dimer: Mo-co oxidoreductase dimerisation dom 89.18
cd02110317 SO_family_Moco_dimer Subgroup of sulfite oxidase ( 84.66
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.1e-75  Score=508.49  Aligned_cols=241  Identities=68%  Similarity=1.261  Sum_probs=224.0

Q ss_pred             HHHHHHHHhhhhccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEECCCC
Q 025837            6 YYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPE   85 (247)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GACGy~~~~~~~~~~~~aA~s~l~~~g~~CG~C~~V~c~~~~   85 (247)
                      +++|+++|++|.+.+++ +|++++|||||++++.|+++|||||+++..+.+++.+||+|+||++|++||+||||+|.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~   85 (247)
T PLN03023          7 CCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKAPN   85 (247)
T ss_pred             HHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCCCC
Confidence            45555666666655555 59999999999999999999999999998888999999999999999999999999999999


Q ss_pred             cccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCCcceEEEEeeCCCCCcEEEEE
Q 025837           86 ICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS  165 (247)
Q Consensus        86 ~C~~~~v~V~VtD~Cp~~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g~~i~~~v~~gs~~~~w~~~~  165 (247)
                      +|++++|+|+|||.||+++.|||||.+||.+||+|++++++++.|+|+|+||||||.++|++|+|+|+++|.+|+||+++
T Consensus        86 ~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl  165 (247)
T PLN03023         86 LCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV  165 (247)
T ss_pred             ccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence            99999999999999999999999999999999999988888999999999999999999999999999999559999999


Q ss_pred             EEEccCCcceEEEEEEecCCCCeEEccccCCceeccCCCCCCceeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCCC
Q 025837          166 MLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAVFDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQ  245 (247)
Q Consensus       166 v~n~gG~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~y~t~~Q  245 (247)
                      |.|++|.++|++||||++++..|++|+|+||++|+.+.+++|||+|||++|.++|+++|+++||||++|++|+||++.+|
T Consensus       166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq  245 (247)
T PLN03023        166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQ  245 (247)
T ss_pred             EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccc
Confidence            99999999999999998778899999999999999999999999999999988884558999999999999999999999


Q ss_pred             CC
Q 025837          246 LE  247 (247)
Q Consensus       246 f~  247 (247)
                      |.
T Consensus       246 ~~  247 (247)
T PLN03023        246 LD  247 (247)
T ss_pred             cC
Confidence            95

>PLN00193 expansin-A; Provisional Back     alignment and domain information
>PLN00050 expansin A; Provisional Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) Back     alignment and domain information
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 5e-30
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 6e-28
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 20/231 (8%)
Query: 24  SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVS-----RLWNNGAGCGTC 76
            + ++++T+YG P G G     GACG+    ++V+    +G++      ++ +G GCG+C
Sbjct: 18  KWLDAKSTWYGKPTGAGPKDNGGACGY----KDVDKPPFSGMTGCGNTPIFKSGRGCGSC 73
Query: 77  YQVRCTVPEICTDEGVSVVVTDYGEGDDT--DFILSPRAYGRMAVADKSEELYSHGVVDV 134
           ++++CT PE C+ E V V +TD  E       F LS  A+G MA     ++L S G +++
Sbjct: 74  FEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELEL 133
Query: 135 EFERVPCRF-RGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRR 193
           +F RV C++  G  V F V + S  P YLA+ + YV+G  DV+AV+I +K    W+ ++ 
Sbjct: 134 QFRRVKCKYPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKE 192
Query: 194 AFGAVFDISNPSP--GEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGS 242
           ++GA++ I  P    G   +R+   G    T   A + IP  WKA  +Y S
Sbjct: 193 SWGAIWRIDTPDKLTGPFTVRYTTEGG---TKTEAEDVIPEGWKADTSYES 240
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 9e-55
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 4e-53
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 2e-28
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 4e-24
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 4e-22
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 3e-18
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 7e-05
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  175 bits (444), Expect = 9e-55
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 24  SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVSR-LWNNGAGCGTCYQVR 80
            +  +RAT+YG P+G G P   GACG             A  +  ++ +G GCG+CY+VR
Sbjct: 18  KWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77

Query: 81  CTVPEICTDEGVSVVVTD--YGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFER 138
           C     C+   V+V +TD  Y       F LS +A+G +A    ++++   G++DVEF R
Sbjct: 78  CKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRR 137

Query: 139 VPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQKDCRDWVPMRRAFGAV 198
           V C++     +    E    P YLAV + YV+   D++ +EI  K   +W PM+ ++GA+
Sbjct: 138 VRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAI 197

Query: 199 FDISNPSPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQ 245
           + +      +     +++  +G   V+A + IP  W+    Y S +Q
Sbjct: 198 WRMDTAKALKGPFSIRLTSESG-KKVIAKDVIPANWRPDAVYTSNVQ 243
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.97
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 99.96
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.95
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.93
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.67
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.21
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.18
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.1
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.1
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 98.05
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 98.04
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.57
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.94
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=2.2e-68  Score=468.32  Aligned_cols=224  Identities=30%  Similarity=0.656  Sum_probs=205.8

Q ss_pred             cccCCCceeEEEEEeCCCCCCCC--CCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEECCCCcccCCcEEEE
Q 025837           19 CYSQYSFTNSRATYYGSPDGLGT--PTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTVPEICTDEGVSVV   95 (247)
Q Consensus        19 ~~~~~~~~~g~aT~Yg~~~~~g~--~~GACGy~~~~~~~~~~~~aA~s-~l~~~g~~CG~C~~V~c~~~~~C~~~~v~V~   95 (247)
                      ..++++|+.|+||||+++++.++  ++|||||++++.+|++.++||+| +||++|+.||+||||+|.+++.|++++|+|+
T Consensus        13 ~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~   92 (245)
T 2hcz_X           13 TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVY   92 (245)
T ss_dssp             SCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEE
T ss_pred             cccCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEE
Confidence            34578999999999999998887  78999999988889999999999 9999999999999999988888999999999


Q ss_pred             EeeCCCC--CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCC-cceEEEEeeCCCCCcEEEEEEEEccCC
Q 025837           96 VTDYGEG--DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRG-YNVMFKVHENSRYPQYLAVSMLYVSGQ  172 (247)
Q Consensus        96 VtD~Cp~--~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g-~~i~~~v~~gs~~~~w~~~~v~n~gG~  172 (247)
                      |||+||.  ++.|||||++||.+||++++++++++.|+++|+||||+|+++| .||+|+|+++| ++||++|+|.|++|.
T Consensus        93 VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs-~~~~~avlv~n~~g~  171 (245)
T 2hcz_X           93 ITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGC-NPNYLAVLVKYVADD  171 (245)
T ss_dssp             EEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCC-SSSCCCEEEECCCTT
T ss_pred             EEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCC-CcceEEEEEEecCCC
Confidence            9999975  5689999999999999988877778999999999999999983 48999999999 899999999999999


Q ss_pred             cceEEEEEEecCCCCeEEccccCCceeccCCC--CCCceeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCCCC
Q 025837          173 NDVLAVEIWQKDCRDWVPMRRAFGAVFDISNP--SPGEINLRFQVSGSAGFTWVVANNAIPRAWKAGVAYGSAIQL  246 (247)
Q Consensus       173 ~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~--~~gp~~lr~rvt~~~G~~~vv~~~vip~~w~~g~~y~t~~Qf  246 (247)
                      ++|++|||+++++..|++|+|+|||+|+.+..  +++|  |+||||+.+| ++|+++||||++|++|++|++.+||
T Consensus       172 g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gp--ls~RvT~~~G-~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          172 GDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGP--FSIRLTSESG-KKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             CCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSS--CCEEEEETTS-CEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             CCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCC--EEEEEEEeCC-cEEEEeeeecCCCCCCCEEeCcccc
Confidence            99999999987777999999999999998764  6787  5567777889 9999999999999999999999999
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 3e-32
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 9e-24
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 8e-20
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 1e-14
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  113 bits (283), Expect = 3e-32
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 24  SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVR 80
            + ++++T+YG P G G     GACG+    +          +  ++ +G GCG+C++++
Sbjct: 16  KWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIK 75

Query: 81  CTVPEICTDEGVSVVVTDYGEG--DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFER 138
           CT PE C+ E V V +TD  E       F LS  A+G MA     ++L S G ++++F R
Sbjct: 76  CTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRR 135

Query: 139 VPCRFRG 145
           V C++  
Sbjct: 136 VKCKYPE 142
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 99.97
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.96
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.94
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.47
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 93.96
d1ogpa1127 Sulfite oxidase, C-terminal domain {Mouse-ear cres 85.21
d2a9da1123 Sulfite oxidase, C-terminal domain {Chicken (Gallu 83.9
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=4.4e-39  Score=259.41  Aligned_cols=127  Identities=31%  Similarity=0.671  Sum_probs=109.1

Q ss_pred             cccCCCceeEEEEEeCCCCCCCC--CCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEECCCCcccCCcEEEE
Q 025837           19 CYSQYSFTNSRATYYGSPDGLGT--PTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTVPEICTDEGVSVV   95 (247)
Q Consensus        19 ~~~~~~~~~g~aT~Yg~~~~~g~--~~GACGy~~~~~~~~~~~~aA~s-~l~~~g~~CG~C~~V~c~~~~~C~~~~v~V~   95 (247)
                      +...++|++|+||||+.+++.++  .+|||||++++..|++.++||+| ++|++|..||+||||+|.++.+|.+++|+|+
T Consensus        11 a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~sv~V~   90 (143)
T d1n10a2          11 ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVH   90 (143)
T ss_dssp             CBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEE
T ss_pred             cccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCCCEEEE
Confidence            34468999999999999887664  36999999998888999999999 9999999999999999999999999999999


Q ss_pred             EeeCCCC--CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeeccCC
Q 025837           96 VTDYGEG--DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRG  145 (247)
Q Consensus        96 VtD~Cp~--~~~~~DLs~~aF~~la~~~~~~~~~~~G~v~i~~r~V~C~~~g  145 (247)
                      |||.||.  +..|||||++||.+||+++...++++.|+|+|+||||+|.++|
T Consensus        91 vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          91 ITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            9999986  3469999999999999887655668899999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure